Citrus Sinensis ID: 036458

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
Protein Sequence
MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLEMYTKITGKAVDLSVDLSAASATAEQ
Secondary Structure (PSIPRED)
ccccccEEEEcccHHHHHHHHHHHHcccEEEEcccccccccccEEEEccHHHHHHcccccccccccccccccccccccHHHccccEEEEEcccccEEEEEEEEcccEEEEEccEEEEEcccHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHHHHcccEEEccccccEEEEcccccEEEEccccEEEEEcEEEEcccccccccccEEEEEEEEEEEcccccccccccEEEEEcccccccccccEEEEEEcccccccccccEEEEEEEEccccccccccHHHHHHcccccEEEEEcccccccccccccccEEEccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEcccHHHHHHHHHHHHccccEEEEccccccHHHcEEccHHHHHHHccccccccHHHccHHHccEEccccEEEcccHHHHHHHHHcHHHHccEEEccEEEEEEccEEEEccccHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHcccccccccEHHHHHHHccccHHHHHHHHHHcccccccHHHHcEHHHHHHHHHHHHHHHHHHcHcccEEEEcccccHHHHHHHHHHHHHccEEEccccccEEEEccccEEEEEEEccEEEEEEEEEEcHHHcHHHEEEEEEEEEEEEEEccccccccccccEEEEEcHHHHcccccEEEEEEEHHHcccccccEEEEEEEEcccccHHHHcHHHHcccccccEEEEEEEEEEEEccccccccEEEccccccccEcHHHHHHHHHHHHHHHcccccccccccHHHHHHcc
Coil and Loop (DISEMBL)
MDEDYDVIVLGTGLKEcilsgvlsvdglkvlhmdrnayyggestslNLTQLWKrfkgddkpperlgsskeynvdmipkfmmanGGLVRILIHTDVTKylnfkavdgsfvynkgkiykvpatdvealksPLMGLFEKRRARKFFIYVQEyeeddpkshegldlnKVTAREIISkygleddtIDFIGHALALHIndsyleepaMDFVKRIKLYAESLArfqggspyiyplyglgelPQAFARLSAVYggtymlnkpeckvefdgdgkvigvtsegetakckkvvcdpsylpdkvqkVGKVARAICimnhpipdtndshscqvilpqkqlgrksdmylfccsyahnvapngqyIAFVSTeaetdnpevelkpgidllgpvdeiffdtydrfvptnnheadhcfistsydatthfESTVQDVLEMYTKITGKAVDLSVDLSAASATAEQ
Flexible Loop (DISEMBL)
MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYyggestslnlTQLWKRFkgddkpperlgsskeynvDMIPKFMMANGGLVRILIHTDVTKYLNfkavdgsfvynKGKIykvpatdvealksplmglfekRRARKFFIYVQeyeeddpkshegldlnkVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGvtsegetakckkvvcdpsylpdkVQKVGKVARAICIMNhpipdtndshsCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLEMYTKITGKAVDLSVDLSAASATAEQ
Low Complexity Region (SEG)
MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLEMYTKITGKAVDLSVDLSAASATAEQ
Disordered region (IsUnstruct)
****YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRF***************YNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYE*********LDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLEMYTKITGKAVDLSV***********
Disordered Region (DISOPRED)
MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTE********ELKPGIDLLGPVDEIFFDT**************CFISTSYDATTHFESTVQDVLEMYTKITGKAVDLSV***********
Disordered Region (DISEMBL)
MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEY********EGLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLEMYTKITGKAVDLSVDL*********
Disordered Region (DISPRO)
*DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLEMYTKITGKAVDL*V***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLEMYTKITGKAVDLSVDLSAASATAEQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	445	2.2.26 [Sep-21-2011]
P50396	447	Rab GDP dissociation inhi	yes	no	0.966	0.961	0.579	1e-153
P21856	447	Rab GDP dissociation inhi	yes	no	0.966	0.961	0.577	1e-152
P50398	447	Rab GDP dissociation inhi	yes	no	0.966	0.961	0.577	1e-152
P60028	447	Rab GDP dissociation inhi	yes	no	0.966	0.961	0.579	1e-152
P31150	447	Rab GDP dissociation inhi	yes	no	0.966	0.961	0.579	1e-152
O97555	447	Rab GDP dissociation inhi	yes	no	0.966	0.961	0.575	1e-152
Q7YQM0	447	Rab GDP dissociation inhi	N/A	no	0.966	0.961	0.577	1e-152
P50395	445	Rab GDP dissociation inhi	no	no	0.961	0.961	0.586	1e-152
Q8HXX7	447	Rab GDP dissociation inhi	N/A	no	0.966	0.961	0.577	1e-152
Q5RCE1	445	Rab GDP dissociation inhi	yes	no	0.961	0.961	0.583	1e-151

>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3

 Score =  541 bits (1395), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 251/433 (57%), Positives = 336/433 (77%), Gaps = 3/433 (0%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
           MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF+  +
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQILE 60

Query: 60  KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
            PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSFVY  GKIYKVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
           +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+  D YL++P ++ + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
           RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+VQK G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVI 298

Query: 300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
           R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query: 360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
           T  PE E++P ++LL P+D+ F    D + P ++      F S SYDATTHFE+T  D+ 
Sbjct: 359 TAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIK 418

Query: 420 EMYTKITGKAVDL 432
           ++Y ++ G A D 
Sbjct: 419 DIYKRMAGSAFDF 431

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.
Mus musculus (taxid: 10090)

>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1

 Score =  540 bits (1390), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 250/433 (57%), Positives = 337/433 (77%), Gaps = 3/433 (0%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
           MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF+  +
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
            PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSFVY  GKIYKVP
Sbjct: 61  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
           +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+  D YL++P ++ + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
           RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+V+K G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 298

Query: 300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
           R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query: 360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
           T +PE E++P ++LL P+D+ F    D + P ++      F S SYDATTHFE+T  D+ 
Sbjct: 359 TTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIK 418

Query: 420 EMYTKITGKAVDL 432
           ++Y ++ G A D 
Sbjct: 419 DIYKRMAGSAFDF 431

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1

 Score =  540 bits (1390), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 250/433 (57%), Positives = 336/433 (77%), Gaps = 3/433 (0%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
           MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF+  +
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
            PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSFVY  GKIYKVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
           +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+  D YL++P ++ + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
           RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+V+K G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
           R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query: 360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
           T  PE E++P ++LL P+D+ F    D + P ++      F S SYDATTHFE+T  D+ 
Sbjct: 359 TAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIK 418

Query: 420 EMYTKITGKAVDL 432
           ++Y ++ G A D 
Sbjct: 419 DIYKRMAGSAFDF 431

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Rattus norvegicus (taxid: 10116)

>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1

 Score =  540 bits (1390), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 251/433 (57%), Positives = 337/433 (77%), Gaps = 3/433 (0%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
           MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF+  +
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
            PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSFVY  GKIYKVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
           +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+  D YL++P ++ V RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
           RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+V+K G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
           R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query: 360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
           T +PE E++P ++LL P+D+ F    D + P ++      F S SYDATTHFE+T  D+ 
Sbjct: 359 TTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIK 418

Query: 420 EMYTKITGKAVDL 432
           ++Y ++ G A D 
Sbjct: 419 DIYKRMAGTAFDF 431

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Pan troglodytes (taxid: 9598)

>sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2

 Score =  540 bits (1390), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 251/433 (57%), Positives = 337/433 (77%), Gaps = 3/433 (0%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
           MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF+  +
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
            PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSFVY  GKIYKVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
           +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+  D YL++P ++ V RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
           RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+V+K G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
           R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query: 360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
           T +PE E++P ++LL P+D+ F    D + P ++      F S SYDATTHFE+T  D+ 
Sbjct: 359 TTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIK 418

Query: 420 EMYTKITGKAVDL 432
           ++Y ++ G A D 
Sbjct: 419 DIYKRMAGTAFDF 431

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1

 Score =  539 bits (1388), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 249/433 (57%), Positives = 336/433 (77%), Gaps = 3/433 (0%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
           MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF+  +
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
            PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSF+Y  GKIYKVP
Sbjct: 61  GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFIYKGGKIYKVP 120

Query: 120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
           +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+  D YL++P ++ + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
           RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+V+K G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
           R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query: 360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
           T  PE E++P ++LL P+D+ F    D + P ++      F S SYDATTHFE+T  D+ 
Sbjct: 359 TAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIK 418

Query: 420 EMYTKITGKAVDL 432
           ++Y ++ G A D 
Sbjct: 419 DIYKRMAGSAFDF 431

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Canis familiaris (taxid: 9615)

>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1

 Score =  539 bits (1388), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 250/433 (57%), Positives = 337/433 (77%), Gaps = 3/433 (0%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
           MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF+  +
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
            PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSFVY  GKIYKVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
           +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+  D YL++P ++ + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
           RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+V+K G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
           R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query: 360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
           T +PE E++P ++LL P+D+ F    D + P ++      F S SYDATTHFE+T  D+ 
Sbjct: 359 TTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIK 418

Query: 420 EMYTKITGKAVDL 432
           ++Y ++ G A D 
Sbjct: 419 DIYKRMAGTAFDF 431

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Pongo pygmaeus (taxid: 9600)

>sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2

 Score =  539 bits (1388), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 255/435 (58%), Positives = 332/435 (76%), Gaps = 7/435 (1%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
           M+E+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES S+  L  L+KRFK   
Sbjct: 1   MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60

Query: 60  KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
            PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK  +GSFVY  GKIYKVP
Sbjct: 61  SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120

Query: 120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
           +T+ EAL S LMGLFEKRR RKF +YV  ++E DP++ EG+D  K T R++  K+ L  D
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 180

Query: 180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+  D YL++P  + + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKP--ECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGK 297
           RLSA+YGGTYMLNKP  E  V+   +GKVIGV SEGE A+CK+++CDPSY+ D+V+KVG+
Sbjct: 240 RLSAIYGGTYMLNKPIEEIIVQ---NGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQ 296

Query: 298 VARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTE 357
           V R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   S+AHNVA  G+YIA VST 
Sbjct: 297 VIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTT 356

Query: 358 AETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQD 417
            ET  PE E++P ++LL P+++ F    D  VP +       FIS +YDATTHFE+T  D
Sbjct: 357 VETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDD 416

Query: 418 VLEMYTKITGKAVDL 432
           +  +Y ++TG   D 
Sbjct: 417 IKNIYKRMTGSEFDF 431

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1

 Score =  538 bits (1387), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 250/433 (57%), Positives = 337/433 (77%), Gaps = 3/433 (0%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
           MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF+  +
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
            PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSFVY  GKIYKVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
           +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+  D YL++P ++ + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
           RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+V+K G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
           R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query: 360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
           T +PE E++P ++LL P+D+ F    D + P ++      F S SYDATTHFE+T  D+ 
Sbjct: 359 TTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIK 418

Query: 420 EMYTKITGKAVDL 432
           ++Y ++ G A D 
Sbjct: 419 DIYKRMAGMAFDF 431

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Macaca fascicularis (taxid: 9541)

>sp|Q5RCE1|GDIB_PONAB Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1

 Score =  536 bits (1381), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 254/435 (58%), Positives = 332/435 (76%), Gaps = 7/435 (1%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
           M+E+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES S+  L  L+KR+K   
Sbjct: 1   MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRYKIPG 60

Query: 60  KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
            PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK  +GSFVY  GKIYKVP
Sbjct: 61  SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120

Query: 120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
           +T+ EAL S LMGLFEKRR RKF +YV  ++E DP++ EG+D  K T R++  K+ L  D
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 180

Query: 180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+  D YL++P  + + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKP--ECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGK 297
           RLSA+YGGTYMLNKP  E  V+   +GKVIGV SEGE A+CK+++CDPSY+ D+V+KVG+
Sbjct: 240 RLSAIYGGTYMLNKPIEEIIVQ---NGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQ 296

Query: 298 VARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTE 357
           V R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   S+AHNVA  G+YIA VST 
Sbjct: 297 VIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTT 356

Query: 358 AETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQD 417
            ET  PE E++P ++LL P+++ F    D  VP +       FIS +YDATTHFE+T  D
Sbjct: 357 VETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESLIFISRTYDATTHFETTCDD 416

Query: 418 VLEMYTKITGKAVDL 432
           +  +Y ++TG   D 
Sbjct: 417 IKNIYKRMTGSEFDF 431

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
449478843	445	PREDICTED: rab GDP dissociation inhibito	1.0	1.0	0.892	0.0
356521229	445	PREDICTED: rab GDP dissociation inhibito	1.0	1.0	0.883	0.0
356524802	445	PREDICTED: rab GDP dissociation inhibito	1.0	1.0	0.878	0.0
225465789	445	PREDICTED: rab GDP dissociation inhibito	0.995	0.995	0.869	0.0
255563304	443	protein with unknown function [Ricinus c	0.993	0.997	0.875	0.0
449438580	469	PREDICTED: rab GDP dissociation inhibito	0.984	0.933	0.888	0.0
224095804	444	predicted protein [Populus trichocarpa]	0.997	1.0	0.869	0.0
357476285	445	Rab-GDP dissociation inhibitor [Medicago	0.979	0.979	0.880	0.0
146272052	445	Rab-GDP dissociation inhibitor [Solanum	1.0	1.0	0.851	0.0
297806981	445	rab GDP-dissociation inhibitor [Arabidop	1.0	1.0	0.862	0.0

>gi|449478843|ref|XP_004155432.1| PREDICTED: rab GDP dissociation inhibitor alpha-like [Cucumis sativus]

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/445 (89%), Positives = 425/445 (95%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDK 60
           MDE+YDVIVLGTGLKECILSG+LSVDGLKVLHMDRN YYGG STSLNL QLWKRF+G+DK
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGASTSLNLIQLWKRFRGNDK 60

Query: 61  PPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA 120
           PPE+LG SKEYNVDMIPKFMMANGGLVR+LIHTDVTKYL+FKAVDGSFVYNKGK+YKVPA
Sbjct: 61  PPEQLGLSKEYNVDMIPKFMMANGGLVRVLIHTDVTKYLHFKAVDGSFVYNKGKVYKVPA 120

Query: 121 TDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDT 180
           TDVEALKSPLMGLFEKRRARKFFIYVQ+Y+E DPKSHEGLDL+KVTARE+I+KYGLEDDT
Sbjct: 121 TDVEALKSPLMGLFEKRRARKFFIYVQDYDESDPKSHEGLDLSKVTARELITKYGLEDDT 180

Query: 181 IDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHALALH +DSYL  PA DFVKR+KLYAESLARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 IDFIGHALALHFDDSYLNGPASDFVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVAR 300
           LSAVYGGTYMLNKPECKVEF GDGK  GVTSEGETAKCKKVVCDPSYLPDKV+KVGKVAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFAGDGKAYGVTSEGETAKCKKVVCDPSYLPDKVKKVGKVAR 300

Query: 301 AICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAET 360
           A+CIM+HPIPDTNDSHS QVILPQKQLGRKSDMYLFCCSYAHNVAP G++IAFVSTEAET
Sbjct: 301 AVCIMSHPIPDTNDSHSAQVILPQKQLGRKSDMYLFCCSYAHNVAPKGKFIAFVSTEAET 360

Query: 361 DNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLE 420
           DNPEVELKPGIDLLGPVDEIF++TYDR+VP NNHE D+CFISTSYD +THFESTV DVL 
Sbjct: 361 DNPEVELKPGIDLLGPVDEIFYETYDRYVPINNHETDNCFISTSYDGSTHFESTVTDVLA 420

Query: 421 MYTKITGKAVDLSVDLSAASATAEQ 445
           MY+KITGKAVDLSVDLSAASA +E+
Sbjct: 421 MYSKITGKAVDLSVDLSAASAASEE 445

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521229|ref|XP_003529259.1| PREDICTED: rab GDP dissociation inhibitor alpha-like [Glycine max]

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/445 (88%), Positives = 421/445 (94%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDK 60
           MDE+YDVIVLGTGLKECILSG+LSVDGLKVLHMDRN YYGG STSLNLTQLWKRF+GDD 
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGASTSLNLTQLWKRFRGDDT 60

Query: 61  PPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA 120
           P E LGSS+EYNVDMIPKFMMANG LVR+LIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA
Sbjct: 61  PSENLGSSREYNVDMIPKFMMANGALVRVLIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA 120

Query: 121 TDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDT 180
           TDVEALKSPLMGLFEKRRARKFFIYVQ+YE +DPKSHEGLDLN+VTAR++ISKYGLEDDT
Sbjct: 121 TDVEALKSPLMGLFEKRRARKFFIYVQDYETNDPKSHEGLDLNQVTARQLISKYGLEDDT 180

Query: 181 IDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALH +DSYL+EPA DFV R+K+YAESLARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 VDFIGHALALHRDDSYLDEPAKDFVDRVKIYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVAR 300
           LSAVYGGTYMLNKPECKVEFD +GK IGVTSEGETAKCKKVVCDPSYL DKVQKVGKVAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDDNGKAIGVTSEGETAKCKKVVCDPSYLSDKVQKVGKVAR 300

Query: 301 AICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAET 360
           AICIM+HPIPDTNDSHS QVILPQKQLGRKSDMYLFCCSYAHNVA  G+YIAFV+TEAET
Sbjct: 301 AICIMSHPIPDTNDSHSAQVILPQKQLGRKSDMYLFCCSYAHNVAAKGKYIAFVTTEAET 360

Query: 361 DNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLE 420
           D PEVELKPGIDLLGPVDEIF+D YDRF P N+HEAD CFISTSYDATTHFE+TV+DV+E
Sbjct: 361 DQPEVELKPGIDLLGPVDEIFYDIYDRFEPCNDHEADGCFISTSYDATTHFETTVKDVVE 420

Query: 421 MYTKITGKAVDLSVDLSAASATAEQ 445
           +Y+KITGK +DLSVDLSAASA  E+
Sbjct: 421 LYSKITGKVLDLSVDLSAASAATEE 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524802|ref|XP_003531017.1| PREDICTED: rab GDP dissociation inhibitor alpha-like [Glycine max]

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/445 (87%), Positives = 422/445 (94%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDK 60
           MDE+YDVIVLGTGLKECILSG+LSVDGLKVLHMDRN YYGG STSLNLTQLWKRF+GDD 
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGASTSLNLTQLWKRFRGDDT 60

Query: 61  PPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA 120
           P E LGSS+EYNVDMIPKFMMANG LVR+LIHT+VTKYLNFKAVDGSFVYNKGKIYKVPA
Sbjct: 61  PAENLGSSREYNVDMIPKFMMANGALVRVLIHTNVTKYLNFKAVDGSFVYNKGKIYKVPA 120

Query: 121 TDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDT 180
           TDVEALKSPLMGLFEKRRARKFFIYVQ+YE +DPKSHEGLDLN+VTAR++ISKYGLEDDT
Sbjct: 121 TDVEALKSPLMGLFEKRRARKFFIYVQDYETNDPKSHEGLDLNQVTARQLISKYGLEDDT 180

Query: 181 IDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALH +D+YL+EPA DFV R+K+YAESLARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 VDFIGHALALHRDDNYLDEPAKDFVDRVKIYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVAR 300
           LSAVYGGTYMLNKPECKVEFD +GK IGVTSEGETAKCKK+VCDPSYL DKVQKVGKVAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDENGKAIGVTSEGETAKCKKIVCDPSYLSDKVQKVGKVAR 300

Query: 301 AICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAET 360
           AICIM+HPIPDT DSHS QVILPQKQLGRKSDMYLFCCSYAHNVA  G+YIAFV+TEAET
Sbjct: 301 AICIMSHPIPDTKDSHSAQVILPQKQLGRKSDMYLFCCSYAHNVAAKGKYIAFVTTEAET 360

Query: 361 DNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLE 420
           DNPEVELKPGIDLLGPVDEIF+DTYDRF P N+HEAD CFISTSYDATTHFE+TV+DV+E
Sbjct: 361 DNPEVELKPGIDLLGPVDEIFYDTYDRFEPCNDHEADGCFISTSYDATTHFETTVKDVVE 420

Query: 421 MYTKITGKAVDLSVDLSAASATAEQ 445
           +Y+KITGK +DLSVDLSAASA  E+
Sbjct: 421 LYSKITGKVLDLSVDLSAASAATEE 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465789|ref|XP_002268877.1| PREDICTED: rab GDP dissociation inhibitor alpha [Vitis vinifera] gi|296087426|emb|CBI34015.3| unnamed protein product [Vitis vinifera]

 Score =  822 bits (2124), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/443 (86%), Positives = 423/443 (95%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDK 60
           MDE+YDVIVLGTGLKECILSG+LSV+G KVLHMDRN YYGGES+SL+L QLW+RF+G+D+
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVNGFKVLHMDRNEYYGGESSSLSLKQLWQRFRGNDQ 60

Query: 61  PPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA 120
           PPE LGSS+EYNVDMIPKFMMANGGLVR+LIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA
Sbjct: 61  PPESLGSSREYNVDMIPKFMMANGGLVRVLIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA 120

Query: 121 TDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDT 180
           TDVEALKSPLMGLFEKRRARKFFIYVQ+YEE+DPKSHEG+DLNKVTAR++ISKYGLEDDT
Sbjct: 121 TDVEALKSPLMGLFEKRRARKFFIYVQDYEENDPKSHEGMDLNKVTARDLISKYGLEDDT 180

Query: 181 IDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGH+LALH +DSYL+EPAM+FVKR+KLYAESLARFQGGSPYIYP+YGLGELPQAFAR
Sbjct: 181 IDFIGHSLALHSDDSYLDEPAMEFVKRMKLYAESLARFQGGSPYIYPMYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVAR 300
           LSAVYGGTYMLNKPECKVEFD +GK  GVTSEGETAKCKKVVCDPSYLPDKVQKVGKVAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDENGKAFGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVAR 300

Query: 301 AICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAET 360
           AICIM+H IPDTNDSHS QVILPQKQLGRKSDMYLFCCSY+HNVAP G+YIAFV+TEAET
Sbjct: 301 AICIMSHSIPDTNDSHSVQVILPQKQLGRKSDMYLFCCSYSHNVAPKGKYIAFVTTEAET 360

Query: 361 DNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLE 420
           D PEVELK G+DLLGPVDEIF++TYDRF P N+HE DHCFISTSYDATTHFESTV++V+ 
Sbjct: 361 DQPEVELKRGVDLLGPVDEIFYETYDRFEPKNDHEVDHCFISTSYDATTHFESTVKNVIA 420

Query: 421 MYTKITGKAVDLSVDLSAASATA 443
           MY+KITG+ +DL+VDLSAASA  
Sbjct: 421 MYSKITGEELDLTVDLSAASAAT 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563304|ref|XP_002522655.1| protein with unknown function [Ricinus communis] gi|223538131|gb|EEF39742.1| protein with unknown function [Ricinus communis]

 Score =  822 bits (2122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/442 (87%), Positives = 422/442 (95%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDK 60
           MDE+YDVIVLGTGLKECILSG+LSVDGLKVLHMD+N YYGGES+SLNL QLWKRF+G DK
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDQNDYYGGESSSLNLNQLWKRFRGSDK 60

Query: 61  PPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA 120
           PPE LG SKEYNVDMIPKF++ANG LVR+LIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA
Sbjct: 61  PPESLGPSKEYNVDMIPKFIIANGNLVRVLIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA 120

Query: 121 TDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDT 180
            DVEALKSPLMGLFEKRRARKFFIYVQ+YE++DPKSHEGLDLNKVTAREIISKYGLEDDT
Sbjct: 121 NDVEALKSPLMGLFEKRRARKFFIYVQDYEDNDPKSHEGLDLNKVTAREIISKYGLEDDT 180

Query: 181 IDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHALALH++DSYL++PA+DFVKR+KLYAESLARFQGGSPYIYP+YGLGELPQAFAR
Sbjct: 181 IDFIGHALALHLDDSYLDQPALDFVKRMKLYAESLARFQGGSPYIYPMYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVAR 300
           LSAVYGGTYMLNKPECKVEFD DGK IGVTSEGETAKCKKVVCDPSYL +KVQKVGKVAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDADGKAIGVTSEGETAKCKKVVCDPSYLSNKVQKVGKVAR 300

Query: 301 AICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAET 360
           AICIM+HPIP+T+DSHS Q+ILPQKQLGRKSDMYLFCCSY+HNVAP G+YIAFV+TEAET
Sbjct: 301 AICIMSHPIPNTSDSHSVQLILPQKQLGRKSDMYLFCCSYSHNVAPRGKYIAFVTTEAET 360

Query: 361 DNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLE 420
           D PEVELKPGIDLLGPVDEI ++TYDR++P NN EAD+CFISTSYDATTHFE+TV DV+ 
Sbjct: 361 DTPEVELKPGIDLLGPVDEILYETYDRYIPANNPEADNCFISTSYDATTHFETTVDDVIA 420

Query: 421 MYTKITGKAVDLSVDLSAASAT 442
           MY+KITGK +DLSVDLSAASA 
Sbjct: 421 MYSKITGKTLDLSVDLSAASAA 442

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438580|ref|XP_004137066.1| PREDICTED: rab GDP dissociation inhibitor alpha-like [Cucumis sativus]

 Score =  821 bits (2121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/438 (88%), Positives = 417/438 (95%)

Query: 8   IVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGS 67
            +LGTGLKECILSG+LSVDGLKVLHMDRN YYGG STSLNL QLWKRF+G+DKPPE+LG 
Sbjct: 32  FLLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGASTSLNLIQLWKRFRGNDKPPEQLGL 91

Query: 68  SKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALK 127
           SKEYNVDMIPKFMMANGGLVR+LIHTDVTKYL+FKAVDGSFVYNKGK+YKVPATDVEALK
Sbjct: 92  SKEYNVDMIPKFMMANGGLVRVLIHTDVTKYLHFKAVDGSFVYNKGKVYKVPATDVEALK 151

Query: 128 SPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGHA 187
           SPLMGLFEKRRARKFFIYVQ+Y+E DPKSHEGLDL+KVTARE+I+KYGLEDDTIDFIGHA
Sbjct: 152 SPLMGLFEKRRARKFFIYVQDYDESDPKSHEGLDLSKVTARELITKYGLEDDTIDFIGHA 211

Query: 188 LALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGG 247
           LALH +DSYL  PA DFVKR+KLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGG
Sbjct: 212 LALHFDDSYLNGPASDFVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGG 271

Query: 248 TYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMNH 307
           TYMLNKPECKVEF GDGK  GVTSEGETAKCKKVVCDPSYLPDKV+KVGKVARA+CIM+H
Sbjct: 272 TYMLNKPECKVEFAGDGKAYGVTSEGETAKCKKVVCDPSYLPDKVKKVGKVARAVCIMSH 331

Query: 308 PIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVEL 367
           PIPDTNDSHS QVILPQKQLGRKSDMYLFCCSYAHNVAP G++IAFVSTEAETDNPEVEL
Sbjct: 332 PIPDTNDSHSAQVILPQKQLGRKSDMYLFCCSYAHNVAPKGKFIAFVSTEAETDNPEVEL 391

Query: 368 KPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLEMYTKITG 427
           KPGIDLLGPVDEIF++TYDR+VP NNHE D+CFISTSYD +THFESTV DVL MY+KITG
Sbjct: 392 KPGIDLLGPVDEIFYETYDRYVPINNHETDNCFISTSYDGSTHFESTVTDVLAMYSKITG 451

Query: 428 KAVDLSVDLSAASATAEQ 445
           KAVDLSVDLSAASA +E+
Sbjct: 452 KAVDLSVDLSAASAASEE 469

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095804|ref|XP_002310487.1| predicted protein [Populus trichocarpa] gi|222853390|gb|EEE90937.1| predicted protein [Populus trichocarpa]

 Score =  818 bits (2112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/444 (86%), Positives = 421/444 (94%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDK 60
           MDE+YDVIVLGTGLKECILSG+LSVDGLKVLHMDRN YYGGESTSLNL QLWKRF+G D 
Sbjct: 1   MDENYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLNQLWKRFRGSDT 60

Query: 61  PPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA 120
           PPE LG+SKEYNVDMIPKF++ANGGLVR+LIHTDVTKYL+FKAVDGSFVYNKGKIYKVPA
Sbjct: 61  PPESLGASKEYNVDMIPKFIIANGGLVRVLIHTDVTKYLHFKAVDGSFVYNKGKIYKVPA 120

Query: 121 TDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDT 180
           TDVEALKSPLMGLFEKRRARKFFIYVQ+YEE+DPKSHEGLDL KVTARE+ISKYGLEDDT
Sbjct: 121 TDVEALKSPLMGLFEKRRARKFFIYVQDYEENDPKSHEGLDLTKVTAREVISKYGLEDDT 180

Query: 181 IDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHALALH++DSYL++PA DFVKR+KLYA+SLARFQGGSPYIYPLYGL ELPQ+FAR
Sbjct: 181 IDFIGHALALHLDDSYLDQPASDFVKRMKLYADSLARFQGGSPYIYPLYGLAELPQSFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVAR 300
           LSAVYGGTYMLNKPECKVEFD  GK IGVTSEGETAKCKKVVCDPSYLP+KV+ VGKVAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDESGKAIGVTSEGETAKCKKVVCDPSYLPNKVKNVGKVAR 300

Query: 301 AICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAET 360
           AICIM+HPIP T+DSHS QVILPQKQLGRKSDMYLFCCSYAHNVAP G++IAFVS EAET
Sbjct: 301 AICIMSHPIPATSDSHSAQVILPQKQLGRKSDMYLFCCSYAHNVAPQGKFIAFVSAEAET 360

Query: 361 DNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLE 420
           DNPE+ELKPGIDLLGPVDEIF++TYDR+VP N  + D+CFISTSYDATTHFE+TVQDV+ 
Sbjct: 361 DNPEIELKPGIDLLGPVDEIFYETYDRYVPINTMKDDNCFISTSYDATTHFETTVQDVIA 420

Query: 421 MYTKITGKAVDLSVDLSAASATAE 444
           MY++ITGK +DLSVDLSAASA AE
Sbjct: 421 MYSEITGKTLDLSVDLSAASAAAE 444

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476285|ref|XP_003608428.1| Rab-GDP dissociation inhibitor [Medicago truncatula] gi|355509483|gb|AES90625.1| Rab-GDP dissociation inhibitor [Medicago truncatula]

 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/436 (88%), Positives = 416/436 (95%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDK 60
           MDE+YDVIVLGTGLKECILSG+LSVDGLKVLHMD+N YYGG STSLNLTQL+KR++GDDK
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDQNDYYGGASTSLNLTQLFKRYRGDDK 60

Query: 61  PPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA 120
           PPE LGSS+EYNVDMIPKFMMANG LVR+LIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA
Sbjct: 61  PPEELGSSREYNVDMIPKFMMANGALVRVLIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA 120

Query: 121 TDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDT 180
           TDVEALKSPLMGLFEKRRARKFFIYVQ+YE +DPKSHEGLDLN+VTAR++ISKYGLEDDT
Sbjct: 121 TDVEALKSPLMGLFEKRRARKFFIYVQDYEANDPKSHEGLDLNQVTARQLISKYGLEDDT 180

Query: 181 IDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALH++DSYL++PA DFV R+K YAESLARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 VDFIGHALALHLDDSYLDKPAKDFVDRVKTYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVAR 300
           LSAVYGGTYMLNKPECKVEFDGDGK IGVTS+GETAKCKKVVCDPSYLPDKVQ VGKVAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDGDGKAIGVTSDGETAKCKKVVCDPSYLPDKVQNVGKVAR 300

Query: 301 AICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAET 360
           AICIM+HPIPDTNDSHS QVILPQKQLGRKSDMYLFCCSYAHNVAP G+YIAFV+TEAET
Sbjct: 301 AICIMSHPIPDTNDSHSAQVILPQKQLGRKSDMYLFCCSYAHNVAPKGKYIAFVTTEAET 360

Query: 361 DNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLE 420
           D P+VELKPGIDLLGPVDEIF+D YDRF PTN+H  D CFISTSYD TTHFE+TV+DV++
Sbjct: 361 DQPQVELKPGIDLLGPVDEIFYDIYDRFEPTNDHATDGCFISTSYDPTTHFETTVKDVVQ 420

Query: 421 MYTKITGKAVDLSVDL 436
           MY+KITGK +DLSVDL
Sbjct: 421 MYSKITGKVLDLSVDL 436

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146272052|emb|CAM97308.1| Rab-GDP dissociation inhibitor [Solanum lycopersicum]

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/445 (85%), Positives = 422/445 (94%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDK 60
           MDE+YDVIVLGTGLKECILSG+LSVDGLKVLHMD+N YYGGES+SLNL QLWKRF+G+D+
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDKNDYYGGESSSLNLIQLWKRFRGNDQ 60

Query: 61  PPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA 120
           PPE LG+SKEYNVDMIPKF MANG LVR+LIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA
Sbjct: 61  PPEELGTSKEYNVDMIPKFAMANGTLVRVLIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA 120

Query: 121 TDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDT 180
           TDVEALKSPLMGLFEKRRARKFF+YVQ++EE DPK+HEG+DLNK+TA+E I+KY LEDDT
Sbjct: 121 TDVEALKSPLMGLFEKRRARKFFLYVQDFEETDPKTHEGMDLNKITAKEFIAKYELEDDT 180

Query: 181 IDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHALAL  +D+YL +PAMDF+KR+KLYAESLARFQ GSPYIYPLYGLGELPQAFAR
Sbjct: 181 IDFIGHALALCTDDNYLAQPAMDFIKRVKLYAESLARFQAGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVAR 300
           LSAVYGGTYMLNKP+CKVEFD  GKV+GVTSEGETAKCKKVVCDPSYLPDKVQKVGKVAR
Sbjct: 241 LSAVYGGTYMLNKPQCKVEFDDGGKVVGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVAR 300

Query: 301 AICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAET 360
           AICIM+HPIP+TNDSHS QVILPQKQLGRKSDMYLFCCSY+HNVAP G+YIAFVSTEAET
Sbjct: 301 AICIMSHPIPNTNDSHSAQVILPQKQLGRKSDMYLFCCSYSHNVAPKGKYIAFVSTEAET 360

Query: 361 DNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLE 420
           D+PE ELKPG+D+LG VDEIF++TYDRF+P+++  AD+CFIS SYD+TTHFESTV DVL+
Sbjct: 361 DDPESELKPGVDILGAVDEIFYETYDRFIPSHDSAADNCFISKSYDSTTHFESTVMDVLD 420

Query: 421 MYTKITGKAVDLSVDLSAASATAEQ 445
           MY+KITGK +DLSVDLSAASATAE+
Sbjct: 421 MYSKITGKVIDLSVDLSAASATAEE 445

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806981|ref|XP_002871374.1| rab GDP-dissociation inhibitor [Arabidopsis lyrata subsp. lyrata] gi|297317211|gb|EFH47633.1| rab GDP-dissociation inhibitor [Arabidopsis lyrata subsp. lyrata]

 Score =  808 bits (2088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/445 (86%), Positives = 415/445 (93%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDK 60
           MDE+YDVIVLGTGLKECILSG+LSVDGLKVLHMDRN YYGGES+SLNLTQLWKRF+G D 
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLTQLWKRFRGSDT 60

Query: 61  PPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA 120
           P E LG+S+EYNVDMIPKF+MANG LV+ LIHTDVTKYLNFKAVDGSFVY KGKIYKVPA
Sbjct: 61  PQENLGASREYNVDMIPKFIMANGLLVQTLIHTDVTKYLNFKAVDGSFVYKKGKIYKVPA 120

Query: 121 TDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDT 180
           TDVEALKSPLMGLFEKRRARKFFIYVQ+Y+E DPKSHEGLDL+KVTAREIISKYGLEDDT
Sbjct: 121 TDVEALKSPLMGLFEKRRARKFFIYVQDYDEKDPKSHEGLDLSKVTAREIISKYGLEDDT 180

Query: 181 IDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHALALH +D YL++PA+DFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 IDFIGHALALHNDDDYLDQPAIDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVAR 300
           LSAVYGGTYMLNKPECKVEFDG GK IGVTS GETAKCKKVVCDPSYL DKV+KVGKV R
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDGSGKAIGVTSAGETAKCKKVVCDPSYLSDKVKKVGKVTR 300

Query: 301 AICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAET 360
           A+CIM+HPIPDTND+HS Q+ILPQKQLGRKSDMYLFCCSYAHNVAP G+YIAFVS EAET
Sbjct: 301 AVCIMSHPIPDTNDAHSVQIILPQKQLGRKSDMYLFCCSYAHNVAPKGKYIAFVSAEAET 360

Query: 361 DNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLE 420
           DNPE ELKPGI+LLG +DEIF+ +Y+ +VPTNN E D+CFIS +YDATTHFESTV DVL+
Sbjct: 361 DNPEEELKPGIELLGSIDEIFYHSYETYVPTNNQEEDNCFISATYDATTHFESTVVDVLD 420

Query: 421 MYTKITGKAVDLSVDLSAASATAEQ 445
           MYTKITGK +DLSVDLSAASA AE 
Sbjct: 421 MYTKITGKTLDLSVDLSAASAAAEN 445

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
TAIR|locus:2144741	445	GDI "RAB GDP-dissociation inhi	0.997	0.997	0.864	1.9e-211
TAIR|locus:2080527	444	GDI2 "RAB GDP dissociation inh	0.997	1.0	0.786	2.4e-195
TAIR|locus:2051839	445	GDI1 "guanosine nucleotide dip	1.0	1.0	0.779	1e-194
DICTYBASE|DDB_G0268034	454	DDB_G0268034 "Rab GDP dissocia	0.973	0.953	0.614	2e-143
ZFIN|ZDB-GENE-050522-504	447	gdi1 "GDP dissociation inhibit	0.964	0.959	0.587	5.3e-143
MGI|MGI:99846	447	Gdi1 "guanosine diphosphate (G	0.964	0.959	0.581	1.1e-140
UNIPROTKB|P21856	447	GDI1 "Rab GDP dissociation inh	0.964	0.959	0.578	2.4e-140
UNIPROTKB|F1PWQ0	447	GDI1 "Rab GDP dissociation inh	0.964	0.959	0.578	3e-140
UNIPROTKB|I3L893	447	GDI1 "Uncharacterized protein"	0.964	0.959	0.578	3e-140
UNIPROTKB|O97555	447	GDI1 "Rab GDP dissociation inh	0.964	0.959	0.576	3.9e-140

TAIR|locus:2144741 GDI "RAB GDP-dissociation inhibitor" [Arabidopsis thaliana (taxid:3702)]

 Score = 2044 (724.6 bits), Expect = 1.9e-211, P = 1.9e-211
 Identities = 384/444 (86%), Positives = 414/444 (93%)

Query:     1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDK 60
             MDE+YDVIVLGTGLKECILSG+LSVDGLKVLHMDRN YYGGES+SLNLTQLWKRF+G D 
Sbjct:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLTQLWKRFRGSDT 60

Query:    61 PPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA 120
             P E LG+S+EYNVDMIPKF+MANG LV+ LIHTDVTKYLNFKAVDGSFVY KGKIYKVPA
Sbjct:    61 PEENLGASREYNVDMIPKFIMANGLLVQTLIHTDVTKYLNFKAVDGSFVYKKGKIYKVPA 120

Query:   121 TDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDT 180
             TDVEALKSPLMGLFEKRRARKFFIYVQ+Y+E DPKSHEGLDL+KVTAREIISKYGLEDDT
Sbjct:   121 TDVEALKSPLMGLFEKRRARKFFIYVQDYDEKDPKSHEGLDLSKVTAREIISKYGLEDDT 180

Query:   181 IDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240
             IDFIGHALALH +D YL++PA+DFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR
Sbjct:   181 IDFIGHALALHNDDDYLDQPAIDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query:   241 LSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVAR 300
             LSAVYGGTYMLNKPECKVEFDG GK IGVTS GETAKCKKVVCDPSYL +KV+KVGKV R
Sbjct:   241 LSAVYGGTYMLNKPECKVEFDGSGKAIGVTSAGETAKCKKVVCDPSYLSEKVKKVGKVTR 300

Query:   301 AICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAET 360
             A+CIM+HPIPDTND+HS Q+ILPQKQLGRKSDMYLFCCSYAHNVAP G+YIAFVS EAET
Sbjct:   301 AVCIMSHPIPDTNDAHSVQIILPQKQLGRKSDMYLFCCSYAHNVAPKGKYIAFVSAEAET 360

Query:   361 DNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLE 420
             DNPE ELKPGI+LLGP DEIF+ +YD +VPTN  E D+CFIS +YDATTHFESTV DVL+
Sbjct:   361 DNPEEELKPGIELLGPTDEIFYHSYDTYVPTNIQEEDNCFISATYDATTHFESTVVDVLD 420

Query:   421 MYTKITGKAVDLSVDLSAASATAE 444
             MYTKITGK +DLSVDLSAASA AE
Sbjct:   421 MYTKITGKTLDLSVDLSAASAAAE 444

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA;ISS

GO:0048046 "apoplast" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2080527 GDI2 "RAB GDP dissociation inhibitor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1892 (671.1 bits), Expect = 2.4e-195, P = 2.4e-195
 Identities = 349/444 (78%), Positives = 401/444 (90%)

Query:     1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDK 60
             MDE+Y+VIVLGTGLKECILSG+LSVDG+KVLHMDRN YYGGESTSLNL QLWK+F+G++K
Sbjct:     1 MDEEYEVIVLGTGLKECILSGLLSVDGVKVLHMDRNDYYGGESTSLNLNQLWKKFRGEEK 60

Query:    61 PPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA 120
              PE LG+S++YNVDM+PKFMM NG LVR LIHTDVTKYL+FKAVDGS+V+ KGK+ KVPA
Sbjct:    61 APEHLGASRDYNVDMMPKFMMGNGKLVRTLIHTDVTKYLSFKAVDGSYVFVKGKVQKVPA 120

Query:   121 TDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDT 180
             T +EALKS LMG+FEKRRA KFF +VQEY+E DPK+H+G+DL +VT +E+I+KYGL+ +T
Sbjct:   121 TPMEALKSSLMGIFEKRRAGKFFSFVQEYDEKDPKTHDGMDLTRVTTKELIAKYGLDGNT 180

Query:   181 IDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240
             IDFIGHA+ALH ND +L++PA D V R+KLYAESLARFQG SPYIYPLYGLGELPQAFAR
Sbjct:   181 IDFIGHAVALHTNDQHLDQPAFDTVMRMKLYAESLARFQGTSPYIYPLYGLGELPQAFAR 240

Query:   241 LSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVAR 300
             LSAVYGGTYMLNKPECKVEFD  GKVIGVTSEGETAKCKK+VCDPSYLP+KV+K+G+VAR
Sbjct:   241 LSAVYGGTYMLNKPECKVEFDEGGKVIGVTSEGETAKCKKIVCDPSYLPNKVRKIGRVAR 300

Query:   301 AICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAET 360
             AI IM+HPIP+TNDSHS QVI+PQKQL RKSDMY+FCCSY+HNVAP G++IAFVST+AET
Sbjct:   301 AIAIMSHPIPNTNDSHSVQVIIPQKQLARKSDMYVFCCSYSHNVAPKGKFIAFVSTDAET 360

Query:   361 DNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLE 420
             DNP+ ELKPG DLLGPVDEIFFD YDR+ P N  E D+CFISTSYDATTHFE+TV DVL 
Sbjct:   361 DNPQTELKPGTDLLGPVDEIFFDMYDRYEPVNEPELDNCFISTSYDATTHFETTVADVLN 420

Query:   421 MYTKITGKAVDLSVDLSAASATAE 444
             MYT ITGK +DLSVDLSAASA  E
Sbjct:   421 MYTLITGKQLDLSVDLSAASAAEE 444

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0042732 "D-xylose metabolic process" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

GO:0051049 "regulation of transport" evidence=RCA

TAIR|locus:2051839 GDI1 "guanosine nucleotide diphosphate dissociation inhibitor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1886 (669.0 bits), Expect = 1.0e-194, P = 1.0e-194
 Identities = 347/445 (77%), Positives = 404/445 (90%)

Query:     1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDK 60
             MDE+Y+VIVLGTGLKECILSG+LSVDGLKVLHMDRN YYGGESTSLNL QLWK+F+G++K
Sbjct:     1 MDEEYEVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLNQLWKKFRGEEK 60

Query:    61 PPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA 120
              P  LGSS++YNVDM+PKFMMANG LVR+LIHTDVTKYL+FKAVDGS+V+ +GK+ KVPA
Sbjct:    61 APAHLGSSRDYNVDMMPKFMMANGKLVRVLIHTDVTKYLSFKAVDGSYVFVQGKVQKVPA 120

Query:   121 TDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDT 180
             T +EALKSPLMG+FEKRRA KFF YVQEY+E DPK+H+G+DL +VT +++I+K+GL++DT
Sbjct:   121 TPMEALKSPLMGIFEKRRAGKFFSYVQEYDEKDPKTHDGMDLRRVTTKDLIAKFGLKEDT 180

Query:   181 IDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240
             IDFIGHA+ALH ND++L +PA D V R+KLYAESLARFQGGSPYIYPLYGLGELPQAFAR
Sbjct:   181 IDFIGHAVALHCNDNHLHQPAYDTVMRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query:   241 LSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVAR 300
             LSAVYGGTYMLNKPECKVEFD +GKV GVTSEGETAKCKKVVCDPSYL +KV+K+G+VAR
Sbjct:   241 LSAVYGGTYMLNKPECKVEFDEEGKVSGVTSEGETAKCKKVVCDPSYLTNKVRKIGRVAR 300

Query:   301 AICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAET 360
             AI IM+HPIP+TNDS S QVILPQKQLGRKSDMY+FCCSY+HNVAP G++IAFVST+AET
Sbjct:   301 AIAIMSHPIPNTNDSQSVQVILPQKQLGRKSDMYVFCCSYSHNVAPKGKFIAFVSTDAET 360

Query:   361 DNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVLE 420
             DNP+ EL+PGIDLLGPVDE+FFD YDR+ P N    D+CFISTSYDATTHF++TV DVL 
Sbjct:   361 DNPQTELQPGIDLLGPVDELFFDIYDRYEPVNEPTLDNCFISTSYDATTHFDTTVVDVLN 420

Query:   421 MYTKITGKAVDLSVDLSAASATAEQ 445
             MY  ITGK +DLSVDL+AASA  E+
Sbjct:   421 MYKLITGKELDLSVDLNAASAAEEE 445

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA;IGI

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048227 "plasma membrane to endosome transport" evidence=IGI

DICTYBASE|DDB_G0268034 DDB_G0268034 "Rab GDP dissociation inhibitor alpha" [Dictyostelium discoideum (taxid:44689)]

 Score = 1402 (498.6 bits), Expect = 2.0e-143, P = 2.0e-143
 Identities = 268/436 (61%), Positives = 338/436 (77%)

Query:     1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDK 60
             MDE YDVIVLGTGLKECI+SG+LSVDG KVLHMDRN YYGGES SLN+ QLW++  G +K
Sbjct:     1 MDEHYDVIVLGTGLKECIISGLLSVDGKKVLHMDRNGYYGGESASLNMNQLWEKSHGKEK 60

Query:    61 P-PERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
               PE LGSS++YNVD+IPKF++++G LV++L+HTDVT+YL+FK VDGS+VY+ GKI KVP
Sbjct:    61 KAPETLGSSRDYNVDLIPKFILSSGLLVKMLLHTDVTRYLDFKVVDGSYVYSSGKINKVP 120

Query:   120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
             +TD EAL S L+GL +K   RKFFI+VQ YEE++P +H+GL+L   T   +  KYGL ++
Sbjct:   121 STDTEALTSSLVGLLDKLPLRKFFIFVQNYEENNPATHDGLNLKITTMDALFKKYGLREN 180

Query:   180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
              +DFIGHALAL+++DSYL++PA D + R+KLYA+SLAR+   SPYIYPLYGLGELPQAFA
Sbjct:   181 IVDFIGHALALYLDDSYLQQPAHDTIMRMKLYADSLARYSK-SPYIYPLYGLGELPQAFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
             RLSA+YGGTYMLNKP   + FD + K+I VTSEGET  C K+VCDPSY P+KVQK GK+ 
Sbjct:   240 RLSAIYGGTYMLNKPIENIVFDEEKKIIKVTSEGETVTCDKIVCDPSYFPNKVQKKGKII 299

Query:   300 RAICIMNHPIPDTNDS-HSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEA 358
             R+ICI+N PIP  +    S Q+I+PQKQ+ R+SDMY+   S AH V P G+YIA VS   
Sbjct:   300 RSICILNGPIPSADKKFESLQIIIPQKQVKRQSDMYVGVMSSAHCVCPKGKYIAIVSATV 359

Query:   359 ETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDV 418
             ET+ PE EL P   LLGP+ E F    D   P  +  AD+ FIS SYDAT+HFE+T +DV
Sbjct:   360 ETNEPEKELAPAYALLGPIQEKFVYISDFIEPIADGTADNVFISKSYDATSHFETTCEDV 419

Query:   419 LEMYTKITGKAVDLSV 434
             ++MY +ITGK + L+V
Sbjct:   420 MDMYKRITGKDLVLTV 435

GO:0015031 "protein transport" evidence=IEA

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-050522-504 gdi1 "GDP dissociation inhibitor 1" [Danio rerio (taxid:7955)]

 Score = 1398 (497.2 bits), Expect = 5.3e-143, P = 5.3e-143
 Identities = 254/432 (58%), Positives = 337/432 (78%)

Query:     1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
             MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF   D
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFGISD 60

Query:    60 KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
              PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSFVY  GKIYKVP
Sbjct:    61 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
             +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    T  E+  K+ L  D
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPKLTTMGEVYKKFDLGQD 180

Query:   180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+  D YLE+P ++ + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLEQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
             RLSA+YGGTYMLNKP  ++  +G G V+GV SEGE A+CK+++CDPSY+P++V KVG+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDEIVMEG-GHVVGVKSEGEVARCKQLICDPSYIPERVHKVGQVV 298

Query:   300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
             R IC+++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA VST  E
Sbjct:   299 RVICVLSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIVSTTVE 358

Query:   360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
             T +PE E++P ++LL P+D+ F    D + PT++      F S SYDATTHFE+T  D+ 
Sbjct:   359 TSDPEAEIEPALELLEPIDQKFVAISDMYEPTDDGTESQVFASRSYDATTHFETTCNDIK 418

Query:   420 EMYTKITGKAVD 431
             ++Y ++TG   D
Sbjct:   419 DIYKRMTGSDFD 430

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

MGI|MGI:99846 Gdi1 "guanosine diphosphate (GDP) dissociation inhibitor 1" [Mus musculus (taxid:10090)]

 Score = 1376 (489.4 bits), Expect = 1.1e-140, P = 1.1e-140
 Identities = 251/432 (58%), Positives = 336/432 (77%)

Query:     1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
             MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF+  +
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQILE 60

Query:    60 KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
              PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSFVY  GKIYKVP
Sbjct:    61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
             +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+  D YL++P ++ + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
             RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+VQK G+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVI 298

Query:   300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
             R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA  ST  E
Sbjct:   299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query:   360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
             T  PE E++P ++LL P+D+ F    D + P ++      F S SYDATTHFE+T  D+ 
Sbjct:   359 TAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIK 418

Query:   420 EMYTKITGKAVD 431
             ++Y ++ G A D
Sbjct:   419 DIYKRMAGSAFD 430

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=ISO

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=ISO

GO:0030496 "midbody" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0050771 "negative regulation of axonogenesis" evidence=ISO

GO:0051592 "response to calcium ion" evidence=ISO

UNIPROTKB|P21856 GDI1 "Rab GDP dissociation inhibitor alpha" [Bos taurus (taxid:9913)]

 Score = 1373 (488.4 bits), Expect = 2.4e-140, P = 2.4e-140
 Identities = 250/432 (57%), Positives = 337/432 (78%)

Query:     1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
             MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF+  +
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
              PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSFVY  GKIYKVP
Sbjct:    61 GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
             +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+  D YL++P ++ + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
             RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+V+K G+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 298

Query:   300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
             R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA  ST  E
Sbjct:   299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query:   360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
             T +PE E++P ++LL P+D+ F    D + P ++      F S SYDATTHFE+T  D+ 
Sbjct:   359 TTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIK 418

Query:   420 EMYTKITGKAVD 431
             ++Y ++ G A D
Sbjct:   419 DIYKRMAGSAFD 430

GO:0007264 "small GTPase mediated signal transduction" evidence=ISS

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=ISS;IDA

GO:0050771 "negative regulation of axonogenesis" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0030496 "midbody" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PWQ0 GDI1 "Rab GDP dissociation inhibitor alpha" [Canis lupus familiaris (taxid:9615)]

 Score = 1372 (488.0 bits), Expect = 3.0e-140, P = 3.0e-140
 Identities = 250/432 (57%), Positives = 336/432 (77%)

Query:     1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
             MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF+  +
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
              PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSFVY  GKIYKVP
Sbjct:    61 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
             +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+  D YL++P ++ + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
             RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+V+K G+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query:   300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
             R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA  ST  E
Sbjct:   299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query:   360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
             T  PE E++P ++LL P+D+ F    D + P ++      F S SYDATTHFE+T  D+ 
Sbjct:   359 TAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIK 418

Query:   420 EMYTKITGKAVD 431
             ++Y ++ G A D
Sbjct:   419 DIYKRMAGSAFD 430

GO:0015031 "protein transport" evidence=IEA

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA

UNIPROTKB|I3L893 GDI1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1372 (488.0 bits), Expect = 3.0e-140, P = 3.0e-140
 Identities = 250/432 (57%), Positives = 336/432 (77%)

Query:     1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
             MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF+  +
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
              PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSFVY  GKIYKVP
Sbjct:    61 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
             +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+  D YL++P ++ + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
             RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+V+K G+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 298

Query:   300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
             R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA  ST  E
Sbjct:   299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query:   360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
             T  PE E++P ++LL P+D+ F    D + P ++      F S SYDATTHFE+T  D+ 
Sbjct:   359 TAEPEKEVEPALELLEPIDQKFVAISDLYEPVDDGSESQVFCSCSYDATTHFETTCNDIK 418

Query:   420 EMYTKITGKAVD 431
             ++Y ++ G A D
Sbjct:   419 DIYKRMVGSAFD 430

GO:0030496 "midbody" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA

UNIPROTKB|O97555 GDI1 "Rab GDP dissociation inhibitor alpha" [Canis lupus familiaris (taxid:9615)]

 Score = 1371 (487.7 bits), Expect = 3.9e-140, P = 3.9e-140
 Identities = 249/432 (57%), Positives = 336/432 (77%)

Query:     1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
             MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF+  +
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
              PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSF+Y  GKIYKVP
Sbjct:    61 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFIYKGGKIYKVP 120

Query:   120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
             +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+  D YL++P ++ + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
             RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+V+K G+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query:   300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
             R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA  ST  E
Sbjct:   299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358

Query:   360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
             T  PE E++P ++LL P+D+ F    D + P ++      F S SYDATTHFE+T  D+ 
Sbjct:   359 TAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIK 418

Query:   420 EMYTKITGKAVD 431
             ++Y ++ G A D
Sbjct:   419 DIYKRMAGSAFD 430

GO:0050771 "negative regulation of axonogenesis" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P50398	GDIA_RAT	No assigned EC number	0.5773	0.9662	0.9619	yes	no
P50396	GDIA_MOUSE	No assigned EC number	0.5796	0.9662	0.9619	yes	no
P31150	GDIA_HUMAN	No assigned EC number	0.5796	0.9662	0.9619	yes	no
Q5RCE1	GDIB_PONAB	No assigned EC number	0.5839	0.9617	0.9617	yes	no
P39958	GDI1_YEAST	No assigned EC number	0.5273	0.9685	0.9556	yes	no
O97555	GDIA_CANFA	No assigned EC number	0.5750	0.9662	0.9619	yes	no
Q10305	GDI1_SCHPO	No assigned EC number	0.5456	0.9573	0.9681	yes	no
P21856	GDIA_BOVIN	No assigned EC number	0.5773	0.9662	0.9619	yes	no
Q8HXX7	GDIA_MACFA	No assigned EC number	0.5773	0.9662	0.9619	N/A	no
Q7YQM0	GDIA_PONPY	No assigned EC number	0.5773	0.9662	0.9619	N/A	no
P60028	GDIA_PANTR	No assigned EC number	0.5796	0.9662	0.9619	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	445
pfam00996	439	pfam00996, GDI, GDP dissociation inhibitor	0.0
PTZ00363	443	PTZ00363, PTZ00363, rab-GDP dissociation inhibitor	0.0
COG5044	434	COG5044, MRS6, RAB proteins geranylgeranyltransfer	1e-136

>gnl|CDD|216232 pfam00996, GDI, GDP dissociation inhibitor

 Score =  748 bits (1934), Expect = 0.0
 Identities = 290/434 (66%), Positives = 362/434 (83%), Gaps = 2/434 (0%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGD-D 59
           MDE+YDVIVLGTGLKECILSG+LSVDG KVLH+DRN YYGGES SL+L QL+ RF+G  +
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASLSLEQLYARFRGGEE 60

Query: 60  KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
           KPP +LG S+++NVD+IPKF+MANG LV++LIHTDVT+YL FKAV+GS+VY  GKI+KVP
Sbjct: 61  KPPSKLGRSRDWNVDLIPKFLMANGELVKLLIHTDVTRYLEFKAVEGSYVYKGGKIHKVP 120

Query: 120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
           A ++EAL SPLMG+FEKRR RKF  YVQ+Y+EDDPK+H+GLD  K T  E+  K+GL+++
Sbjct: 121 ANEMEALSSPLMGIFEKRRFRKFLTYVQDYDEDDPKTHDGLDPRKRTMLEVYKKFGLDEN 180

Query: 180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
           TIDFIGHALAL+ +D YL +PA+  V+RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 TIDFIGHALALYRDDDYLNQPALPTVERIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
           RLSA+YGGTYMLNKP  ++ +D +GKV+GV S GE A+ K+V+CDPSY PDKV+KVG+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDEIVYDENGKVVGVKSGGEVARAKQVICDPSYFPDKVRKVGQVI 299

Query: 300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
           RAICI++HPIP+TND+ S Q+I+PQ Q+GRKSD+Y+ CCSYAHNV P G+YIA VST  E
Sbjct: 300 RAICILSHPIPNTNDAGSVQIIIPQNQVGRKSDIYISCCSYAHNVCPKGKYIAIVSTTVE 359

Query: 360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
           T+NPE EL PG+DLLGP+DE F    D + PT++   D  FIS SYDATTHFE+T  DVL
Sbjct: 360 TENPESELAPGLDLLGPIDEKFVKISDLYEPTDDGSEDQIFISQSYDATTHFETTCNDVL 419

Query: 420 EMYTKITGKAVDLS 433
           +++ + TGKA+D S
Sbjct: 420 DIFKRYTGKALDFS 433

Length = 439

>gnl|CDD|185577 PTZ00363, PTZ00363, rab-GDP dissociation inhibitor; Provisional

 Score =  719 bits (1858), Expect = 0.0
 Identities = 273/436 (62%), Positives = 351/436 (80%), Gaps = 3/436 (0%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDK 60
           MDE YDVIV GTGLKECILSG+LSV+G KVLHMDRN YYGGES SLNLTQL+K+FK  + 
Sbjct: 1   MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGET 60

Query: 61  PPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVY-NKGKIYKVP 119
           PPE LG ++++NVD+IPKF+MA+G LV+IL+HTDVT+YL FK +DGS+VY  +GKI+KVP
Sbjct: 61  PPESLGRNRDWNVDLIPKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVP 120

Query: 120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
           ATD+EAL SPLMG FEK R + F  YV  Y+E+DP++H+GL+L  +T  ++  K+GLED+
Sbjct: 121 ATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKGLNLKTMTMAQLYKKFGLEDN 180

Query: 180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
           TIDF+GHA+AL+ ND YL +PA++ V RIKLY +SL+R+ G SP+IYPLYGLG LPQAF+
Sbjct: 181 TIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRY-GKSPFIYPLYGLGGLPQAFS 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGV-TSEGETAKCKKVVCDPSYLPDKVQKVGKV 298
           RL A+YGGTYMLN P  +V FD +GKV GV +  GE AKCK V+CDPSY PDKV+KVGKV
Sbjct: 240 RLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDKVKKVGKV 299

Query: 299 ARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEA 358
            R ICI+NHPIP+TN+++SCQ+I+PQKQLGRK+D+Y+   S  H V P G+YIA +ST  
Sbjct: 300 IRCICILNHPIPNTNNANSCQIIIPQKQLGRKNDIYIMLVSSNHGVCPKGKYIAIISTTV 359

Query: 359 ETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDV 418
           ET+NPE E++P + LLGP++E F    D + PT + + D+ FIS SYDAT+HFES  +DV
Sbjct: 360 ETNNPEKEIEPALKLLGPIEEKFVSISDLYEPTEDGKKDNIFISKSYDATSHFESATEDV 419

Query: 419 LEMYTKITGKAVDLSV 434
           L++Y +ITGK +DL+ 
Sbjct: 420 LDLYKRITGKDLDLTN 435

Length = 443

>gnl|CDD|227377 COG5044, MRS6, RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

 Score =  396 bits (1020), Expect = e-136
 Identities = 188/441 (42%), Positives = 257/441 (58%), Gaps = 15/441 (3%)

Query: 1   MDE--DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGD 58
           MDE   YDVI+LGTGL+E ILS  LS DG  VLH+D+N YYG  S SL LTQL K F   
Sbjct: 1   MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDEC 60

Query: 59  DKPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKV 118
           +K P + G  ++ N+D+IPKF+ AN  L++ILI T VT+YL FK + GSF+Y  GKIYKV
Sbjct: 61  EKRPSKGGGDRDLNIDLIPKFLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKV 120

Query: 119 PATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLED 178
           P  + E   SPL+ LFEKRR  +F  +V  Y E    + + L  +K T   +  K+GL  
Sbjct: 121 PYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAE-QKSTLQELYESKDTMEFLFEKFGLSG 179

Query: 179 DTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAF 238
            T +FIGH +AL ++   L+ PA + ++RI  Y  S   + G SPY+YP YGLGEL Q F
Sbjct: 180 ATEEFIGHGIALSLD---LDIPAREALERILRYMRSFGDY-GKSPYLYPRYGLGELSQGF 235

Query: 239 ARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVG-- 296
           AR SAVYGGTYMLN+     E +    V  V     T K  K++  P+Y  +  + VG  
Sbjct: 236 ARSSAVYGGTYMLNQA--IDEINETKDVETVDKGSLTQKAGKIISSPTYFREDSKSVGQF 293

Query: 297 -KVARAICIMN-HPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFV 354
            ++ RAICI+  HP+P T    S Q+I P   L RK+D+ +        V P G Y+A++
Sbjct: 294 YRIIRAICILLVHPVPFTTGLDSLQIIFPPFSLKRKNDIQVAGLGSGSEVCPEGYYLAYI 353

Query: 355 STEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFEST 414
           ST  ET  PE E+   ++LLGP  E F D  + + P  +   +  ++S S D ++HFES 
Sbjct: 354 STIDETPTPEDEILAALELLGPSVEKFVDVEEIYQPDED--TNQVYLSDSVDESSHFESL 411

Query: 415 VQDVLEMYTKITGKAVDLSVD 435
             ++  +Y + TG  +     
Sbjct: 412 TYEIKGIYKRFTGTPLVFDQR 432

Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	445
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	100.0
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	100.0
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	100.0
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	100.0
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	100.0
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.96
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.96
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.95
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.95
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.94
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.94
PRK07233	434	hypothetical protein; Provisional	99.94
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.93
PLN02576	496	protoporphyrinogen oxidase	99.93
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.93
PRK07208	479	hypothetical protein; Provisional	99.9
PLN02612	567	phytoene desaturase	99.88
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.88
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.87
PLN02487	569	zeta-carotene desaturase	99.86
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.78
PLN02268	435	probable polyamine oxidase	99.77
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	99.76
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.76
PLN02568	539	polyamine oxidase	99.73
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.7
PLN02529	738	lysine-specific histone demethylase 1	99.69
PLN02676	487	polyamine oxidase	99.69
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.69
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.67
PLN03000	881	amine oxidase	99.64
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.64
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.62
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.55
COG3349	485	Uncharacterized conserved protein [Function unknow	99.55
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.5
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.46
PLN02976	1713	amine oxidase	99.42
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.42
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	99.29
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.25
COG2081	408	Predicted flavoproteins [General function predicti	99.2
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.19
COG0579	429	Predicted dehydrogenase [General function predicti	99.18
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.13
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.07
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.06
PRK08274	466	tricarballylate dehydrogenase; Validated	99.05
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.04
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.0
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.0
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.98
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.96
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.93
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.92
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.9
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.88
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.86
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.86
PRK05257	494	malate:quinone oxidoreductase; Validated	98.86
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.85
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.84
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.83
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.8
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.8
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.8
PRK06847	375	hypothetical protein; Provisional	98.79
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.77
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.75
PRK07190	487	hypothetical protein; Provisional	98.72
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.68
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.67
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.63
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.6
PRK10157	428	putative oxidoreductase FixC; Provisional	98.58
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.58
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.57
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.56
PRK10015	429	oxidoreductase; Provisional	98.54
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.52
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.51
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.51
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.49
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.48
PRK06116	450	glutathione reductase; Validated	98.48
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.45
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.45
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.44
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.44
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.42
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.41
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.41
PRK06370	463	mercuric reductase; Validated	98.4
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.4
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.37
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.37
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.36
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.36
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.35
PLN02985	514	squalene monooxygenase	98.35
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.34
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.34
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.33
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.33
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.32
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.32
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.32
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.31
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.31
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.31
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.3
PRK08163	396	salicylate hydroxylase; Provisional	98.3
PRK07121	492	hypothetical protein; Validated	98.3
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.3
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.3
PRK09126	392	hypothetical protein; Provisional	98.29
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.28
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.28
PRK08013	400	oxidoreductase; Provisional	98.28
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.28
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.27
PRK07045	388	putative monooxygenase; Reviewed	98.26
PRK13748	561	putative mercuric reductase; Provisional	98.25
PTZ00052	499	thioredoxin reductase; Provisional	98.25
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.25
PRK06185	407	hypothetical protein; Provisional	98.24
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.24
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.24
PLN02661	357	Putative thiazole synthesis	98.23
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.23
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.23
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.22
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.22
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.22
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.21
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.2
PRK14694	468	putative mercuric reductase; Provisional	98.2
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.19
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.19
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.19
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.19
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.18
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.18
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.17
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.17
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.16
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.16
TIGR02053	463	MerA mercuric reductase. This model represents the	98.16
PTZ00058	561	glutathione reductase; Provisional	98.16
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.16
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.16
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.15
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.15
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.15
PRK06184	502	hypothetical protein; Provisional	98.14
PRK06175	433	L-aspartate oxidase; Provisional	98.14
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.13
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.12
PRK12831	464	putative oxidoreductase; Provisional	98.12
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.12
PRK14727	479	putative mercuric reductase; Provisional	98.1
PRK07236	386	hypothetical protein; Provisional	98.1
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.09
PRK12839	572	hypothetical protein; Provisional	98.09
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.08
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.06
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.06
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.05
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.05
PLN02507	499	glutathione reductase	98.05
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.05
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.05
PRK06753	373	hypothetical protein; Provisional	98.04
PLN02463	447	lycopene beta cyclase	98.03
PRK07804	541	L-aspartate oxidase; Provisional	98.03
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.03
PRK08244	493	hypothetical protein; Provisional	98.03
PRK06126	545	hypothetical protein; Provisional	98.02
PRK02106	560	choline dehydrogenase; Validated	98.02
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.01
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.01
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.0
PRK11445	351	putative oxidoreductase; Provisional	98.0
PRK06834	488	hypothetical protein; Provisional	98.0
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.99
PTZ00367	567	squalene epoxidase; Provisional	97.99
COG3573	552	Predicted oxidoreductase [General function predict	97.99
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.99
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.98
PRK08294	634	phenol 2-monooxygenase; Provisional	97.98
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.98
PRK06475	400	salicylate hydroxylase; Provisional	97.98
PRK07538	413	hypothetical protein; Provisional	97.98
PLN02697	529	lycopene epsilon cyclase	97.98
PLN02546	558	glutathione reductase	97.97
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.97
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.97
PRK10262	321	thioredoxin reductase; Provisional	97.95
PRK07588	391	hypothetical protein; Provisional	97.95
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.94
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.94
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.94
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.94
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.94
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.93
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.93
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.93
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.93
PRK07395	553	L-aspartate oxidase; Provisional	97.93
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.93
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.92
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.92
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.91
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.9
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.9
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.9
PRK05868	372	hypothetical protein; Validated	97.89
PLN02852	491	ferredoxin-NADP+ reductase	97.89
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.88
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.88
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.88
PLN02815	594	L-aspartate oxidase	97.87
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.86
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.86
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.86
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	97.86
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.85
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.85
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.85
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.84
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.84
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.84
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.83
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.81
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.8
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.79
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.78
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.77
PRK06996	398	hypothetical protein; Provisional	97.76
PRK08071	510	L-aspartate oxidase; Provisional	97.76
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.75
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.75
PTZ00188	506	adrenodoxin reductase; Provisional	97.75
PRK08275	554	putative oxidoreductase; Provisional	97.74
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.74
PRK09077	536	L-aspartate oxidase; Provisional	97.73
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.72
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.72
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.7
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.69
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.69
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.68
PRK08401	466	L-aspartate oxidase; Provisional	97.66
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.65
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.64
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.61
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.61
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	97.61
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.55
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.54
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.54
PRK13984	604	putative oxidoreductase; Provisional	97.53
PRK07846	451	mycothione reductase; Reviewed	97.52
PRK07512	513	L-aspartate oxidase; Provisional	97.51
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.51
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.49
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.48
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.48
PLN02785	587	Protein HOTHEAD	97.45
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.45
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.43
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.41
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.4
COG4716	587	Myosin-crossreactive antigen [Function unknown]	97.36
KOG2853	509	consensus Possible oxidoreductase [General functio	97.3
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.21
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.21
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.1
PRK09897	534	hypothetical protein; Provisional	96.96
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.84
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.82
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	96.73
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.71
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.58
KOG2960	328	consensus Protein involved in thiamine biosynthesi	96.52
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.52
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.47
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	96.47
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.41
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.26
KOG2852	380	consensus Possible oxidoreductase [General functio	96.19
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	96.15
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.99
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.99
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	95.99
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.84
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	95.82
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	95.7
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	95.66
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	95.65
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.33
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.31
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	95.27
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.21
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.18
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.17
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	95.1
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.03
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.02
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	95.02
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	94.96
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.94
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.9
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.9
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	94.81
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.74
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	94.64
PRK14989	847	nitrite reductase subunit NirD; Provisional	94.64
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.63
TIGR02053	463	MerA mercuric reductase. This model represents the	94.6
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.58
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.58
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	94.58
PRK06370	463	mercuric reductase; Validated	94.55
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	94.49
PRK13512	438	coenzyme A disulfide reductase; Provisional	94.45
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	94.43
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	94.4
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	94.38
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	94.36
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	94.35
PRK07846	451	mycothione reductase; Reviewed	94.35
PRK04148	134	hypothetical protein; Provisional	94.32
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	94.28
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	94.27
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.25
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	94.13
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	94.11
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	94.01
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.01
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	93.93
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	93.89
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	93.89
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	93.85
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	93.81
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	93.81
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	93.79
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	93.74
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.66
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.63
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	93.57
PRK07845	466	flavoprotein disulfide reductase; Reviewed	93.52
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	93.51
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.47
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	93.42
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	93.41
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.38
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.37
PRK09564	444	coenzyme A disulfide reductase; Reviewed	93.35
PTZ00153	659	lipoamide dehydrogenase; Provisional	93.3
PTZ00058	561	glutathione reductase; Provisional	93.27
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.27
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	93.24
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	93.23
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.15
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.08
PLN02507	499	glutathione reductase	93.03
PRK10262	321	thioredoxin reductase; Provisional	93.02
PRK14989	847	nitrite reductase subunit NirD; Provisional	92.93
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	92.92
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	92.89
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	92.79
PRK06116	450	glutathione reductase; Validated	92.75
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.7
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	92.68
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	92.61
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	92.52
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	92.45
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	92.4
PLN02546	558	glutathione reductase	92.33
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	92.32
PRK13748	561	putative mercuric reductase; Provisional	92.26
PRK07417	279	arogenate dehydrogenase; Reviewed	92.23
PRK10157	428	putative oxidoreductase FixC; Provisional	92.2
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	92.16
PRK14694	468	putative mercuric reductase; Provisional	92.13
PRK12770	352	putative glutamate synthase subunit beta; Provisio	91.97
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	91.95
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.71
PRK12831	464	putative oxidoreductase; Provisional	91.7
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	91.62
PRK14727	479	putative mercuric reductase; Provisional	91.62
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	91.54
PLN02464	627	glycerol-3-phosphate dehydrogenase	91.5
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	91.47
PRK07121	492	hypothetical protein; Validated	91.43
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	91.42
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	91.37
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.37
PTZ00052	499	thioredoxin reductase; Provisional	91.32
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	91.29
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	91.28
PRK10015	429	oxidoreductase; Provisional	91.28
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.17
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	91.16
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	91.09
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	91.08
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	91.07
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	91.07
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	90.99
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	90.99
PTZ00082	321	L-lactate dehydrogenase; Provisional	90.96
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.94
PLN02353	473	probable UDP-glucose 6-dehydrogenase	90.9
PRK11730	715	fadB multifunctional fatty acid oxidation complex	90.84
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	90.75
PRK15116	268	sulfur acceptor protein CsdL; Provisional	90.69
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	90.69
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	90.66
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	90.31
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	90.3
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	90.21
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	90.15
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	90.03
PRK06719	157	precorrin-2 dehydrogenase; Validated	89.98
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	89.97
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	89.97
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	89.92
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	89.87
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	89.84
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	89.68
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	89.62
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.58
PRK06223	307	malate dehydrogenase; Reviewed	89.57
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	89.55
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	89.51
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.49
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	89.35
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	89.07
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	88.96
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.96
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.91
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.61
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	88.58
PRK06849	389	hypothetical protein; Provisional	88.57
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	88.55
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	88.48
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	88.44
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	88.37
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	88.35
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	88.3
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	88.28
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	88.26
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	88.25
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	88.16
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	88.16
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	88.1
PRK08306	296	dipicolinate synthase subunit A; Reviewed	88.07
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	88.01
PRK12839	572	hypothetical protein; Provisional	87.98
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.97
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	87.84
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.63
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	87.61
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	87.59
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	87.58
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	87.57
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	87.54
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	87.52
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	87.32
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	87.28
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	87.2
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	87.2
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.15
PLN02695	370	GDP-D-mannose-3',5'-epimerase	87.05
PRK08401	466	L-aspartate oxidase; Provisional	87.04
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	86.9
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	86.78
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	86.72
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	86.68
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	86.65
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	86.61
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	86.61
PRK09496	453	trkA potassium transporter peripheral membrane com	86.51
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	86.51
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	86.45
PTZ00117	319	malate dehydrogenase; Provisional	86.28
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	86.26
PRK06175	433	L-aspartate oxidase; Provisional	86.24
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	85.95
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	85.92
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	85.89
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	85.88
PRK08275	554	putative oxidoreductase; Provisional	85.81
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	85.78
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	85.76
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	85.66
PRK12842	574	putative succinate dehydrogenase; Reviewed	85.64
PRK12548	289	shikimate 5-dehydrogenase; Provisional	85.59
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	85.57

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=100.00  E-value=2.6e-104  Score=790.33  Aligned_cols=436  Identities=59%  Similarity=1.011  Sum_probs=373.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCC-CCCCCccCCCCCeEEecccce
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGD-DKPPERLGSSKEYNVDMIPKF   79 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~iDlgp~~   79 (445)
                      |+++|||||+|||+.++++|++||++|++|+|+|+|+||||.++|++++++++||... ..+++.++.+|+|+|||.|++
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl   80 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL   80 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence            9999999999999999999999999999999999999999999999999999999877 344567889999999999999


Q ss_pred             eecCchhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccccc
Q 036458           80 MMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEG  159 (445)
Q Consensus        80 l~~~~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~  159 (445)
                      ++++|+|+++|+++++.+|+||+.++++|+|.+|++++||+++.|+|+++++++++||++|||++++.+|++..+.++++
T Consensus        81 l~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~  160 (438)
T PF00996_consen   81 LYARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTHKG  160 (438)
T ss_dssp             EETTSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTT
T ss_pred             hhccCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998777777787


Q ss_pred             ccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHHHHH
Q 036458          160 LDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA  239 (445)
Q Consensus       160 ~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q~l~  239 (445)
                      ++...++|.+++++|+|+++++++++|+++|+..+.+.+.|+.++++|+++|+.|+++| |++||+||+||+|||+|+||
T Consensus       161 ~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~Slgry-G~sPfLyP~YG~GELpQ~Fc  239 (438)
T PF00996_consen  161 LDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRY-GKSPFLYPLYGLGELPQAFC  239 (438)
T ss_dssp             G-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCC-SSSSEEEETT-TTHHHHHHH
T ss_pred             cccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhcc-CCCCEEEEccCCccHHHHHH
Confidence            77788999999999999999999999999999988888889999999999999999999 99999999999999999999


Q ss_pred             HHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCccccccceEEEEEEeeccCCCCCCCCCceE
Q 036458          240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMNHPIPDTNDSHSCQ  319 (445)
Q Consensus       240 r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~~~~~~~~~~r~i~i~~~~i~~~~~~~~~~  319 (445)
                      |+||++||+|+||++|++|..+++|++.+|.++|++++|++||++|+|+|+++++.++++|+|||+++||+++++..+++
T Consensus       240 Rl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~~v~~~~~V~RaI~Il~~pi~~t~~~~s~~  319 (438)
T PF00996_consen  240 RLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPEKVKKTGQVSRAICILDHPIPNTEDASSVQ  319 (438)
T ss_dssp             HHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGCGEEEEEEEEEEEEEESS-STTSTT-SSEE
T ss_pred             HHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCcccccccceEEEEEEEEcCCCCCCCCCceEE
Confidence            99999999999999999999877899999999999999999999999999877777899999999999999988778899


Q ss_pred             EEeCCCcCCCCCCEEEEEecCCccccCCCcEEEEEEeeeCCCCcccccHhHHhhcCCcccceeeeeeccccCCCCCCCcE
Q 036458          320 VILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHC  399 (445)
Q Consensus       320 i~~p~~~~~~~~~i~v~~~s~~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  399 (445)
                      |++|+.+.+++++|||+++|+++++||+|+|++|+||.+++++|+++|++++++|+||.++|+.+++.|+|++++..+||
T Consensus       320 IiiP~~~~~~~~dIyv~~~ss~~~~CP~G~yi~~~St~~~t~~p~~eL~~~l~lL~~i~e~f~~v~~~~~p~~~~~~~~i  399 (438)
T PF00996_consen  320 IIIPQSQVGRKSDIYVLQLSSSTGVCPKGQYIAYVSTTVETSNPEEELEPALELLGPIEEKFVSVSDLYEPTDDGTDDNI  399 (438)
T ss_dssp             EEE-GGGCTSSS-EEEEEEEGGGTSS-TT-EEEEEEEEE-SS-HHHHTHHHHHTT-SESEEEEEEEEEEEESSSSTTTSE
T ss_pred             EecCCcccCCCCCeEEEEECCCccccCCCcEEEEEEeccCCCCcHHHHHHHHHhhccHHHHhcchhhcccccCCCccCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999989999


Q ss_pred             EEccCCCCCCccHhHHHHHHHHHHHhcCCCcccccCch
Q 036458          400 FISTSYDATTHFESTVQDVLEMYTKITGKAVDLSVDLS  437 (445)
Q Consensus       400 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (445)
                      |||+|||+++|||++++||+++|+||+|+++||++++.
T Consensus       400 ~is~~~dat~hfe~~~~dv~~~~~~~~g~~~~~~~~~~  437 (438)
T PF00996_consen  400 FISKSYDATSHFETTCEDVLDIYKRITGKDLDLSKRKH  437 (438)
T ss_dssp             EE-----S-SBSHHHHHHHHHHHHHHHSS---------
T ss_pred             EEcCCCCcccchHHHHHHHHHHHHHhhCCccccccCCC
Confidence            99999999999999999999999999999999998764

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-96  Score=699.65  Aligned_cols=436  Identities=66%  Similarity=1.109  Sum_probs=423.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCC-CCCCCccCCCCCeEEecccce
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGD-DKPPERLGSSKEYNVDMIPKF   79 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~iDlgp~~   79 (445)
                      |+++|||||+|||+.+|+++++||++|++|+|+|||++|||..+|+++.++++||+.. ..+|+.++.+|+|++|+.|++
T Consensus         1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~   80 (440)
T KOG1439|consen    1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKF   80 (440)
T ss_pred             CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHh
Confidence            8999999999999999999999999999999999999999999999999999999965 778999999999999999999


Q ss_pred             eecCchhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccccc
Q 036458           80 MMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEG  159 (445)
Q Consensus        80 l~~~~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~  159 (445)
                      ++++++++++|+++++++||+|+.++++|+|.+|++++||.++.++|.+++|++++||++|||+.++.+|.+.++.+|++
T Consensus        81 lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e~~~~~~~~  160 (440)
T KOG1439|consen   81 LMANGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYDEEDPKTWQG  160 (440)
T ss_pred             hhccchHHHHHHHhchhhheEEEeecceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhhhhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHHHHH
Q 036458          160 LDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA  239 (445)
Q Consensus       160 ~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q~l~  239 (445)
                      +++.+.+|+++++++++..+.++|++|++++..+++|++.|+.++++||++|.+|+++| |.+||+||+||+|||+|+||
T Consensus       161 ~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~y-g~~~ylyP~yGlgEL~QgFa  239 (440)
T KOG1439|consen  161 YDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILLYVRSFARY-GKSPYLYPLYGLGELPQGFA  239 (440)
T ss_pred             cccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhc-CCCcceecccCcchhhHHHH
Confidence            88877899999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCccccccceEEEEEEeeccCCCCCCCCCceE
Q 036458          240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMNHPIPDTNDSHSCQ  319 (445)
Q Consensus       240 r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~~~~~~~~~~r~i~i~~~~i~~~~~~~~~~  319 (445)
                      |.++.+||+||||+++.+|..+++|++.++..++++..|+.+|++|+|+|+++++.+++.|++||++||++++++.+++|
T Consensus       240 RlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~dpSY~~~~~k~vg~viR~iCIl~hpi~~t~~~~S~q  319 (440)
T KOG1439|consen  240 RLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVICDPSYFPQKVKKVGQVIRAICILSHPIPNTNDAESAQ  319 (440)
T ss_pred             HHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEecCccchHHHHhhhheeeeeEEecCCcCcCCccceee
Confidence            99999999999999999999866899999999999999999999999999998888999999999999999999999999


Q ss_pred             EEeCCCcCCCCCCEEEEEecCCccccCCCcEEEEEEeeeCCCCcccccHhHHhhcCCcccceeeeeeccccCCCCCCCcE
Q 036458          320 VILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHC  399 (445)
Q Consensus       320 i~~p~~~~~~~~~i~v~~~s~~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  399 (445)
                      ++||+.+++++++||++..|+++++||+|+|++|++|.+++.+||.++++++++|+||.+.|+.+++.|+|.+.+..+|+
T Consensus       320 iiipq~q~~rksdi~v~~~ss~~~vcpeG~yia~vsT~~Et~~pE~ei~~~lellg~~~e~Fv~i~d~y~p~~~~~~~~~  399 (440)
T KOG1439|consen  320 IIIPQFQVGRKSDIYVFGLSSAHNVCPEGKYIAYVSTTVETPNPEVEILPGLELLGPIDEKFVGISDLYEPVDDGTESNI  399 (440)
T ss_pred             EEechhhhCCcccEEEEEeccCCCcCCCceEEEEEEeccCCCChHHhhhhHHHhhCchhhhhccccceEEecccCccceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888999


Q ss_pred             EEccCCCCCCccHhHHHHHHHHHHHhcCCCcccccCch
Q 036458          400 FISTSYDATTHFESTVQDVLEMYTKITGKAVDLSVDLS  437 (445)
Q Consensus       400 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (445)
                      |++.+||+|+|||+++.+++++|+|++|+++||+....
T Consensus       400 f~s~syDaT~HFet~~~dv~~i~~~~~~~~~~~~~~~~  437 (440)
T KOG1439|consen  400 FISTSYDATTHFETTVYDVLDIYKRLTGKELDLSEDDE  437 (440)
T ss_pred             EEEcccCCCCchHHHHHHHHHHHHhhcccccccccccc
Confidence            99999999999999999999999999999999987665

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=100.00  E-value=9.6e-95  Score=731.44  Aligned_cols=440  Identities=63%  Similarity=1.099  Sum_probs=416.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEeccccee
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFM   80 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l   80 (445)
                      |+++|||||||||++||++|++||++|++|+|+|+|++|||+++|+++++++++|.++..+|+.++.+|.|++|+.|+++
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l   80 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFI   80 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeee
Confidence            89999999999999999999999999999999999999999999999999999999888889999999999999999999


Q ss_pred             ecCchhHHHhhhccccCceeeEEecceEEE-eCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccccc
Q 036458           81 MANGGLVRILIHTDVTKYLNFKAVDGSFVY-NKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEG  159 (445)
Q Consensus        81 ~~~~~l~~~l~~~g~~~~l~~~~~~~~~~~-~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~  159 (445)
                      +++|.++++|.++++.+|++|+.+++.|+| .+|+++++|+++.++|+++++++++|+++|||++++.++.+.++.+++.
T Consensus        81 ~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~  160 (443)
T PTZ00363         81 MASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKG  160 (443)
T ss_pred             ecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhcc
Confidence            999999999999999999999999999998 8899999999999999999999999999999999999988766666776


Q ss_pred             ccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHHHHH
Q 036458          160 LDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA  239 (445)
Q Consensus       160 ~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q~l~  239 (445)
                      .+++.+|+.+|++++++++++++++.+++++...+.|.+.|+.+++.++++|+.|+++| |.+|++||+||+++|+|+|+
T Consensus       161 ~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~-g~~p~~yp~gG~g~L~qal~  239 (443)
T PTZ00363        161 LNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRY-GKSPFIYPLYGLGGLPQAFS  239 (443)
T ss_pred             cCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhc-cCCcceeeCCCHHHHHHHHH
Confidence            66667999999999999999999999999998766677779999999999999999999 89999999999999999999


Q ss_pred             HHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCCCccccccceEEEEEEeeccCCCCCCCCCce
Q 036458          240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMNHPIPDTNDSHSC  318 (445)
Q Consensus       240 r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~p~~~~~~~~~~r~i~i~~~~i~~~~~~~~~  318 (445)
                      |.++++||+|+|+++|++|..++++++++|++ +|++++|+.||++++|+|.++++.++++|+|||+++|++++.+..++
T Consensus       240 r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~~~~~~~v~R~i~i~~~pi~~~~~~~~~  319 (443)
T PTZ00363        240 RLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDKVKKVGKVIRCICILNHPIPNTNNANSC  319 (443)
T ss_pred             HHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccccccccEEEEEEEEEcccccccCcCccE
Confidence            99999999999999999999865677888875 88899999999999999988777889999999999999998877889


Q ss_pred             EEEeCCCcCCCCCCEEEEEecCCccccCCCcEEEEEEeeeCCCCcccccHhHHhhcCCcccceeeeeeccccCCCCCCCc
Q 036458          319 QVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADH  398 (445)
Q Consensus       319 ~i~~p~~~~~~~~~i~v~~~s~~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  398 (445)
                      +|+||+.+++++++||++++|+++++||+|+|++|+||.+++++|+++|++++++|+++.++|+++++.|+|++++.++|
T Consensus       320 ~i~~P~~~~~~~~~i~v~~~s~~~~~cp~g~~i~~~st~~~t~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  399 (443)
T PTZ00363        320 QIIIPQKQLGRKNDIYIMLVSSNHGVCPKGKYIAIISTTVETNNPEKEIEPALKLLGPIEEKFVSISDLYEPTEDGKKDN  399 (443)
T ss_pred             EEEECCcccCCCCCEEEEEecCCCCcCCCCcEEEEEEEecCCCCHHHHHHHHHHHhccchheEEeccccccccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             EEEccCCCCCCccHhHHHHHHHHHHHhcCCCcccccCchhhhh
Q 036458          399 CFISTSYDATTHFESTVQDVLEMYTKITGKAVDLSVDLSAASA  441 (445)
Q Consensus       399 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (445)
                      ||+|++||+++|||+++++|++||++|+|+++||++.++.+++
T Consensus       400 ~~~~~~~d~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (443)
T PTZ00363        400 IFISKSYDATSHFESATEDVLDLYKRITGKDLDLTNIPETADE  442 (443)
T ss_pred             EEEeCCCCccccHHHHHHHHHHHHHHhhCCcceecCCCccccC
Confidence            9999999999999999999999999999999999988876654

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-79  Score=572.77  Aligned_cols=427  Identities=44%  Similarity=0.756  Sum_probs=397.5

Q ss_pred             CCCc--ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccc
Q 036458            1 MDED--YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPK   78 (445)
Q Consensus         1 m~~~--~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~   78 (445)
                      |++.  |||||+||||.+|+.+++||.+|++|+|+|+|++||+..+|++..++.+||+.+...|...+..++|++|+.|+
T Consensus         1 Md~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK   80 (434)
T COG5044           1 MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPK   80 (434)
T ss_pred             CCccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchh
Confidence            6765  99999999999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             eeecCchhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCccccc
Q 036458           79 FMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHE  158 (445)
Q Consensus        79 ~l~~~~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~  158 (445)
                      +++++++++++|+++++.+||+|+++.++|+|.+|+++++|.++.++|.++++++++||++|||++|+.+|.+ .+.+++
T Consensus        81 ~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~-~~~~~~  159 (434)
T COG5044          81 FLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAE-QKSTLQ  159 (434)
T ss_pred             hhcccchHHHHHHHhChHhheeeeeccccEEecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHh-hhhhch
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987 566677


Q ss_pred             cccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHHHH
Q 036458          159 GLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAF  238 (445)
Q Consensus       159 ~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q~l  238 (445)
                      .+...+.++...+++|+++.....+++|+++++.+   ++.|+.++++||.+|++|++.| |.+||+||+||++||+|.|
T Consensus       160 ~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~ld---l~~p~re~~erIl~Y~~Sf~~y-g~~pyLyp~YGl~El~QGF  235 (434)
T COG5044         160 ELYESKDTMEFLFEKFGLSGATEEFIGHGIALSLD---LDIPAREALERILRYMRSFGDY-GKSPYLYPRYGLGELSQGF  235 (434)
T ss_pred             hhhhcccHHHHHHHHHccCcchhhhhhhhhhhhcc---ccCCchHHHHHHHHHHHhhccc-CCCcceeeccCchhhhHHH
Confidence            66555566777889999999999999999999875   5679999999999999999999 9999999999999999999


Q ss_pred             HHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCccccccc---eEEEEEEeec-cCCCCCCC
Q 036458          239 ARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVG---KVARAICIMN-HPIPDTND  314 (445)
Q Consensus       239 ~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~~~~~~~---~~~r~i~i~~-~~i~~~~~  314 (445)
                      ||.++..||+|+||+++.+|... + .+.+|..++.+.+|..||+.++++|.+.+..+   ++.|++||++ +|.+++..
T Consensus       236 aRssav~GgtymLn~~i~ein~t-k-~v~~v~~~~~~~ka~KiI~~~~~~~~~~~~~~q~yriiRa~Ci~~~h~~~~~~~  313 (434)
T COG5044         236 ARSSAVYGGTYMLNQAIDEINET-K-DVETVDKGSLTQKAGKIISSPTYFREDSKSVGQFYRIIRAICILLVHPVPFTTG  313 (434)
T ss_pred             HHhhhccCceeecCcchhhhccc-c-ceeeeecCcceeecCcccCCcccccccccccchhhhhhHhhhhhhcCccccccc
Confidence            99999999999999999999763 3 24566778889999999999999988776655   7999999988 99988877


Q ss_pred             CCceEEEeCCCcCCCCCCEEEEEecCCccccCCCcEEEEEEeeeCCCCcccccHhHHhhcCCcccceeeeeeccccCCCC
Q 036458          315 SHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNH  394 (445)
Q Consensus       315 ~~~~~i~~p~~~~~~~~~i~v~~~s~~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  394 (445)
                      .++.+++||+.++.++++||+...|+++++||+|+|+.|++|..++.+||.++.+++++|+++.+.|+.+...|+|..+ 
T Consensus       314 ~ds~~iif~~~~lk~~~~i~v~~lgs~~~~CPEGy~l~yisT~~et~~~e~ei~~~lell~~~~e~~~~~e~iyq~~ed-  392 (434)
T COG5044         314 LDSLQIIFPPFSLKRKNDIQVAGLGSGSEVCPEGYYLAYISTIDETPTPEDEILAALELLGPSVEKFVDVEEIYQPDED-  392 (434)
T ss_pred             cccceeeechhhhcccCceEEEEecCCCCCCCCceEEEEEEeccCCCChHHHHHHHHHhhcchhhccccceeeeecccc-
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999999876 


Q ss_pred             CCCcEEEccCCCCCCccHhHHHHHHHHHHHhcCCCcccccCc
Q 036458          395 EADHCFISTSYDATTHFESTVQDVLEMYTKITGKAVDLSVDL  436 (445)
Q Consensus       395 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (445)
                       .+|++++.|+|++.|||+...+++.+|++++|.++.|..++
T Consensus       393 -~~~~~~~~s~De~~~~e~l~~~i~~~y~~~t~~~~vfd~~~  433 (434)
T COG5044         393 -TNQVYLSDSVDESSHFESLTYEIKGIYKRFTGTPLVFDQRQ  433 (434)
T ss_pred             -cceeEEeccccccccHHHHHHHHHHHHHhhcCCccccccCC
Confidence             48999999999999999999999999999999999997654

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-64  Score=477.04  Aligned_cols=429  Identities=28%  Similarity=0.515  Sum_probs=335.9

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchh--------hhhhhh--cC----------C-C--
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLT--------QLWKRF--KG----------D-D--   59 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~--------~~~~~~--~~----------~-~--   59 (445)
                      ++|||||||||+.+.++|++.||+|.+|+|+|+|+||||.|+||+..        .+.+.-  ..          + .  
T Consensus         7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~~~   86 (547)
T KOG4405|consen    7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNAPP   86 (547)
T ss_pred             hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCCCC
Confidence            57999999999999999999999999999999999999999999987        332221  00          0 0  


Q ss_pred             CC----------------C-----------C-----ccCCCCCeEEecccceeecCchhHHHhhhccccCceeeEEecce
Q 036458           60 KP----------------P-----------E-----RLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGS  107 (445)
Q Consensus        60 ~~----------------~-----------~-----~~~~~~~~~iDlgp~~l~~~~~l~~~l~~~g~~~~l~~~~~~~~  107 (445)
                      .+                |           .     ....+|.|++||.|+++++.|.++++|+++++.+|.||+.+++.
T Consensus        87 t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLvpkilys~g~lI~lLikS~vsrYaEFK~V~r~  166 (547)
T KOG4405|consen   87 TPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLVPKILYSAGELIQLLIKSNVSRYAEFKNVDRI  166 (547)
T ss_pred             CCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhhhHHHhcccHHHHHHHHhcchhhhhhhccchh
Confidence            00                1           0     13467999999999999999999999999999999999999999


Q ss_pred             EEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhh-ccCccccccccCCCCCHHHHHHHcCCChhHHHHHHH
Q 036458          108 FVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYE-EDDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGH  186 (445)
Q Consensus       108 ~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~i~~  186 (445)
                      +.+..|++..||++|.++|.++.+++.|||.+|||+.++.+|. +.++..+..  ..+.||.||+++.++++.++.++.|
T Consensus       167 l~~~eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk~~~~~~~--~~e~~F~EyL~~~rltp~lqs~vl~  244 (547)
T KOG4405|consen  167 LAFREGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEKDPDEYVE--FRERPFSEYLKTMRLTPKLQSIVLH  244 (547)
T ss_pred             hcccCCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhccCcHHHHH--hhcCcHHHHHHhcCCChhhHHHHHH
Confidence            9999999999999999999999999999999999999999984 233433333  3568999999999999999999999


Q ss_pred             HhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCC-c
Q 036458          187 ALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDG-K  265 (445)
Q Consensus       187 ~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g-~  265 (445)
                      +++|...+   ...+.+++.+.++|+.|+|+| |++||+||.||.|||||+|||.||++||.|+|+.+|+.|..|.+. +
T Consensus       245 aIaM~~~~---~~tt~eGm~at~~fl~slGrf-gntpfLfPlYGqGELpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~  320 (547)
T KOG4405|consen  245 AIAMLSES---QLTTIEGMDATKNFLTSLGRF-GNTPFLFPLYGQGELPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLD  320 (547)
T ss_pred             HHHhcCcc---cccHHHHHHHHHHHHHHhhcc-CCCcceeeccCCCcchHHHHHHHHHhcceEEeccchhheeecccccc
Confidence            99997643   246789999999999999999 999999999999999999999999999999999999999986322 2


Q ss_pred             EE-EEEeCCeEEEcCEEEECCCCCCcccc---ccceEEEEEEeeccCCCCCCCCCceEE-EeCCCcCCCCCCEEEEEecC
Q 036458          266 VI-GVTSEGETAKCKKVVCDPSYLPDKVQ---KVGKVARAICIMNHPIPDTNDSHSCQV-ILPQKQLGRKSDMYLFCCSY  340 (445)
Q Consensus       266 ~~-~v~~~g~~~~ad~VI~~~~~~p~~~~---~~~~~~r~i~i~~~~i~~~~~~~~~~i-~~p~~~~~~~~~i~v~~~s~  340 (445)
                      +. ++...|+++.|+++|++++|+|+.+.   ..++++|+++|++.++..+......++ .+|....+ .-.+.+...++
T Consensus       321 ~~~~l~s~g~ri~~k~~v~s~~y~pe~~~~~~~~K~Israv~itd~sil~~e~~q~~~ll~~~~~epg-~~avr~iel~~  399 (547)
T KOG4405|consen  321 CKAILDSFGQRINAKNFVVSPSYAPEVVCSRVQLKQISRAVLITDPSILKTELDQQLSLLSLLAVEPG-AMAVRLIELCS  399 (547)
T ss_pred             hhhhHhhhcchhcceeeeecCcccccccccccchhhcceeEEecCccccchhHHhhhhhhhccccCcc-hhhHHHHHhhc
Confidence            22 34468999999999999999986542   235899999999999876542222232 24444322 22343445677


Q ss_pred             CccccCCCcEEEEEEeeeCCCCcccccHhHHh-hcCC-----------cccceeeeeeccccCCCCCCCcEEEccCCCCC
Q 036458          341 AHNVAPNGQYIAFVSTEAETDNPEVELKPGID-LLGP-----------VDEIFFDTYDRFVPTNNHEADHCFISTSYDAT  408 (445)
Q Consensus       341 ~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~-~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  408 (445)
                      +++.||+|.|++|++... +....+.++..+. ++..           +|..+++..+.-.-.....+.|||+++++|..
T Consensus       400 ~t~tc~kg~yLvhlT~~~-s~~~~ed~~S~~~kif~t~~~~E~~kp~llw~~yf~~~~~s~~s~s~~~~nvyv~~~pD~n  478 (547)
T KOG4405|consen  400 STMTCPKGTYLVHLTCLS-SKTAREDLESDVVKIFTTEIKNETSKPRLLWALYFTMRDSSVISRSPLAENVYVCPPPDCN  478 (547)
T ss_pred             ccccCccceEEEEeeccc-CcccccchhhhHHHHhhhhhccccccceehHHHHhhHHhhcccccCCCCCceEECCCCCCC
Confidence            889999999999998643 2334444554444 3321           12222222221111111247999999999999


Q ss_pred             CccHhHHHHHHHHHHHhcCCCcccccCchhh
Q 036458          409 THFESTVQDVLEMYTKITGKAVDLSVDLSAA  439 (445)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (445)
                      +|++.+|++++++|++|+|.+-.|...++.+
T Consensus       479 L~y~~aVe~a~~Lf~k~~p~edf~p~~p~pe  509 (547)
T KOG4405|consen  479 LGYDEAVEQARTLFQKIFPSEDFLPRAPNPE  509 (547)
T ss_pred             cChHHHHHHHHHHHHHhCChhhhCCCCCCHH
Confidence            9999999999999999999887776555433

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.96  E-value=9.7e-28  Score=250.35  Aligned_cols=319  Identities=16%  Similarity=0.229  Sum_probs=208.8

Q ss_pred             EEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecCchh
Q 036458            7 VIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMANGGL   86 (445)
Q Consensus         7 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~~~l   86 (445)
                      |||||||++||+||++|+++|++|+||||++++||+++|++.                    .+|.||.|++++..++.+
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~--------------------~G~~fD~G~~~~~~~~~~   60 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLED--------------------DGFRFDTGPTVITMPEAL   60 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEec--------------------CCeEEecCCeEEccccHH
Confidence            699999999999999999999999999999999999999998                    569999999999866555


Q ss_pred             HHHhhhccc--cCceeeEEecceE--EEeCCeEEEccCChHHHhhccccCch--hHHHHHHHHHHHHhhhc--------c
Q 036458           87 VRILIHTDV--TKYLNFKAVDGSF--VYNKGKIYKVPATDVEALKSPLMGLF--EKRRARKFFIYVQEYEE--------D  152 (445)
Q Consensus        87 ~~~l~~~g~--~~~l~~~~~~~~~--~~~~g~~~~vp~~~~~~~~~~l~~~~--~k~~~~~f~~~~~~~~~--------~  152 (445)
                      .+++.++|+  .+++++...++.|  .+.+|+.+.+|.+ .+.+...+..++  +...+.+|+..+.....        .
T Consensus        61 ~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (502)
T TIGR02734        61 EELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDND-QEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYV  139 (502)
T ss_pred             HHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCC-HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            566666764  5678888877665  3456777888877 555555444432  34455666554443211        0


Q ss_pred             Ccccc----c------cccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCC
Q 036458          153 DPKSH----E------GLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGS  222 (445)
Q Consensus       153 ~~~~~----~------~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s  222 (445)
                      .....    .      .......|+.++++++..++.++.++.........+ ..+.++...+-   .+    ..+  ..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g~~-p~~~~~~~~l~---~~----~~~--~~  209 (502)
T TIGR02734       140 PFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLGGN-PFRTPSIYALI---SA----LER--EW  209 (502)
T ss_pred             CCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeeccC-cccchHHHHHH---HH----HHh--hc
Confidence            00000    0      001134788888887766777776653211121111 11223222211   11    112  12


Q ss_pred             ceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCC-------Cccc--
Q 036458          223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYL-------PDKV--  292 (445)
Q Consensus       223 ~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~-------p~~~--  292 (445)
                      ..+||.+|++.++++|.+.++..|++|+++++|++|..+ ++++++|++ +|+++.||.||++.+..       +...  
T Consensus       210 g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~  288 (502)
T TIGR02734       210 GVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRR  288 (502)
T ss_pred             eEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccc
Confidence            346899999999999999999999999999999999984 677778875 67889999999987642       1111  


Q ss_pred             ----cccc--eEEEEE----Eeec---cCCCCCCCCCceEEEeCC------------CcCCCCCCEEEEEec-CCccccC
Q 036458          293 ----QKVG--KVARAI----CIMN---HPIPDTNDSHSCQVILPQ------------KQLGRKSDMYLFCCS-YAHNVAP  346 (445)
Q Consensus       293 ----~~~~--~~~r~i----~i~~---~~i~~~~~~~~~~i~~p~------------~~~~~~~~i~v~~~s-~~~~~aP  346 (445)
                          +...  +.+.+.    +.++   .+++.   ..++.+++.+            ..++.++.+|++.+| .|+..+|
T Consensus       289 ~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP  365 (502)
T TIGR02734       289 RYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQ---LAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAP  365 (502)
T ss_pred             cccccccccCCcCCeeeEEEEeeccccCcCCC---cCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCC
Confidence                0000  111122    2234   23321   1234444422            123346789998876 5789999


Q ss_pred             CCcEEEEEEeeeCC
Q 036458          347 NGQYIAFVSTEAET  360 (445)
Q Consensus       347 ~G~~~~~vst~~~~  360 (445)
                      +|+.++++.++++.
T Consensus       366 ~G~~~~~~~~~~~~  379 (502)
T TIGR02734       366 PGCENLYVLAPVPH  379 (502)
T ss_pred             CCCccEEEEEeCCC
Confidence            99999988887653

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.96  E-value=6.9e-27  Score=243.32  Aligned_cols=319  Identities=14%  Similarity=0.165  Sum_probs=191.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec-
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA-   82 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~-   82 (445)
                      +.||||||||++||+||++|+++|++|+|+||++++||+++|+++                    ++|.||.|++++.. 
T Consensus         1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~--------------------~G~~fD~G~~~~~~~   60 (492)
T TIGR02733         1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRR--------------------RGFTFDVGATQVAGL   60 (492)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceecc--------------------CCEEEeecceEEEec
Confidence            358999999999999999999999999999999999999999998                    56999999999864 


Q ss_pred             -Cch-hHHHhhhccccCceeeEEecceE--EEeCC-eEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhh-------
Q 036458           83 -NGG-LVRILIHTDVTKYLNFKAVDGSF--VYNKG-KIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYE-------  150 (445)
Q Consensus        83 -~~~-l~~~l~~~g~~~~l~~~~~~~~~--~~~~g-~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~-------  150 (445)
                       ++. +-+++.++|+... .+...++.+  .+.+| ..+.++.+ .+.+...+...+...  .+|+..+....       
T Consensus        61 ~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~d-~~~~~~~l~~~~p~~--~~~~~~~~~~~~~~~~~~  136 (492)
T TIGR02733        61 EPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWHD-PDRWQKERERQFPGS--ERFWQLCSQLHQSNWRFA  136 (492)
T ss_pred             CcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeecC-HHHHHHHHHHHCCCh--HHHHHHHHHHHHHHHHHh
Confidence             333 4455556776521 133344433  44566 45667777 555554443333111  11222211100       


Q ss_pred             ccCc----cc---------------cccccCCCCCHHHHHHHcC--CChhHHHHHHHHhhccccCCCCCCcHHHHHHHHH
Q 036458          151 EDDP----KS---------------HEGLDLNKVTAREIISKYG--LEDDTIDFIGHALALHINDSYLEEPAMDFVKRIK  209 (445)
Q Consensus       151 ~~~~----~~---------------~~~~~~~~~s~~~~~~~~~--l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~  209 (445)
                      ...+    ..               .........|+.+++++++  -++.++.++.....++......+.++...+.   
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~---  213 (492)
T TIGR02733       137 GRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGAT---  213 (492)
T ss_pred             hcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHH---
Confidence            0000    00               0000122478888888764  3556676664332222211110112221110   


Q ss_pred             HHHHHhhhccCCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCC-----eEEEcCEEEE
Q 036458          210 LYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEG-----ETAKCKKVVC  283 (445)
Q Consensus       210 ~~~~s~~~~~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g-----~~~~ad~VI~  283 (445)
                        +..+..  .....+||+||+++|+++|++.++..|++|+++++|++|..+ ++++.+|. .+|     +++.||.||+
T Consensus       214 --~~~~~~--~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~  288 (492)
T TIGR02733       214 --VLQMAQ--APHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVA  288 (492)
T ss_pred             --Hhhccc--cCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEE
Confidence              001111  112246899999999999999999999999999999999984 66666665 344     6789999999


Q ss_pred             CCCCC------Cc-----cc-cccc--eEE----EEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEEEecCCcccc
Q 036458          284 DPSYL------PD-----KV-QKVG--KVA----RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVA  345 (445)
Q Consensus       284 ~~~~~------p~-----~~-~~~~--~~~----r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~s~~~~~a  345 (445)
                      +.++.      +.     .. +...  +.+    ...+.++..........+...++.+     ...+|++..+.++..|
T Consensus       289 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~d~~~a  363 (492)
T TIGR02733       289 NLPPQSLLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDH-----QGSLFVSISQEGDGRA  363 (492)
T ss_pred             CCCHHHHHHhcCcccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCC-----CceEEEEeCCccccCC
Confidence            87642      21     10 0010  111    1223345422111112233333322     2378998877778899


Q ss_pred             CCCcEEEEEEeeeC
Q 036458          346 PNGQYIAFVSTEAE  359 (445)
Q Consensus       346 P~G~~~~~vst~~~  359 (445)
                      |+|+++++++++++
T Consensus       364 P~G~~~l~~~~~~~  377 (492)
T TIGR02733       364 PQGEATLIASSFTD  377 (492)
T ss_pred             CCCceEEEEEcCCC
Confidence            99999998888764

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.95  E-value=4.7e-27  Score=243.06  Aligned_cols=252  Identities=22%  Similarity=0.296  Sum_probs=157.5

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA   82 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~   82 (445)
                      +.+||||||||++||+||++||++|++|+|||||+++||+++|+++                    .+|.||+||+++..
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~--------------------~Gf~fd~G~~~~~~   61 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFEL--------------------DGFRFDTGPSWYLM   61 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEec--------------------cceEeccCcceeec
Confidence            3699999999999999999999999999999999999999999998                    46999999998875


Q ss_pred             Cc--hhHHHhhhccccCceeeEEecceE-E-EeCCeEEEccCChHHHhhccccCc--hhHHHHHHHHHHHHh-hhcc---
Q 036458           83 NG--GLVRILIHTDVTKYLNFKAVDGSF-V-YNKGKIYKVPATDVEALKSPLMGL--FEKRRARKFFIYVQE-YEED---  152 (445)
Q Consensus        83 ~~--~l~~~l~~~g~~~~l~~~~~~~~~-~-~~~g~~~~vp~~~~~~~~~~l~~~--~~k~~~~~f~~~~~~-~~~~---  152 (445)
                      ..  ++++.|.. .....+++...++.+ + +.+|....+..+ .+.+...+...  .+...+++++..+.+ ++..   
T Consensus        62 ~~~~~~~~~l~~-l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  139 (487)
T COG1233          62 PDPGPLFRELGN-LDADGLDLLPPDPAYRVFLPDGDAIDVYTD-LEATAELLESLEPGDGEALARYLRLLARLYELLAAL  139 (487)
T ss_pred             CchHHHHHHhcc-CcccceeeeccCCceeeecCCCCEEEecCC-HHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhh
Confidence            43  44444443 233347777766666 3 345778888877 44444333322  344455555553332 1100   


Q ss_pred             C--cccccc---cc----------CCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhh
Q 036458          153 D--PKSHEG---LD----------LNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLAR  217 (445)
Q Consensus       153 ~--~~~~~~---~~----------~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~  217 (445)
                      .  +.....   ..          ....+..+++..+--++.++..+.... ++.. ..-.++.  ++-   .++. ...
T Consensus       140 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~-~~~~-~~p~~~~--a~~---~~~~-~~~  211 (487)
T COG1233         140 LLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSA-VYGG-APPSTPP--ALY---LLLS-HLG  211 (487)
T ss_pred             cCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHH-HhcC-CCCCchh--HHH---HHHH-Hhc
Confidence            0  000000   00          011233333433311223333222221 1110 0001121  111   1111 111


Q ss_pred             ccCCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCC
Q 036458          218 FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSY  287 (445)
Q Consensus       218 ~~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~  287 (445)
                      +  .....||+||++.|+++|++.++++||+|+++++|++|.. ++|+.+++++ +|+.+++|.||++.++
T Consensus       212 ~--~~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         212 L--SGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             c--cCCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCch
Confidence            1  2234699999999999999999999999999999999999 5777666664 5568999999998765

>TIGR02730 carot_isom carotene isomerase

Probab=99.95  E-value=4.8e-26  Score=236.86  Aligned_cols=322  Identities=18%  Similarity=0.232  Sum_probs=201.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC-
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN-   83 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~-   83 (445)
                      |||||||+|++||++|.+|+++|++|+||||++++||++++++.                    .||.||.|++++... 
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~--------------------~G~~fd~g~~~~~~~~   60 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFER--------------------EGYRFDVGASMIFGFG   60 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEecc--------------------CCEEEEecchhheecC
Confidence            79999999999999999999999999999999999999999988                    569999999997531 


Q ss_pred             -----chhHHHhhhccccCceeeEEecceE--EEeCCeEEEccCChHHHhhccccCch--hHHHHHHHHHHHHhhhc---
Q 036458           84 -----GGLVRILIHTDVTKYLNFKAVDGSF--VYNKGKIYKVPATDVEALKSPLMGLF--EKRRARKFFIYVQEYEE---  151 (445)
Q Consensus        84 -----~~l~~~l~~~g~~~~l~~~~~~~~~--~~~~g~~~~vp~~~~~~~~~~l~~~~--~k~~~~~f~~~~~~~~~---  151 (445)
                           ..+.+.+...+.  .+++...+..+  .+.+|....++.+ .+.+...+...+  +...+.+|+..+.....   
T Consensus        61 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~d-~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~  137 (493)
T TIGR02730        61 DKGTTNLLTRALAAVGR--KLETIPDPVQIHYHLPNGLNVKVHRE-YDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLN  137 (493)
T ss_pred             CcccccHHHHHHHHcCC--cccccCCCccEEEECCCCeeEeeecC-HHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHH
Confidence                 123334443442  24444333323  3456767788877 666666654443  44556676665443110   


Q ss_pred             -c------Ccccc------------ccccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHH
Q 036458          152 -D------DPKSH------------EGLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYA  212 (445)
Q Consensus       152 -~------~~~~~------------~~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~  212 (445)
                       .      .+...            ........|+.++++++..++.++.++.............+.|+...+..   + 
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~---~-  213 (493)
T TIGR02730       138 SMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMV---F-  213 (493)
T ss_pred             hhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHh---h-
Confidence             0      00000            00001236777888887778888876643222111111112233322211   1 


Q ss_pred             HHhhhccCCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCC---
Q 036458          213 ESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYL---  288 (445)
Q Consensus       213 ~s~~~~~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~---  288 (445)
                         ..+ .....+||.+|+++|+++|.+.++.+|++|+++++|++|.. +++++.+|++ +|++++||.||++++.+   
T Consensus       214 ---~~~-~~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~  288 (493)
T TIGR02730       214 ---SDR-HYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRWDTF  288 (493)
T ss_pred             ---ccc-ccceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChHHHH
Confidence               111 11234689999999999999999999999999999999998 4678888875 78889999999987643   


Q ss_pred             ----Ccc-c--------cccc---eEEEEEEeeccCCCCCCCCCceEEEeCCC-c-CCCCCCEEEEEec-CCccccCCCc
Q 036458          289 ----PDK-V--------QKVG---KVARAICIMNHPIPDTNDSHSCQVILPQK-Q-LGRKSDMYLFCCS-YAHNVAPNGQ  349 (445)
Q Consensus       289 ----p~~-~--------~~~~---~~~r~i~i~~~~i~~~~~~~~~~i~~p~~-~-~~~~~~i~v~~~s-~~~~~aP~G~  349 (445)
                          |.. .        +...   .....-+.++.+..... ...+.++++.- . ....+.+|++.++ .|++++|+|+
T Consensus       289 ~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~  367 (493)
T TIGR02730       289 GKLLKAENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPG-TECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGH  367 (493)
T ss_pred             HHhCCccccchhhHHHHhhccCCCceEEEEEEecCccCCCC-CCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCc
Confidence                211 0        0000   11112223444332111 12223444421 1 1235678998876 5789999999


Q ss_pred             EEEEEEeeeC
Q 036458          350 YIAFVSTEAE  359 (445)
Q Consensus       350 ~~~~vst~~~  359 (445)
                      +++++.++.+
T Consensus       368 ~~i~~~~~~~  377 (493)
T TIGR02730       368 HIIHTFTPSS  377 (493)
T ss_pred             EEEEEecCCC
Confidence            9988777643

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.94  E-value=3.9e-25  Score=221.60  Aligned_cols=380  Identities=16%  Similarity=0.224  Sum_probs=240.0

Q ss_pred             cEEEECCChhHHHHHHHhhhCC--CeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN   83 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~   83 (445)
                      .|+|||||++||+||+.|+++|  .+|+|||+.++.||..+|+..                    .+|.||.||+.+...
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~--------------------~G~~~e~G~~~f~~~   61 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKI--------------------DGFLFERGPHHFLAR   61 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEee--------------------CCEEEeechhheecc
Confidence            5899999999999999999999  999999999999999999987                    569999999988765


Q ss_pred             -chhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCccccccccC
Q 036458           84 -GGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDL  162 (445)
Q Consensus        84 -~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~~~~  162 (445)
                       ..+++++.++|+.+.+.+......|+|.+|+++++|...  ++.-+....-++..+.++   +.++..  ++.+.  ..
T Consensus        62 ~~~~l~li~eLGled~l~~~~~~~~~i~~~gkl~p~P~~~--i~~ip~~~~~~~~~~~~~---~~~~~~--~~~~~--~~  132 (444)
T COG1232          62 KEEILDLIKELGLEDKLLWNSTARKYIYYDGKLHPIPTPT--ILGIPLLLLSSEAGLARA---LQEFIR--PKSWE--PK  132 (444)
T ss_pred             hHHHHHHHHHhCcHHhhccCCcccceEeeCCcEEECCccc--eeecCCccccchhHHHHH---HHhhhc--ccCCC--CC
Confidence             689999999999988887766667899999999999773  333332222112222222   222211  11111  22


Q ss_pred             CCCCHHHHHHHcCCChhHHH-HHHHHh-hccccCCCCCCcHHHHHH----HHHHHHHHhhhc-----c----CCCceEEe
Q 036458          163 NKVTAREIISKYGLEDDTID-FIGHAL-ALHINDSYLEEPAMDFVK----RIKLYAESLARF-----Q----GGSPYIYP  227 (445)
Q Consensus       163 ~~~s~~~~~~~~~l~~~~~~-~i~~~~-~l~~~~~~~~~~~~~~l~----~i~~~~~s~~~~-----~----g~s~~~~p  227 (445)
                      .+.++.+|++++ +.+++.+ ++...+ +.+..+. .+-++..++.    +.+.|...+..+     .    ....|.++
T Consensus       133 ~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~-~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~  210 (444)
T COG1232         133 QDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDA-DKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYL  210 (444)
T ss_pred             CCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCH-HHhhHHHhcchhhhhhhhhcchhhhhhhccCccccccccccccc
Confidence            568999999754 4555554 443332 3333211 0112221111    112222221100     0    01257788


Q ss_pred             CCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC------Ccc-----ccc--
Q 036458          228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL------PDK-----VQK--  294 (445)
Q Consensus       228 ~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~------p~~-----~~~--  294 (445)
                      ++|++.|++++++.+...   ++++++|+.|.++ ......+..+|+.+.||.||++.+..      ++.     .+.  
T Consensus       211 ~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~-~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~~~~~~~~~~~  286 (444)
T COG1232         211 RGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK-GAGKTIVDVGGEKITADGVISTAPLPELARLLGDEAVSKAAKELQ  286 (444)
T ss_pred             CccHHHHHHHHHHHhhhc---eeecceeeEEEEc-CCccEEEEcCCceEEcceEEEcCCHHHHHHHcCCcchhhhhhhcc
Confidence            999999999999887765   9999999999984 44445566788899999999986532      110     011  


Q ss_pred             cceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEE-Eec-CCccccCCCcEEEEEEeeeCCCC------cccc
Q 036458          295 VGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLF-CCS-YAHNVAPNGQYIAFVSTEAETDN------PEVE  366 (445)
Q Consensus       295 ~~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~-~~s-~~~~~aP~G~~~~~vst~~~~~~------~~~~  366 (445)
                      ...+..++..++++ .+...++.+++.+|.....    +-.+ .+| .-+...|+|+.++++....++++      .|+.
T Consensus       287 ~~s~~~vv~~~~~~-~~~~~~~~~g~~iad~~~~----~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~  361 (444)
T COG1232         287 YTSVVTVVVGLDEK-DNPALPDGYGLLIADDDPY----ILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEEL  361 (444)
T ss_pred             ccceEEEEEEeccc-cccCCCCceEEEEecCCCc----ceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHH
Confidence            12344555556654 1112245678888865421    2222 233 45778999999999887665433      3455


Q ss_pred             cHhHHhhcC---Cc--ccceeeeee------ccc--------cCCCCCC---CcEEEccCCCCCCccHhHHHHHHHHHHH
Q 036458          367 LKPGIDLLG---PV--DEIFFDTYD------RFV--------PTNNHEA---DHCFISTSYDATTHFESTVQDVLEMYTK  424 (445)
Q Consensus       367 l~~~~~~l~---~~--~~~~~~~~~------~~~--------~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~  424 (445)
                      ++.+++-|.   .+  .+.|+.+..      +|+        +.....+   .+|.+++++......-+|+......=++
T Consensus       362 ~~~~l~~L~~~~~~~~~~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~~d~I~~g~~aa~~  441 (444)
T COG1232         362 VAAVLDDLKKLGGINGDPVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEGVGLPDCIAAGKEAAEQ  441 (444)
T ss_pred             HHHHHHHHHHHcCcCcchhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCCCCchHHHHHHHHHHHH
Confidence            555555332   22  222333221      232        2222233   7999998888778888999888775544


Q ss_pred             h
Q 036458          425 I  425 (445)
Q Consensus       425 ~  425 (445)
                      +
T Consensus       442 l  442 (444)
T COG1232         442 L  442 (444)
T ss_pred             h
Confidence            3

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.94  E-value=3e-24  Score=221.86  Aligned_cols=382  Identities=13%  Similarity=0.138  Sum_probs=227.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhC----CCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccce
Q 036458            4 DYDVIVLGTGLKECILSGVLSVD----GLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKF   79 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~   79 (445)
                      ..||+|||||++||+||+.|+++    |++|+|+|+++++||++.|.+.                    .||.+|+|+++
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~--------------------~g~~~e~G~~~   61 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKE--------------------DGYLIERGPDS   61 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEee--------------------CCEEEecCccc
Confidence            46999999999999999999999    9999999999999999999876                    46999999999


Q ss_pred             eecCc-hhHHHhhhccccCceeeEEecceEEEeC-CeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccc
Q 036458           80 MMANG-GLVRILIHTDVTKYLNFKAVDGSFVYNK-GKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSH  157 (445)
Q Consensus        80 l~~~~-~l~~~l~~~g~~~~l~~~~~~~~~~~~~-g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~  157 (445)
                      ++... .+.+++.++|+..++.+......|++.+ |+.+++|.+..+.+...+.++.++.+..  +..   +.   +.. 
T Consensus        62 ~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~---~~---~~~-  132 (462)
T TIGR00562        62 FLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKLRAG--MDF---IR---PAS-  132 (462)
T ss_pred             cccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhHHhh--hhh---cc---CCC-
Confidence            98654 4888888899876654322334566665 8888999876666666666766553322  111   11   110 


Q ss_pred             ccccCCCCCHHHHHHHcCCChhHHH-HHHHHh-hccccCCCCCCcHHHHHHHHHHHHH-------Hh------------h
Q 036458          158 EGLDLNKVTAREIISKYGLEDDTID-FIGHAL-ALHINDSYLEEPAMDFVKRIKLYAE-------SL------------A  216 (445)
Q Consensus       158 ~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~-------s~------------~  216 (445)
                         ...++|+.||+++. +.+.+.+ ++.... ..+..+ ..+.++..+++++.....       .+            .
T Consensus       133 ---~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~-~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  207 (462)
T TIGR00562       133 ---PGKDESVEEFVRRR-FGDEVVENLIEPLLSGIYAGD-PSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQ  207 (462)
T ss_pred             ---CCCCcCHHHHHHHh-cCHHHHHHHHHHHhcccccCC-HHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCcccccc
Confidence               11248999999865 4454443 333332 222221 111233333333321110       00            0


Q ss_pred             hcc-C-CCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCC-----
Q 036458          217 RFQ-G-GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYL-----  288 (445)
Q Consensus       217 ~~~-g-~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~-----  288 (445)
                      .|. + +..+.++.+|+++|++++++.+.  .++|++|++|++|..+ ++++. |+ .+|++++||+||++.+..     
T Consensus       208 ~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~-~~~~~-v~~~~g~~~~ad~VI~t~P~~~~~~l  283 (462)
T TIGR00562       208 LTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR-GSNYT-LELDNGVTVETDSVVVTAPHKAAAGL  283 (462)
T ss_pred             ccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec-CCcEE-EEECCCcEEEcCEEEECCCHHHHHHH
Confidence            110 1 12256789999999999987664  3789999999999884 44443 44 467789999999986531     


Q ss_pred             -Cc---cc----cc--cceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEEEe-cCCccccCCCcEEEEEEee
Q 036458          289 -PD---KV----QK--VGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCC-SYAHNVAPNGQYIAFVSTE  357 (445)
Q Consensus       289 -p~---~~----~~--~~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~-s~~~~~aP~G~~~~~vst~  357 (445)
                       |.   ..    ..  ...+....+.++++... .....+.+++|....  ...+-+... +..+..+|+|..++.+...
T Consensus       284 l~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~-~~~~~~g~l~~~~~~--~~~~~~i~~s~~~p~~~p~g~~~l~~~~~  360 (462)
T TIGR00562       284 LSELSNSASSHLDKIHSPPVANVNLGFPEGSVD-GELEGFGFLISRSSK--FAILGCIFTSKLFPNRAPPGKTLLTAYIG  360 (462)
T ss_pred             hcccCHHHHHHHhcCCCCceEEEEEEEchHHcC-CCCCceEEEccCCCC--CceEEEEEEccccCCcCCCCcEEEEEEeC
Confidence             21   11    11  12344444555554211 112345555664431  112222223 3346778999877644332


Q ss_pred             eCC------CCcccccHhHHhhcC---Cccc--ceee---eee---ccccC--------CC---CCCCcEEEccCCCCCC
Q 036458          358 AET------DNPEVELKPGIDLLG---PVDE--IFFD---TYD---RFVPT--------NN---HEADHCFISTSYDATT  409 (445)
Q Consensus       358 ~~~------~~~~~~l~~~~~~l~---~~~~--~~~~---~~~---~~~~~--------~~---~~~~~~~~~~~~d~~~  409 (445)
                      ...      .++++.++.+++-|.   .+..  .+..   |..   .|.+-        ..   ....+|+++.++-.+.
T Consensus       361 g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~  440 (462)
T TIGR00562       361 GATDESIVDLSENEIINIVLRDLKKVLNINNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGV  440 (462)
T ss_pred             CCCCccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCCC
Confidence            111      122333444444332   1211  1211   111   12111        00   1125999999998888


Q ss_pred             ccHhHHHHHHHHHHHhc
Q 036458          410 HFESTVQDVLEMYTKIT  426 (445)
Q Consensus       410 ~~~~~~~~~~~~~~~~~  426 (445)
                      .+|+|+...+++-+++.
T Consensus       441 ~i~~~i~sg~~~a~~~~  457 (462)
T TIGR00562       441 GIPDCIDQGKAAASDVL  457 (462)
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            99999999999988874

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK07233 hypothetical protein; Provisional

Probab=99.94  E-value=3.3e-24  Score=219.52  Aligned_cols=248  Identities=22%  Similarity=0.305  Sum_probs=167.1

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec-Cc
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA-NG   84 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~-~~   84 (445)
                      +|||||||++||+||+.|+++|++|+|+|+++++||++.|++.                    ++|.+|.|+|++.. ..
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~--------------------~g~~~d~g~~~~~~~~~   60 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEF--------------------GGLPIERFYHHIFKSDE   60 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecc--------------------CCcchhhhhhhhccccH
Confidence            5999999999999999999999999999999999999999887                    46999999998875 45


Q ss_pred             hhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCccccccccCCC
Q 036458           85 GLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNK  164 (445)
Q Consensus        85 ~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~~~~~~  164 (445)
                      ++.+++.++|+...+.+...... ++.+|+.++++.. .+.+....+++.++.++.........     .....  ..+.
T Consensus        61 ~~~~l~~~lg~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~  131 (434)
T PRK07233         61 ALLELLDELGLEDKLRWRETKTG-YYVDGKLYPLGTP-LELLRFPHLSLIDKFRLGLLTLLARR-----IKDWR--ALDK  131 (434)
T ss_pred             HHHHHHHHcCCCCceeeccCceE-EEECCeEecCCCH-HHHHcCCCCCHHHHHHhHHHHHhhhh-----ccccc--cccc
Confidence            77888888998766555442222 3446666655422 44444444555554333222111111     00011  2346


Q ss_pred             CCHHHHHHHcCCChhHHHHHHHHhh-ccccCCCCCCcHHHHHHHHHHHHHHhhhccC-CCceEEeCCCcchHHHHHHHHH
Q 036458          165 VTAREIISKYGLEDDTIDFIGHALA-LHINDSYLEEPAMDFVKRIKLYAESLARFQG-GSPYIYPLYGLGELPQAFARLS  242 (445)
Q Consensus       165 ~s~~~~~~~~~l~~~~~~~i~~~~~-l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g-~s~~~~p~gG~~~L~q~l~r~~  242 (445)
                      +|+.+|++++..++....++...+. ++.. ...+.++...+.++..+..  ..+.. ...+.||++|++.|+++|.+.+
T Consensus       132 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~gG~~~l~~~l~~~l  208 (434)
T PRK07233        132 VPAEEWLRRWSGEGVYEVFWEPLLESKFGD-YADDVSAAWLWSRIKRRGN--RRYSLFGEKLGYLEGGFATLIDALAEAI  208 (434)
T ss_pred             ccHHHHHHHhcCHHHHHHHHHHHHhcccCC-CccccCHHHHHHHHhhhhc--cccccCCceEeccCCCHHHHHHHHHHHH
Confidence            8999999876544444444433322 2221 1113355555544433211  11100 2246799999999999999999


Q ss_pred             HHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 036458          243 AVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPS  286 (445)
Q Consensus       243 ~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~  286 (445)
                      ...|++|+++++|++|..+ +++++++..+++++.||+||++.+
T Consensus       209 ~~~g~~v~~~~~V~~i~~~-~~~~~~~~~~~~~~~ad~vI~a~p  251 (434)
T PRK07233        209 EARGGEIRLGTPVTSVVID-GGGVTGVEVDGEEEDFDAVISTAP  251 (434)
T ss_pred             HhcCceEEeCCCeeEEEEc-CCceEEEEeCCceEECCEEEECCC
Confidence            9999999999999999984 566666777888999999999865

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.93  E-value=1.7e-23  Score=216.38  Aligned_cols=380  Identities=10%  Similarity=0.136  Sum_probs=218.3

Q ss_pred             cEEEECCChhHHHHHHHhhhC------CCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccce
Q 036458            6 DVIVLGTGLKECILSGVLSVD------GLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKF   79 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~------G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~   79 (445)
                      +|+|||||++||+||+.|+++      |++|+|||+++++||++.|.+.                    .+|.+|+|+++
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~--------------------~g~~~e~G~~~   62 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEE--------------------KDFIMESGADS   62 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEee--------------------CCEEEecCcHH
Confidence            699999999999999999986      3799999999999999999886                    46999999999


Q ss_pred             eecC-chhHHHhhhccccCceeeEEecceEEEeCCeEEEccCC--------hHHHhhccccCchhHHHHHHHHHHHHhhh
Q 036458           80 MMAN-GGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPAT--------DVEALKSPLMGLFEKRRARKFFIYVQEYE  150 (445)
Q Consensus        80 l~~~-~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~--------~~~~~~~~l~~~~~k~~~~~f~~~~~~~~  150 (445)
                      ++.. ..+.+++.++|+.+++.+..-...|+|.+|..+++|.+        ..+.+...++++..|.      ..+.++-
T Consensus        63 i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~------~~~~~~~  136 (463)
T PRK12416         63 IVARNEHVMPLVKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKI------VALKDFI  136 (463)
T ss_pred             HhcCCHHHHHHHHHcCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHHHH------Hhhhhhc
Confidence            9754 46778888899887655544445677777777777644        2223333333332221      1111111


Q ss_pred             ccCccccccccCCCCCHHHHHHHcCCChhHHH-HHHHHh-hccccCCCCCCcHHHHHHHHHHHHHHhh-----------h
Q 036458          151 EDDPKSHEGLDLNKVTAREIISKYGLEDDTID-FIGHAL-ALHINDSYLEEPAMDFVKRIKLYAESLA-----------R  217 (445)
Q Consensus       151 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~s~~-----------~  217 (445)
                      .  +.  .. ..++.|+.+|+++. +.++..+ ++...+ +++..+ ..+.++...+..+..+....+           .
T Consensus       137 ~--~~--~~-~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~-~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~  209 (463)
T PRK12416        137 T--KN--KE-FTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGK-LNELTMASTLPYLLDYKNKYGSIIKGFEENKKQ  209 (463)
T ss_pred             c--CC--CC-CCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCC-cccccHHHhhHHHHHHHHhcCcHHHHHHHhhhc
Confidence            1  11  00 12468999999865 4454443 343332 223221 112233223333222211110           0


Q ss_pred             --ccCCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCC------
Q 036458          218 --FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYL------  288 (445)
Q Consensus       218 --~~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~------  288 (445)
                        ..++..+.++++|++.|+++|++.+..  ++|++|++|++|..+ ++++ .|+ .+|+++.||.||++.+..      
T Consensus       210 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~-~~~~-~v~~~~g~~~~ad~VI~a~p~~~~~~ll  285 (463)
T PRK12416        210 FQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ-GDRY-EISFANHESIQADYVVLAAPHDIAETLL  285 (463)
T ss_pred             cCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc-CCEE-EEEECCCCEEEeCEEEECCCHHHHHhhc
Confidence              013345778999999999999887643  689999999999985 4444 454 477789999999986421      


Q ss_pred             --Cc---cccc--cceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEEEecC--CccccCCCcEEEEEEeee-
Q 036458          289 --PD---KVQK--VGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSY--AHNVAPNGQYIAFVSTEA-  358 (445)
Q Consensus       289 --p~---~~~~--~~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~s~--~~~~aP~G~~~~~vst~~-  358 (445)
                        |.   ....  ...+....+.++++..... ...+.+++|+.. +.  .+--+..++  -+..+|++..++.+..-. 
T Consensus       286 ~~~~l~~~~~~~~~~~~~~v~l~~~~~~~~~~-~~g~G~l~~~~~-~~--~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~  361 (463)
T PRK12416        286 QSNELNEQFHTFKNSSLISIYLGFDILDEQLP-ADGTGFIVTENS-DL--HCDACTWTSRKWKHTSGKQKLLVRMFYKST  361 (463)
T ss_pred             CCcchhHHHhcCCCCceEEEEEEechhhcCCC-CCceEEEeeCCC-CC--eEEEEEeecCCCCCcCCCCeEEEEEEeCCC
Confidence              11   0111  1233334445554422111 234555666442 11  111112221  234567666655443210 


Q ss_pred             -C-----CCCccccc-HhHH---h-hcCCccc-cee---eee---eccccC--------CC---CCCCcEEEccCCCCCC
Q 036458          359 -E-----TDNPEVEL-KPGI---D-LLGPVDE-IFF---DTY---DRFVPT--------NN---HEADHCFISTSYDATT  409 (445)
Q Consensus       359 -~-----~~~~~~~l-~~~~---~-~l~~~~~-~~~---~~~---~~~~~~--------~~---~~~~~~~~~~~~d~~~  409 (445)
                       +     ...+++++ +.++   + +|+...+ ...   .|.   ..|...        ..   ....+|+++.++-.+.
T Consensus       362 ~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~  441 (463)
T PRK12416        362 NPVYETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGV  441 (463)
T ss_pred             CCCchhhhcCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccc
Confidence             0     01123333 2222   2 5542111 111   111   122111        00   1236999999999999


Q ss_pred             ccHhHHHHHHHHHHHhc
Q 036458          410 HFESTVQDVLEMYTKIT  426 (445)
Q Consensus       410 ~~~~~~~~~~~~~~~~~  426 (445)
                      .++.|+...++.-++|.
T Consensus       442 ~i~~ai~sg~~aA~~i~  458 (463)
T PRK12416        442 GIGACIGNGKNTANEII  458 (463)
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            99999999999988874

>PLN02576 protoporphyrinogen oxidase

Probab=99.93  E-value=3.3e-23  Score=215.98  Aligned_cols=387  Identities=16%  Similarity=0.160  Sum_probs=226.2

Q ss_pred             CcccEEEECCChhHHHHHHHhhhC-CCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceee
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVD-GLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMM   81 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~   81 (445)
                      ..+||+|||||++||+||++|+++ |++|+|+|+++++||++.|.+.                    .+|.+|.|||++.
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~--------------------~g~~~d~G~~~~~   70 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSE--------------------DGFIWEEGPNSFQ   70 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEecc--------------------CCeEEecCCchhc
Confidence            457999999999999999999999 9999999999999999999887                    4699999999998


Q ss_pred             cCchhHHHhhhccccCceeeEEe-cceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCccccccc
Q 036458           82 ANGGLVRILIHTDVTKYLNFKAV-DGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGL  160 (445)
Q Consensus        82 ~~~~l~~~l~~~g~~~~l~~~~~-~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~~  160 (445)
                      ...+.+..+.+.|+.+++.+... ...|++.+|+++++|.+..+.+...++++.+|.++..-  .. .+..  +..    
T Consensus        71 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~--~~~----  141 (496)
T PLN02576         71 PSDPELTSAVDSGLRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTFDLLSAPGKIRAGLG--AF-GWKR--PPP----  141 (496)
T ss_pred             cCcHHHHHHHHcCChhheecCCCCceEEEEECCEEEEcCCChHHhcCcCcCChhHHHHHhHH--Hh-hccC--CCC----
Confidence            87777777777788777655432 34567789999999988666666667777665433211  11 1100  100    


Q ss_pred             cCCCCCHHHHHHHcCCChhHHHH-HHHHh-hccccCCCCCCcHHHHHHHHHHHHH-----------Hh------------
Q 036458          161 DLNKVTAREIISKYGLEDDTIDF-IGHAL-ALHINDSYLEEPAMDFVKRIKLYAE-----------SL------------  215 (445)
Q Consensus       161 ~~~~~s~~~~~~~~~l~~~~~~~-i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~-----------s~------------  215 (445)
                      ...++|+.+|+++. +.+.+.+. +.... +++..+ .-+.++..+++++.....           ..            
T Consensus       142 ~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~-~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~  219 (496)
T PLN02576        142 PGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGD-PSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPR  219 (496)
T ss_pred             CCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCC-HHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhccccccccc
Confidence            12468999999875 66665543 33322 222221 111233334443322110           00            


Q ss_pred             ----hhccCCCceEEeCCCcchHHHHHHHHHHHcC-cEEEeCCcceeEEEcCCCcEE-EEEe-CC-eEEEcCEEEECCCC
Q 036458          216 ----ARFQGGSPYIYPLYGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDGDGKVI-GVTS-EG-ETAKCKKVVCDPSY  287 (445)
Q Consensus       216 ----~~~~g~s~~~~p~gG~~~L~q~l~r~~~~~G-g~i~l~~~V~~I~~~~~g~~~-~v~~-~g-~~~~ad~VI~~~~~  287 (445)
                          ... +.....++++|+++|+++|++.+   + ++|++|++|++|..+.++.+. .+.. +| +++.||+||++.+.
T Consensus       220 ~~~~~~~-~~~~~~~~~gG~~~L~~~la~~l---~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~  295 (496)
T PLN02576        220 DPRLPKP-KGQTVGSFRGGLQTLPDALAKRL---GKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPL  295 (496)
T ss_pred             ccccccc-cCCeeEeccchHHHHHHHHHHhh---CcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCH
Confidence                000 11234677999999999998643   5 789999999999985333232 2222 45 47999999998642


Q ss_pred             C------Cc---cc----cc--cceEEEEEEeeccCCCCCC-----CCCceEEEeCCCcCCCCCCEEEEEe-cCCccccC
Q 036458          288 L------PD---KV----QK--VGKVARAICIMNHPIPDTN-----DSHSCQVILPQKQLGRKSDMYLFCC-SYAHNVAP  346 (445)
Q Consensus       288 ~------p~---~~----~~--~~~~~r~i~i~~~~i~~~~-----~~~~~~i~~p~~~~~~~~~i~v~~~-s~~~~~aP  346 (445)
                      .      +.   ..    ..  ...+....+.++++....+     ....+..+.|+.+  ..+.+-+... ...+..+|
T Consensus       296 ~~l~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~--~~~~lg~~~~s~~~p~~~~  373 (496)
T PLN02576        296 YVVSEMLRPKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQ--GVKTLGTIYSSSLFPDRAP  373 (496)
T ss_pred             HHHHHHhcccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCC--CCceEEEEeecCcCCCCCC
Confidence            1      11   00    11  1223333444444321110     1123434444332  1122222223 23456788


Q ss_pred             CCcEEEEEEeeeC------CCCcccccHhHHh----hcCCcc--c-cee---eeee---ccccC--------CC--CCC-
Q 036458          347 NGQYIAFVSTEAE------TDNPEVELKPGID----LLGPVD--E-IFF---DTYD---RFVPT--------NN--HEA-  396 (445)
Q Consensus       347 ~G~~~~~vst~~~------~~~~~~~l~~~~~----~l~~~~--~-~~~---~~~~---~~~~~--------~~--~~~-  396 (445)
                      +|..++.+-....      ..++++.++.+++    +++.-.  + ..+   .|..   .|.+-        ..  ... 
T Consensus       374 ~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~  453 (496)
T PLN02576        374 EGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLG  453 (496)
T ss_pred             CCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcC
Confidence            8876543222111      1122333333333    333111  1 111   1221   12110        00  012 


Q ss_pred             -CcEEEccCCCCCCccHhHHHHHHHHHHHhc
Q 036458          397 -DHCFISTSYDATTHFESTVQDVLEMYTKIT  426 (445)
Q Consensus       397 -~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  426 (445)
                       .|++++..+-.+...++|+..++++-++|.
T Consensus       454 ~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~  484 (496)
T PLN02576        454 LPGLFLGGNYRGGVALGKCVESGYEAADLVI  484 (496)
T ss_pred             CCCEEEeccccCCccHHHHHHHHHHHHHHHH
Confidence             599999988888888999999999999884

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.93  E-value=1e-22  Score=209.63  Aligned_cols=379  Identities=12%  Similarity=0.120  Sum_probs=217.7

Q ss_pred             cEEEECCChhHHHHHHHhhhCC--CeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN   83 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~   83 (445)
                      +|+|||||++||+||+.|+++|  ++|+|||+++++||++.|.+.                    .++.+|+|++++...
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~--------------------~g~~~d~G~~~~~~~   61 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRK--------------------DGFPIELGPESFLAR   61 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEee--------------------CCeEEecChHHhcCC
Confidence            6999999999999999999988  899999999999999999887                    469999999987654


Q ss_pred             -chhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChH--------HHhhccccCchhHHHHHHHHHHHHhhhccCc
Q 036458           84 -GGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDV--------EALKSPLMGLFEKRRARKFFIYVQEYEEDDP  154 (445)
Q Consensus        84 -~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~--------~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~  154 (445)
                       .++.+++.++|+..++.+..-...+++.+|+.+++|....        ..+...+++..++.+      ....+.   .
T Consensus        62 ~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---~  132 (451)
T PRK11883         62 KPSAPALVKELGLEDELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLR------AAADLR---P  132 (451)
T ss_pred             cHHHHHHHHHcCCccceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHH------hhCccc---C
Confidence             3677888889987654433223346777888888775310        111111222111111      011110   0


Q ss_pred             cccccccCCCCCHHHHHHHcCCChhHHH-HHHHHh-hccccCCCCCCcHHHHHHHHHHHHHH-----------hhh---c
Q 036458          155 KSHEGLDLNKVTAREIISKYGLEDDTID-FIGHAL-ALHINDSYLEEPAMDFVKRIKLYAES-----------LAR---F  218 (445)
Q Consensus       155 ~~~~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~s-----------~~~---~  218 (445)
                      .  ......++|+.+|+++. +++...+ ++.... .++.. +..+.++...+..+..+..+           ...   +
T Consensus       133 ~--~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (451)
T PRK11883        133 P--RWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAG-DIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKK  208 (451)
T ss_pred             C--CCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecC-ChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCC
Confidence            0  01112468999999763 5555443 333222 23322 11122333333222221111           000   1


Q ss_pred             cCCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC-------Ccc
Q 036458          219 QGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL-------PDK  291 (445)
Q Consensus       219 ~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~-------p~~  291 (445)
                       ....+.++++|++.|++++++.+...  +|++|++|++|..+ ++.+.....+|++++||+||++.+..       +..
T Consensus       209 -~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~-~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~~  284 (451)
T PRK11883        209 -TKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS-GDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFVAPP  284 (451)
T ss_pred             -CCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc-CCeEEEEECCCCEEEcCEEEECCCHHHHHHhccChh
Confidence             12345689999999999988765432  89999999999884 44443233578889999999986531       111


Q ss_pred             c----cc--cceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEE-EEEec-CCccccCCCcEEEEEEeeeCC---
Q 036458          292 V----QK--VGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMY-LFCCS-YAHNVAPNGQYIAFVSTEAET---  360 (445)
Q Consensus       292 ~----~~--~~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~-v~~~s-~~~~~aP~G~~~~~vst~~~~---  360 (445)
                      .    +.  ...+.+..+.++++++..  .....++++...   +.++. +...+ ..+..+|+|..++.+....+.   
T Consensus       285 ~~~~~~~~~~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~  359 (451)
T PRK11883        285 AFALFKTIPSTSVATVALAFPESATNL--PDGTGFLVARNS---DYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEA  359 (451)
T ss_pred             HHHHHhCCCCCceEEEEEEeccccCCC--CCceEEEecCCC---CCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCch
Confidence            0    11  234455556667764211  223445565432   22332 22233 346678999888766553321   


Q ss_pred             ---CCcccccHhHHhhc----CC-cccceee---eee---ccccC--------CCCC--CCcEEEccCCCCCCccHhHHH
Q 036458          361 ---DNPEVELKPGIDLL----GP-VDEIFFD---TYD---RFVPT--------NNHE--ADHCFISTSYDATTHFESTVQ  416 (445)
Q Consensus       361 ---~~~~~~l~~~~~~l----~~-~~~~~~~---~~~---~~~~~--------~~~~--~~~~~~~~~~d~~~~~~~~~~  416 (445)
                         .++++.++.+++.|    +. .......   |..   .|.+.        ....  -+|+|+++.+-.+...+.|+.
T Consensus       360 ~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~~~~l~~aG~~~~g~~i~~av~  439 (451)
T PRK11883        360 VVDATDEELVAFVLADLSKVMGITGDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPHYPGLYVAGASFEGVGLPDCIA  439 (451)
T ss_pred             hccCCHHHHHHHHHHHHHHHhCCCCCceEEEEeecCccCCCCCccHHHHHHHHHHhhhhCCCEEEECcccCCccHHHHHH
Confidence               12333344444433    31 1111111   111   11111        0011  248999987777778999999


Q ss_pred             HHHHHHHHhc
Q 036458          417 DVLEMYTKIT  426 (445)
Q Consensus       417 ~~~~~~~~~~  426 (445)
                      ..+.+-++|.
T Consensus       440 sg~~~a~~i~  449 (451)
T PRK11883        440 QAKRAAARLL  449 (451)
T ss_pred             HHHHHHHHHH
Confidence            9999988875

>PRK07208 hypothetical protein; Provisional

Probab=99.90  E-value=8.1e-22  Score=204.70  Aligned_cols=251  Identities=19%  Similarity=0.221  Sum_probs=160.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEeccccee
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFM   80 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l   80 (445)
                      |....||+|||||++||+||+.|+++|++|+|+|+++++||++.|.+.                    .+|.+|+|+|++
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~--------------------~g~~~d~G~h~~   60 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTY--------------------KGNRFDIGGHRF   60 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeecc--------------------CCceEccCCcee
Confidence            677899999999999999999999999999999999999999999876                    469999999998


Q ss_pred             ecC-chhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccccc
Q 036458           81 MAN-GGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEG  159 (445)
Q Consensus        81 ~~~-~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~  159 (445)
                      +.. .++.+++.+++..+.+... ....+++.+|+.+.+|.+..+.+.  .+++.++  ++....++...  ..+     
T Consensus        61 ~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~g~~~~~p~~~~~~l~--~~~~~~~--~~~~~~~~~~~--~~~-----  128 (479)
T PRK07208         61 FSKSPEVMDLWNEILPDDDFLLR-PRLSRIYYRGKFFDYPLKAFDALK--NLGLWRT--AKCGASYLKAR--LRP-----  128 (479)
T ss_pred             ccCCHHHHHHHHHhcCCCccccc-cccceEEECCEEecCCcchhHHHH--hCCHhHH--HHHHHHHHHHh--cCC-----
Confidence            854 4667777777763332222 223456668888888876333332  2333322  11111222211  001     


Q ss_pred             ccCCCCCHHHHHHHcCCChhHHH-HHHHH-hhccccCCCCCCcHHHHHHH---------HHHHHHHhh--------hcc-
Q 036458          160 LDLNKVTAREIISKYGLEDDTID-FIGHA-LALHINDSYLEEPAMDFVKR---------IKLYAESLA--------RFQ-  219 (445)
Q Consensus       160 ~~~~~~s~~~~~~~~~l~~~~~~-~i~~~-~~l~~~~~~~~~~~~~~l~~---------i~~~~~s~~--------~~~-  219 (445)
                       ..+++|+.+|+++. +.+.+.+ ++... ..++..+ .-+.++..++.+         ++..+....        ... 
T Consensus       129 -~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (479)
T PRK07208        129 -RKEEDSFEDWVINR-FGRRLYSTFFKGYTEKVWGVP-CDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETS  205 (479)
T ss_pred             -CCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhhhCCC-hHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCcccc
Confidence             01458999999864 4444433 33332 2233321 111222222211         111121110        000 


Q ss_pred             CCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe---CCe--EEEcCEEEECCC
Q 036458          220 GGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS---EGE--TAKCKKVVCDPS  286 (445)
Q Consensus       220 g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~---~g~--~~~ad~VI~~~~  286 (445)
                      ....+.||++|+++|+++|.+.++..|++|++|++|++|..++++.+.++..   +|+  ++.||+||++.+
T Consensus       206 ~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p  277 (479)
T PRK07208        206 LIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMP  277 (479)
T ss_pred             ceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCC
Confidence            0235789999999999999999999999999999999999854444444443   343  689999999865

>PLN02612 phytoene desaturase

Probab=99.88  E-value=1.1e-20  Score=198.99  Aligned_cols=253  Identities=16%  Similarity=0.178  Sum_probs=167.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN   83 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~   83 (445)
                      ..+|+|||+|++||+||++|+++|++|+++|+++++||++.|++..                   +++++|.|+|+++..
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~-------------------~G~~~D~G~h~~~g~  153 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE-------------------DGDWYETGLHIFFGA  153 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC-------------------CCCEEcCCceEEeCC
Confidence            4789999999999999999999999999999999999999998752                   468999999999854


Q ss_pred             -chhHHHhhhccccCceeeEEecceEEEe--CCeEE--E----ccCC---hHHHhh-ccccCchhHHHHHH-HHHHHHhh
Q 036458           84 -GGLVRILIHTDVTKYLNFKAVDGSFVYN--KGKIY--K----VPAT---DVEALK-SPLMGLFEKRRARK-FFIYVQEY  149 (445)
Q Consensus        84 -~~l~~~l~~~g~~~~l~~~~~~~~~~~~--~g~~~--~----vp~~---~~~~~~-~~l~~~~~k~~~~~-f~~~~~~~  149 (445)
                       .++.+++.++|+.+.+.|......+.+.  ++...  .    .|..   ..+.+. ...+++.+|.++.. ++....  
T Consensus       154 ~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~--  231 (567)
T PLN02612        154 YPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIV--  231 (567)
T ss_pred             CchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhc--
Confidence             4678888899998777766544433222  22222  2    2222   122222 23345545433211 110000  


Q ss_pred             hccCccccccccCCCCCHHHHHHHcCCChhHHH-HHHHHh-hccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEe
Q 036458          150 EEDDPKSHEGLDLNKVTAREIISKYGLEDDTID-FIGHAL-ALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYP  227 (445)
Q Consensus       150 ~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p  227 (445)
                       ...+. ..  ..++.|+.+|+++.+.++.+.+ ++...+ ++...+ ..+.++...+..+..++.  ..  +++...|+
T Consensus       232 -~~~~~-~~--~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~-p~~~S~~~~l~~l~~~l~--~~--~gs~~~~~  302 (567)
T PLN02612        232 -GGQAY-VE--AQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFIN-PDELSMQCILIALNRFLQ--EK--HGSKMAFL  302 (567)
T ss_pred             -ccchh-hh--hcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-HHHhhHHHHHHHHHHHHh--cc--CCceEeee
Confidence             00010 11  2356899999999999987765 443332 232211 112234444444443322  11  34566777


Q ss_pred             CCCc-chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCC
Q 036458          228 LYGL-GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPS  286 (445)
Q Consensus       228 ~gG~-~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~  286 (445)
                      .|+. ..|++++++.++..|++|++|++|++|..+++++++++. .+|+++.||+||++.+
T Consensus       303 ~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p  363 (567)
T PLN02612        303 DGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP  363 (567)
T ss_pred             cCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence            7775 678999999888899999999999999986567666676 4788999999999854

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.88  E-value=7.3e-21  Score=196.47  Aligned_cols=255  Identities=19%  Similarity=0.214  Sum_probs=168.6

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC-c
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN-G   84 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~-~   84 (445)
                      +|+|||+|++||++|+.|+++|++|+|+|+++++||+++++...                   ++|.+|.|+|+++.. .
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~-------------------~g~~~d~G~~~~~~~~~   61 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG-------------------DGNHIEMGLHVFFGCYA   61 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC-------------------CCceEeeceEEecCchH
Confidence            58999999999999999999999999999999999999998531                   469999999999853 4


Q ss_pred             hhHHHhhhccccCceeeEEecceEEEeCCeEEE--------cc-CChHHHhhccccCchhHHHHHHHHHH---HHh---h
Q 036458           85 GLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYK--------VP-ATDVEALKSPLMGLFEKRRARKFFIY---VQE---Y  149 (445)
Q Consensus        85 ~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~--------vp-~~~~~~~~~~l~~~~~k~~~~~f~~~---~~~---~  149 (445)
                      ++.+++.++|+.+.+.+......|...+++...        .| ......++...+++.+|.++......   ...   +
T Consensus        62 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~  141 (474)
T TIGR02732        62 NLFRLMKKVGAEDNLLLKEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDY  141 (474)
T ss_pred             HHHHHHHHcCCccccccccceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhcccc
Confidence            777888889987665544322223333444322        23 12245566677888887655443311   111   1


Q ss_pred             hccCccccccccCCCCCHHHHHHHcCCChhHHH-HHHHHh-hccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEe
Q 036458          150 EEDDPKSHEGLDLNKVTAREIISKYGLEDDTID-FIGHAL-ALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYP  227 (445)
Q Consensus       150 ~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p  227 (445)
                      ... ...++  ..+++|+.+|+++++.++.+.+ ++...+ ++...+ ..+.++..++..++.+.  ...  .++...++
T Consensus       142 ~~~-~~~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~-~~~~Sa~~~~~~~~~~~--~~~--~~s~~~~~  213 (474)
T TIGR02732       142 DGA-MKTIR--DLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFID-CENISARCMLTIFMLFA--AKT--EASKLRML  213 (474)
T ss_pred             chh-hhhhh--hhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHH--hCC--Ccceeeee
Confidence            100 01111  2246899999999998886444 443322 222211 11234445555444222  222  34566789


Q ss_pred             CCCcch-HHHHHHHHHHHcCcEEEeCCcceeEEEcC--CC--cEEEEEe-CC---eEEEcCEEEECCCC
Q 036458          228 LYGLGE-LPQAFARLSAVYGGTYMLNKPECKVEFDG--DG--KVIGVTS-EG---ETAKCKKVVCDPSY  287 (445)
Q Consensus       228 ~gG~~~-L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~--~g--~~~~v~~-~g---~~~~ad~VI~~~~~  287 (445)
                      ++|+++ +.+.+.+.++..||+|+++++|++|..++  ++  ++++|.. +|   +++.||+||++.+.
T Consensus       214 ~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~  282 (474)
T TIGR02732       214 KGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDV  282 (474)
T ss_pred             cCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCCh
Confidence            999877 77889999999999999999999998743  23  2666654 33   56899999998654

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.87  E-value=3.1e-20  Score=191.44  Aligned_cols=252  Identities=17%  Similarity=0.182  Sum_probs=161.5

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC-c
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN-G   84 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~-~   84 (445)
                      +|+|||+|++||+||++|+++|++|+|+|+++++||++.|++..                   .++.+|.|+|++... .
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~-------------------~g~~~d~G~~~~~~~~~   61 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE-------------------DGDWYETGLHIFFGAYP   61 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC-------------------CCCEEEcCcceeccCCc
Confidence            58999999999999999999999999999999999999998531                   468999999998753 4


Q ss_pred             hhHHHhhhccccCceeeEEecceEEEe--CCeEE--Ecc---CCh---HHHhh-ccccCchhHHHHHHHHHHHHhhhccC
Q 036458           85 GLVRILIHTDVTKYLNFKAVDGSFVYN--KGKIY--KVP---ATD---VEALK-SPLMGLFEKRRARKFFIYVQEYEEDD  153 (445)
Q Consensus        85 ~l~~~l~~~g~~~~l~~~~~~~~~~~~--~g~~~--~vp---~~~---~~~~~-~~l~~~~~k~~~~~f~~~~~~~~~~~  153 (445)
                      .+.+++.++|+.+.+.+......|...  ++...  ..|   ...   .+.+. ...+++.++.++..-+.  .......
T Consensus        62 ~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  139 (453)
T TIGR02731        62 NMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLL--PAIVRGQ  139 (453)
T ss_pred             hHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhH--HHHhcCc
Confidence            778888889987766655433322211  22222  122   210   11121 12344444433221111  1000000


Q ss_pred             ccccccccCCCCCHHHHHHHcCCChhHHH-HHHHHh-hccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCC-
Q 036458          154 PKSHEGLDLNKVTAREIISKYGLEDDTID-FIGHAL-ALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYG-  230 (445)
Q Consensus       154 ~~~~~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG-  230 (445)
                      +. ..  ..+++|+.+|+++.+.++.+.+ ++.... +++..+ ..+.++...+..+..++.  ..+  ++...+..+| 
T Consensus       140 ~~-~~--~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~-p~~~S~~~~~~~l~~~~~--~~~--g~~~~~~~g~~  211 (453)
T TIGR02731       140 KY-VE--EQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFIN-PDELSMTVVLTALNRFLQ--ERH--GSKMAFLDGAP  211 (453)
T ss_pred             cc-hh--hhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHh--cCC--CCeeEeecCCC
Confidence            10 11  2357899999999999998765 443332 333221 112244455555444332  122  3333455555 


Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCe-----EEEcCEEEECCC
Q 036458          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGE-----TAKCKKVVCDPS  286 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~-----~~~ad~VI~~~~  286 (445)
                      ++.+++++.+.++..|++|++|++|++|..++++++++|+. +|+     ++.||.||++.+
T Consensus       212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p  273 (453)
T TIGR02731       212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMP  273 (453)
T ss_pred             hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCC
Confidence            57899999999989999999999999998755677777774 454     789999999864

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02487 zeta-carotene desaturase

Probab=99.86  E-value=2.8e-20  Score=194.12  Aligned_cols=258  Identities=18%  Similarity=0.204  Sum_probs=168.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec-C
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA-N   83 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~-~   83 (445)
                      .+|+|||+|++||++|+.|+++|++|+|+|+++++||++.++...                   +++.+|.|+|+++. .
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~-------------------~g~~~e~G~h~~~~~~  136 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK-------------------NGNHIEMGLHVFFGCY  136 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec-------------------CCcEEecceeEecCCc
Confidence            589999999999999999999999999999999999999998631                   46899999999875 4


Q ss_pred             chhHHHhhhccccCceeeEEecceEEEeCCeEEE----ccCC-h----HHHhhccccCchhHHHHHHHH--H-HHHhhhc
Q 036458           84 GGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYK----VPAT-D----VEALKSPLMGLFEKRRARKFF--I-YVQEYEE  151 (445)
Q Consensus        84 ~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~----vp~~-~----~~~~~~~l~~~~~k~~~~~f~--~-~~~~~~~  151 (445)
                      .++.+++.++|+.+.+.+......|...+|....    +|.. .    ...+....+++.+|.++..-+  . .+...  
T Consensus       137 ~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al--  214 (569)
T PLN02487        137 NNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRAL--  214 (569)
T ss_pred             HHHHHHHHhcCCcccccccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhc--
Confidence            5788899999998766554322223344555422    2221 1    144455667776765442111  0 01110  


Q ss_pred             cCcc--ccccccCCCCCHHHHHHHcCCChhHHHHHHHHhhccc-cCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeC
Q 036458          152 DDPK--SHEGLDLNKVTAREIISKYGLEDDTIDFIGHALALHI-NDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPL  228 (445)
Q Consensus       152 ~~~~--~~~~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~-~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~  228 (445)
                      ..+.  ...+...++.|+.+|+++++.++.+.+.+...+.+.. ..+..+.++..++..+..+.   .+- ..+...||+
T Consensus       215 ~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~---~~~-~~~~l~~~~  290 (569)
T PLN02487        215 VDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA---TKT-EASLLRMLK  290 (569)
T ss_pred             cCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh---hcC-CcceeeecC
Confidence            0000  0011123569999999999888855543333332221 11111223333433332111   111 234568999


Q ss_pred             CCcch-HHHHHHHHHHHcCcEEEeCCcceeEEEcC--CC--cEEEEEe--C--CeEEEcCEEEECCCC
Q 036458          229 YGLGE-LPQAFARLSAVYGGTYMLNKPECKVEFDG--DG--KVIGVTS--E--GETAKCKKVVCDPSY  287 (445)
Q Consensus       229 gG~~~-L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~--~g--~~~~v~~--~--g~~~~ad~VI~~~~~  287 (445)
                      +|+++ |++.+++.++..||+|+++++|++|..+.  ++  ++++|+.  +  ++++.||.||++.+.
T Consensus       291 Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~  358 (569)
T PLN02487        291 GSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDV  358 (569)
T ss_pred             CCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCH
Confidence            99995 99999999999999999999999999852  22  3677765  3  457899999998664

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.78  E-value=1.7e-17  Score=168.95  Aligned_cols=238  Identities=18%  Similarity=0.170  Sum_probs=147.5

Q ss_pred             HHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC-chhHHHhhhcccc
Q 036458           18 ILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN-GGLVRILIHTDVT   96 (445)
Q Consensus        18 ~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~-~~l~~~l~~~g~~   96 (445)
                      +||++|+++|++|+|||+++++||++.|++.++                  -++.+|+|+|++... ..+.+++.++|+.
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g------------------~~~~~d~G~~~~~~~~~~~~~l~~~lgl~   62 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFEDGG------------------LGQTIDNGQHVLLGAYTNLLALLRRIGAE   62 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEeecCC------------------CCcceecCCEEEEcccHHHHHHHHHhCCc
Confidence            489999999999999999999999999998743                  135699999999864 4677888888987


Q ss_pred             CceeeEEecceEEEeCCeEEE-----ccC--Ch-HHHhhccccCchhHHHHHHHHHHHHhhhccCccccccccCCCCCHH
Q 036458           97 KYLNFKAVDGSFVYNKGKIYK-----VPA--TD-VEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAR  168 (445)
Q Consensus        97 ~~l~~~~~~~~~~~~~g~~~~-----vp~--~~-~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~~~~~~~s~~  168 (445)
                      ..+.+......+...++....     +|.  .. ...+....++..++.++.+++..+....  .    .  ..+..|+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~----~--~~~~~s~~  134 (419)
T TIGR03467        63 PRLQGPRLPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTR--F----R--ALDDTTVG  134 (419)
T ss_pred             hhhhcccCCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcC--c----c--ccCCCCHH
Confidence            665432211111122333211     221  10 1122334455556655555443332211  0    1  23568999


Q ss_pred             HHHHHcCCChhHHHHH-HHH-hhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHH-HHHHHHHHHc
Q 036458          169 EIISKYGLEDDTIDFI-GHA-LALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELP-QAFARLSAVY  245 (445)
Q Consensus       169 ~~~~~~~l~~~~~~~i-~~~-~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~-q~l~r~~~~~  245 (445)
                      +|+++++.++.+.+.+ ... .+++..+ ..+.++..++..++.   .+........+.||++|++++. +++++.++..
T Consensus       135 ~~l~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~s~~~~~~~~~~---~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~  210 (419)
T TIGR03467       135 DWLQAAGQSERLIERLWEPLLLSALNTP-PERASAALAAKVLRD---SFLAGRAASDLLLPRVPLSELFPEPARRWLDSR  210 (419)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHH---HHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHc
Confidence            9999988888777643 322 2232211 111233333332221   1111101335789999988866 5588888888


Q ss_pred             CcEEEeCCcceeEEEcCCCcEEEE-EeCCeEEEcCEEEECCC
Q 036458          246 GGTYMLNKPECKVEFDGDGKVIGV-TSEGETAKCKKVVCDPS  286 (445)
Q Consensus       246 Gg~i~l~~~V~~I~~~~~g~~~~v-~~~g~~~~ad~VI~~~~  286 (445)
                      |++|++|++|++|..+ ++++..+ ..+|+++.||.||++.+
T Consensus       211 g~~i~~~~~V~~i~~~-~~~~~~~~~~~g~~~~~d~vi~a~p  251 (419)
T TIGR03467       211 GGEVRLGTRVRSIEAN-AGGIRALVLSGGETLPADAVVLAVP  251 (419)
T ss_pred             CCEEEcCCeeeEEEEc-CCcceEEEecCCccccCCEEEEcCC
Confidence            9999999999999985 4444333 34788899999999865

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PLN02268 probable polyamine oxidase

Probab=99.77  E-value=7.4e-18  Score=172.93  Aligned_cols=225  Identities=16%  Similarity=0.182  Sum_probs=127.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC-
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN-   83 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~-   83 (445)
                      .+|||||||++||+||+.|.++|++|+|||+++++||++.|.+.                    .++.+|+|++|++.. 
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~--------------------~g~~~d~G~~~i~~~~   60 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYS--------------------FGFPVDMGASWLHGVC   60 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCc--------------------CCcccCCCCeeEeccC
Confidence            37999999999999999999999999999999999999998654                    468999999999742 


Q ss_pred             --chhHHHhhhccccCceeeEEe-cceEEEeCC---------eEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhc
Q 036458           84 --GGLVRILIHTDVTKYLNFKAV-DGSFVYNKG---------KIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEE  151 (445)
Q Consensus        84 --~~l~~~l~~~g~~~~l~~~~~-~~~~~~~~g---------~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~  151 (445)
                        .++.+++.++|+..+   ... +..+++.++         ....+|.+....+         ...+.+++..+.... 
T Consensus        61 ~~~~~~~l~~~lgl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-  127 (435)
T PLN02268         61 NENPLAPLIGRLGLPLY---RTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKV---------GETFERILEETEKVR-  127 (435)
T ss_pred             CCchHHHHHHHhCCceE---eccCCccccccccccccceecCCCCCCCHHHHHHH---------HHHHHHHHHHHHHHH-
Confidence              357778888887421   111 112222221         1112221100000         011122222222111 


Q ss_pred             cCccccccccCCCCCHHHHHHHcC----------CChhHHHHH-HHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccC
Q 036458          152 DDPKSHEGLDLNKVTAREIISKYG----------LEDDTIDFI-GHALALHINDSYLEEPAMDFVKRIKLYAESLARFQG  220 (445)
Q Consensus       152 ~~~~~~~~~~~~~~s~~~~~~~~~----------l~~~~~~~i-~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g  220 (445)
                        .   .  ..++.|+.++++.+.          +.+...++. ......+.. +..+.++..       + .....+.|
T Consensus       128 --~---~--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ls~~~-------~-~~~~~~~g  191 (435)
T PLN02268        128 --D---E--HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAA-DADTISLKS-------W-DQEELLEG  191 (435)
T ss_pred             --h---c--cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCC-ChHhCchhh-------c-CCccccCC
Confidence              0   0  124578888775432          122222211 110111111 000001110       0 00001113


Q ss_pred             CCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 036458          221 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPS  286 (445)
Q Consensus       221 ~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~  286 (445)
                      ..  .+..+|++.|++++++     |..|++|++|++|..+ ++.+.....+|+++.||+||++.+
T Consensus       192 ~~--~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~-~~~v~v~~~~g~~~~ad~VIva~P  249 (435)
T PLN02268        192 GH--GLMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR-YNGVKVTVEDGTTFVADAAIIAVP  249 (435)
T ss_pred             Cc--eeecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc-CCcEEEEECCCcEEEcCEEEEecC
Confidence            22  3567899999988864     5579999999999985 444443335778899999999754

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=99.76  E-value=6.4e-17  Score=157.16  Aligned_cols=65  Identities=25%  Similarity=0.389  Sum_probs=60.0

Q ss_pred             ceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCC
Q 036458          223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYL  288 (445)
Q Consensus       223 ~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~  288 (445)
                      .+.||.||+|+++.++++.++.+|++|.+++.|.+|..| +|+++||+ .+|+++.++.||+|++.|
T Consensus       255 ~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~~  320 (561)
T KOG4254|consen  255 GWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATPW  320 (561)
T ss_pred             cccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCchH
Confidence            456999999999999999999999999999999999995 79999998 599999999999998765

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.76  E-value=5.1e-17  Score=166.97  Aligned_cols=240  Identities=14%  Similarity=0.205  Sum_probs=152.1

Q ss_pred             cccEEEECCChhHHHHHHHhhhC----CCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccce
Q 036458            4 DYDVIVLGTGLKECILSGVLSVD----GLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKF   79 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~   79 (445)
                      +.+|+|||||++||+||++|++.    |++|+|||+++++||++.++....                  .||.+|.||.+
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~------------------~Gy~~~~G~~~   83 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPE------------------KGYVARGGREM   83 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCccccc------------------CCEEEECCCCc
Confidence            46899999999999999999996    689999999999999999876533                  68999999986


Q ss_pred             eecCchhHHHhhhc------c---ccCceeeEEecceE-----EEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHH
Q 036458           80 MMANGGLVRILIHT------D---VTKYLNFKAVDGSF-----VYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIY  145 (445)
Q Consensus        80 l~~~~~l~~~l~~~------g---~~~~l~~~~~~~~~-----~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~  145 (445)
                      ......+.+++.+.      |   ..++..+.+.++.|     ++.+|....          ...+++-.|. .+.+++.
T Consensus        84 ~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d----------~~~~~L~~k~-r~~Ll~l  152 (576)
T PRK13977         84 ENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILD----------TDKFGLSKKD-RKELLKL  152 (576)
T ss_pred             cchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEE----------CcCCCCCHHH-HHHHHHH
Confidence            44445677777553      2   22555665555543     122232222          2233433332 2222332


Q ss_pred             HHhhhccCccccccccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceE
Q 036458          146 VQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYI  225 (445)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~  225 (445)
                      +..     +  .+  .+++.++.||++...+....-.   .+.++..-...  .++.+....+++|+.-+....-.+...
T Consensus       153 ~l~-----~--e~--~Ld~~tI~d~f~~~Ff~t~Fw~---~w~t~FaF~~w--hSA~E~rry~~rf~~~~~~l~~~s~l~  218 (576)
T PRK13977        153 LLT-----P--EE--KLDDKTIEDWFSPEFFETNFWY---YWRTMFAFEKW--HSALEMRRYMHRFIHHIGGLPDLSGLK  218 (576)
T ss_pred             hcc-----C--HH--HhCCcCHHHHHhhcCchhHHHH---HHHHHHCCchh--hHHHHHHHHHHHHHHhhccCCcccccc
Confidence            221     1  11  2467899999987555443332   22233321111  356666555666654443331133444


Q ss_pred             EeCCC-cchHHHHHHHHHHHcCcEEEeCCcceeEEEc-CC--CcEEEEEe--CCe-----EEEcCEEEECCC
Q 036458          226 YPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFD-GD--GKVIGVTS--EGE-----TAKCKKVVCDPS  286 (445)
Q Consensus       226 ~p~gG-~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~-~~--g~~~~v~~--~g~-----~~~ad~VI~~~~  286 (445)
                      +.+|- ...|.+.|.+.++.+|++++++++|++|..+ ++  +++++|..  +|+     ...+|.||++.+
T Consensus       219 ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnG  290 (576)
T PRK13977        219 FTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNG  290 (576)
T ss_pred             CCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCC
Confidence            55555 4679999999999999999999999999984 23  56888864  332     346888888643

>PLN02568 polyamine oxidase

Probab=99.73  E-value=4.2e-16  Score=162.68  Aligned_cols=78  Identities=9%  Similarity=0.226  Sum_probs=68.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCC-----CeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEec
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDG-----LKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDM   75 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G-----~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDl   75 (445)
                      |.+.+||||||||++||+||..|+++|     ++|+|||+++++||+++|++.                    .+|.+|+
T Consensus         2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~--------------------~g~~~d~   61 (539)
T PLN02568          2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEF--------------------GGERIEM   61 (539)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEe--------------------CCeEEec
Confidence            445689999999999999999999988     999999999999999999887                    4699999


Q ss_pred             ccceeec--CchhHHHhhhccccCc
Q 036458           76 IPKFMMA--NGGLVRILIHTDVTKY   98 (445)
Q Consensus        76 gp~~l~~--~~~l~~~l~~~g~~~~   98 (445)
                      |+++++.  ..++.+++.++|+.+.
T Consensus        62 G~~~~~g~~~~~~~~l~~~~g~~~~   86 (539)
T PLN02568         62 GATWIHGIGGSPVYKIAQEAGSLES   86 (539)
T ss_pred             CCceeCCCCCCHHHHHHHHhCCccc
Confidence            9999984  4567788888888543

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.70  E-value=1.5e-15  Score=143.46  Aligned_cols=250  Identities=16%  Similarity=0.188  Sum_probs=149.9

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec-
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA-   82 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~-   82 (445)
                      ..+|+|||+|++||+||++|++. ++|+++|++++.||+++|...+-                -..++-+|.|-.++.. 
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~----------------d~~g~~vDtGfiVyn~~   70 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT----------------DGGGVFVDTGFIVYNER   70 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc----------------cCCceeecceeEEecCC
Confidence            36899999999999999999987 89999999999999999986321                1156889999887764 


Q ss_pred             -CchhHHHhhhccccCceeeEEecceEEEeCCeEEEccC--ChHHHhh--ccccCchhHHHHHHHHHHHHhhhccCcccc
Q 036458           83 -NGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPA--TDVEALK--SPLMGLFEKRRARKFFIYVQEYEEDDPKSH  157 (445)
Q Consensus        83 -~~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~--~~~~~~~--~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~  157 (445)
                       ...+.+++...|+...-.+....-  -+.+|.+. +-.  .....|.  ..++.    .++-+++..+..+........
T Consensus        71 tYpnl~~Lf~~iGv~t~as~Msf~v--~~d~gglE-y~g~tgl~~L~aqk~n~l~----pRf~~mlaeiLrf~r~~~~~~  143 (447)
T COG2907          71 TYPNLTRLFKTIGVDTKASFMSFSV--SLDMGGLE-YSGLTGLAGLLAQKRNLLR----PRFPCMLAEILRFYRSDLAPS  143 (447)
T ss_pred             CcchHHHHHHHcCCCCcccceeEEE--EecCCcee-eccCCCccchhhccccccc----hhHHHHHHHHHHHhhhhccch
Confidence             457888998899854333322111  12223221 111  0011121  11211    234444444444433111111


Q ss_pred             ccccCCCCCHHHHHHHcCCChhHHHHHHHHh--hcccc--CCCCCCcHHHHHHHHHHHHHHhhh-ccCCCceEEe-CCCc
Q 036458          158 EGLDLNKVTAREIISKYGLEDDTIDFIGHAL--ALHIN--DSYLEEPAMDFVKRIKLYAESLAR-FQGGSPYIYP-LYGL  231 (445)
Q Consensus       158 ~~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~--~l~~~--~~~~~~~~~~~l~~i~~~~~s~~~-~~g~s~~~~p-~gG~  231 (445)
                      ........|+.+|+++.++++...+.....+  +.++.  .+...-|+...+    .|....+. +.-+.|.|+. .||+
T Consensus       144 d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~----~f~~nhGll~l~~rp~wrtV~ggS  219 (447)
T COG2907         144 DNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFL----VFTDNHGLLYLPKRPTWRTVAGGS  219 (447)
T ss_pred             hhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHH----HHHhccCceecCCCCceeEcccch
Confidence            1112245899999999999988775332322  23321  000011333322    23332222 1135666654 5677


Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDP  285 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~  285 (445)
                      ..-.|.+.   +..++++.++++|.+|.+-.+|+ +.+..+|++-.+|.||.+.
T Consensus       220 ~~yvq~la---a~~~~~i~t~~~V~~l~rlPdGv-~l~~~~G~s~rFD~vViAt  269 (447)
T COG2907         220 RAYVQRLA---ADIRGRIETRTPVCRLRRLPDGV-VLVNADGESRRFDAVVIAT  269 (447)
T ss_pred             HHHHHHHh---ccccceeecCCceeeeeeCCCce-EEecCCCCccccceeeeec
Confidence            77777554   66788999999999999866663 3344679988899888754

>PLN02529 lysine-specific histone demethylase 1

Probab=99.69  E-value=1.6e-15  Score=161.81  Aligned_cols=258  Identities=14%  Similarity=0.190  Sum_probs=148.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN   83 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~   83 (445)
                      ..||+|||+|++||+||..|+++|++|+++|+++++||++.|.....                ....+.+|+|++|++..
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~----------------~g~~~~~DlGaswi~g~  223 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR----------------KGQFAAVDLGGSVITGI  223 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC----------------CCCceEEecCCeecccc
Confidence            57999999999999999999999999999999999999999987631                00225899999999853


Q ss_pred             -c-hhHHHhhhccccCceeeEEecce--EEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccccc
Q 036458           84 -G-GLVRILIHTDVTKYLNFKAVDGS--FVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEG  159 (445)
Q Consensus        84 -~-~l~~~l~~~g~~~~l~~~~~~~~--~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~  159 (445)
                       + ++..+..+.|+.-.    .+...  +.+.+|.......+  +.+        ++ .+.+++..+.++......    
T Consensus       224 ~~npl~~la~~lgl~~~----~~~~~~~~~~~~G~~v~~~~~--~~~--------~~-~~~~~l~~~~~l~~~~~~----  284 (738)
T PLN02529        224 HANPLGVLARQLSIPLH----KVRDNCPLYKPDGALVDKEID--SNI--------EF-IFNKLLDKVTELRQIMGG----  284 (738)
T ss_pred             ccchHHHHHHHhCCCcc----ccCCCceEEeCCCcCcchhhh--hhH--------HH-HHHHHHHHHHHHHHhccc----
Confidence             2 45556666675321    12221  22335544311111  000        00 111222222211111010    


Q ss_pred             ccCCCCCHHHHHHHcC------CChhHHHHHHHHh-hccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcc
Q 036458          160 LDLNKVTAREIISKYG------LEDDTIDFIGHAL-ALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLG  232 (445)
Q Consensus       160 ~~~~~~s~~~~~~~~~------l~~~~~~~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~  232 (445)
                       ..++.|+.+++++..      +++..++++.... .+....  -.+  ...+. +..+.. -..|..+.......+|++
T Consensus       285 -~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~--~~~--~s~LS-l~~~~~-~~~~e~~G~~~~i~GG~~  357 (738)
T PLN02529        285 -FANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYAN--AGC--LSDLS-AAYWDQ-DDPYEMGGDHCFLAGGNW  357 (738)
T ss_pred             -CccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceec--CCC--hHHhh-hhHhhh-ccccccCCceEEECCcHH
Confidence             124578999886543      4555454443222 221110  001  11111 111111 111212233567899999


Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCC----------CCc---c-c---cc-
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSY----------LPD---K-V---QK-  294 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~----------~p~---~-~---~~-  294 (445)
                      .|+++|++     +..|+||++|++|..++++ + .|+++++++.||+||++.+.          .|.   . .   +. 
T Consensus       358 ~Li~aLA~-----~L~IrLnt~V~~I~~~~dG-V-tV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL  430 (738)
T PLN02529        358 RLINALCE-----GVPIFYGKTVDTIKYGNDG-V-EVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRL  430 (738)
T ss_pred             HHHHHHHh-----cCCEEcCCceeEEEEcCCe-E-EEEECCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcC
Confidence            99998875     3359999999999985333 3 45567788999999998542          121   1 0   11 


Q ss_pred             -cceEEEEEEeeccCCC
Q 036458          295 -VGKVARAICIMNHPIP  310 (445)
Q Consensus       295 -~~~~~r~i~i~~~~i~  310 (445)
                       .+.+.+.++.+++++-
T Consensus       431 ~yG~v~KV~L~F~~~FW  447 (738)
T PLN02529        431 GFGLLNKVAMVFPSVFW  447 (738)
T ss_pred             CCceeEEEEEEeCCccc
Confidence             2567777888888753

>PLN02676 polyamine oxidase

Probab=99.69  E-value=1.2e-15  Score=158.05  Aligned_cols=263  Identities=15%  Similarity=0.161  Sum_probs=143.5

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceee
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMM   81 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~   81 (445)
                      ..+||||||+|++||+||..|+++|. +|+|+|+++++||++.+.+.                    .++.+|+|++|+.
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~--------------------~g~~~d~g~~~~~   84 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANF--------------------AGVSVELGANWVE   84 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecC--------------------CCeEEecCCEEEE
Confidence            46899999999999999999999998 69999999999999998776                    4689999999996


Q ss_pred             c-----CchhHHHhhhccccCcee-eEEecceEEE-eCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCc
Q 036458           82 A-----NGGLVRILIHTDVTKYLN-FKAVDGSFVY-NKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDP  154 (445)
Q Consensus        82 ~-----~~~l~~~l~~~g~~~~l~-~~~~~~~~~~-~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~  154 (445)
                      .     ..++.+++.+.|+..... +.. ....+| .+|+.+  |.   +.. ..+.     ..+.++..++..+.....
T Consensus        85 ~~~~~~~~~~~~l~~~~g~~~~~~~~~~-~~~~~~~~~g~~~--~~---~~~-~~~~-----~~~~~~~~~~~~~~~~~~  152 (487)
T PLN02676         85 GVGGPESNPIWELANKLKLRTFYSDFDN-LSSNIYKQDGGLY--PK---KVV-QKSM-----KVADASDEFGENLSISLS  152 (487)
T ss_pred             cccCcccChHHHHHHhcCCceeecCccc-cceeEECCCCCCC--CH---HHH-HHHH-----HHHHHHHHHHHHHHHhhc
Confidence            3     346777887788753211 111 012223 244433  21   110 0000     011122222222221100


Q ss_pred             cccccccCCCCCHHH--HHHHcC-CChh--HHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEe-C
Q 036458          155 KSHEGLDLNKVTARE--IISKYG-LEDD--TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYP-L  228 (445)
Q Consensus       155 ~~~~~~~~~~~s~~~--~~~~~~-l~~~--~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p-~  228 (445)
                          ....++.++.+  .+.... ....  ..+++.. ......+ ....++...+.     ......+ |...+... +
T Consensus       153 ----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~S~~~~~~-----~~~~~~~-g~~~~~~~~~  220 (487)
T PLN02676        153 ----AKKAVDISILTAQRLFGQVPKTPLEMVIDYYNY-DYEFAEP-PRVTSLKNTEP-----NPTFVDF-GEDEYFVADP  220 (487)
T ss_pred             ----ccCCCCccHHHHHHHHhhCCCCHHHHHHHHHhc-cceeccC-ccccchhhcCc-----ccccccC-CCceEEeecC
Confidence                01123455522  333221 1111  1111110 0001111 00112211110     0001112 33333332 6


Q ss_pred             CCcchHHHHHHHHHHHc------CcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC-------------C
Q 036458          229 YGLGELPQAFARLSAVY------GGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL-------------P  289 (445)
Q Consensus       229 gG~~~L~q~l~r~~~~~------Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~-------------p  289 (445)
                      +|++.|+++|++.+...      ++.|+||++|++|..+ ++.+...+.+|++++||+||++.+.-             |
T Consensus       221 ~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~-~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP  299 (487)
T PLN02676        221 RGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS-KNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLP  299 (487)
T ss_pred             CCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc-CCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCC
Confidence            89999999998755222      3679999999999985 44444334578899999999986521             2


Q ss_pred             ccc----c--ccceEEEEEEeeccCCC
Q 036458          290 DKV----Q--KVGKVARAICIMNHPIP  310 (445)
Q Consensus       290 ~~~----~--~~~~~~r~i~i~~~~i~  310 (445)
                      ...    +  ..+.+.|.++..++|+-
T Consensus       300 ~~k~~ai~~l~~g~~~Kv~l~f~~~FW  326 (487)
T PLN02676        300 DWKIEAIYQFDMAVYTKIFLKFPYKFW  326 (487)
T ss_pred             HHHHHHHHhCCceeeEEEEEEeCCCCC
Confidence            111    1  13567777777788764

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.69  E-value=2.2e-15  Score=161.48  Aligned_cols=258  Identities=15%  Similarity=0.189  Sum_probs=148.1

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN   83 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~   83 (445)
                      ..+|+|||||++||+||..|++.|++|+|+|+++++||++.+++..+.                .-.+.+|+|++|++..
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~----------------~~~~~~d~Gas~i~g~  301 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGD----------------GVVAAADLGGSVLTGI  301 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCC----------------CcceeccCCceeecCC
Confidence            579999999999999999999999999999999999999999887430                0125799999999753


Q ss_pred             -c-hhHHHhhhccccCceeeEEecc--eEEEeCCeEEE--ccCChHHHhhccccCchhHHHHHHHHHHHHhhhcc-Cccc
Q 036458           84 -G-GLVRILIHTDVTKYLNFKAVDG--SFVYNKGKIYK--VPATDVEALKSPLMGLFEKRRARKFFIYVQEYEED-DPKS  156 (445)
Q Consensus        84 -~-~l~~~l~~~g~~~~l~~~~~~~--~~~~~~g~~~~--vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~-~~~~  156 (445)
                       + ++..+..++|+..    ..+..  .+++.+|+...  ++.. .           + ..+.+++..+.++... .+. 
T Consensus       302 ~~npl~~l~~~lgl~~----~~~~~~~~~~~~dG~~~~~~~~~~-v-----------~-~~f~~lL~~~~klr~~~~~~-  363 (808)
T PLN02328        302 NGNPLGVLARQLGLPL----HKVRDICPLYLPDGKAVDAEIDSK-I-----------E-ASFNKLLDRVCKLRQAMIEE-  363 (808)
T ss_pred             CccHHHHHHHHcCCce----EecCCCceEEeCCCcCcchhhhhh-H-----------H-HHHHHHHHHHHHHHHhhhhc-
Confidence             3 4556677788642    22222  23445665432  1211 1           1 1122233222222110 010 


Q ss_pred             cccccCCCCCHHHHHHHc------CCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCC
Q 036458          157 HEGLDLNKVTAREIISKY------GLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYG  230 (445)
Q Consensus       157 ~~~~~~~~~s~~~~~~~~------~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG  230 (445)
                      ..   ..+.|+.++++++      ..++..+..+...++...   +........+.. ..+. .-..|.....+.+..+|
T Consensus       364 ~~---~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE---~~~gs~ls~LSl-~~w~-qd~~~e~~G~~~~v~GG  435 (808)
T PLN02328        364 VK---SVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLE---YANASLMSNLSM-AYWD-QDDPYEMGGDHCFIPGG  435 (808)
T ss_pred             cc---ccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHh---ccchhhHHHHHh-hhhh-ccccccCCCeEEEECCc
Confidence            01   1236888877643      233443333322221110   100011111110 1111 00112112235567899


Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC----------C---ccc----c
Q 036458          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL----------P---DKV----Q  293 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~----------p---~~~----~  293 (445)
                      ++.|+++|++.+     .|++|++|++|..+.++ + .|.++|++++||+||++.+.-          |   ...    +
T Consensus       436 ~~~Li~aLa~~L-----~I~ln~~V~~I~~~~dg-V-~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~  508 (808)
T PLN02328        436 NDTFVRELAKDL-----PIFYERTVESIRYGVDG-V-IVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQ  508 (808)
T ss_pred             HHHHHHHHHhhC-----CcccCCeeEEEEEcCCe-E-EEEeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHH
Confidence            999999998754     28999999999985333 3 345678899999999985421          1   110    1


Q ss_pred             c--cceEEEEEEeeccCCC
Q 036458          294 K--VGKVARAICIMNHPIP  310 (445)
Q Consensus       294 ~--~~~~~r~i~i~~~~i~  310 (445)
                      .  .+.+.+.++.+++++-
T Consensus       509 ~l~yG~~~KV~L~F~~~FW  527 (808)
T PLN02328        509 RLGYGLLNKVALLFPYNFW  527 (808)
T ss_pred             cCCCcceEEEEEEeCCccc
Confidence            1  3567777777777754

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.67  E-value=9.1e-16  Score=151.08  Aligned_cols=242  Identities=20%  Similarity=0.233  Sum_probs=126.8

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA   82 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~   82 (445)
                      ...||||||+|++||++|+.|+++|++|+|||+++++|||+.+.+..                    +=++|++.+++..
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~--------------------~~~~d~gG~~i~p   65 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAG--------------------GEYTDLGGQYINP   65 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEecc--------------------ceeeccCCcccCc
Confidence            45899999999999999999999999999999999999999998862                    3456777666543


Q ss_pred             -CchhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHH-HHHHHHHHHhhhccCcc-cccc
Q 036458           83 -NGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRR-ARKFFIYVQEYEEDDPK-SHEG  159 (445)
Q Consensus        83 -~~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~-~~~f~~~~~~~~~~~~~-~~~~  159 (445)
                       ...++....+.|+... +|.......+-..+.....|.-..+..       .+.+. ...|.......++.++. +...
T Consensus        66 ~~~~~l~~~k~~gv~~~-~fi~~g~~~~~~~~~~~~~p~~~~~~~-------~d~~~~~~~~~~~a~~~~~~~~~~t~~~  137 (450)
T COG1231          66 THDALLAYAKEFGVPLE-PFIRDGDNVIGYVGSSKSTPKRSLTAA-------ADVRGLVAELEAKARSAGELDPGLTPED  137 (450)
T ss_pred             cchhhhhhHHhcCCCCC-ceeccCcccccccccccccchhccchh-------hhhcchhhhhhhhhhcccccCcccCcch
Confidence             3456666667777532 232211111100010010111000000       01110 11111111111111111 0011


Q ss_pred             ccCCCCCHHHHHHH---cCCChhHHHHHHHHhhccc--cCCCCCCcHHHHHHHHHHHHHHhhhccC---CCceEEeCCCc
Q 036458          160 LDLNKVTAREIISK---YGLEDDTIDFIGHALALHI--NDSYLEEPAMDFVKRIKLYAESLARFQG---GSPYIYPLYGL  231 (445)
Q Consensus       160 ~~~~~~s~~~~~~~---~~l~~~~~~~i~~~~~l~~--~~~~~~~~~~~~l~~i~~~~~s~~~~~g---~s~~~~p~gG~  231 (445)
                      ...+.+++.+| +.   ++++..    ++.-+....  ..+++   ....+.. .+....+.++.+   ....+++.|||
T Consensus       138 ~e~~~~~~~~W-~~~~~~~~~~~----~~a~~~~g~~~~~~~~---~~~d~~~-~~~~~~~~~~~~~e~~~~~~~~~GGm  208 (450)
T COG1231         138 RELDLESLAAW-KTSSLRGLSRD----PGARVSPGPIEPGDVS---LLHDALP-LRSASVVDRGIGGEIRTQMLQRLGGM  208 (450)
T ss_pred             hhhhhHHHHhh-hhccccccccC----ccceeccCCCCccccc---chhhhhh-hhhhhhccccccccccchhhccCccH
Confidence            12233555666 10   111110    000011110  11111   0111111 111222222211   23445777999


Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCC-eEEEcCEEEECCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEG-ETAKCKKVVCDPS  286 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g-~~~~ad~VI~~~~  286 (445)
                      +.|+++|++   ..|..|.++++|.+|..+++|  +.|++.. +++++|+||++.+
T Consensus       209 d~la~Afa~---ql~~~I~~~~~V~rI~q~~~g--V~Vt~~~~~~~~ad~~i~tiP  259 (450)
T COG1231         209 DQLAEAFAK---QLGTRILLNEPVRRIDQDGDG--VTVTADDVGQYVADYVLVTIP  259 (450)
T ss_pred             HHHHHHHHH---HhhceEEecCceeeEEEcCCe--EEEEeCCcceEEecEEEEecC
Confidence            999999985   567899999999999986444  4466554 8899999999865

>PLN03000 amine oxidase

Probab=99.64  E-value=1.5e-14  Score=154.96  Aligned_cols=260  Identities=13%  Similarity=0.163  Sum_probs=144.2

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN   83 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~   83 (445)
                      ..+|+|||+|++||+||..|++.|++|+|+|+++++||++.|.+..+                ...++.+|+|++|++..
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g----------------~~~~~~~DlGas~i~g~  247 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEA----------------NRVGAAADLGGSVLTGT  247 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccC----------------CCCceEeecCCeEEeCC
Confidence            57999999999999999999999999999999999999999988643                11358999999999864


Q ss_pred             -c-hhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccccccc
Q 036458           84 -G-GLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLD  161 (445)
Q Consensus        84 -~-~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~~~  161 (445)
                       + ++..++.++|+.-+ .+.. ...+++.+|+..  |.+....+        +. .+..++..+..+......  .   
T Consensus       248 ~~npl~~L~~qlgl~l~-~~~~-~~~ly~~~Gk~v--~~~~~~~v--------e~-~fn~lLd~~~~lr~l~~~--~---  309 (881)
T PLN03000        248 LGNPLGIIARQLGSSLY-KVRD-KCPLYRVDGKPV--DPDVDLKV--------EV-AFNQLLDKASKLRQLMGD--V---  309 (881)
T ss_pred             CccHHHHHHHHcCCcee-ecCC-CCeEEEeCCcCC--chhhhhhH--------HH-HHHHHHHHHHHHHHHhcc--c---
Confidence             3 34455667776421 1111 222345566543  32211000        00 111122111111110000  0   


Q ss_pred             CCCCCHHHHHHH----c--CCChhHHHHHH-HHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchH
Q 036458          162 LNKVTAREIISK----Y--GLEDDTIDFIG-HALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGEL  234 (445)
Q Consensus       162 ~~~~s~~~~~~~----~--~l~~~~~~~i~-~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L  234 (445)
                      ..+.|+.++++.    .  .+.++.+..+. +...+...    .......+. + .++.....|..........+|++.|
T Consensus       310 ~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~----~as~ls~LS-l-~~wdqd~~~e~~G~~~~v~GG~~~L  383 (881)
T PLN03000        310 SMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYA----NAGLVSKLS-L-AFWDQDDPYDMGGDHCFLPGGNGRL  383 (881)
T ss_pred             CcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhcc----cccCHHHHH-H-HHhhhcccccCCCceEEeCCCHHHH
Confidence            012444443321    1  22332222221 11112111    001111111 0 1111111121122345578999999


Q ss_pred             HHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCC----------CC---ccc----c--cc
Q 036458          235 PQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSY----------LP---DKV----Q--KV  295 (445)
Q Consensus       235 ~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~----------~p---~~~----~--~~  295 (445)
                      +++|++.+     .|+++++|++|..+ ++.+ .|++++++++||+||++.+.          .|   ...    .  ..
T Consensus       384 ieaLa~~L-----~I~Ln~~Vt~I~~~-~dgV-~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~  456 (881)
T PLN03000        384 VQALAENV-----PILYEKTVQTIRYG-SNGV-KVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGF  456 (881)
T ss_pred             HHHHHhhC-----CcccCCcEEEEEEC-CCeE-EEEECCcEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCC
Confidence            99998754     38999999999985 3333 35566678999999998542          12   111    1  13


Q ss_pred             ceEEEEEEeeccCCC
Q 036458          296 GKVARAICIMNHPIP  310 (445)
Q Consensus       296 ~~~~r~i~i~~~~i~  310 (445)
                      +.+.+.++.+++++-
T Consensus       457 G~l~KViL~Fd~~FW  471 (881)
T PLN03000        457 GLLNKVAMLFPYVFW  471 (881)
T ss_pred             cceEEEEEEeCCccc
Confidence            567888888888764

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.64  E-value=2.9e-14  Score=138.35  Aligned_cols=233  Identities=17%  Similarity=0.160  Sum_probs=147.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEE--EEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceee
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVL--HMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMM   81 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~Vl--vlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~   81 (445)
                      ..+|+|+|+|++||++|++|++.+-+|+  ++|+.+|+||..+| ...+                  ++|-||.||..+.
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS-~r~~------------------ng~ifE~GPrtlr   71 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS-DRMQ------------------NGFIFEEGPRTLR   71 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee-ccCC------------------CceeeccCCCccC
Confidence            3589999999999999999999997764  49999999999999 3322                  6899999999997


Q ss_pred             cCch----hHHHhhhccccCceeeEEec-----ceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhcc
Q 036458           82 ANGG----LVRILIHTDVTKYLNFKAVD-----GSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEED  152 (445)
Q Consensus        82 ~~~~----l~~~l~~~g~~~~l~~~~~~-----~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~  152 (445)
                      ..++    .++++.++|+.+.+.-.+.+     ..|+|..|++..+|++........+.++ -|..+..|+....+-...
T Consensus        72 pag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~-~k~L~~a~l~e~fr~~~~  150 (491)
T KOG1276|consen   72 PAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPF-GKPLLEAFLRELFRKKVS  150 (491)
T ss_pred             cCCcchhHHHHHHHHcCccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcc-cchhHHHHHhhhccccCC
Confidence            6554    78888899997644322221     2467889999999988554333333333 343444444332211101


Q ss_pred             CccccccccCCCCCHHHHHHHcCCChhHHHHHHHHh--hccccCCCCCCcHHHHHHHHHHHHHHh---------hhcc--
Q 036458          153 DPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGHAL--ALHINDSYLEEPAMDFVKRIKLYAESL---------ARFQ--  219 (445)
Q Consensus       153 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~--~l~~~~~~~~~~~~~~l~~i~~~~~s~---------~~~~--  219 (445)
                      .       ...++|+.+|+++. +.+++.+++..++  ..+..| .-+-+...+|..+...-...         +++.  
T Consensus       151 ~-------~~~dESV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD-~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~  221 (491)
T KOG1276|consen  151 D-------PSADESVESFARRR-FGKEVADRLISPFIRGIYAGD-PSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARK  221 (491)
T ss_pred             C-------CCccccHHHHHHHh-hhHHHHHHHHHHHhCccccCC-hHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Confidence            1       22458999998642 4477766543332  233322 11223444444332211111         1110  


Q ss_pred             ---------------CCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCc
Q 036458          220 ---------------GGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGK  265 (445)
Q Consensus       220 ---------------g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~  265 (445)
                                     +.-+.+-.++|+..+|++++..+...+..+.+..++..+.....|+
T Consensus       222 ~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~  282 (491)
T KOG1276|consen  222 RTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGN  282 (491)
T ss_pred             cCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCC
Confidence                           0111133477899999999999888888889999998887644443

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.62  E-value=4.8e-15  Score=152.37  Aligned_cols=75  Identities=21%  Similarity=0.263  Sum_probs=62.6

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCe-EEecccceeec
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEY-NVDMIPKFMMA   82 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~iDlgp~~l~~   82 (445)
                      ..+|||||||++||+||..|...|++|+|||+++++|||+.|++...                    + .+|+|.+++..
T Consensus        15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~--------------------~~~vd~Gas~~~g   74 (501)
T KOG0029|consen   15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEG--------------------GDHVDLGASVLTG   74 (501)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCC--------------------CCeeecCCceecC
Confidence            57999999999999999999999999999999999999999998732                    3 59999999985


Q ss_pred             C-c-hhHHHhhhccccCc
Q 036458           83 N-G-GLVRILIHTDVTKY   98 (445)
Q Consensus        83 ~-~-~l~~~l~~~g~~~~   98 (445)
                      . + ++.-+..++|+..+
T Consensus        75 ~~~npl~~l~~qlgl~~~   92 (501)
T KOG0029|consen   75 VYNNPLALLSKQLGLELY   92 (501)
T ss_pred             cCccHHHHHHHHhCcccc
Confidence            3 3 44444455776543

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.55  E-value=2.1e-14  Score=145.83  Aligned_cols=74  Identities=9%  Similarity=0.151  Sum_probs=58.8

Q ss_pred             hhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec-CchhHHHhhh
Q 036458           14 LKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA-NGGLVRILIH   92 (445)
Q Consensus        14 l~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~-~~~l~~~l~~   92 (445)
                      |+||+||++|+++|++|+|||+++++||++.|++.+.                  .+|.+|+|++++.. ...+.+++.+
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~------------------~g~~~e~G~~~~~~~~~~~~~~~~~   62 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDN------------------PGFTFELGAHRFFGMYPNLLNLIDE   62 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETT------------------TTEEEESSS-EEETTSHHHHHHHHH
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCc------------------cceeecCCcccccccchhhHHHHHH
Confidence            6999999999999999999999999999999999841                  26999999999985 4456777777


Q ss_pred             ccccCceeeEEec
Q 036458           93 TDVTKYLNFKAVD  105 (445)
Q Consensus        93 ~g~~~~l~~~~~~  105 (445)
                      +++...++.....
T Consensus        63 l~~~~~~~~~~~~   75 (450)
T PF01593_consen   63 LGLELSLETFPFP   75 (450)
T ss_dssp             HTHHTTEEEEEES
T ss_pred             hhhcccccccccc
Confidence            7776555554443

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.55  E-value=3.1e-14  Score=142.82  Aligned_cols=240  Identities=19%  Similarity=0.229  Sum_probs=140.7

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec-Cc
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA-NG   84 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~-~~   84 (445)
                      .|+|+|||++||+||+.|+.+|++|+++|+++++||.++||+..                   .|-+.+.|-|+++. ..
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~-------------------dg~~~E~glh~f~~~Y~   62 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDS-------------------DGNHVEHGLHVFFGCYY   62 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecC-------------------CCCeeeeeeEEechhHH
Confidence            59999999999999999999999999999999999999999984                   36778899998875 56


Q ss_pred             hhHHHhhhccccCceeeEEecceEEEe---CCeEE--Ec-----cCCh-HHHhhccccCchhHHHHHHHHHHHHhhhccC
Q 036458           85 GLVRILIHTDVTKYLNFKAVDGSFVYN---KGKIY--KV-----PATD-VEALKSPLMGLFEKRRARKFFIYVQEYEEDD  153 (445)
Q Consensus        85 ~l~~~l~~~g~~~~l~~~~~~~~~~~~---~g~~~--~v-----p~~~-~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~  153 (445)
                      +++++|.+++....+.++.....|+-.   .|.+-  ..     |... .+.+..+.+...+   ..+|+--+.......
T Consensus        63 n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~---~~~~~~~l~~~~~g~  139 (485)
T COG3349          63 NLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRRE---KIRFVLRLGDAPIGA  139 (485)
T ss_pred             HHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHH---HhHHhhccccccchh
Confidence            899999998887555555433333211   12211  11     1111 1222222222222   233322111110000


Q ss_pred             ccccccccCCCCCHHHHHHHcCCChhHHH--HHHHHhhccc-cCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCC
Q 036458          154 PKSHEGLDLNKVTAREIISKYGLEDDTID--FIGHALALHI-NDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYG  230 (445)
Q Consensus       154 ~~~~~~~~~~~~s~~~~~~~~~l~~~~~~--~i~~~~~l~~-~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG  230 (445)
                      ..  ...++++.|++||+++++.......  |.....++.- ..+  ..++.-.+....+++  +..+ +.+-.....++
T Consensus       140 ~~--~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e--~~sa~~~lt~~~~~~--~~~~-~~~i~~~~~g~  212 (485)
T COG3349         140 DR--SLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPE--GCSARFFLTILNLFL--IVTL-EASILRNLRGS  212 (485)
T ss_pred             HH--HHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcc--cCcchhHHHHHHHHH--Hhcc-CcchhhhhcCC
Confidence            01  1124577999999999887654432  2212222211 111  112222222111111  2222 23333445666


Q ss_pred             cch-HHHHHHHHHHHcCcEEEeCCcceeEEEcC---CCcEEEEEeCCe
Q 036458          231 LGE-LPQAFARLSAVYGGTYMLNKPECKVEFDG---DGKVIGVTSEGE  274 (445)
Q Consensus       231 ~~~-L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~---~g~~~~v~~~g~  274 (445)
                      ..| +.+.+.+.+.+.|.+++.+.+|+.|..+.   +.++.++...+.
T Consensus       213 ~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~  260 (485)
T COG3349         213 PDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGP  260 (485)
T ss_pred             CcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCc
Confidence            444 56777788888999999999999998753   445677765453

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.50  E-value=5.1e-14  Score=105.30  Aligned_cols=63  Identities=22%  Similarity=0.465  Sum_probs=53.2

Q ss_pred             EECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC---ch
Q 036458            9 VLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN---GG   85 (445)
Q Consensus         9 IIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~---~~   85 (445)
                      |||+|++||++|++|+++|++|+|+|+++++||+++++..                    .++.+|.+++++...   .+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~--------------------~g~~~d~g~~~~~~~~~~~~   60 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI--------------------PGYRFDLGAHYFFPPDDYPN   60 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE--------------------TTEEEETSS-SEEETTSCHH
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEE--------------------CCEEEeeccEEEeCCCCchH
Confidence            8999999999999999999999999999999999999988                    359999999998763   34


Q ss_pred             hHHHhh
Q 036458           86 LVRILI   91 (445)
Q Consensus        86 l~~~l~   91 (445)
                      +.+++.
T Consensus        61 ~~~l~~   66 (68)
T PF13450_consen   61 LFRLLR   66 (68)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            444443

...

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.46  E-value=2e-12  Score=128.76  Aligned_cols=92  Identities=16%  Similarity=0.282  Sum_probs=68.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeE-EecccceeecC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYN-VDMIPKFMMAN   83 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-iDlgp~~l~~~   83 (445)
                      +||+|||||++||++|..|++.|++|+|+|+++++||.+.+...                    .++. .+.|+|+++..
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~--------------------~g~~~~~~G~h~f~t~   61 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVD--------------------ETILFHQYGPHIFHTN   61 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecC--------------------CCceEEeecceeEecC
Confidence            79999999999999999999999999999999999998877543                    2333 48899999865


Q ss_pred             ch-hHHHhhhc-cccCceeeEEecceEEEeCCeEEEccCC
Q 036458           84 GG-LVRILIHT-DVTKYLNFKAVDGSFVYNKGKIYKVPAT  121 (445)
Q Consensus        84 ~~-l~~~l~~~-g~~~~l~~~~~~~~~~~~~g~~~~vp~~  121 (445)
                      .. ..+.+.+. +..   .+.  ....++.+|+.+++|-+
T Consensus        62 ~~~v~~~~~~~~~~~---~~~--~~~~~~~~g~~~~~P~~   96 (377)
T TIGR00031        62 NQYVWDYISPFFELN---NYQ--HRVLALYNNLDLTLPFN   96 (377)
T ss_pred             cHHHHHHHHhhcccc---cee--EEEEEEECCeEEccCCC
Confidence            44 33433332 211   122  12345678999999987

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PLN02976 amine oxidase

Probab=99.42  E-value=7.3e-12  Score=138.43  Aligned_cols=60  Identities=18%  Similarity=0.254  Sum_probs=54.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA   82 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~   82 (445)
                      .+||+|||+|++|+++|..|+++|++|+|+|+++++||++.+....                   .++.+|+|++|++.
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~-------------------~g~pvDlGas~i~G  752 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSS-------------------LSVPVDLGASIITG  752 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeecccc-------------------CCceeccCcEEEec
Confidence            4799999999999999999999999999999999999999886541                   36889999999875

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.42  E-value=5.3e-12  Score=124.65  Aligned_cols=72  Identities=13%  Similarity=0.328  Sum_probs=60.5

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceee
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMM   81 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~   81 (445)
                      +...|+|||||++||+||-+|-..| .+|+|+|+.+|.|||+.|+.+.+                    =.||+|++|++
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d--------------------~~ielGAqwih   79 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFAD--------------------GVIELGAQWIH   79 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCC--------------------CeEeecceeec
Confidence            4568999999999999999998665 69999999999999999999843                    38999999999


Q ss_pred             c-Cc-hhHHHhhhcc
Q 036458           82 A-NG-GLVRILIHTD   94 (445)
Q Consensus        82 ~-~~-~l~~~l~~~g   94 (445)
                      + .+ ++.++..+.|
T Consensus        80 G~~gNpVY~la~~~g   94 (498)
T KOG0685|consen   80 GEEGNPVYELAKEYG   94 (498)
T ss_pred             CCCCChHHHHHHHhC
Confidence            7 55 4555655565

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=99.29  E-value=2.1e-11  Score=114.63  Aligned_cols=117  Identities=21%  Similarity=0.393  Sum_probs=78.5

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEE-ecccceeec
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNV-DMIPKFMMA   82 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i-Dlgp~~l~~   82 (445)
                      .||.+|||+|++|+++|..|++.|++|+|+||++++||.|-+...++                  .|-.+ --|||+++.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~------------------tGIlvHkYGpHIFHT   62 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQ------------------TGILVHKYGPHIFHT   62 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCC------------------CCeEEeeccCceeec
Confidence            38999999999999999999999999999999999999998876632                  22222 348999987


Q ss_pred             Cch-hHHHhhhccccCceeeEEe-cceEEEeCCeEEEccCChHHHhhccccC-chhHHHHHHHHHH
Q 036458           83 NGG-LVRILIHTDVTKYLNFKAV-DGSFVYNKGKIYKVPATDVEALKSPLMG-LFEKRRARKFFIY  145 (445)
Q Consensus        83 ~~~-l~~~l~~~g~~~~l~~~~~-~~~~~~~~g~~~~vp~~~~~~~~~~l~~-~~~k~~~~~f~~~  145 (445)
                      ++. .++.+..     ..||..- .+..-..+|+.+++|.+ ...+. ++++ .+.....++|+..
T Consensus        63 ~~~~Vwdyv~~-----F~e~~~Y~hrVla~~ng~~~~lP~n-l~ti~-ql~G~~~~p~~a~~~i~~  121 (374)
T COG0562          63 DNKRVWDYVNQ-----FTEFNPYQHRVLALVNGQLYPLPFN-LNTIN-QLFGKNFTPDEARKFIEE  121 (374)
T ss_pred             CchHHHHHHhh-----hhhhhhhccceeEEECCeeeecccc-HHHHH-HHhCccCCHHHHHHHHHH
Confidence            653 3333321     2233221 12234568999999988 44443 3333 2333345555543

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.25  E-value=5.7e-11  Score=117.83  Aligned_cols=65  Identities=22%  Similarity=0.274  Sum_probs=53.1

Q ss_pred             eEEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       224 ~~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      .++|.+|   ...+.++|.+.++..|++++.+++|++|..+ ++++.+|.++.+.+.||.||.+++++.
T Consensus       136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~i~ad~vV~a~G~~s  203 (358)
T PF01266_consen  136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGEIRADRVVLAAGAWS  203 (358)
T ss_dssp             EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEEEEECEEEE--GGGH
T ss_pred             hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccccccceeEecccccc
Confidence            4577888   7889999999999999999999999999984 777888887555599999999988763

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.20  E-value=5.1e-10  Score=109.13  Aligned_cols=60  Identities=23%  Similarity=0.307  Sum_probs=50.2

Q ss_pred             EEeC-CCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCC
Q 036458          225 IYPL-YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPS  286 (445)
Q Consensus       225 ~~p~-gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~  286 (445)
                      .||. .....|.+++.+.+++.|++++++++|.+|..+ +. ...+. .+|++++||.+|.+.+
T Consensus       103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~-~~-~f~l~t~~g~~i~~d~lilAtG  164 (408)
T COG2081         103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD-DS-GFRLDTSSGETVKCDSLILATG  164 (408)
T ss_pred             ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec-Cc-eEEEEcCCCCEEEccEEEEecC
Confidence            6888 678999999999999999999999999999984 43 34455 4677899999998754

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.19  E-value=3.1e-10  Score=114.99  Aligned_cols=63  Identities=16%  Similarity=0.215  Sum_probs=49.3

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      ++|..|   ...+.++|.+.++..|++++++++|.+|..+ ++.+ .|.++++++.||.||.+++.+.
T Consensus       139 ~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g~i~ad~vV~A~G~~s  204 (393)
T PRK11728        139 FVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQGEYEARTLINCAGLMS  204 (393)
T ss_pred             EcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECCCEEEeCEEEECCCcch
Confidence            456666   4678899999998999999999999999874 4444 4655555799999999888764

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.18  E-value=3.6e-10  Score=113.28  Aligned_cols=63  Identities=30%  Similarity=0.376  Sum_probs=49.8

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeE-EEcCEEEECCCCC
Q 036458          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGET-AKCKKVVCDPSYL  288 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~-~~ad~VI~~~~~~  288 (445)
                      +.|.+|   .+++..+|++.+..+|++++||++|++|....+| ++.+. .+|++ ++|+.||.+++..
T Consensus       143 ~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~  210 (429)
T COG0579         143 LVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLY  210 (429)
T ss_pred             EcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchh
Confidence            345555   6789999999999999999999999999985454 33343 46665 9999999988754

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.13  E-value=6.3e-10  Score=112.34  Aligned_cols=62  Identities=16%  Similarity=0.224  Sum_probs=47.3

Q ss_pred             eEEeCCC-cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCC
Q 036458          224 YIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPS  286 (445)
Q Consensus       224 ~~~p~gG-~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~  286 (445)
                      ..||.-. ...+.++|.+.+...|++++++++|++|..+ ++.+..|.+ +++++.||.||.+.+
T Consensus       100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vILAtG  163 (409)
T PF03486_consen  100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVILATG  163 (409)
T ss_dssp             EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE---
T ss_pred             EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEEecC
Confidence            4688875 7889999999999999999999999999984 566677887 889999999998754

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.07  E-value=3.1e-09  Score=108.31  Aligned_cols=65  Identities=17%  Similarity=0.200  Sum_probs=47.6

Q ss_pred             eEEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eC----CeEEEcCEEEECCCCCC
Q 036458          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SE----GETAKCKKVVCDPSYLP  289 (445)
Q Consensus       224 ~~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~----g~~~~ad~VI~~~~~~p  289 (445)
                      +++|..|   ...+.++|.+.++..|++++.+++|++|..+ ++.+...+ ..    +.+++||+||.+.+.+.
T Consensus       186 ~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s  258 (410)
T PRK12409        186 YYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS  258 (410)
T ss_pred             EEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence            4566654   3456788889999999999999999999874 55443332 22    23789999999988764

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.06  E-value=4.6e-09  Score=105.76  Aligned_cols=63  Identities=17%  Similarity=0.144  Sum_probs=47.5

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      +.|.+|   ...+.+++.+.++..|++++.+++|++|..+ ++.+ .|.+++.++.||.||.+.+.+.
T Consensus       135 ~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       135 LDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKGSYQANKLVVTAGAWT  200 (380)
T ss_pred             EcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCCEEEeCEEEEecCcch
Confidence            345555   3467888888888899999999999999873 5544 4555555799999998877653

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.05  E-value=3e-09  Score=110.27  Aligned_cols=61  Identities=23%  Similarity=0.281  Sum_probs=48.6

Q ss_pred             eCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeC-----CeEEEcCEEEECCCCC
Q 036458          227 PLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSE-----GETAKCKKVVCDPSYL  288 (445)
Q Consensus       227 p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~-----g~~~~ad~VI~~~~~~  288 (445)
                      +.+|...+.+.|.+.++..|++++++++|++|.. +++++++|...     ...++|+.||.+.+-+
T Consensus       126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~  191 (466)
T PRK08274        126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGF  191 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence            3445567889998888999999999999999998 47888887642     3468999999987644

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.04  E-value=3.9e-09  Score=111.27  Aligned_cols=65  Identities=17%  Similarity=0.057  Sum_probs=50.5

Q ss_pred             eEEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CC--eEEEcCEEEECCCCCCc
Q 036458          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EG--ETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       224 ~~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g--~~~~ad~VI~~~~~~p~  290 (445)
                      +++|. |   -..+..++++.+..+|++++.+++|++|.. +++++++|..    +|  .+++|+.||.+++.|..
T Consensus       139 ~~~~d-g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~  212 (546)
T PRK11101        139 VKVPD-GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ  212 (546)
T ss_pred             EEecC-cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence            35663 4   346778888888899999999999999988 4677777653    23  47999999999988754

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.00  E-value=1.2e-08  Score=103.79  Aligned_cols=56  Identities=21%  Similarity=0.130  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL  288 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~  288 (445)
                      .+.++|++.+...|++++.+++|++|...+++++.+|.++..++.|++||.+++.+
T Consensus       184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~  239 (407)
T TIGR01373       184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGH  239 (407)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChh
Confidence            56777888888999999999999999763356677777655579999988776544

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.00  E-value=1.4e-08  Score=103.67  Aligned_cols=64  Identities=17%  Similarity=0.244  Sum_probs=51.7

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      ++|..|   ...+.++|.+.++..|++|+++++|++|..+ ++++.+|++++.++.||+||.+.+.+.
T Consensus       191 ~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~~~~a~~VV~a~G~~~  257 (416)
T PRK00711        191 RLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGGVITADAYVVALGSYS  257 (416)
T ss_pred             ECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCcEEeCCEEEECCCcch
Confidence            456655   3477889998888899999999999999874 566667777777899999999988764

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.98  E-value=7.4e-10  Score=102.05  Aligned_cols=66  Identities=15%  Similarity=0.226  Sum_probs=58.0

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecCch
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMANGG   85 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~~~   85 (445)
                      +++|||+|++||+||+.|+.+|++|+|+||..=+|||.+|-++.                    +-.+|.|.+++..+++
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~--------------------~g~~DhGAqYfk~~~~   62 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLD--------------------GGRFDHGAQYFKPRDE   62 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccC--------------------CccccccceeecCCch
Confidence            69999999999999999999999999999999999999998884                    3459999999988776


Q ss_pred             hHHHhh
Q 036458           86 LVRILI   91 (445)
Q Consensus        86 l~~~l~   91 (445)
                      ++-.++
T Consensus        63 ~F~~~V   68 (331)
T COG3380          63 LFLRAV   68 (331)
T ss_pred             HHHHHH
Confidence            554443

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.96  E-value=2.9e-08  Score=99.76  Aligned_cols=63  Identities=27%  Similarity=0.274  Sum_probs=46.4

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      +.|..|   ...+.+++.+.+...|++++++++|++|..+ ++.+ .|.+++.+++||.||.+.+.+.
T Consensus       139 ~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~~g~~~a~~vV~A~G~~~  204 (376)
T PRK11259        139 FEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDGV-TVTTADGTYEAKKLVVSAGAWV  204 (376)
T ss_pred             EcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCeE-EEEeCCCEEEeeEEEEecCcch
Confidence            345555   2456777777778889999999999999874 5443 4555444799999999887663

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.93  E-value=3.8e-08  Score=101.97  Aligned_cols=64  Identities=14%  Similarity=0.162  Sum_probs=49.3

Q ss_pred             EEeCC-C---cchHHHHHHHHHHH----cC--cEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          225 IYPLY-G---LGELPQAFARLSAV----YG--GTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       225 ~~p~g-G---~~~L~q~l~r~~~~----~G--g~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      +.|.. |   .+.+.++|.+.++.    .|  ++++++++|++|..+ ++..+.|.++..+++||.||.+++.+.
T Consensus       200 ~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G~i~A~~VVvaAG~~S  273 (497)
T PTZ00383        200 YVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRGEIRARFVVVSACGYS  273 (497)
T ss_pred             EeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCCEEEeCEEEECcChhH
Confidence            45644 3   36789999998888    77  678999999999873 455666776555799999999887664

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.92  E-value=1.4e-08  Score=104.07  Aligned_cols=67  Identities=25%  Similarity=0.223  Sum_probs=52.1

Q ss_pred             ceEEeCCC--cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCCCCCcc
Q 036458          223 PYIYPLYG--LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPSYLPDK  291 (445)
Q Consensus       223 ~~~~p~gG--~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~~~p~~  291 (445)
                      .+.|+-+=  -..|.-..++.++.+|++++..++|+++.. +++ +++|..    +|+  +++|+.||.++++|.+.
T Consensus       153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~  227 (532)
T COG0578         153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE  227 (532)
T ss_pred             eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence            45666554  236777778888999999999999999998 466 888874    343  58999999999998654

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.90  E-value=1.5e-08  Score=106.85  Aligned_cols=42  Identities=29%  Similarity=0.522  Sum_probs=39.5

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +.+|||||||+| +|++||...+++|.+|+|+||++.+||.++
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~   55 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA   55 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence            458999999999 999999999999999999999999999776

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.88  E-value=7.9e-08  Score=99.69  Aligned_cols=65  Identities=14%  Similarity=0.064  Sum_probs=48.4

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE---eCC--eEEEcCEEEECCCCCC
Q 036458          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT---SEG--ETAKCKKVVCDPSYLP  289 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~---~~g--~~~~ad~VI~~~~~~p  289 (445)
                      +.|..|   ...+.++|.+.++..|++++++++|++|..++++.+....   .+|  .+++||+||.+++.+.
T Consensus       168 ~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       168 WAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             EeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence            456666   4688999999998899999999999999874344333221   123  3689999999888764

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.86  E-value=2e-08  Score=103.94  Aligned_cols=62  Identities=19%  Similarity=0.171  Sum_probs=47.4

Q ss_pred             eEEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 036458          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL  288 (445)
Q Consensus       224 ~~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~  288 (445)
                      .+.|..|   ...+.++|.+.+...|++|+.+++|++|..  ++ .+.|.+++.++.||.||.+.+.+
T Consensus       172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~~-~~~v~t~~g~v~A~~VV~Atga~  236 (460)
T TIGR03329       172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE--GQ-PAVVRTPDGQVTADKVVLALNAW  236 (460)
T ss_pred             EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee--CC-ceEEEeCCcEEECCEEEEccccc
Confidence            3456666   346889999999999999999999999964  23 24466655579999999886655

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.86  E-value=3.9e-08  Score=106.29  Aligned_cols=63  Identities=22%  Similarity=0.178  Sum_probs=48.4

Q ss_pred             eEEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCCC
Q 036458          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       224 ~~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~p  289 (445)
                      .++|..|   ...+.+++.+.+.. |++++.+++|++|..+ ++.+. |.+ +|..+.||.||.+.+.+.
T Consensus       397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~~-v~t~~g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE-DDGWQ-LDFAGGTLASAPVVVLANGHDA  463 (662)
T ss_pred             EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEEE-EEECCCcEEECCEEEECCCCCc
Confidence            4577777   34788889888877 9999999999999874 55554 554 556678999999887663

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.86  E-value=1.6e-07  Score=97.51  Aligned_cols=65  Identities=17%  Similarity=0.125  Sum_probs=48.2

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcC-cEEEeCCcceeEEEcCCCcEEEEEe---CCe--EEEcCEEEECCCCCC
Q 036458          225 IYPLYG---LGELPQAFARLSAVYG-GTYMLNKPECKVEFDGDGKVIGVTS---EGE--TAKCKKVVCDPSYLP  289 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~G-g~i~l~~~V~~I~~~~~g~~~~v~~---~g~--~~~ad~VI~~~~~~p  289 (445)
                      +.|.+|   .+.+.++|.+.++..| ++++++++|++|..++++.+.....   +|+  ++.|++||.+++.+.
T Consensus       173 ~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s  246 (494)
T PRK05257        173 RIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA  246 (494)
T ss_pred             EcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence            456665   5689999999988887 5999999999998754554433221   343  689999999887764

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.85  E-value=1.2e-07  Score=90.14  Aligned_cols=55  Identities=16%  Similarity=0.242  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHcCcEEEeCCcceeEEE-cCCCcEEEEE-eCCeEEEcCEEEECCCCC
Q 036458          234 LPQAFARLSAVYGGTYMLNKPECKVEF-DGDGKVIGVT-SEGETAKCKKVVCDPSYL  288 (445)
Q Consensus       234 L~q~l~r~~~~~Gg~i~l~~~V~~I~~-~~~g~~~~v~-~~g~~~~ad~VI~~~~~~  288 (445)
                      -..+|...++.+|+.++-+..|..+.. ++++..++|. ++|..+.|+.+|.+.+.|
T Consensus       155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW  211 (399)
T KOG2820|consen  155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW  211 (399)
T ss_pred             HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence            346677788999999999999999884 3455566665 588889999999987765

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.84  E-value=1.4e-07  Score=95.07  Aligned_cols=238  Identities=16%  Similarity=0.216  Sum_probs=125.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhC----CCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccce
Q 036458            4 DYDVIVLGTGLKECILSGVLSVD----GLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKF   79 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~   79 (445)
                      +.++-|||+|+++|+||..|-|.    |.++.+||+.+.+||.+-+....+                  +||.+--|-..
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~------------------~GYv~RgGR~~   63 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPE------------------NGYVIRGGRMM   63 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCC------------------CCeeecCCccc
Confidence            45789999999999999999887    569999999999999987655422                  56766444222


Q ss_pred             eecCchhHHHhhhc------c--c-cCceeeEEecceE-----EEeCCeEEEccCChHHHhhccccCc--hhHHHHHHHH
Q 036458           80 MMANGGLVRILIHT------D--V-TKYLNFKAVDGSF-----VYNKGKIYKVPATDVEALKSPLMGL--FEKRRARKFF  143 (445)
Q Consensus        80 l~~~~~l~~~l~~~------g--~-~~~l~~~~~~~~~-----~~~~g~~~~vp~~~~~~~~~~l~~~--~~k~~~~~f~  143 (445)
                      -....-+.++|...      |  + .++..|...++.+     +..+|+....         ..-+++  .++..+.+++
T Consensus        64 ~~~~eclwdLls~IPSle~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~~---------~~~~~Ls~k~r~eL~kL~  134 (500)
T PF06100_consen   64 EFHYECLWDLLSSIPSLEDPGKSVLDEIYWFNKEDPNYSKARLIDKRGQIVDT---------DSKFGLSEKDRMELIKLL  134 (500)
T ss_pred             cchhHHHHHHHHhCCCCCCCCCcHHHHHHHhccCCCCCcceeeeccCCccccc---------cCcCCCCHHHHHHHHHHh
Confidence            11111233333221      1  0 1111111111111     1122322111         111333  3333344432


Q ss_pred             HHHHhhhccCccccccccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCc
Q 036458          144 IYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSP  223 (445)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~  223 (445)
                         ..     ++  +  .+.+.++.|++..--+..+.-   ..+-++..-..+  .++.+.=..+++|+.-+....--+.
T Consensus       135 ---l~-----~E--~--~L~~~~I~d~F~~~FF~SnFW---~~W~T~FAFqpW--hSa~E~rRyl~Rf~h~~~~l~~l~~  197 (500)
T PF06100_consen  135 ---LT-----PE--E--DLGDKRIEDWFSESFFESNFW---YMWSTMFAFQPW--HSAVEFRRYLHRFIHEIPGLNDLSG  197 (500)
T ss_pred             ---cC-----CH--H--HhCcccHHHhcchhhhcCchh---HhHHHhhccCcc--hhHHHHHHHHHHHHHhcCCCCCccc
Confidence               21     11  1  235577777775322222221   123333332222  2444443344445443333211233


Q ss_pred             eEEeCCC-cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCC---cEEEEE--eCCe--EE---EcCEEEECC
Q 036458          224 YIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDG---KVIGVT--SEGE--TA---KCKKVVCDP  285 (445)
Q Consensus       224 ~~~p~gG-~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g---~~~~v~--~~g~--~~---~ad~VI~~~  285 (445)
                      ..+.+|- ...|..-+.+.++.+|+.+++|+.|+.|..+.++   .+..+.  .+|+  ++   .-|.|+++.
T Consensus       198 l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~  270 (500)
T PF06100_consen  198 LDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTN  270 (500)
T ss_pred             cccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEEC
Confidence            4566776 5678899999999999999999999999975322   233333  2443  33   356777753

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.83  E-value=8.2e-08  Score=97.23  Aligned_cols=55  Identities=11%  Similarity=0.051  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p  289 (445)
                      .|.+.|.+.++..|++++.+++|+++..+ ++.+. ++ .+|++++||.||.+.+..+
T Consensus       114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~a~~vV~AdG~~S  169 (392)
T PRK08773        114 LLVDRLWAALHAAGVQLHCPARVVALEQD-ADRVR-LRLDDGRRLEAALAIAADGAAS  169 (392)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeEE-EEECCCCEEEeCEEEEecCCCc
Confidence            45566667777789999999999999874 44444 44 4678899999999877654

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.80  E-value=1.5e-07  Score=94.36  Aligned_cols=34  Identities=26%  Similarity=0.475  Sum_probs=32.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      |||+|||+|++|+++|+.|+++|++|+|+|++..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            6999999999999999999999999999999875

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.80  E-value=2e-07  Score=96.33  Aligned_cols=42  Identities=21%  Similarity=0.256  Sum_probs=37.6

Q ss_pred             CcccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG~~~   44 (445)
                      +.+||||||||++|+++|+.|++.  |.+|+|+||.+.+|-..+
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS   48 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS   48 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence            468999999999999999999999  999999999778876544

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.80  E-value=3.9e-09  Score=95.12  Aligned_cols=42  Identities=31%  Similarity=0.414  Sum_probs=35.5

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      .++||+|||+|.+||+||++|+++|+||+++|++..+||...
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~   57 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW   57 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence            368999999999999999999999999999999999998764

>PRK06847 hypothetical protein; Provisional

Probab=98.79  E-value=8.5e-08  Score=96.38  Aligned_cols=39  Identities=18%  Similarity=0.255  Sum_probs=37.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      |.+..||+|||||++||++|..|++.|.+|+|+|+++.+
T Consensus         1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~   39 (375)
T PRK06847          1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW   39 (375)
T ss_pred             CCCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            888999999999999999999999999999999998764

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.77  E-value=4.4e-07  Score=96.48  Aligned_cols=43  Identities=28%  Similarity=0.553  Sum_probs=40.4

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +.++||+|||+|.+|+++|..++++|++|+++||++..||.+.
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~   52 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA   52 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence            4679999999999999999999999999999999999999865

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.75  E-value=8.6e-09  Score=92.45  Aligned_cols=41  Identities=32%  Similarity=0.465  Sum_probs=38.6

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +-||+|+|+|.+||+||++||++|.||+++||+-++||-++
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w   70 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW   70 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence            46999999999999999999999999999999999998764

>PRK07190 hypothetical protein; Provisional

Probab=98.72  E-value=2.5e-07  Score=96.23  Aligned_cols=39  Identities=21%  Similarity=0.278  Sum_probs=35.9

Q ss_pred             CCC-cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            1 MDE-DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         1 m~~-~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      |++ .+||+|||||++||++|+.|+++|.+|+|+||++.+
T Consensus         1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~   40 (487)
T PRK07190          1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP   40 (487)
T ss_pred             CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            553 489999999999999999999999999999999876

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.68  E-value=9.1e-07  Score=94.03  Aligned_cols=42  Identities=36%  Similarity=0.665  Sum_probs=39.5

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      .++||+|||+|.+|++||..++++|++|+++||++..||.+.
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~   56 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA   56 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence            468999999999999999999999999999999999999765

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.67  E-value=4e-07  Score=92.11  Aligned_cols=58  Identities=21%  Similarity=0.108  Sum_probs=44.3

Q ss_pred             cchHHHHHHHHHHHcC-cEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCCC
Q 036458          231 LGELPQAFARLSAVYG-GTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~G-g~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~p  289 (445)
                      ...|-++|.+.+...+ .+++.+++|+.+..+ ++.+..... +|++++||.||.+.+...
T Consensus       103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~v~l~~dG~~~~a~llVgADG~~S  162 (387)
T COG0654         103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVTVTLSFDGETLDADLLVGADGANS  162 (387)
T ss_pred             hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceEEEEcCCCcEEecCEEEECCCCch
Confidence            3455666777777666 699999999999985 455554445 889999999999987653

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.63  E-value=8.9e-07  Score=89.71  Aligned_cols=35  Identities=20%  Similarity=0.456  Sum_probs=33.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            58999999999999999999999999999999984

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.60  E-value=1.1e-06  Score=93.36  Aligned_cols=55  Identities=20%  Similarity=0.183  Sum_probs=44.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS  286 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~  286 (445)
                      ..|...|.+.+...|+++++++.|+++..+++|+++|+..    +|+  .+.|+.||++.+
T Consensus       143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG  203 (588)
T PRK08958        143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATG  203 (588)
T ss_pred             HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence            3588888887777899999999999999855788999863    453  578999998754

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.58  E-value=5.7e-08  Score=99.50  Aligned_cols=54  Identities=19%  Similarity=0.258  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 036458          234 LPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL  288 (445)
Q Consensus       234 L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~  288 (445)
                      +-+.|.+.++..|++++.+++|++|..+ ++++++++++|+++.|+.||.+.+..
T Consensus       110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157        110 FDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEADGDVIEAKTVILADGVN  163 (428)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEEcCCcEEECCEEEEEeCCC
Confidence            3345666677789999999999999874 66777777778889999999887654

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.58  E-value=5.9e-08  Score=92.04  Aligned_cols=40  Identities=35%  Similarity=0.567  Sum_probs=38.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      +|||+|||+|++||+||++|+++|++|+++||+..+||..
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~   60 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS   60 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence            6899999999999999999999999999999999998763

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.57  E-value=6.8e-08  Score=91.85  Aligned_cols=41  Identities=29%  Similarity=0.443  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      .++||+|||+|++||+||..|+++|++|+++|++..+||..
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~   64 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM   64 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence            36899999999999999999999999999999999998854

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.56  E-value=6.4e-08  Score=98.18  Aligned_cols=43  Identities=26%  Similarity=0.481  Sum_probs=40.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      .+|||+|||||++|++||+.|+++|.+|+++||.+.+|....+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~   44 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence            4699999999999999999999999999999999999987655

>PRK10015 oxidoreductase; Provisional

Probab=98.54  E-value=8.3e-08  Score=98.30  Aligned_cols=42  Identities=31%  Similarity=0.583  Sum_probs=38.1

Q ss_pred             CC-CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            1 MD-EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         1 m~-~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      |+ ++|||||||+|++|++||+.|+++|++|+++||++++|-.
T Consensus         1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k   43 (429)
T PRK10015          1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK   43 (429)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence            65 4699999999999999999999999999999999988643

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.52  E-value=6.9e-07  Score=91.74  Aligned_cols=64  Identities=14%  Similarity=0.065  Sum_probs=51.0

Q ss_pred             EEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcC-CCcEEEEEe--CCeEEEcCEEEECCCCC
Q 036458          225 IYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDG-DGKVIGVTS--EGETAKCKKVVCDPSYL  288 (445)
Q Consensus       225 ~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~-~g~~~~v~~--~g~~~~ad~VI~~~~~~  288 (445)
                      .+|.++...+.++|.+.++..|++++++++|++|..++ ++++++|..  ++.+++|+.||++.+-+
T Consensus       116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~  182 (432)
T TIGR02485       116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL  182 (432)
T ss_pred             eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence            35566667899999999999999999999999998753 577887764  34689999999876633

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR00275 flavoprotein, HI0933 family

Probab=98.51  E-value=1.5e-06  Score=88.22  Aligned_cols=61  Identities=18%  Similarity=0.243  Sum_probs=47.9

Q ss_pred             EEeCCC-cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCC
Q 036458          225 IYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSY  287 (445)
Q Consensus       225 ~~p~gG-~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~  287 (445)
                      .||... ..++.+.+.+.++..|++++++++|++|..+ ++ .+.++.+++++.||.||.+.+.
T Consensus        97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~~~~~i~ad~VIlAtG~  158 (400)
T TIGR00275        97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVETSGGEYEADKVILATGG  158 (400)
T ss_pred             eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEECCcEEEcCEEEECCCC
Confidence            455543 5678899999999999999999999999763 44 3456667778999999998664

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.51  E-value=1.2e-07  Score=99.30  Aligned_cols=44  Identities=27%  Similarity=0.449  Sum_probs=40.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |++.|||||||||++|+++|+.||++|.+|+++||++..+|..+
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~   46 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSS   46 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            77889999999999999999999999999999999988777653

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.49  E-value=1.4e-07  Score=97.29  Aligned_cols=45  Identities=22%  Similarity=0.276  Sum_probs=41.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      |.+..+|+|||||++||+||..|.++|++|+++||++.+||.|.-
T Consensus         7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~   51 (461)
T PLN02172          7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY   51 (461)
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence            345689999999999999999999999999999999999999864

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.48  E-value=1.4e-07  Score=97.95  Aligned_cols=44  Identities=25%  Similarity=0.309  Sum_probs=41.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |+.+|||+|||+|.+|+.||..|++.|++|+++|+++.+||.|.
T Consensus         1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~   44 (471)
T PRK06467          1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL   44 (471)
T ss_pred             CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence            78889999999999999999999999999999999999999763

>PRK06116 glutathione reductase; Validated

Probab=98.48  E-value=1.3e-07  Score=97.70  Aligned_cols=43  Identities=30%  Similarity=0.487  Sum_probs=40.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |+.+|||+|||+|.+|++||..|++.|++|+++|++ .+||.|.
T Consensus         1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~   43 (450)
T PRK06116          1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV   43 (450)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence            777899999999999999999999999999999996 8999774

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.45  E-value=1.9e-07  Score=96.70  Aligned_cols=43  Identities=28%  Similarity=0.358  Sum_probs=40.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      .+|||+|||+|++|+.||..|++.|++|+++|+++.+||.|..
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~   46 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH   46 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence            4799999999999999999999999999999999999998743

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.45  E-value=2e-07  Score=96.87  Aligned_cols=44  Identities=23%  Similarity=0.429  Sum_probs=41.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      |...|||+|||+|.+|+.||..|++.|++|+++|++ .+||.|..
T Consensus         1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~   44 (472)
T PRK05976          1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH   44 (472)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence            888999999999999999999999999999999996 88998853

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.44  E-value=1.9e-07  Score=96.12  Aligned_cols=44  Identities=23%  Similarity=0.461  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC-CCCcccc
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY-YGGESTS   45 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~-~GG~~~s   45 (445)
                      .++|||||||||.+|+.||..|++.|++|+++|+.+. +||.|..
T Consensus         1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~   45 (441)
T PRK08010          1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN   45 (441)
T ss_pred             CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence            0469999999999999999999999999999999874 8998853

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.44  E-value=1.8e-07  Score=92.66  Aligned_cols=36  Identities=25%  Similarity=0.404  Sum_probs=32.1

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      ++||+|||||++||++|..|+++|++|+|+||++.+
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            589999999999999999999999999999998765

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.42  E-value=2.2e-07  Score=96.34  Aligned_cols=43  Identities=28%  Similarity=0.393  Sum_probs=40.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |. +|||+|||+|.+|++||..+++.|++|+++|+++.+||.|.
T Consensus         1 m~-~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~   43 (466)
T PRK06115          1 MA-SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL   43 (466)
T ss_pred             CC-cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence            64 59999999999999999999999999999999899999873

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.41  E-value=2.8e-07  Score=96.36  Aligned_cols=44  Identities=30%  Similarity=0.473  Sum_probs=39.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |..+|||+|||||++|+++|+.|+++|.+|+++||++..+|..+
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~   46 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSS   46 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCch
Confidence            66789999999999999999999999999999999987666543

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.41  E-value=3.6e-07  Score=93.77  Aligned_cols=49  Identities=16%  Similarity=0.230  Sum_probs=44.4

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCe-EEEEecCCCCCCcccccchhh
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLK-VLHMDRNAYYGGESTSLNLTQ   50 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~n~~~GG~~~s~~~~~   50 (445)
                      .+.+||+|||||++|+++|++|.++|.. +++|||++.+||.|...+..+
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~   55 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG   55 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence            4679999999999999999999999998 999999999999988765533

>PRK06370 mercuric reductase; Validated

Probab=98.40  E-value=3e-07  Score=95.28  Aligned_cols=43  Identities=30%  Similarity=0.461  Sum_probs=39.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |..+|||+|||+|.+|++||..|++.|++|+++|+. .+||.|.
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~   44 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV   44 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence            778899999999999999999999999999999996 6777764

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.40  E-value=2.9e-07  Score=94.72  Aligned_cols=43  Identities=35%  Similarity=0.529  Sum_probs=39.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC-CCCccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY-YGGEST   44 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~-~GG~~~   44 (445)
                      |. +|||+|||||.+|++||..|++.|++|+++||++. +||.|-
T Consensus         1 ~~-~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~   44 (438)
T PRK07251          1 ML-TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI   44 (438)
T ss_pred             CC-ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence            64 69999999999999999999999999999999975 799763

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.37  E-value=3.8e-07  Score=94.81  Aligned_cols=45  Identities=27%  Similarity=0.448  Sum_probs=41.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEec------CCCCCCcccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDR------NAYYGGESTS   45 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~------n~~~GG~~~s   45 (445)
                      |+.+||+||||+|.+|++||.+|++.|++|+++|+      +..+||.|..
T Consensus         1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n   51 (475)
T PRK06327          1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN   51 (475)
T ss_pred             CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence            88899999999999999999999999999999998      4789998854

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.37  E-value=4.1e-07  Score=87.81  Aligned_cols=37  Identities=30%  Similarity=0.503  Sum_probs=35.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      |||+|||||++||++|..|++.|.+|+|+||++.++.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~   37 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY   37 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            7999999999999999999999999999999998765

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.36  E-value=3.6e-07  Score=93.63  Aligned_cols=40  Identities=33%  Similarity=0.520  Sum_probs=34.2

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      ||||||||++|++||..+||+|.+|+++|+.+.+||...+
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~   40 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS   40 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence            8999999999999999999999999999999999998754

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.36  E-value=2.1e-05  Score=79.96  Aligned_cols=55  Identities=22%  Similarity=0.302  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CC--eEEEcCEEEECCCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EG--ETAKCKKVVCDPSYL  288 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g--~~~~ad~VI~~~~~~  288 (445)
                      ++.+.|.+.++..|+++++++.|.++..+ ++++..+.. +|  ..++||.||++.+.+
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf  317 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSF  317 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence            78899999998999999999999999874 566666543 44  458999999887654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.35  E-value=4.6e-07  Score=93.94  Aligned_cols=44  Identities=32%  Similarity=0.526  Sum_probs=39.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      |.++|||+|||+|.+|++||..|++.|++|+++|++ .+||.|..
T Consensus         1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~   44 (466)
T PRK07818          1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLN   44 (466)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence            566799999999999999999999999999999985 78887754

>PLN02985 squalene monooxygenase

Probab=98.35  E-value=1.3e-06  Score=91.32  Aligned_cols=36  Identities=31%  Similarity=0.482  Sum_probs=33.5

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..+||+|||||++||++|..|+++|++|+++||...
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            468999999999999999999999999999999753

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.34  E-value=4.5e-07  Score=95.94  Aligned_cols=44  Identities=27%  Similarity=0.442  Sum_probs=40.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      |...|||+|||||.+||+||..|++.|++|+++|++ .+||.+..
T Consensus         1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~   44 (555)
T TIGR03143         1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI   44 (555)
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence            788899999999999999999999999999999996 68997653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.34  E-value=5e-07  Score=92.14  Aligned_cols=39  Identities=23%  Similarity=0.409  Sum_probs=35.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      |+..+||+|||||++||++|..|+++|++|+|+||++..
T Consensus        15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364         15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            345799999999999999999999999999999999865

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.33  E-value=5.4e-07  Score=95.30  Aligned_cols=44  Identities=36%  Similarity=0.570  Sum_probs=41.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC--CCCCccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA--YYGGEST   44 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~--~~GG~~~   44 (445)
                      |..++||||||+|++||+||..++++|.+|+||||++  .+||.++
T Consensus         1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834          1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            7788999999999999999999999999999999999  8899664

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.33  E-value=5.6e-07  Score=94.20  Aligned_cols=43  Identities=16%  Similarity=0.373  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +.++||||||+|.+|++||..++++|.+|+||||++..||...
T Consensus        59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~  101 (506)
T PRK06481         59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM  101 (506)
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            3578999999999999999999999999999999999999653

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.32  E-value=5.1e-07  Score=93.50  Aligned_cols=43  Identities=30%  Similarity=0.456  Sum_probs=39.7

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      +.+|||+|||+|++|++||..|++.|++|+++|++. +||.|..
T Consensus         2 ~~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~   44 (462)
T PRK06416          2 AFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN   44 (462)
T ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence            467999999999999999999999999999999988 9998754

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.32  E-value=1.1e-06  Score=85.14  Aligned_cols=34  Identities=32%  Similarity=0.544  Sum_probs=32.7

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      ..+||||||||++|+++|+.|+|.|.+|+|+||.
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            5689999999999999999999999999999997

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.32  E-value=5.7e-07  Score=93.13  Aligned_cols=41  Identities=32%  Similarity=0.528  Sum_probs=38.5

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      .|||+|||+|++|+.||..|++.|++|+++|+ +.+||.|..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~   41 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN   41 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence            48999999999999999999999999999999 899998754

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.31  E-value=5.2e-07  Score=93.02  Aligned_cols=40  Identities=28%  Similarity=0.451  Sum_probs=37.9

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +|||+|||+|.+|++||..+++.|++|+++|+ +.+||.|.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~   41 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV   41 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence            69999999999999999999999999999999 58999876

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.31  E-value=5.7e-07  Score=94.19  Aligned_cols=42  Identities=36%  Similarity=0.492  Sum_probs=38.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecC-CCCCCc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN-AYYGGE   42 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n-~~~GG~   42 (445)
                      |..+|||||||||++|+.||..+|+.|.+|+++|++ +.+|+.
T Consensus         1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m   43 (618)
T PRK05192          1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM   43 (618)
T ss_pred             CCccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence            566799999999999999999999999999999998 477763

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.31  E-value=2.8e-06  Score=87.45  Aligned_cols=65  Identities=23%  Similarity=0.217  Sum_probs=55.1

Q ss_pred             EeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCcc
Q 036458          226 YPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDK  291 (445)
Q Consensus       226 ~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~~  291 (445)
                      .|.-|   -..++|++++.+..+|+.|..|++|++|.. +.++..+|.+.-..++|.+||.+++.|...
T Consensus       178 ~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~-~~~~~~gVeT~~G~iet~~~VNaaGvWAr~  245 (856)
T KOG2844|consen  178 SPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHV-ETDKFGGVETPHGSIETECVVNAAGVWARE  245 (856)
T ss_pred             cCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEe-ecCCccceeccCcceecceEEechhHHHHH
Confidence            46666   346899999999999999999999999998 566677998876779999999999998643

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.30  E-value=1.2e-05  Score=80.91  Aligned_cols=58  Identities=14%  Similarity=0.211  Sum_probs=48.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CC--eEEEcCEEEECCCCC-Cc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EG--ETAKCKKVVCDPSYL-PD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g--~~~~ad~VI~~~~~~-p~  290 (445)
                      ..|.++|.+.++.+||+++.+++|.++.. +++++.+|.+ ++  .+++||+||.+++.| ..
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~  324 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGSFFSN  324 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCCCcCH
Confidence            36888999999999999999999999988 4777887774 44  489999999988877 54

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.30  E-value=6.3e-07  Score=90.79  Aligned_cols=39  Identities=23%  Similarity=0.336  Sum_probs=36.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      |.+..||+|||||++||++|..|+++|++|+|+||++.+
T Consensus         1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~   39 (396)
T PRK08163          1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI   39 (396)
T ss_pred             CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence            778899999999999999999999999999999999754

>PRK07121 hypothetical protein; Validated

Probab=98.30  E-value=7.1e-07  Score=93.21  Aligned_cols=58  Identities=24%  Similarity=0.324  Sum_probs=46.7

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe--CC--eEEEc-CEEEECCCCC
Q 036458          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS--EG--ETAKC-KKVVCDPSYL  288 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~--~g--~~~~a-d~VI~~~~~~  288 (445)
                      ...+.+.|.+.++..|++++++++|++|..+++|++++|..  ++  ..++| +.||.+.+-+
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~  238 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGF  238 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCc
Confidence            45688899998899999999999999999855678888863  33  35788 9999887654

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.30  E-value=5.8e-07  Score=92.72  Aligned_cols=41  Identities=24%  Similarity=0.400  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      ++|||+|||+|.+|+.||..|++.|++|+++|++ .+||.|.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~   41 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV   41 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence            4699999999999999999999999999999995 6899774

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.30  E-value=6.9e-07  Score=90.29  Aligned_cols=38  Identities=24%  Similarity=0.287  Sum_probs=35.1

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      .+.+||+|||+|++||++|..|+++|++|+|+|+++.+
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            34689999999999999999999999999999999765

>PRK09126 hypothetical protein; Provisional

Probab=98.29  E-value=7e-07  Score=90.33  Aligned_cols=39  Identities=28%  Similarity=0.424  Sum_probs=35.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      |. ++||+|||||++||++|..|+++|++|+|+||.+.++
T Consensus         1 ~~-~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~   39 (392)
T PRK09126          1 MM-HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAA   39 (392)
T ss_pred             CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence            55 5999999999999999999999999999999998753

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.28  E-value=5.9e-07  Score=82.04  Aligned_cols=38  Identities=24%  Similarity=0.392  Sum_probs=32.6

Q ss_pred             EEECCChhHHHHHHHhhhCCCe-EEEEecCCCCCCcccc
Q 036458            8 IVLGTGLKECILSGVLSVDGLK-VLHMDRNAYYGGESTS   45 (445)
Q Consensus         8 iIIGaGl~Gl~aA~~La~~G~~-VlvlE~n~~~GG~~~s   45 (445)
                      +|||||++||++|+.|.+.|.+ |+++|+++.+||.|..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~   39 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR   39 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence            7999999999999999999999 9999999999999874

...

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.28  E-value=8.3e-07  Score=91.91  Aligned_cols=41  Identities=32%  Similarity=0.484  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      ++|||||||+|.+|++||..|++.|++|+++|+ +.+||.|.
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~   42 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL   42 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence            359999999999999999999999999999999 78999875

>PRK08013 oxidoreductase; Provisional

Probab=98.28  E-value=8.4e-07  Score=90.14  Aligned_cols=38  Identities=24%  Similarity=0.369  Sum_probs=35.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      |+ ++||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         1 m~-~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~   38 (400)
T PRK08013          1 MQ-SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE   38 (400)
T ss_pred             CC-cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence            55 499999999999999999999999999999999864

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.28  E-value=7.5e-07  Score=89.99  Aligned_cols=36  Identities=22%  Similarity=0.398  Sum_probs=33.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      |+ .+||+|||||++||++|..|+++|++|+++|+.+
T Consensus         1 ~~-~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          1 MN-KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            77 4999999999999999999999999999999875

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.27  E-value=8.7e-07  Score=89.32  Aligned_cols=63  Identities=27%  Similarity=0.311  Sum_probs=48.3

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcC-cEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          225 IYPLYG---LGELPQAFARLSAVYG-GTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~G-g~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      ++|..|   ...+.+++++.+...| ..+..+++|..+..+ . +..+|.+++.++.|++||.+.+.+.
T Consensus       146 ~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~i~a~~vv~a~G~~~  212 (387)
T COG0665         146 FDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGTIEADKVVLAAGAWA  212 (387)
T ss_pred             ecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCccEEeCEEEEcCchHH
Confidence            456666   3468899999999999 566669999999773 3 5677777655599999999988663

>PRK07045 putative monooxygenase; Reviewed

Probab=98.26  E-value=8.8e-07  Score=89.56  Aligned_cols=39  Identities=28%  Similarity=0.453  Sum_probs=35.9

Q ss_pred             CC-CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            1 MD-EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         1 m~-~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      |. ..+||+|||||++||++|..|+++|++|+|+||++..
T Consensus         1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            44 6789999999999999999999999999999999854

>PRK13748 putative mercuric reductase; Provisional

Probab=98.25  E-value=9.1e-07  Score=93.93  Aligned_cols=42  Identities=21%  Similarity=0.302  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      ++|||||||||.+|++||..|++.|++|+++|++ .+||.|..
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n  138 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN  138 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence            4699999999999999999999999999999998 89998753

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.25  E-value=1e-06  Score=92.08  Aligned_cols=57  Identities=18%  Similarity=0.195  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~  290 (445)
                      ++.+.+.+.++..|.++++++.|.+|... ++.+.....+|+++.+|.||.+.+..|.
T Consensus       223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~-~~~~~v~~~~g~~i~~D~vl~a~G~~pn  279 (499)
T PTZ00052        223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM-DDKIKVLFSDGTTELFDTVLYATGRKPD  279 (499)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCeEEEEEEc-CCeEEEEECCCCEEEcCEEEEeeCCCCC
Confidence            46677778888899999999999999763 3333322347888999999998877664

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.25  E-value=9.4e-07  Score=90.92  Aligned_cols=35  Identities=20%  Similarity=0.384  Sum_probs=33.2

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .+|||+|||||++|++||..|+++|++|+++|++.
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            46999999999999999999999999999999985

>PRK06185 hypothetical protein; Provisional

Probab=98.24  E-value=9.9e-07  Score=89.74  Aligned_cols=38  Identities=24%  Similarity=0.336  Sum_probs=35.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      |.+++||+|||||++||++|..|+++|++|+++|+++.
T Consensus         3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            34679999999999999999999999999999999864

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.24  E-value=1e-06  Score=85.36  Aligned_cols=40  Identities=30%  Similarity=0.426  Sum_probs=36.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      |||+|||||++||+||..|++.|++|+++|+++ +||.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~   40 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT   40 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence            799999999999999999999999999999997 7887653

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.24  E-value=9.7e-07  Score=87.73  Aligned_cols=44  Identities=27%  Similarity=0.396  Sum_probs=41.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccch
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNL   48 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~   48 (445)
                      -+++|||||++|++||..||+.|++|.++||++..||+.+.++.
T Consensus       125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k  168 (622)
T COG1148         125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNK  168 (622)
T ss_pred             cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhc
Confidence            47999999999999999999999999999999999999887663

>PLN02661 Putative thiazole synthesis

Probab=98.23  E-value=1.1e-06  Score=86.20  Aligned_cols=39  Identities=28%  Similarity=0.403  Sum_probs=36.5

Q ss_pred             cccEEEECCChhHHHHHHHhhhC-CCeEEEEecCCCCCCc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVD-GLKVLHMDRNAYYGGE   42 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~n~~~GG~   42 (445)
                      ++||+|||+|++||+||+.|+++ |++|+++||+..+||.
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG  131 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG  131 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc
Confidence            58999999999999999999986 8999999999999873

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.23  E-value=1e-06  Score=90.00  Aligned_cols=58  Identities=28%  Similarity=0.361  Sum_probs=45.8

Q ss_pred             CcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCCCC
Q 036458          230 GLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPSYL  288 (445)
Q Consensus       230 G~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~~~  288 (445)
                      +...+.+.+.+.++++|++|+++++|+++.++ +++++|+..    +|+  +++|+.||.+.+-+
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~  202 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGF  202 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----B
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcc
Confidence            45678899999999999999999999999994 889999873    354  57899999887654

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.23  E-value=1.1e-06  Score=89.48  Aligned_cols=36  Identities=22%  Similarity=0.424  Sum_probs=33.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      |.+.+||+|||||++||++|..|+++|++|+|+|++
T Consensus         1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            455799999999999999999999999999999997

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.22  E-value=1.3e-06  Score=88.34  Aligned_cols=32  Identities=28%  Similarity=0.559  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      |||+|||||++|++||..|+++|++|+++|++
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            79999999999999999999999999999998

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.22  E-value=1.2e-06  Score=91.81  Aligned_cols=42  Identities=29%  Similarity=0.488  Sum_probs=38.5

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |.++||||||+| +||+||+.++++|.+|+||||++.+||.++
T Consensus         5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~   46 (513)
T PRK12837          5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA   46 (513)
T ss_pred             CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence            357899999999 999999999999999999999999998653

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.22  E-value=1.1e-06  Score=85.49  Aligned_cols=39  Identities=33%  Similarity=0.565  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCCCCcc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYYGGES   43 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~GG~~   43 (445)
                      ||+||||+|.+|+++|.+||++| ++|+|||+.+++....
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~   40 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED   40 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence            89999999999999999999998 6999999999887666

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.21  E-value=1.4e-06  Score=88.39  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      +||+|||||++|++||..|+++|++|+++||+...+.
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~   37 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAK   37 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence            6999999999999999999999999999999865543

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.20  E-value=1.5e-06  Score=88.84  Aligned_cols=45  Identities=29%  Similarity=0.472  Sum_probs=42.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      |..+||+||||+|.+|..||.++++.|++|.++|+...+||.|-.
T Consensus         1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln   45 (454)
T COG1249           1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN   45 (454)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence            677899999999999999999999999999999999999998854

>PRK14694 putative mercuric reductase; Provisional

Probab=98.20  E-value=1.5e-06  Score=90.24  Aligned_cols=57  Identities=9%  Similarity=0.172  Sum_probs=44.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~  290 (445)
                      .++.+.+.+.++..|.++++++.|++|..+ ++. ..+..+++++.+|.||.+.+..|.
T Consensus       218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~~~i~~D~vi~a~G~~pn  274 (468)
T PRK14694        218 PAVGEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNAGTLRAEQLLVATGRTPN  274 (468)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECCCEEEeCEEEEccCCCCC
Confidence            467788888888999999999999999763 433 335555567999999998876653

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.19  E-value=1.4e-06  Score=87.69  Aligned_cols=55  Identities=15%  Similarity=0.059  Sum_probs=41.3

Q ss_pred             hHHHHHHHHHHHcC-cEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 036458          233 ELPQAFARLSAVYG-GTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL  288 (445)
Q Consensus       233 ~L~q~l~r~~~~~G-g~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~  288 (445)
                      .+.+.|.+.+...| ++++.+++|++|..+ ++.+.....+|+++.||.||.+.+..
T Consensus       107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~v~~~~g~~~~~~~vi~adG~~  162 (385)
T TIGR01988       107 VLQQALWERLQEYPNVTLLCPARVVELPRH-SDHVELTLDDGQQLRARLLVGADGAN  162 (385)
T ss_pred             HHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCeeEEEECCCCEEEeeEEEEeCCCC
Confidence            45666777777777 899999999999874 45443223578889999999877654

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.19  E-value=2e-05  Score=81.20  Aligned_cols=55  Identities=20%  Similarity=0.280  Sum_probs=41.2

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSY  287 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~  287 (445)
                      ..+-+.|.+.+...|++++.++ |+++..+++|.+.+|+. +|++++||.||=+.+.
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~  209 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGR  209 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGG
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCc
Confidence            4566778888889999998774 88888777888888875 7889999999976553

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.19  E-value=1.6e-06  Score=87.51  Aligned_cols=38  Identities=32%  Similarity=0.421  Sum_probs=35.4

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      ..+||+|||||++||++|..|++.|++|+|+||++.+.
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~   41 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR   41 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence            46899999999999999999999999999999998754

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.19  E-value=1.5e-06  Score=92.34  Aligned_cols=43  Identities=28%  Similarity=0.526  Sum_probs=39.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      ++.++||||||+|++||+||..++++|.+|+||||++..||.+
T Consensus         8 ~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t   50 (584)
T PRK12835          8 FDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST   50 (584)
T ss_pred             ccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence            3567999999999999999999999999999999999999853

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.18  E-value=1.4e-06  Score=88.09  Aligned_cols=36  Identities=22%  Similarity=0.358  Sum_probs=33.8

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      +.|||+|||||++||++|..|+++|++|+++|+++.
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~   39 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP   39 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence            569999999999999999999999999999999863

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.18  E-value=1.7e-06  Score=95.74  Aligned_cols=42  Identities=21%  Similarity=0.240  Sum_probs=39.6

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      .++|+|||||++||+||+.|++.|++|+|+|+++.+||..+.
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~  578 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN  578 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence            579999999999999999999999999999999999999753

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.17  E-value=1.9e-06  Score=91.21  Aligned_cols=42  Identities=31%  Similarity=0.500  Sum_probs=39.5

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      +.++||||||+|.+|++||..|+++|.+|+||||++.+||.+
T Consensus         4 d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~   45 (557)
T PRK12844          4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST   45 (557)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence            457999999999999999999999999999999999999965

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.17  E-value=1.7e-06  Score=88.02  Aligned_cols=44  Identities=25%  Similarity=0.277  Sum_probs=41.2

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSL   46 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~   46 (445)
                      ...+|+|||||.+||++|..|.++|++|+++||.+.+||.|.--
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~   48 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT   48 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence            46799999999999999999999999999999999999999754

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.16  E-value=2.5e-06  Score=90.25  Aligned_cols=37  Identities=24%  Similarity=0.323  Sum_probs=34.7

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      .++||+|||||++||++|..|++.|++|+|+||++.+
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~   58 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL   58 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            5689999999999999999999999999999999854

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.16  E-value=2.1e-06  Score=91.99  Aligned_cols=60  Identities=22%  Similarity=0.232  Sum_probs=47.8

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCcceeEEEcC-CCcEEEEEe----CCe--EEEcCEEEECCCCCCc
Q 036458          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDG-DGKVIGVTS----EGE--TAKCKKVVCDPSYLPD  290 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~-~g~~~~v~~----~g~--~~~ad~VI~~~~~~p~  290 (445)
                      -..+..++++.++..|++++.+++|++|..++ ++++++|..    +++  ++.||.||.+++.|.+
T Consensus       231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~  297 (627)
T PLN02464        231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD  297 (627)
T ss_pred             HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence            34688889999999999999999999998743 467777652    344  6899999999988854

>TIGR02053 MerA mercuric reductase

Probab=98.16  E-value=1.9e-06  Score=89.33  Aligned_cols=39  Identities=23%  Similarity=0.444  Sum_probs=36.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |||||||+|.+|++||..|++.|++|+++|++. +||.|-
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~   39 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV   39 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence            799999999999999999999999999999986 888764

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PTZ00058 glutathione reductase; Provisional

Probab=98.16  E-value=2e-06  Score=90.71  Aligned_cols=42  Identities=26%  Similarity=0.440  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      .+|||||||+|.+|+.||..+++.|++|+++|++ .+||.|-.
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln   88 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN   88 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence            4699999999999999999999999999999996 79998743

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.16  E-value=1.7e-06  Score=87.95  Aligned_cols=56  Identities=9%  Similarity=-0.027  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      .+-++|.+.++..|++++.+++|++|..+ ++.+.....+|++++||.||.+.+...
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~~g~~~~a~~vVgAdG~~S  168 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRS-GDDWLLTLADGRQLRAPLVVAADGANS  168 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEc-CCeEEEEECCCCEEEeCEEEEecCCCc
Confidence            44556666666778999999999999874 444432235778899999999877653

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.16  E-value=2.2e-06  Score=91.17  Aligned_cols=42  Identities=24%  Similarity=0.424  Sum_probs=39.5

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      .++||||||+|++||+||..++++|.+|+++||++..||..+
T Consensus         8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~   49 (574)
T PRK12842          8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA   49 (574)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence            468999999999999999999999999999999999998764

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.15  E-value=5.6e-05  Score=75.83  Aligned_cols=56  Identities=21%  Similarity=0.275  Sum_probs=44.1

Q ss_pred             cchHHHHHHHHHHHc-CcEEEeCCcceeEEEcCCCcEEE-EE--e--CCeEEEcCEEEECCC
Q 036458          231 LGELPQAFARLSAVY-GGTYMLNKPECKVEFDGDGKVIG-VT--S--EGETAKCKKVVCDPS  286 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~-Gg~i~l~~~V~~I~~~~~g~~~~-v~--~--~g~~~~ad~VI~~~~  286 (445)
                      .|+|.+.|.+.+... |.+++++++|++|.+..+|.... +.  .  +..++.|+.|++.++
T Consensus       180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAG  241 (488)
T PF06039_consen  180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAG  241 (488)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCc
Confidence            789999999988877 88999999999999976775432 22  1  336899999998664

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.15  E-value=2.2e-06  Score=88.26  Aligned_cols=57  Identities=23%  Similarity=0.193  Sum_probs=45.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe---CCe--EEEcCEEEECCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS---EGE--TAKCKKVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~---~g~--~~~ad~VI~~~~~~  288 (445)
                      .++.+.|.+.++..|++++++++|++|..++++++++|..   +++  .+.++.||.+.+-+
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~  191 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGF  191 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCC
Confidence            4688899999999999999999999999865678887753   343  47899999877644

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.15  E-value=2e-06  Score=95.67  Aligned_cols=41  Identities=24%  Similarity=0.323  Sum_probs=39.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      ..+|+|||+|++||+||..|+++|++|+|+|+++.+||..+
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence            47899999999999999999999999999999999999865

>PRK06184 hypothetical protein; Provisional

Probab=98.14  E-value=2.4e-06  Score=89.44  Aligned_cols=38  Identities=18%  Similarity=0.269  Sum_probs=35.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      |. ++||+|||||++||++|..|+++|.+|+|+||++.+
T Consensus         1 ~~-~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~   38 (502)
T PRK06184          1 YT-TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP   38 (502)
T ss_pred             CC-CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            44 589999999999999999999999999999999765

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.14  E-value=2.2e-06  Score=87.98  Aligned_cols=42  Identities=21%  Similarity=0.322  Sum_probs=38.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      |..++||||||+|.+||+||..++ +|.+|+++||.+..||..
T Consensus         1 m~~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s   42 (433)
T PRK06175          1 MNLYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNT   42 (433)
T ss_pred             CCccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCch
Confidence            777899999999999999999975 799999999999988753

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.13  E-value=2.3e-06  Score=86.46  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=34.6

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      ||||||||++|+++|+.|+++|++|+++|+++..||.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~   37 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN   37 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence            8999999999999999999999999999999877753

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.12  E-value=2.3e-06  Score=86.59  Aligned_cols=35  Identities=20%  Similarity=0.426  Sum_probs=33.3

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            47999999999999999999999999999999984

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK12831 putative oxidoreductase; Provisional

Probab=98.12  E-value=2.8e-06  Score=87.95  Aligned_cols=42  Identities=24%  Similarity=0.252  Sum_probs=39.5

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +..||+|||+|++||+||..|++.|++|+++|+++.+||.+.
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            457999999999999999999999999999999999999874

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.12  E-value=3.8e-06  Score=88.73  Aligned_cols=37  Identities=30%  Similarity=0.458  Sum_probs=34.9

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      .+||+|||+|++||++|..|++.|++|+|+||++.++
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~   46 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY   46 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            6899999999999999999999999999999998664

>PRK14727 putative mercuric reductase; Provisional

Probab=98.10  E-value=2.8e-06  Score=88.39  Aligned_cols=43  Identities=16%  Similarity=0.240  Sum_probs=40.4

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      .+|||||||+|.+|+++|..|++.|++|+++|+++.+||.|..
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n   57 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN   57 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence            3599999999999999999999999999999999999999864

>PRK07236 hypothetical protein; Provisional

Probab=98.10  E-value=3e-06  Score=85.69  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=33.2

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..||+|||||++||++|..|+++|++|+|+||++.
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            48999999999999999999999999999999864

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.09  E-value=2.9e-06  Score=85.48  Aligned_cols=56  Identities=13%  Similarity=0.027  Sum_probs=41.5

Q ss_pred             chHHHHHHHHHHH-cCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 036458          232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~-~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~  288 (445)
                      .++.+.|.+.+.. .|++++++++|++|..+ ++.+.....+|+++.||.||.+.+..
T Consensus       105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~v~~~~g~~~~ad~vV~AdG~~  161 (382)
T TIGR01984       105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN-QDYVRVTLDNGQQLRAKLLIAADGAN  161 (382)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc-CCeEEEEECCCCEEEeeEEEEecCCC
Confidence            3566777777776 48999999999999874 44443333577789999999987754

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK12839 hypothetical protein; Provisional

Probab=98.09  E-value=3.6e-06  Score=89.18  Aligned_cols=44  Identities=30%  Similarity=0.512  Sum_probs=40.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |+.++||+|||+|.+|++||+.|+++|.+|+++||+...||.+.
T Consensus         5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~   48 (572)
T PRK12839          5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA   48 (572)
T ss_pred             cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence            34679999999999999999999999999999999999999765

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=3.5e-06  Score=81.91  Aligned_cols=45  Identities=29%  Similarity=0.352  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN   47 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~   47 (445)
                      +.|||||||+|++||+||.+++|+|.++.+++....+||......
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~   46 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT   46 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence            469999999999999999999999999777777778887766555

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.06  E-value=3.9e-06  Score=84.94  Aligned_cols=36  Identities=36%  Similarity=0.465  Sum_probs=33.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhC---CCeEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVD---GLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~---G~~VlvlE~n~   37 (445)
                      |+ .+||+|||||++||++|..|+++   |.+|+|+||+.
T Consensus         1 m~-~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~   39 (395)
T PRK05732          1 MS-RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA   39 (395)
T ss_pred             CC-cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence            54 59999999999999999999998   99999999963

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.06  E-value=4.4e-06  Score=88.57  Aligned_cols=43  Identities=26%  Similarity=0.414  Sum_probs=38.9

Q ss_pred             CC-CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            1 MD-EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         1 m~-~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      |+ .++||||||+|++||.||..++++|.+|+++||....||.+
T Consensus         1 ~~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s   44 (566)
T PRK06452          1 MEKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHS   44 (566)
T ss_pred             CCcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence            66 46899999999999999999999999999999998877744

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.05  E-value=4.5e-06  Score=88.40  Aligned_cols=42  Identities=26%  Similarity=0.594  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +++||+|||+|.+|++||..++++|.+|++|||++.+||.++
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~   47 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA   47 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence            579999999999999999999999999999999999998653

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.05  E-value=3.9e-06  Score=86.31  Aligned_cols=34  Identities=32%  Similarity=0.495  Sum_probs=32.0

Q ss_pred             ccEEEECCChhHHHHHHHhhh----CCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSV----DGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~----~G~~VlvlE~n~~   38 (445)
                      |||+|||||++||++|..|++    +|++|+|+|+++.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~   38 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN   38 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence            799999999999999999999    8999999999654

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PLN02507 glutathione reductase

Probab=98.05  E-value=4.5e-06  Score=87.22  Aligned_cols=58  Identities=17%  Similarity=0.156  Sum_probs=43.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~  290 (445)
                      .++.+.+.+.++..|.++++++.|++|..+ ++.+.....+|+++.+|.||.+.+..|.
T Consensus       244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~~v~~~~g~~i~~D~vl~a~G~~pn  301 (499)
T PLN02507        244 DEMRAVVARNLEGRGINLHPRTNLTQLTKT-EGGIKVITDHGEEFVADVVLFATGRAPN  301 (499)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCeEEEEECCCcEEEcCEEEEeecCCCC
Confidence            356666777788899999999999999863 3433323346788999999998877654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.05  E-value=4.5e-06  Score=86.75  Aligned_cols=58  Identities=24%  Similarity=0.325  Sum_probs=44.6

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p~  290 (445)
                      .++.+.+.+.++..|.++++++.|++|..++++. ..+. .+|+++.+|.||.+.+..|.
T Consensus       231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn  289 (486)
T TIGR01423       231 STLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPR  289 (486)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCcC
Confidence            4677788888888999999999999998643432 3343 46778999999998776653

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.05  E-value=3.8e-06  Score=84.55  Aligned_cols=33  Identities=18%  Similarity=0.405  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +||+|||||++|+++|..|+++|++|+|+|+++
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            799999999999999999999999999999975

>PRK06753 hypothetical protein; Provisional

Probab=98.04  E-value=4.2e-06  Score=84.06  Aligned_cols=35  Identities=17%  Similarity=0.369  Sum_probs=33.1

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      ||+|||||++||++|..|+++|++|+|+||++.+.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~   36 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK   36 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence            79999999999999999999999999999998753

>PLN02463 lycopene beta cyclase

Probab=98.03  E-value=4.6e-06  Score=85.63  Aligned_cols=36  Identities=25%  Similarity=0.358  Sum_probs=33.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|||+|||||++||++|..|+++|++|+++|+++.
T Consensus        27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~   62 (447)
T PLN02463         27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL   62 (447)
T ss_pred             cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence            358999999999999999999999999999999753

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.03  E-value=5.1e-06  Score=87.63  Aligned_cols=40  Identities=25%  Similarity=0.374  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      .++||+|||+|++||.||..++++|.+|+++||....||.
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~   54 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS   54 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence            4689999999999999999999999999999999988774

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.03  E-value=5.3e-06  Score=91.59  Aligned_cols=43  Identities=23%  Similarity=0.278  Sum_probs=39.8

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      +..+|+|||+|.+||+||..|++.|++|+|+|+++.+||.++.
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence            3468999999999999999999999999999999999998753

>PRK08244 hypothetical protein; Provisional

Probab=98.03  E-value=4.7e-06  Score=87.05  Aligned_cols=36  Identities=28%  Similarity=0.490  Sum_probs=33.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      ++||+|||||++||++|..|++.|.+|+|+||++.+
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~   37 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET   37 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            489999999999999999999999999999998653

>PRK06126 hypothetical protein; Provisional

Probab=98.02  E-value=5.1e-06  Score=87.95  Aligned_cols=36  Identities=19%  Similarity=0.285  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .++||+|||||++||++|..|++.|++|+|+||++.
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            458999999999999999999999999999999863

>PRK02106 choline dehydrogenase; Validated

Probab=98.02  E-value=5e-06  Score=88.22  Aligned_cols=38  Identities=29%  Similarity=0.560  Sum_probs=35.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhh-CCCeEEEEecCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSV-DGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~-~G~~VlvlE~n~~   38 (445)
                      |..+||+||||+|.+|+++|.+||+ .|++|+|||+.+.
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            5678999999999999999999999 8999999999965

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.01  E-value=5.1e-06  Score=84.33  Aligned_cols=57  Identities=16%  Similarity=0.100  Sum_probs=43.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      ..+.+.|.+.+...|++++.+++|++|..+ ++.+.....+|+++.||.||.+.+..+
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~~g~~~~ad~vI~AdG~~S  167 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETR-DEGVTVTLSDGSVLEARLLVAADGARS  167 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEEEEEECCCCEEEeCEEEEcCCCCh
Confidence            356677777777789999999999999874 444433335788899999999877653

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.01  E-value=4.1e-05  Score=78.92  Aligned_cols=57  Identities=18%  Similarity=0.157  Sum_probs=45.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~  290 (445)
                      .++.+.+.+.++..|.+++++++|++|..  ++++..+..+++++.||.||.+++..|.
T Consensus       191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~~i~~d~vi~a~G~~p~  247 (444)
T PRK09564        191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKGEYEADVVIVATGVKPN  247 (444)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCCEEEcCEEEECcCCCcC
Confidence            45777777888899999999999999954  4455566667778999999999887663

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.00  E-value=6.2e-06  Score=89.07  Aligned_cols=42  Identities=31%  Similarity=0.426  Sum_probs=39.2

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +..+|+|||+|++||+||..|++.|++|+|+|+++.+||..+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~  367 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT  367 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence            357999999999999999999999999999999999999864

>PRK11445 putative oxidoreductase; Provisional

Probab=98.00  E-value=5.6e-06  Score=82.61  Aligned_cols=35  Identities=29%  Similarity=0.538  Sum_probs=32.8

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      .|||+|||+|++||++|..|+++ ++|+++|+++..
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~   35 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC   35 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence            38999999999999999999999 999999999864

>PRK06834 hypothetical protein; Provisional

Probab=98.00  E-value=6.6e-06  Score=85.68  Aligned_cols=36  Identities=25%  Similarity=0.483  Sum_probs=33.9

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      +.+||+|||+|++||++|..|+++|.+|+|+||++.
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            358999999999999999999999999999999975

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.99  E-value=6.2e-06  Score=86.36  Aligned_cols=41  Identities=24%  Similarity=0.293  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      ..|+|||||.+||++|..|.+.|.+|+++||++.+||.|+-
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~   42 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY   42 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence            46999999999999999999999999999999999999963

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PTZ00367 squalene epoxidase; Provisional

Probab=97.99  E-value=5.8e-06  Score=87.19  Aligned_cols=35  Identities=40%  Similarity=0.655  Sum_probs=33.0

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..+||||||||++|+++|..|+++|++|+|+||+.
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            35899999999999999999999999999999985

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.99  E-value=6.9e-06  Score=78.21  Aligned_cols=40  Identities=35%  Similarity=0.582  Sum_probs=35.6

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC--CCCcc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY--YGGES   43 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~--~GG~~   43 (445)
                      .+||||||+|++||.||+.||.+|++|+++|+...  +||.+
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA   46 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA   46 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence            58999999999999999999999999999987653  66654

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.99  E-value=7e-06  Score=84.69  Aligned_cols=42  Identities=24%  Similarity=0.233  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +.++|+|||+|.+||++|..|++.|++|+++|+++.+||.+.
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            457999999999999999999999999999999999999763

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.98  E-value=6.6e-06  Score=92.65  Aligned_cols=43  Identities=26%  Similarity=0.347  Sum_probs=40.2

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      ..+||+|||||++||+||.+|++.|++|+++|+++.+||.+..
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            3689999999999999999999999999999999999998753

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.98  E-value=6.9e-06  Score=88.13  Aligned_cols=38  Identities=21%  Similarity=0.385  Sum_probs=35.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhh-CCCeEEEEecCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSV-DGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~-~G~~VlvlE~n~~   38 (445)
                      |.+++||+|||||++||++|..|++ .|.+|+|+|+++.
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            5678999999999999999999999 5999999999864

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.98  E-value=7.4e-06  Score=82.28  Aligned_cols=37  Identities=22%  Similarity=0.436  Sum_probs=34.8

Q ss_pred             cEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCCc
Q 036458            6 DVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGGE   42 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG~   42 (445)
                      ||+|||||++||++|+.|+++  |++|+++|+++..||.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~   39 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN   39 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence            899999999999999999987  9999999999987764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.98  E-value=8.1e-06  Score=82.96  Aligned_cols=35  Identities=14%  Similarity=0.184  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      -+|+|||||++||++|..|+++|++|+|+||++.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            47999999999999999999999999999998754

>PRK07538 hypothetical protein; Provisional

Probab=97.98  E-value=6.5e-06  Score=84.00  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=32.2

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      ||+|||||++||++|..|+++|++|+|+||++.+
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            7999999999999999999999999999998754

>PLN02697 lycopene epsilon cyclase

Probab=97.98  E-value=7.7e-06  Score=85.42  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=33.0

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|||+|||+|++||++|..|++.|++|+++|+...
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p  142 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP  142 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCccc
Confidence            469999999999999999999999999999998633

>PLN02546 glutathione reductase

Probab=97.97  E-value=7.7e-06  Score=86.26  Aligned_cols=42  Identities=21%  Similarity=0.236  Sum_probs=37.9

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecC---------CCCCCcccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN---------AYYGGESTS   45 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n---------~~~GG~~~s   45 (445)
                      +|||+|||+|.+|..||..|++.|++|+++|++         ..+||.|-.
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n  129 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL  129 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC
Confidence            599999999999999999999999999999973         578997753

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.97  E-value=7e-06  Score=92.19  Aligned_cols=42  Identities=19%  Similarity=0.136  Sum_probs=39.2

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +..+|+|||||++||+||..|++.|++|+|+|+.+++||..+
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~  470 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ  470 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence            357999999999999999999999999999999999999764

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.97  E-value=7.6e-06  Score=87.54  Aligned_cols=55  Identities=16%  Similarity=0.267  Sum_probs=44.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS  286 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~  286 (445)
                      ..|.+.|.+.+...|++++.++.|+++..+++|++.||..    +|+  .+.|+.||.+.+
T Consensus       166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  226 (617)
T PTZ00139        166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATG  226 (617)
T ss_pred             HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence            3688888888888999999999999998745788988862    453  678999998653

>PRK10262 thioredoxin reductase; Provisional

Probab=97.95  E-value=8.7e-06  Score=80.15  Aligned_cols=42  Identities=17%  Similarity=0.243  Sum_probs=37.5

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      +.+||+|||+|++||.||..|++.|++|+++|+. ..||.+..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~   46 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT   46 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence            4689999999999999999999999999999965 67887654

>PRK07588 hypothetical protein; Provisional

Probab=97.95  E-value=7.6e-06  Score=82.82  Aligned_cols=34  Identities=21%  Similarity=0.210  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .||+|||||++||++|..|+++|++|+++||.+.
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            3799999999999999999999999999999864

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.94  E-value=0.0002  Score=71.42  Aligned_cols=57  Identities=25%  Similarity=0.381  Sum_probs=47.8

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCC
Q 036458          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYL  288 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~  288 (445)
                      +-.+.+.+.+.+..+|++|++++.|.+|.. +++.+.+|. ++|+++.||+||.+++--
T Consensus       172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Grs  229 (486)
T COG2509         172 LPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGRS  229 (486)
T ss_pred             hHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCcc
Confidence            456678888889999999999999999998 566666776 578899999999998743

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.94  E-value=1e-05  Score=79.51  Aligned_cols=44  Identities=25%  Similarity=0.403  Sum_probs=37.2

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN   47 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~   47 (445)
                      +-+||||||||+||++|..|+|.|.+|+|+|++.-+=|.-++++
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~   45 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSIN   45 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCccee
Confidence            45899999999999999999999999999999877655544433

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.94  E-value=9.1e-06  Score=86.58  Aligned_cols=40  Identities=23%  Similarity=0.174  Sum_probs=36.9

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      ++||||||+|++||+||..++++|.+|+|+||....||.+
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s   42 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHS   42 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcc
Confidence            5799999999999999999999999999999999877743

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.94  E-value=9.6e-06  Score=89.03  Aligned_cols=42  Identities=24%  Similarity=0.311  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      ...+|+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            457999999999999999999999999999999999999864

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.94  E-value=9.1e-06  Score=85.37  Aligned_cols=40  Identities=23%  Similarity=0.435  Sum_probs=36.7

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      ..|||+|||||++|++||.+|++.|++|+++|+.  +||.+.
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~  249 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL  249 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee
Confidence            3589999999999999999999999999999864  999875

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.93  E-value=9.2e-06  Score=87.11  Aligned_cols=39  Identities=23%  Similarity=0.301  Sum_probs=36.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      ++||||||+|++||.||..++++|.+|+++||+...||.
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~   46 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH   46 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence            589999999999999999999999999999999876653

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.93  E-value=9.6e-06  Score=81.64  Aligned_cols=34  Identities=35%  Similarity=0.461  Sum_probs=32.7

Q ss_pred             cEEEECCChhHHHHHHHh--hhCCCeEEEEecCCCC
Q 036458            6 DVIVLGTGLKECILSGVL--SVDGLKVLHMDRNAYY   39 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~L--a~~G~~VlvlE~n~~~   39 (445)
                      ||||||+|++||++|.+|  ++.|++|+++|++..+
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            899999999999999999  8899999999999887

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.93  E-value=9.5e-06  Score=86.86  Aligned_cols=42  Identities=29%  Similarity=0.425  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecC-CCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN-AYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n-~~~GG~~~   44 (445)
                      .+|||||||+|.+|..||..+++.|++|+++|+. +.+||.|-
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv  157 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV  157 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence            3799999999999999999999999999999984 47999874

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.93  E-value=1.1e-05  Score=83.84  Aligned_cols=41  Identities=27%  Similarity=0.315  Sum_probs=38.6

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      .++|+|||+|.+||++|..|++.|++|+++|+++++||...
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            47999999999999999999999999999999999999754

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.93  E-value=9.1e-06  Score=85.84  Aligned_cols=55  Identities=7%  Similarity=0.111  Sum_probs=42.4

Q ss_pred             chHHHHHHHHHHHc-CcEEEeCCcceeEEEcC-CCcEEEEEe--CCe--EEEcCEEEECCC
Q 036458          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDG-DGKVIGVTS--EGE--TAKCKKVVCDPS  286 (445)
Q Consensus       232 ~~L~q~l~r~~~~~-Gg~i~l~~~V~~I~~~~-~g~~~~v~~--~g~--~~~ad~VI~~~~  286 (445)
                      ..+..+|.+.++.. |+++++++.|+++..++ +|+++|+..  +|+  .+.|+.||++.+
T Consensus       134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATG  194 (553)
T PRK07395        134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATG  194 (553)
T ss_pred             HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCC
Confidence            46788888877654 89999999999998853 378888863  454  478999998754

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.93  E-value=9.2e-06  Score=87.05  Aligned_cols=55  Identities=11%  Similarity=0.209  Sum_probs=44.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS  286 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~  286 (445)
                      .+|.++|.+.+...|.+++.++.++++..+++|++.|+..    +|+  .+.|+.||.+.+
T Consensus       187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG  247 (635)
T PLN00128        187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATG  247 (635)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCC
Confidence            3678888888878899999999999988754678888863    453  678999998754

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.92  E-value=9.5e-06  Score=86.57  Aligned_cols=54  Identities=15%  Similarity=0.231  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS  286 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~  286 (445)
                      .|.++|.+.+...|++++.++.|+++..+++|+++||..    +|+  .+.|+.||++.+
T Consensus       150 ~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  209 (598)
T PRK09078        150 AILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATG  209 (598)
T ss_pred             HHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCC
Confidence            588888888888899999999999999854478988863    453  688999998764

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.92  E-value=1.1e-05  Score=85.94  Aligned_cols=55  Identities=18%  Similarity=0.288  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS  286 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~  286 (445)
                      ..|.+.|.+.+...|.+++.++.|+++..+++|++.||..    +|+  .+.|+.||.+.+
T Consensus       148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG  208 (591)
T PRK07057        148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATG  208 (591)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCC
Confidence            3588888888888899999999999999854678888853    343  578999998754

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.91  E-value=1e-05  Score=86.89  Aligned_cols=40  Identities=28%  Similarity=0.297  Sum_probs=36.8

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      ++||+|||+|++||+||..++++|.+|+|+||+..+|+..
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~   74 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAH   74 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcch
Confidence            5899999999999999999999999999999998887543

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.90  E-value=1.1e-05  Score=85.97  Aligned_cols=35  Identities=20%  Similarity=0.396  Sum_probs=33.1

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +..+|+|||||++||++|..|+++|++|+|+||++
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            45899999999999999999999999999999975

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.90  E-value=1.2e-05  Score=83.88  Aligned_cols=39  Identities=28%  Similarity=0.363  Sum_probs=37.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      |||+|||+|++|+++|..|+++|++|+++|+....||.+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence            799999999999999999999999999999999999865

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.90  E-value=1.3e-05  Score=80.70  Aligned_cols=37  Identities=22%  Similarity=0.164  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      .||+|||||++||.||+.|++.|++|+++|+++...-
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s   39 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT   39 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence            5899999999999999999999999999998876543

>PRK05868 hypothetical protein; Validated

Probab=97.89  E-value=1.2e-05  Score=81.00  Aligned_cols=35  Identities=20%  Similarity=0.218  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      .||+|||+|++||++|..|+++|++|+|+|+++..
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            38999999999999999999999999999998764

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.89  E-value=1.4e-05  Score=82.54  Aligned_cols=42  Identities=26%  Similarity=0.217  Sum_probs=38.9

Q ss_pred             cccEEEECCChhHHHHHHHhhh--CCCeEEEEecCCCCCCcccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSV--DGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~--~G~~VlvlE~n~~~GG~~~s   45 (445)
                      ..+|+|||+|++||.||..|++  .|++|+|+|+.+.+||..+.
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            4689999999999999999987  79999999999999998864

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.88  E-value=1.3e-05  Score=86.37  Aligned_cols=41  Identities=24%  Similarity=0.251  Sum_probs=38.8

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      ..+|+|||+|++||++|..|++.|++|+++|+++++||.+.
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            46899999999999999999999999999999999999864

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.88  E-value=1.3e-05  Score=86.41  Aligned_cols=43  Identities=21%  Similarity=0.229  Sum_probs=38.3

Q ss_pred             CCC-cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            1 MDE-DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         1 m~~-~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      |++ ++||+|||+|++||.||..++++|.+|+|+||.+..||.+
T Consensus         1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~s   44 (657)
T PRK08626          1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHS   44 (657)
T ss_pred             CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcch
Confidence            553 5899999999999999999999999999999998877643

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.88  E-value=1.3e-05  Score=81.72  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=32.0

Q ss_pred             cEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYYG   40 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~G   40 (445)
                      +|+|||||++||++|..|+++| .+|+|+||++.++
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~   37 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG   37 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence            6999999999999999999998 5999999987654

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PLN02815 L-aspartate oxidase

Probab=97.87  E-value=1.3e-05  Score=85.13  Aligned_cols=39  Identities=15%  Similarity=0.278  Sum_probs=36.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      ++||+|||+|++||.||..++++| +|+|+||....||..
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s   67 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT   67 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence            589999999999999999999999 899999999988843

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.86  E-value=1.6e-05  Score=85.69  Aligned_cols=42  Identities=29%  Similarity=0.362  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +..+|+|||+|++||++|..|++.|++|+++|+++.+||.++
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~  350 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT  350 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence            357899999999999999999999999999999999999864

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.86  E-value=1.3e-05  Score=85.30  Aligned_cols=55  Identities=16%  Similarity=0.169  Sum_probs=44.2

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPSY  287 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~~  287 (445)
                      ..|.+.|.+.+...|.+++.++.|+++.. ++|++.|+..    +|+  .+.|+.||.+.+-
T Consensus       135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG  195 (575)
T PRK05945        135 HAILHELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGG  195 (575)
T ss_pred             HHHHHHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCC
Confidence            46888898888888999999999999988 4788887752    453  5899999987653

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.86  E-value=1.5e-05  Score=84.82  Aligned_cols=53  Identities=25%  Similarity=0.308  Sum_probs=43.1

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS  286 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~  286 (445)
                      .+.+.|.+.+...|++++.++.|++|..+ +|++.|+..    +|+  .+.|+.||.+.+
T Consensus       130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG  188 (566)
T TIGR01812       130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATG  188 (566)
T ss_pred             HHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCC
Confidence            57788888887889999999999999984 788888752    454  589999998765

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.86  E-value=2.6e-05  Score=78.71  Aligned_cols=63  Identities=29%  Similarity=0.354  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCCCCCcccccc
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPSYLPDKVQKV  295 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~~~p~~~~~~  295 (445)
                      .+.-+++=-++.+|+++.-..+|.++..++++++.|++.    .|+  .|+|+.||.+.+++.+..+++
T Consensus       225 Rmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~M  293 (680)
T KOG0042|consen  225 RMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKM  293 (680)
T ss_pred             HHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhh
Confidence            355555555678899999999999999887888877753    454  578999999999887665543

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.85  E-value=1.7e-05  Score=82.12  Aligned_cols=41  Identities=22%  Similarity=0.246  Sum_probs=38.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      .++|+|||+|.+||++|..|++.|++|+++|+++++||...
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            47899999999999999999999999999999999999753

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.85  E-value=1.5e-05  Score=80.66  Aligned_cols=36  Identities=22%  Similarity=0.186  Sum_probs=33.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      ||+|||||++||.||..|++.|++|+++|+++..|-
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~   37 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT   37 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence            799999999999999999999999999999887655

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.85  E-value=1.6e-05  Score=84.72  Aligned_cols=43  Identities=23%  Similarity=0.358  Sum_probs=38.4

Q ss_pred             CCC-cccEEEECCChhHHHHHHHhhhCC---CeEEEEecCCCCCCcc
Q 036458            1 MDE-DYDVIVLGTGLKECILSGVLSVDG---LKVLHMDRNAYYGGES   43 (445)
Q Consensus         1 m~~-~~DViIIGaGl~Gl~aA~~La~~G---~~VlvlE~n~~~GG~~   43 (445)
                      |+. ++||+|||+|++||+||..++++|   .+|+++||+...||.+
T Consensus         1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s   47 (577)
T PRK06069          1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS   47 (577)
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence            453 589999999999999999999998   8999999999887744

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.84  E-value=1.9e-05  Score=81.91  Aligned_cols=42  Identities=29%  Similarity=0.422  Sum_probs=39.2

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +..+|+|||+|.+||++|..|++.|++|+++|+++.+||..+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~  181 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT  181 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            357899999999999999999999999999999999999764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.84  E-value=1.7e-05  Score=83.22  Aligned_cols=39  Identities=26%  Similarity=0.413  Sum_probs=36.1

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      .|||+|||||.+|++||.+|++.|++|+++|.  ++||.+.
T Consensus       212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~  250 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK  250 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence            59999999999999999999999999999985  6999875

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR00551 nadB L-aspartate oxidase

Probab=97.84  E-value=1.7e-05  Score=82.71  Aligned_cols=56  Identities=16%  Similarity=0.156  Sum_probs=43.6

Q ss_pred             chHHHHHHHHHHH-cCcEEEeCCcceeEEEcCCCcEEEEEe--CC--eEEEcCEEEECCCCC
Q 036458          232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDGDGKVIGVTS--EG--ETAKCKKVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~-~Gg~i~l~~~V~~I~~~~~g~~~~v~~--~g--~~~~ad~VI~~~~~~  288 (445)
                      ..|.+.|.+.++. .|.+++.++.|++|..+ ++++.++..  .+  ..+.|+.||.+.+-+
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~  188 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGA  188 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCcc
Confidence            4688888888876 58999999999999874 677887763  23  468999999876543

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.83  E-value=1.5e-05  Score=84.00  Aligned_cols=36  Identities=33%  Similarity=0.625  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      |..+||+||||+|.+|+++|..|+..|++|++||+.
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG   39 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG   39 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence            557899999999999999999999999999999997

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.81  E-value=1.8e-05  Score=90.46  Aligned_cols=41  Identities=32%  Similarity=0.494  Sum_probs=38.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      ++||||||+|.+||+||...+++|.+|+++||.+..||.++
T Consensus       409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~  449 (1167)
T PTZ00306        409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA  449 (1167)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence            58999999999999999999999999999999999999753

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.80  E-value=2.1e-05  Score=83.71  Aligned_cols=55  Identities=16%  Similarity=0.115  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCC---CcEEEEEe----CCe--EEEcCEEEECCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGD---GKVIGVTS----EGE--TAKCKKVVCDPS  286 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~---g~~~~v~~----~g~--~~~ad~VI~~~~  286 (445)
                      ..|.+.|.+.+...|.+++.++.|++|..+++   |++.|+..    +|+  .+.|+.||.+.+
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  203 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATG  203 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCC
Confidence            46788888888888999999999999987532   78888853    454  578999998754

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.79  E-value=1.9e-05  Score=78.72  Aligned_cols=38  Identities=34%  Similarity=0.409  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEE-ecCCCCCCcc
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHM-DRNAYYGGES   43 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~Vlvl-E~n~~~GG~~   43 (445)
                      ||||||||++||.||+.+|+.|.+|+++ ++.+.+|...
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~   39 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS   39 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc
Confidence            8999999999999999999999999999 5555555443

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.78  E-value=2.4e-05  Score=81.40  Aligned_cols=41  Identities=32%  Similarity=0.408  Sum_probs=37.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecC-----C---CCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN-----A---YYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n-----~---~~GG~~~   44 (445)
                      +||+||||+|.+|+.||..+++.|++|+++|+.     .   .+||.|-
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~   50 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCV   50 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccccc
Confidence            599999999999999999999999999999974     2   5899764

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.77  E-value=2.5e-05  Score=83.57  Aligned_cols=38  Identities=24%  Similarity=0.353  Sum_probs=34.9

Q ss_pred             cccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGG   41 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG   41 (445)
                      ++||||||+|.+||.||..++++  |.+|+++||+...|+
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s   50 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS   50 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence            58999999999999999999998  999999999987544

>PRK06996 hypothetical protein; Provisional

Probab=97.76  E-value=2.7e-05  Score=79.02  Aligned_cols=36  Identities=25%  Similarity=0.446  Sum_probs=32.7

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCC----CeEEEEecCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDG----LKVLHMDRNAY   38 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G----~~VlvlE~n~~   38 (445)
                      .++||+|||||++|+++|..|+++|    ++|+++|+.+.
T Consensus        10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~   49 (398)
T PRK06996         10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP   49 (398)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence            4689999999999999999999997    47999999865

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.76  E-value=2.6e-05  Score=81.73  Aligned_cols=39  Identities=21%  Similarity=0.376  Sum_probs=35.9

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      ++||+|||+|.+||.||..+++ |.+|+++||.+..||.+
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s   41 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS   41 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence            6899999999999999999976 99999999999988754

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.75  E-value=2.5e-05  Score=74.42  Aligned_cols=56  Identities=18%  Similarity=0.250  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCe--EEEcCEEEE-CCCCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGE--TAKCKKVVC-DPSYLP  289 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~--~~~ad~VI~-~~~~~p  289 (445)
                      .+-+.+.+.....||.++.+-+|.+... .++++..|-+ ++.  .++||..|. +.+++.
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffs  318 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFS  318 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeecccccc
Confidence            5778898999999999999999999998 5888888865 443  467885555 566764

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.75  E-value=2.7e-05  Score=82.34  Aligned_cols=56  Identities=16%  Similarity=0.106  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE----eCCe--EEEcCEEEECCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT----SEGE--TAKCKKVVCDPSY  287 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~----~~g~--~~~ad~VI~~~~~  287 (445)
                      .++...|.+.+...|+++++++.|+++..+++++++|+.    .+|+  .+.|+.||.+.+-
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG  195 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG  195 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence            467788888777789999999999999885444488765    2453  5899999987653

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.75  E-value=3.3e-05  Score=79.05  Aligned_cols=42  Identities=17%  Similarity=0.131  Sum_probs=37.5

Q ss_pred             cccEEEECCChhHHHHHHHh-hhCCCeEEEEecCCCCCCcccc
Q 036458            4 DYDVIVLGTGLKECILSGVL-SVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~L-a~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      ...|+|||+|++||.||..| ++.|++|+++|+.+.+||.++.
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~   81 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY   81 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence            35799999999999999965 5779999999999999999874

>PRK08275 putative oxidoreductase; Provisional

Probab=97.74  E-value=2.9e-05  Score=82.25  Aligned_cols=55  Identities=18%  Similarity=0.173  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS  286 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~  286 (445)
                      .++.+.|.+.++..|++++.++.|++|..++++++.|+..    +|+  .+.|+.||.+.+
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATG  197 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCG  197 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCC
Confidence            3677888888888899999999999998844678888752    454  588999998754

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.74  E-value=5.4e-05  Score=58.30  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=33.7

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      .|+|||+|+.|+-+|..|++.|++|+++++++++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            48999999999999999999999999999999988

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.73  E-value=3.3e-05  Score=81.48  Aligned_cols=40  Identities=20%  Similarity=0.351  Sum_probs=36.2

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      .++||||||+|++||.||..+++. .+|+++||....||..
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t   46 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGST   46 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCCh
Confidence            468999999999999999999986 8999999999888853

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.72  E-value=3e-05  Score=82.52  Aligned_cols=41  Identities=12%  Similarity=0.090  Sum_probs=36.4

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCC--CeEEEEecCCCCCCcc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAYYGGES   43 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~~GG~~   43 (445)
                      .++||+|||+|++||.||..++++|  .+|+++||....||.+
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s   45 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT   45 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence            3589999999999999999999874  7999999998888744

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.72  E-value=3.5e-05  Score=81.01  Aligned_cols=45  Identities=22%  Similarity=0.287  Sum_probs=40.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      |..++||||||+|.+||.||..++.+|.+|+++||....||....
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~   47 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA   47 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence            346799999999999999999999999999999999999966543

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.70  E-value=4.5e-05  Score=76.17  Aligned_cols=42  Identities=24%  Similarity=0.280  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      ...+|+|||+|.+|+.+|..|++.|++|+++|+.+++||...
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence            346899999999999999999999999999999999999764

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.69  E-value=3.6e-05  Score=81.81  Aligned_cols=40  Identities=15%  Similarity=0.103  Sum_probs=36.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCCcc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGGES   43 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG~~   43 (445)
                      ++||+|||+|++||.||..++++  |.+|+++||+...||.+
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s   44 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT   44 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence            58999999999999999999987  57999999999888854

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.69  E-value=4.5e-05  Score=79.43  Aligned_cols=41  Identities=24%  Similarity=0.296  Sum_probs=38.5

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      ..+|+|||+|++|+++|..|++.|++|+++|+.+++||...
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM  183 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            36999999999999999999999999999999999999764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.68  E-value=4.4e-05  Score=79.00  Aligned_cols=57  Identities=9%  Similarity=0.028  Sum_probs=42.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCC--eEEEcCEEEECCCCCCc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEG--ETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g--~~~~ad~VI~~~~~~p~  290 (445)
                      .++.+.+.+.++..|.++++++.|++|..+ ++. ..+..+|  +++.+|.||.+.+..|.
T Consensus       211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~-v~~~~~g~~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        211 EDIAHILREKLENDGVKIFTGAALKGLNSY-KKQ-ALFEYEGSIQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEc-CCE-EEEEECCceEEEEeCEEEEecCCccC
Confidence            357777778888899999999999999763 332 3344444  46899999998876664

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.66  E-value=4.7e-05  Score=78.98  Aligned_cols=55  Identities=16%  Similarity=0.218  Sum_probs=45.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~  288 (445)
                      ..+.+.|.+.+...|++++.+ .|+.+.. ++++++++..+++.++|+.||.+.+-+
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~~g~~i~a~~VVLATGG~  174 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFLDGELLKFDATVIATGGF  174 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEECCEEEEeCeEEECCCcC
Confidence            368889988888889999765 7888877 477888888888889999999987654

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.65  E-value=4e-05  Score=78.52  Aligned_cols=40  Identities=30%  Similarity=0.292  Sum_probs=38.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      ..|.|||+|++||+||..|+++|++|+++|+.+..||+..
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~  163 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLL  163 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEE
Confidence            5799999999999999999999999999999999999986

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.64  E-value=5.4e-05  Score=68.81  Aligned_cols=33  Identities=27%  Similarity=0.378  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ||+|||||.+|+.||..|++.|.+|+++|+++.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            799999999999999999999999999977754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.61  E-value=6.8e-05  Score=79.70  Aligned_cols=41  Identities=22%  Similarity=0.170  Sum_probs=38.3

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      ..+|+|||+|++||++|..|++.|++|+++|+++.+||...
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            46899999999999999999999999999999999999764

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.61  E-value=6.2e-05  Score=82.48  Aligned_cols=40  Identities=25%  Similarity=0.211  Sum_probs=36.4

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      +..+|+|||+|++||+||+.|++.|++|+++|+.+..|+.
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP  421 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence            4568999999999999999999999999999998877664

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=97.61  E-value=5.6e-05  Score=74.14  Aligned_cols=43  Identities=28%  Similarity=0.404  Sum_probs=37.7

Q ss_pred             CcccEEEECCChhHHHHHHHhhh----C--CCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSV----D--GLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~----~--G~~VlvlE~n~~~GG~~~s   45 (445)
                      +++||+|||+|.+||+||.+|.+    +  -.+|+|+||...+||.+-|
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS  123 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS  123 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence            46999999999999999998853    2  3699999999999998765

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.55  E-value=0.00059  Score=68.81  Aligned_cols=63  Identities=19%  Similarity=0.172  Sum_probs=49.2

Q ss_pred             eEEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCC
Q 036458          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       224 ~~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p  289 (445)
                      .++|..|   ...+.++|.+.+.. |++++.+++|++|..+ +++ +.|+ .+|.+++||+||.+.+.+.
T Consensus       124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~G~~~  190 (381)
T TIGR03197       124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDANGEVIAASVVVLANGAQA  190 (381)
T ss_pred             eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcCCccc
Confidence            3466666   35788999888888 9999999999999874 554 4455 4666789999999988774

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.54  E-value=7.8e-05  Score=80.69  Aligned_cols=42  Identities=21%  Similarity=0.271  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +...|.|||+|.+||+||..|-|+||.|+|+||.+++||...
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence            346899999999999999999999999999999999999875

>TIGR03452 mycothione_red mycothione reductase

Probab=97.54  E-value=8.8e-05  Score=76.64  Aligned_cols=56  Identities=16%  Similarity=0.246  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~  290 (445)
                      ++.+.+.+.. ..|.++++++.|++|..+ ++.+.....+|+++.+|.||.+++..|.
T Consensus       211 ~~~~~l~~~~-~~gI~i~~~~~V~~i~~~-~~~v~v~~~~g~~i~~D~vl~a~G~~pn  266 (452)
T TIGR03452       211 DISDRFTEIA-KKKWDIRLGRNVTAVEQD-GDGVTLTLDDGSTVTADVLLVATGRVPN  266 (452)
T ss_pred             HHHHHHHHHH-hcCCEEEeCCEEEEEEEc-CCeEEEEEcCCCEEEcCEEEEeeccCcC
Confidence            4555555443 458899999999999864 4433322346778999999999887664

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK13984 putative oxidoreductase; Provisional

Probab=97.53  E-value=9.7e-05  Score=79.20  Aligned_cols=42  Identities=19%  Similarity=0.225  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +..+|+|||+|.+|+++|..|++.|++|+++|+++++||..+
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            356899999999999999999999999999999999999764

>PRK07846 mycothione reductase; Reviewed

Probab=97.52  E-value=9.8e-05  Score=76.26  Aligned_cols=39  Identities=26%  Similarity=0.578  Sum_probs=33.3

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      +||+||||+|.+|..||..  ..|++|+++|+ +.+||.|-.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n   39 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLN   39 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccC
Confidence            4999999999999988866  46999999998 468997744

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.51  E-value=8.5e-05  Score=77.94  Aligned_cols=54  Identities=19%  Similarity=0.205  Sum_probs=42.7

Q ss_pred             chHHHHHHHHHHHc-CcEEEeCCcceeEEEcCCCcEEEEEe--CCe--EEEcCEEEECCC
Q 036458          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDGDGKVIGVTS--EGE--TAKCKKVVCDPS  286 (445)
Q Consensus       232 ~~L~q~l~r~~~~~-Gg~i~l~~~V~~I~~~~~g~~~~v~~--~g~--~~~ad~VI~~~~  286 (445)
                      ..+.++|.+.+... |++++.+++|++|.. ++++++|+..  +++  ++.|+.||++.+
T Consensus       136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~~~~i~Ak~VVLATG  194 (513)
T PRK07512        136 AAIMRALIAAVRATPSITVLEGAEARRLLV-DDGAVAGVLAATAGGPVVLPARAVVLATG  194 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcChhheee-cCCEEEEEEEEeCCeEEEEECCEEEEcCC
Confidence            46888898887765 889999999999987 4788888763  333  689999998754

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.51  E-value=0.00011  Score=77.30  Aligned_cols=38  Identities=32%  Similarity=0.389  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      |||||||+|++|+.||..+++.|.+|+++|++...+|.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~   38 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK   38 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence            79999999999999999999999999999998654444

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.49  E-value=8.8e-05  Score=79.25  Aligned_cols=37  Identities=27%  Similarity=0.240  Sum_probs=33.8

Q ss_pred             EEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            7 VIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         7 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      |||||+|++||+||..++++|.+|+|+||++.+||..
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g~   37 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAH   37 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCcc
Confidence            7999999999999999999999999999999776543

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR01810 betA choline dehydrogenase

Probab=97.48  E-value=9.7e-05  Score=77.97  Aligned_cols=33  Identities=33%  Similarity=0.479  Sum_probs=31.3

Q ss_pred             cEEEECCChhHHHHHHHhhhCC-CeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~   38 (445)
                      |+||||+|.+|+++|.+||++| ++|+|||+...
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            8999999999999999999999 69999999864

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.48  E-value=0.00012  Score=75.87  Aligned_cols=58  Identities=16%  Similarity=0.194  Sum_probs=43.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~  290 (445)
                      .++.+.+.+.++..|.++++++.|++|..+ ++.+.....+|+++.+|.||.+.+..|.
T Consensus       218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~~v~~~~g~~l~~D~vl~a~G~~pn  275 (466)
T PRK07845        218 ADAAEVLEEVFARRGMTVLKRSRAESVERT-GDGVVVTLTDGRTVEGSHALMAVGSVPN  275 (466)
T ss_pred             HHHHHHHHHHHHHCCcEEEcCCEEEEEEEe-CCEEEEEECCCcEEEecEEEEeecCCcC
Confidence            356677777788899999999999999764 3444323357888999999998776654

>PLN02785 Protein HOTHEAD

Probab=97.45  E-value=0.00012  Score=77.67  Aligned_cols=35  Identities=37%  Similarity=0.641  Sum_probs=32.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..||+||||+|.+||++|.+|++ +.+|++||+...
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            46999999999999999999999 699999999864

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.45  E-value=0.00014  Score=77.56  Aligned_cols=34  Identities=21%  Similarity=0.433  Sum_probs=31.9

Q ss_pred             cEEEECCChhHHHHHHHhh----hCCCeEEEEecCCCC
Q 036458            6 DVIVLGTGLKECILSGVLS----VDGLKVLHMDRNAYY   39 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La----~~G~~VlvlE~n~~~   39 (445)
                      ||+|||+|.+||.||..++    ++|.+|+++||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            8999999999999999998    789999999999873

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.43  E-value=0.00013  Score=80.21  Aligned_cols=34  Identities=18%  Similarity=0.326  Sum_probs=32.1

Q ss_pred             cEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYY   39 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~   39 (445)
                      +|+|||||++||++|..|++.  |++|+|+|+++..
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~   37 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY   37 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence            699999999999999999998  8999999999873

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.41  E-value=0.00016  Score=80.85  Aligned_cols=35  Identities=26%  Similarity=0.425  Sum_probs=33.6

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ++||+|||+|.+||.||..++++|.+|+++||...
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            58999999999999999999999999999999985

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.40  E-value=0.00017  Score=70.28  Aligned_cols=41  Identities=29%  Similarity=0.469  Sum_probs=39.5

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +|||+|||+|++|-.||...++.|.+...+|++..+||.|-
T Consensus        39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL   79 (506)
T KOG1335|consen   39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL   79 (506)
T ss_pred             cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence            69999999999999999999999999999999999999874

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=97.36  E-value=0.0014  Score=63.78  Aligned_cols=41  Identities=20%  Similarity=0.301  Sum_probs=36.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhC----CCeEEEEecCCCCCCcccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVD----GLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~n~~~GG~~~s   45 (445)
                      ..+-|||+|++||++|..|-|.    |.++.++|--+..||..-.
T Consensus        23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG   67 (587)
T COG4716          23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG   67 (587)
T ss_pred             ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence            4689999999999999999875    6799999999999997654

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.30  E-value=0.00024  Score=68.15  Aligned_cols=48  Identities=27%  Similarity=0.369  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHhh----hCCCeEEEEecCCCCCCcccccchhh
Q 036458            3 EDYDVIVLGTGLKECILSGVLS----VDGLKVLHMDRNAYYGGESTSLNLTQ   50 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La----~~G~~VlvlE~n~~~GG~~~s~~~~~   50 (445)
                      ..+||+|||+|..|++.|+-|.    +.|.+|+|+|+++.|--...-++..+
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGG  136 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGG  136 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecc
Confidence            4689999999999999999886    34799999999998754444444443

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.21  E-value=0.00032  Score=70.73  Aligned_cols=33  Identities=21%  Similarity=0.380  Sum_probs=31.4

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      ||+|||+|++||++|..|++. ++|+|+=|++.-
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence            999999999999999999999 999999998776

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.21  E-value=0.00028  Score=71.87  Aligned_cols=36  Identities=33%  Similarity=0.422  Sum_probs=32.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      |.+.|||||||||.+|+-||.+.||.|.+++++=-|
T Consensus         1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~   36 (621)
T COG0445           1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN   36 (621)
T ss_pred             CCCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence            556799999999999999999999999999998554

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.10  E-value=0.00056  Score=65.22  Aligned_cols=39  Identities=28%  Similarity=0.405  Sum_probs=36.6

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      -|||||+|++||+|+..+-..|-.|+++|++...||...
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi   49 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI   49 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence            499999999999999999999988999999999999864

>PRK09897 hypothetical protein; Provisional

Probab=96.96  E-value=0.00088  Score=70.21  Aligned_cols=39  Identities=15%  Similarity=0.168  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCC--CeEEEEecCCCCC-Ccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAYYG-GES   43 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~~G-G~~   43 (445)
                      ++|+|||+|.+|+++|..|.+.+  .+|+|+|++..+| |..
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~a   43 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMP   43 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCccee
Confidence            47999999999999999998765  4899999999999 653

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.84  E-value=0.0012  Score=68.83  Aligned_cols=38  Identities=34%  Similarity=0.575  Sum_probs=34.3

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhC-CCeEEEEecCCCC
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVD-GLKVLHMDRNAYY   39 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~n~~~   39 (445)
                      +.+||.||||||-+||++|++||+. ..+||+||+...+
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            3579999999999999999999988 4799999998666

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.82  E-value=0.0014  Score=66.63  Aligned_cols=56  Identities=18%  Similarity=0.099  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~  290 (445)
                      ++.+.+.+.++..|.++++++.|++|..  ++.+.....+|+++.||.||.+.+..|.
T Consensus       187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~~v~l~~g~~i~aD~Vv~a~G~~pn  242 (396)
T PRK09754        187 PVQRYLLQRHQQAGVRILLNNAIEHVVD--GEKVELTLQSGETLQADVVIYGIGISAN  242 (396)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCEEEEEECCCCEEECCEEEECCCCChh
Confidence            4555667777889999999999999864  3333323357889999999999887764

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=96.73  E-value=0.0011  Score=63.06  Aligned_cols=41  Identities=27%  Similarity=0.425  Sum_probs=35.8

Q ss_pred             CcccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCCcc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGGES   43 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG~~   43 (445)
                      +.||.||||+|+.||+.|..|+-+  +.+|.|||+....+=..
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hq   89 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQ   89 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceee
Confidence            469999999999999999999977  99999999997665433

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.71  E-value=0.0017  Score=65.69  Aligned_cols=40  Identities=25%  Similarity=0.313  Sum_probs=38.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      .+|+|||+|..||.+|..|++.|++|+++|+++++||...
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~  176 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL  176 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence            5899999999999999999999999999999999999885

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.58  E-value=0.0024  Score=65.45  Aligned_cols=52  Identities=21%  Similarity=0.080  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      ++.+.+.+.++..|.+++++++|++|..  + .+  +..+|+++.+|.||++++..|
T Consensus       229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~-~v--~~~~g~~i~~d~vi~~~G~~~  280 (424)
T PTZ00318        229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD--K-EV--VLKDGEVIPTGLVVWSTGVGP  280 (424)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeEEEEeC--C-EE--EECCCCEEEccEEEEccCCCC
Confidence            4667777788999999999999999853  2 22  245788999999999987654

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=96.52  E-value=0.00099  Score=59.87  Aligned_cols=41  Identities=24%  Similarity=0.374  Sum_probs=36.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG~~~   44 (445)
                      +-||||+|+|-+||+||+..+++  ..+|.++|..-.+||-++
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW  118 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW  118 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence            45999999999999999999955  589999999999998653

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.52  E-value=0.0024  Score=64.07  Aligned_cols=34  Identities=29%  Similarity=0.540  Sum_probs=30.8

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      +.|||||||||.+|+-||++.||-|-+.+++-.|
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            5799999999999999999999999988887654

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.47  E-value=0.0031  Score=64.88  Aligned_cols=53  Identities=11%  Similarity=0.075  Sum_probs=40.7

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~  290 (445)
                      ++.+.+.+.++..|.++++++.|++|..   ..  .+..+|+++.+|.||.+.+..|.
T Consensus       190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~~--v~~~~g~~~~~D~vl~a~G~~pn  242 (438)
T PRK13512        190 DMNQPILDELDKREIPYRLNEEIDAING---NE--VTFKSGKVEHYDMIIEGVGTHPN  242 (438)
T ss_pred             HHHHHHHHHHHhcCCEEEECCeEEEEeC---CE--EEECCCCEEEeCEEEECcCCCcC
Confidence            5667777888889999999999999842   22  12246778999999999887663

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=96.47  E-value=0.0083  Score=59.01  Aligned_cols=64  Identities=16%  Similarity=0.183  Sum_probs=53.2

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      ++|..|   ...+.+++.+.+...|++++.+++|++|.. +++++.+|.++++++.||.||.+.+.+.
T Consensus       127 ~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g~~~a~~vV~a~G~~~  193 (337)
T TIGR02352       127 FYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSGDVQADQVVLAAGAWA  193 (337)
T ss_pred             EcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCCEEECCEEEEcCChhh
Confidence            456666   567889999999999999999999999987 4666777877656899999999988764

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.41  E-value=0.003  Score=60.70  Aligned_cols=32  Identities=34%  Similarity=0.401  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEec
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDR   35 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~   35 (445)
                      +||.||||+|-+||+||-..|..|++|.+||-
T Consensus        19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             CccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            69999999999999999999999999999985

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.26  E-value=0.0037  Score=59.97  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      --|.|||+||+|+-||+.++++|.+|.++|-++.=+
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~   39 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG   39 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence            468999999999999999999999999999987655

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=96.19  E-value=0.0027  Score=59.79  Aligned_cols=42  Identities=17%  Similarity=0.313  Sum_probs=38.1

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCC------CeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDG------LKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G------~~VlvlE~n~~~GG~~~   44 (445)
                      ....++|+|+|+.|+.+|++|++.+      ..|+++|+....||...
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG   56 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG   56 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence            4568999999999999999999998      89999999999988654

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=96.15  E-value=0.0056  Score=53.55  Aligned_cols=35  Identities=20%  Similarity=0.365  Sum_probs=29.9

Q ss_pred             EEECCChhHHHHHHHhhhC-----CCeEEEEecCCCCC-Ccc
Q 036458            8 IVLGTGLKECILSGVLSVD-----GLKVLHMDRNAYYG-GES   43 (445)
Q Consensus         8 iIIGaGl~Gl~aA~~La~~-----G~~VlvlE~n~~~G-G~~   43 (445)
                      +|||+|++|++++..|.+.     ..+|+|+|+++. | |..
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~   41 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGA   41 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-ccccc
Confidence            5999999999999999987     469999999766 5 433

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.99  E-value=0.0073  Score=54.19  Aligned_cols=33  Identities=24%  Similarity=0.361  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .|.|||+|..|...|..++++|++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            489999999999999999999999999999754

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.99  E-value=0.0072  Score=52.93  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +|.|||+|-.|.++|..|+++|++|+++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            48999999999999999999999999999986

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=95.99  E-value=0.0077  Score=59.57  Aligned_cols=35  Identities=31%  Similarity=0.501  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHhhhC----CCeEEEEecCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVD----GLKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~n~~   38 (445)
                      .|||+|+|||+.|++.|+.|..+    -+||+++|..+.
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            79999999999999999999855    479999999844

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.84  E-value=0.0094  Score=53.72  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=27.4

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .|.|||.|..||.+|..||++|++|+-+|.|..
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            589999999999999999999999999999974

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=95.82  E-value=0.0098  Score=59.49  Aligned_cols=53  Identities=13%  Similarity=0.074  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~  290 (445)
                      ++.+.+.+.++..|.++++++.|++|..  + .  .+..+|+++.+|.||.+++..|.
T Consensus       192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~-~--v~~~~g~~i~~D~vi~a~G~~p~  244 (364)
T TIGR03169       192 KVRRLVLRLLARRGIEVHEGAPVTRGPD--G-A--LILADGRTLPADAILWATGARAP  244 (364)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEcC--C-e--EEeCCCCEEecCEEEEccCCChh
Confidence            4566777788899999999999998842  2 2  12347889999999999886653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.70  E-value=0.013  Score=56.68  Aligned_cols=42  Identities=24%  Similarity=0.324  Sum_probs=39.8

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      ..||..|||+|-+|+++|.+.+..|-+|.++|..-.+||.|-
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCV   60 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCV   60 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEE
Confidence            469999999999999999999999999999999999999884

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=95.66  E-value=0.016  Score=56.83  Aligned_cols=42  Identities=14%  Similarity=0.021  Sum_probs=37.4

Q ss_pred             cccEEEECCChhHHHHHHHhhh--CCCeEEEEecCCCCCCcccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSV--DGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~--~G~~VlvlE~n~~~GG~~~s   45 (445)
                      ...|.|||+|++|.-+|..|-+  .+.+|.++|+.+.++|..+.
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy   63 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY   63 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence            3579999999999999998877  47999999999999999864

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=95.65  E-value=0.013  Score=59.41  Aligned_cols=39  Identities=21%  Similarity=0.223  Sum_probs=35.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++.++.
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~  183 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN  183 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence            469999999999999999999999999999999887653

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.33  E-value=0.022  Score=49.20  Aligned_cols=31  Identities=19%  Similarity=0.439  Sum_probs=29.3

Q ss_pred             EEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            7 VIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         7 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      |+|+|+|-.|+..|++|+++|++|.++.+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999998874

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.31  E-value=0.023  Score=57.27  Aligned_cols=56  Identities=16%  Similarity=0.250  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p~  290 (445)
                      ++.+.+.+.++..|.+++++++|++|..+ ++.. .+. .+|+++.||.||.+.+..|.
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~g~~i~~D~vI~a~G~~p~  240 (377)
T PRK04965        184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSGI-RATLDSGRSIEVDAVIAAAGLRPN  240 (377)
T ss_pred             HHHHHHHHHHHhCCCEEEECCeEEEEEcc-CCEE-EEEEcCCcEEECCEEEECcCCCcc
Confidence            45566777788899999999999999763 3333 344 57889999999999887764

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=95.27  E-value=0.023  Score=57.20  Aligned_cols=51  Identities=27%  Similarity=0.332  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCe-EEEcCEEEECCCCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGE-TAKCKKVVCDPSYLP  289 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~-~~~ad~VI~~~~~~p  289 (445)
                      ++.+...+.++.+|++++++++|++|..  ++    |+ .+|+ ++.|+.+|++++.-+
T Consensus       210 ~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~~----v~~~~g~~~I~~~tvvWaaGv~a  262 (405)
T COG1252         210 KLSKYAERALEKLGVEVLLGTPVTEVTP--DG----VTLKDGEEEIPADTVVWAAGVRA  262 (405)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCceEEECC--Cc----EEEccCCeeEecCEEEEcCCCcC
Confidence            4556666788999999999999999854  33    33 3555 599999999988654

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.21  E-value=0.02  Score=56.08  Aligned_cols=33  Identities=24%  Similarity=0.301  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      +|.|||+|+-|...|..|+++|++|+++|++..
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            699999999999999999999999999999864

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.18  E-value=0.024  Score=59.01  Aligned_cols=34  Identities=24%  Similarity=0.270  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|+|||+|.+|+.+|..|++.|++|+++|+++.
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4699999999999999999999999999998864

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.17  E-value=0.026  Score=56.86  Aligned_cols=37  Identities=30%  Similarity=0.246  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      .+|+|||+|..|+-+|..|++.|++|+++|+.+++..
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~  178 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA  178 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc
Confidence            4799999999999999999999999999999988654

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.10  E-value=0.029  Score=57.68  Aligned_cols=38  Identities=18%  Similarity=0.144  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++.+.
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~  195 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR  195 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence            46999999999999999999999999999999887544

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.03  E-value=0.025  Score=58.57  Aligned_cols=35  Identities=26%  Similarity=0.280  Sum_probs=32.4

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      .|.|||.|.+|+++|..|.++|++|++.|++....
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~   36 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPE   36 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence            48999999999999999999999999999988753

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.02  E-value=0.017  Score=57.30  Aligned_cols=37  Identities=35%  Similarity=0.564  Sum_probs=27.9

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYY   39 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~   39 (445)
                      +.||+|+||.|+++|++|++|...+ .+++.||+++..
T Consensus         1 ~~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f   38 (341)
T PF13434_consen    1 EIYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF   38 (341)
T ss_dssp             -EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred             CceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence            3589999999999999999999887 999999998753

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=95.02  E-value=0.027  Score=58.51  Aligned_cols=37  Identities=14%  Similarity=0.177  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~  217 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP  217 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence            4799999999999999999999999999999987643

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.96  E-value=0.014  Score=56.41  Aligned_cols=39  Identities=23%  Similarity=0.442  Sum_probs=34.0

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      ..|||+|||+|++|-+||.+.||+|.+.=++  .++.||..
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQv  248 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQV  248 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCee
Confidence            3599999999999999999999999988775  46788865

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.94  E-value=0.036  Score=54.36  Aligned_cols=33  Identities=21%  Similarity=0.321  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|.-|+..|.+|+++|++|+++.|+.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            479999999999999999999999999999865

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.90  E-value=0.033  Score=53.99  Aligned_cols=37  Identities=30%  Similarity=0.255  Sum_probs=33.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      |..-..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus         1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4444579999999999999999999999999999874

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.90  E-value=0.033  Score=53.89  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      ..|.|||+|.-|...|..|+++|++|+++|+++..
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            36999999999999999999999999999998654

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=94.81  E-value=0.034  Score=57.53  Aligned_cols=37  Identities=14%  Similarity=0.182  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  207 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP  207 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence            4799999999999999999999999999999988653

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.74  E-value=0.035  Score=53.75  Aligned_cols=34  Identities=21%  Similarity=0.222  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4699999999999999999999999999998753

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.64  E-value=0.044  Score=55.67  Aligned_cols=40  Identities=13%  Similarity=0.258  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCC---CeEEEEecCCCCCCccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDG---LKVLHMDRNAYYGGEST   44 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G---~~VlvlE~n~~~GG~~~   44 (445)
                      ++|+|||+|.+|+..|..|.+.-   -++.++|+.+..|+-.+
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia   44 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA   44 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence            68999999999999999998662   23999999999997654

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=94.64  E-value=0.044  Score=60.94  Aligned_cols=58  Identities=12%  Similarity=0.098  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p~  290 (445)
                      +..+.+.+.++..|.++++++.|++|..+.++....+. .+|+++.+|.||.+++..|.
T Consensus       188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn  246 (847)
T PRK14989        188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQ  246 (847)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccC
Confidence            34456667788899999999999999753223344454 58889999999999887764

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.63  E-value=0.044  Score=53.64  Aligned_cols=37  Identities=19%  Similarity=0.377  Sum_probs=33.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      |+.-..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus         1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            6666679999999999999999999999999999875

>TIGR02053 MerA mercuric reductase

Probab=94.60  E-value=0.04  Score=57.09  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  203 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP  203 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC
Confidence            4799999999999999999999999999999987654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.58  E-value=0.035  Score=53.70  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=31.0

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            589999999999999999999999999999864

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.58  E-value=0.047  Score=53.55  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|.|||+|.-|...|..++++|++|+++|.++.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4599999999999999999999999999999863

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=94.58  E-value=0.041  Score=56.82  Aligned_cols=37  Identities=24%  Similarity=0.244  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|..|+-+|..|++.|++|+++|+.+++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~  203 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR  203 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence            4699999999999999999999999999999988753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06370 mercuric reductase; Validated

Probab=94.55  E-value=0.047  Score=56.60  Aligned_cols=38  Identities=13%  Similarity=0.190  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~  209 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR  209 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence            47999999999999999999999999999999987654

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=94.49  E-value=0.056  Score=49.33  Aligned_cols=43  Identities=23%  Similarity=0.315  Sum_probs=36.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEec---CCC-CCCcccccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDR---NAY-YGGESTSLN   47 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~---n~~-~GG~~~s~~   47 (445)
                      -.|+|||+|+++-+||.+++|+-.|.+++|-   |+. +||...|-+
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT   55 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT   55 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence            4799999999999999999999999999994   444 588776654

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=94.45  E-value=0.045  Score=56.36  Aligned_cols=37  Identities=19%  Similarity=0.191  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -+++|||+|..|+-+|..|++.|.+|+++++.+++..
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~  185 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK  185 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence            4799999999999999999999999999999988754

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.43  E-value=0.049  Score=56.53  Aligned_cols=37  Identities=19%  Similarity=0.176  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~  211 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP  211 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence            4699999999999999999999999999999887644

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=94.40  E-value=0.21  Score=50.12  Aligned_cols=61  Identities=16%  Similarity=0.130  Sum_probs=48.0

Q ss_pred             CceEEeCCC-cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe--CCeEEEcCEEEECCC
Q 036458          222 SPYIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS--EGETAKCKKVVCDPS  286 (445)
Q Consensus       222 s~~~~p~gG-~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~--~g~~~~ad~VI~~~~  286 (445)
                      ...+||.-. ..++.++|.+.++..|++++++++|++| .  +++ ..+.+  ++++++||.||.+.+
T Consensus        75 ~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i-~--~~~-~~v~~~~~~~~~~a~~vIlAtG  138 (376)
T TIGR03862        75 SGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW-Q--GGT-LRFETPDGQSTIEADAVVLALG  138 (376)
T ss_pred             CCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE-e--CCc-EEEEECCCceEEecCEEEEcCC
Confidence            345799766 8899999999999999999999999999 2  233 34553  345799999998754

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=94.38  E-value=0.052  Score=56.20  Aligned_cols=37  Identities=19%  Similarity=0.308  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~  207 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP  207 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence            4799999999999999999999999999999987643

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.36  E-value=0.049  Score=56.61  Aligned_cols=38  Identities=16%  Similarity=0.080  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~  212 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA  212 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Confidence            47999999999999999999999999999999987543

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.35  E-value=0.051  Score=56.28  Aligned_cols=37  Identities=14%  Similarity=0.134  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -+++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  209 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP  209 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC
Confidence            4699999999999999999999999999999988754

>PRK07846 mycothione reductase; Reviewed

Probab=94.35  E-value=0.053  Score=56.06  Aligned_cols=36  Identities=19%  Similarity=0.350  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll  202 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL  202 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            479999999999999999999999999999998765

>PRK04148 hypothetical protein; Provisional

Probab=94.32  E-value=0.046  Score=46.22  Aligned_cols=33  Identities=24%  Similarity=0.335  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..+++||.| .|...|..|++.|++|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            459999999 999889999999999999999987

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=94.28  E-value=0.057  Score=55.87  Aligned_cols=37  Identities=27%  Similarity=0.257  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  206 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP  206 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence            4799999999999999999999999999999998765

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.27  E-value=0.054  Score=56.21  Aligned_cols=37  Identities=16%  Similarity=0.099  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~  209 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP  209 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence            3799999999999999999999999999999887643

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.25  E-value=0.053  Score=55.39  Aligned_cols=37  Identities=19%  Similarity=0.194  Sum_probs=33.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      |.. ..|.|||.|..|+..|..|+++|++|+.+|++..
T Consensus         1 m~~-~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          1 MSF-ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             CCc-cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            553 5799999999999999999999999999998764

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=94.13  E-value=0.067  Score=55.37  Aligned_cols=37  Identities=19%  Similarity=0.392  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      ..++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  212 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS  212 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence            4699999999999999999999999999999987754

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=94.11  E-value=0.06  Score=55.16  Aligned_cols=36  Identities=19%  Similarity=0.272  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      -+|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~  173 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL  173 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC
Confidence            479999999999999999999999999999998763

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=94.01  E-value=0.069  Score=51.85  Aligned_cols=37  Identities=24%  Similarity=0.333  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      |..--.|.|||+|.-|...|..|+++|++|+++|++.
T Consensus         1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            5555579999999999999999999999999999876

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.01  E-value=0.061  Score=50.06  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      +++|||+|--|...|..|++.|+.|+++|+++.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            589999999999999999999999999999854

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=93.93  E-value=0.07  Score=54.87  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=34.0

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      .++|||+|..|+-.|..+++-|.+|+++|+++++--
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp  210 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP  210 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence            589999999999999999999999999999999755

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=93.89  E-value=0.061  Score=49.08  Aligned_cols=38  Identities=29%  Similarity=0.375  Sum_probs=34.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      |.....|.|||+|+-|+-.|-..+.+|+.|.++|+|.-
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            44567899999999999999999999999999999864

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.89  E-value=0.063  Score=52.01  Aligned_cols=34  Identities=21%  Similarity=0.228  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            3699999999999999999999999999999864

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=93.85  E-value=0.07  Score=51.79  Aligned_cols=32  Identities=22%  Similarity=0.406  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|.|||+|--|+..|..|+++|++|++++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            48999999999999999999999999999853

>TIGR03452 mycothione_red mycothione reductase

Probab=93.81  E-value=0.079  Score=54.78  Aligned_cols=37  Identities=19%  Similarity=0.283  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~  206 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR  206 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence            4799999999999999999999999999999988753

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=93.81  E-value=0.083  Score=54.97  Aligned_cols=37  Identities=19%  Similarity=0.210  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  220 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA  220 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC
Confidence            4799999999999999999999999999999988754

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=93.79  E-value=0.064  Score=59.37  Aligned_cols=55  Identities=16%  Similarity=0.217  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 036458          234 LPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       234 L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p~  290 (445)
                      +.+.+.+.++..|.++++++.|++|..  +++..+|. .+|+++.+|.||.+++..|.
T Consensus       184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn  239 (785)
T TIGR02374       184 AGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIRPN  239 (785)
T ss_pred             HHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence            345566677889999999999999864  34455565 57889999999999887763

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=93.74  E-value=0.19  Score=52.92  Aligned_cols=66  Identities=18%  Similarity=0.138  Sum_probs=51.4

Q ss_pred             eEEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CC--eEEEcCEEEECCCCCCcc
Q 036458          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EG--ETAKCKKVVCDPSYLPDK  291 (445)
Q Consensus       224 ~~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g--~~~~ad~VI~~~~~~p~~  291 (445)
                      +.|| .|   ...+..++++.+..+|++++.+++|++|.. +++++++|+.    +|  .+++|+.||.+++.|...
T Consensus       118 ~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~  192 (516)
T TIGR03377       118 VKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIR-EGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGR  192 (516)
T ss_pred             EEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHH
Confidence            3466 45   346788899999999999999999999988 4677766653    34  378999999999888543

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.66  E-value=0.086  Score=54.39  Aligned_cols=34  Identities=29%  Similarity=0.425  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ...|+|+|+|..|+.+|..|++.|++|+++|+++
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4679999999999999999999999999999986

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.63  E-value=0.099  Score=51.58  Aligned_cols=37  Identities=27%  Similarity=0.324  Sum_probs=33.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      |.....|.|||+|--|...|..|+++|++|++++++.
T Consensus         1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          1 MHHGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4555679999999999999999999999999999964

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=93.57  E-value=0.083  Score=55.60  Aligned_cols=36  Identities=19%  Similarity=-0.001  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      -+|+|||+|..|+-+|..|++.|++|+++|+.+.+.
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~  388 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK  388 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence            479999999999999999999999999999988774

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=93.52  E-value=0.1  Score=54.14  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      -.++|||+|..|+-+|..|++.|.+|+++++.+++...
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~  215 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG  215 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC
Confidence            36999999999999999999999999999999887654

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.51  E-value=0.082  Score=52.44  Aligned_cols=32  Identities=25%  Similarity=0.404  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ++.|||+|..||+.|..||+.||+|+.+|.+.
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            58999999999999999999999999999874

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.47  E-value=0.066  Score=51.24  Aligned_cols=43  Identities=28%  Similarity=0.373  Sum_probs=38.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecC--------CCCCCcccccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRN--------AYYGGESTSLN   47 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n--------~~~GG~~~s~~   47 (445)
                      -+|+|||+|..|.-+|....--|-+|+++|.|        +.+||+..++.
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~  219 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY  219 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence            47999999999999999999999999999999        67888876654

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=93.42  E-value=0.1  Score=51.05  Aligned_cols=33  Identities=24%  Similarity=0.275  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .+|.|||+|--|...|++|+++|.+|+++.|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            469999999999999999999999999999963

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=93.41  E-value=0.085  Score=58.42  Aligned_cols=37  Identities=19%  Similarity=0.091  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|+.|+-+|..|++.|.+|+++|+.+++-.
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~  177 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA  177 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence            4699999999999999999999999999999887643

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.38  E-value=0.094  Score=50.54  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .|.|||+|.-|...|..|+++|++|+++|.++.
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            699999999999999999999999999997754

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.37  E-value=0.09  Score=51.12  Aligned_cols=30  Identities=27%  Similarity=0.367  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEec
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDR   35 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~   35 (445)
                      +|.|||+|--|+..|..|+++|++|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            489999999999999999999999999988

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=93.35  E-value=0.1  Score=53.72  Aligned_cols=37  Identities=11%  Similarity=0.079  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -+|+|||+|..|+-+|..|++.|++|+++++.+++.+
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  186 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP  186 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence            4799999999999999999999999999999887543

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=93.30  E-value=0.11  Score=56.17  Aligned_cols=37  Identities=11%  Similarity=0.130  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -+|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~  349 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP  349 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence            3699999999999999999999999999999998765

>PTZ00058 glutathione reductase; Provisional

Probab=93.27  E-value=0.11  Score=55.16  Aligned_cols=38  Identities=16%  Similarity=0.114  Sum_probs=34.5

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      .-+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~  274 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR  274 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence            35799999999999999999999999999999987653

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.27  E-value=0.14  Score=45.40  Aligned_cols=33  Identities=18%  Similarity=0.127  Sum_probs=29.9

Q ss_pred             cccEEEECCCh-hHHHHHHHhhhCCCeEEEEecC
Q 036458            4 DYDVIVLGTGL-KECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         4 ~~DViIIGaGl-~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      ...|+|||+|- .|..+|.+|.+.|.+|+++.|+
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            46899999995 7999999999999999999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=93.24  E-value=0.1  Score=51.70  Aligned_cols=32  Identities=34%  Similarity=0.575  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +|.|||+|.-|+..|..|+++|++|++++++.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            59999999999999999999999999999864

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=93.23  E-value=0.11  Score=53.63  Aligned_cols=36  Identities=19%  Similarity=0.308  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      -.++|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l  202 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL  202 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC
Confidence            369999999999999999999999999999988764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.15  E-value=0.12  Score=50.58  Aligned_cols=33  Identities=21%  Similarity=0.344  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHhhhCC--CeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~   38 (445)
                      +|.|||+|..|+++|+.|++.|  ..|.++|++..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            5999999999999999999999  58999999753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.08  E-value=0.098  Score=53.39  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=31.0

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .|.|||.|..|+..|..|+++|++|+++|++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            589999999999999999999999999999764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PLN02507 glutathione reductase

Probab=93.03  E-value=0.12  Score=54.17  Aligned_cols=36  Identities=19%  Similarity=0.122  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      -+|+|||+|..|+-+|..|++.|.+|+++++.+++-
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l  239 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL  239 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence            369999999999999999999999999999988753

>PRK10262 thioredoxin reductase; Provisional

Probab=93.02  E-value=0.13  Score=50.52  Aligned_cols=36  Identities=22%  Similarity=0.132  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      -.|+|||+|..|+-+|..|++.|++|+++++.+...
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~  182 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR  182 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC
Confidence            479999999999999999999999999999988763

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=92.93  E-value=0.11  Score=57.72  Aligned_cols=37  Identities=19%  Similarity=0.152  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.++|||+|+.|+-+|..|++.|.+|+++|+.+++-.
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~  182 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA  182 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence            3689999999999999999999999999999987543

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=92.92  E-value=0.15  Score=52.49  Aligned_cols=37  Identities=16%  Similarity=0.193  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  195 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP  195 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            3699999999999999999999999999999887654

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=92.89  E-value=0.12  Score=53.29  Aligned_cols=34  Identities=21%  Similarity=0.157  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      -.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            4799999999999999999999999999998865

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=92.79  E-value=0.17  Score=44.77  Aligned_cols=34  Identities=21%  Similarity=0.152  Sum_probs=29.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ...|+|+|+|..|..||..|...|.+|+++|.+.
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            3579999999999999999999999999999863

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06116 glutathione reductase; Validated

Probab=92.75  E-value=0.14  Score=52.81  Aligned_cols=36  Identities=25%  Similarity=0.194  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  203 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL  203 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc
Confidence            479999999999999999999999999999988764

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.70  E-value=0.16  Score=49.74  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ...|.|||+|.-|...|..|+++|++|.+++++..
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            45799999999999999999999999999999753

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=92.68  E-value=0.13  Score=54.58  Aligned_cols=35  Identities=26%  Similarity=0.305  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      -+|+|||+|..|+-+|..|++.|++|+++++.+..
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~  178 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF  178 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence            46999999999999999999999999999998865

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=92.61  E-value=0.14  Score=53.92  Aligned_cols=36  Identities=17%  Similarity=-0.031  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      -+|+|||||.+|+-+|..|+..|++|+++++.+.+.
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~  387 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK  387 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc
Confidence            479999999999999999999999999999988763

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=92.52  E-value=0.15  Score=53.25  Aligned_cols=34  Identities=15%  Similarity=0.202  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      -..|.|||+|.-|...|..|+++|++|+++|+++
T Consensus         4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3469999999999999999999999999999874

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=92.45  E-value=0.16  Score=49.79  Aligned_cols=32  Identities=31%  Similarity=0.386  Sum_probs=30.4

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +|.|||+|.-|+..|..|+++|++|++++++.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            59999999999999999999999999999974

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=92.40  E-value=0.18  Score=49.22  Aligned_cols=33  Identities=18%  Similarity=0.226  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCC-eEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~   38 (445)
                      .|.|||+|.-|+..|+.|+..|+ +|+++|.++.
T Consensus         3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            69999999999999999999887 8999998543

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PLN02546 glutathione reductase

Probab=92.33  E-value=0.18  Score=53.56  Aligned_cols=37  Identities=14%  Similarity=0.094  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -+|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~  289 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR  289 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence            4799999999999999999999999999999887654

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.32  E-value=0.16  Score=50.51  Aligned_cols=39  Identities=31%  Similarity=0.458  Sum_probs=35.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYY   39 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~   39 (445)
                      |.+.+|+|.||-|+.-|++|++|+..+ ++++.|||.+.+
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            678899999999999999999999876 889999999864

>PRK13748 putative mercuric reductase; Provisional

Probab=92.26  E-value=0.18  Score=53.64  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      -.++|||+|..|+-+|..|++.|++|++++++.
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~  303 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARST  303 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence            469999999999999999999999999999864

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=92.23  E-value=0.16  Score=48.84  Aligned_cols=32  Identities=25%  Similarity=0.241  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|.|||.|+-|...|..|+++|++|++++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999874

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=92.20  E-value=0.37  Score=49.48  Aligned_cols=42  Identities=31%  Similarity=0.584  Sum_probs=38.7

Q ss_pred             CC-CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            1 MD-EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         1 m~-~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      |. ++|||||||||++|++||+.|+++|++|+++||++.+|..
T Consensus         1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k   43 (428)
T PRK10157          1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK   43 (428)
T ss_pred             CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence            65 4699999999999999999999999999999999988764

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=92.16  E-value=0.21  Score=43.88  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=28.3

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +|.|||.|..|...|..|.++|++|.++|++.
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            58999999999999999999999999999874

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14694 putative mercuric reductase; Provisional

Probab=92.13  E-value=0.2  Score=52.01  Aligned_cols=33  Identities=18%  Similarity=0.278  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      -.++|||+|..|+-+|..|++.|.+|+++++..
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~  211 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR  211 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            469999999999999999999999999999753

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=91.97  E-value=0.17  Score=50.33  Aligned_cols=34  Identities=24%  Similarity=0.226  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCe-EEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLK-VLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~n~~   38 (445)
                      -.|+|||+|..|+-+|..|++.|.+ |+++++.+.
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~  207 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI  207 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence            3699999999999999999999987 999998765

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=91.95  E-value=0.2  Score=48.15  Aligned_cols=35  Identities=23%  Similarity=0.162  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      .+|+|||+|.+|+-+|..|++.|++|+++++.+.+
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~  176 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF  176 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence            47999999999999999999999999999998755

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.71  E-value=0.22  Score=49.12  Aligned_cols=32  Identities=25%  Similarity=0.288  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ++.|||+|--|.+.|..|+++|++|.++.++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            48999999999999999999999999999864

>PRK12831 putative oxidoreductase; Provisional

Probab=91.70  E-value=0.24  Score=51.43  Aligned_cols=34  Identities=21%  Similarity=0.067  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      -+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~  315 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE  315 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            4799999999999999999999999999998764

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=91.62  E-value=0.26  Score=44.91  Aligned_cols=33  Identities=21%  Similarity=0.248  Sum_probs=30.3

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCC-eEEEEecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRN   36 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n   36 (445)
                      ...|+|||+|--|+.+|..|++.|. +++++|..
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4579999999999999999999998 69999877

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK14727 putative mercuric reductase; Provisional

Probab=91.62  E-value=0.25  Score=51.45  Aligned_cols=33  Identities=15%  Similarity=0.264  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++++..
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~  221 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST  221 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence            469999999999999999999999999999753

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=91.54  E-value=0.2  Score=52.49  Aligned_cols=34  Identities=29%  Similarity=0.323  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998854

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=91.50  E-value=0.54  Score=50.74  Aligned_cols=41  Identities=29%  Similarity=0.430  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      ++|||||||||+.|+++|+.|+++|++|+++|+++.-+|.+
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~GtS  110 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGTS  110 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCcc
Confidence            46999999999999999999999999999999998766643

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=91.47  E-value=0.32  Score=41.27  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=30.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCe-EEEEecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLK-VLHMDRN   36 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~n   36 (445)
                      ...|+|||+|=+|-+++.+|+..|.+ |+++-|+
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            45799999999999999999999976 9999887

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK07121 hypothetical protein; Validated

Probab=91.43  E-value=0.7  Score=48.33  Aligned_cols=42  Identities=29%  Similarity=0.443  Sum_probs=39.2

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      .++||||||+|++||+||..++++|.+|+||||++..||..+
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~   60 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA   60 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence            468999999999999999999999999999999999998653

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=91.42  E-value=0.19  Score=50.73  Aligned_cols=32  Identities=16%  Similarity=0.166  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .|.|||+|.-|+..|..|+. |++|+.+|++..
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            48999999999999988885 999999998764

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=91.37  E-value=0.25  Score=49.53  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCC-CeEEEEecC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDG-LKVLHMDRN   36 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n   36 (445)
                      .+|+|||+|-.|.++|..||+.| .+|++.+|+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs   34 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS   34 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence            36999999999999999999999 999999998

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.37  E-value=0.23  Score=51.49  Aligned_cols=32  Identities=31%  Similarity=0.411  Sum_probs=30.6

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|.|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus        16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            69999999999999999999999999999876

>PTZ00052 thioredoxin reductase; Provisional

Probab=91.32  E-value=0.23  Score=52.06  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      -+++|||+|..|+-+|..|++.|.+|++++++
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            37999999999999999999999999999975

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=91.29  E-value=0.25  Score=51.54  Aligned_cols=37  Identities=24%  Similarity=0.297  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHhh---hCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLS---VDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La---~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|..|+-+|..++   +.|.+|+++|+++++..
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~  227 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR  227 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc
Confidence            46999999999999997665   44999999999998753

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=91.28  E-value=0.23  Score=51.84  Aligned_cols=31  Identities=29%  Similarity=0.353  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      .++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            6999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK10015 oxidoreductase; Provisional

Probab=91.28  E-value=0.67  Score=47.56  Aligned_cols=54  Identities=13%  Similarity=0.125  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSY  287 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~  287 (445)
                      .+-+.|.+.++..|++++.+++|++|.. +++++.++.+++++++|+.||.+.+.
T Consensus       109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~~~~~i~A~~VI~AdG~  162 (429)
T PRK10015        109 RLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQAGDDILEANVVILADGV  162 (429)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEeCCeEEECCEEEEccCc
Confidence            4455677778888999999999999987 46677777777788999999998664

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.17  E-value=0.37  Score=39.37  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=29.2

Q ss_pred             EEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            7 VIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         7 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      |+|+|.|-.|..+|..|.+.|.+|+++|++...
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~   33 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPER   33 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHH
Confidence            799999999999999999988899999999643

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR00518 alaDH alanine dehydrogenase

Probab=91.16  E-value=0.27  Score=49.37  Aligned_cols=34  Identities=24%  Similarity=0.228  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++|++.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999874

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=91.09  E-value=0.27  Score=51.59  Aligned_cols=34  Identities=29%  Similarity=0.299  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      -.|.|||+|.-|...|..|+++|++|+++|++..
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4599999999999999999999999999998865

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=91.08  E-value=0.51  Score=48.04  Aligned_cols=36  Identities=33%  Similarity=0.505  Sum_probs=33.6

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      ||||||+|++||+||..++++|.+|+|+||.+.+||
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg   36 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG   36 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence            899999999999999999999999999999999999

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=91.07  E-value=0.29  Score=45.26  Aligned_cols=32  Identities=31%  Similarity=0.317  Sum_probs=29.3

Q ss_pred             cEEEEC-CChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLG-TGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ++.||| +|.-|.+.|..|+++|++|+++++++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            489997 89999999999999999999998865

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=91.07  E-value=0.29  Score=47.80  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHhhhCC--CeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~   38 (445)
                      .|+|||+|..|.++|+.|+..|  .++.++|++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            5899999999999999999999  58999999754

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=90.99  E-value=0.82  Score=43.46  Aligned_cols=57  Identities=21%  Similarity=0.089  Sum_probs=44.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeC------------CeEEEcCEEEECCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSE------------GETAKCKKVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~------------g~~~~ad~VI~~~~~~  288 (445)
                      .++.+.|.+.+...|+++++++.|+++..++++++.++..+            ..+++|+.||.+.+..
T Consensus       104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~  172 (257)
T PRK04176        104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD  172 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence            57888898888889999999999999987544477776531            2579999999887644

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=90.99  E-value=0.8  Score=47.02  Aligned_cols=38  Identities=26%  Similarity=0.442  Sum_probs=36.4

Q ss_pred             cEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCCCCcc
Q 036458            6 DVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYYGGES   43 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~GG~~   43 (445)
                      ||||||+|++||+||..++++| .+|+||||++..||.+
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s   39 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS   39 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence            8999999999999999999999 9999999999998864

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=90.96  E-value=0.36  Score=47.45  Aligned_cols=39  Identities=15%  Similarity=0.250  Sum_probs=33.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAYY   39 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~~   39 (445)
                      |-....|+|||+|-.|..+|..|+..|. +|.++|.++..
T Consensus         3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          3 MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            3445689999999999999999999996 99999998764

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.94  E-value=0.26  Score=51.16  Aligned_cols=34  Identities=12%  Similarity=-0.164  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|+|+|.|.+|.++|..|.+.|.+|++.|.++.
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~   42 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA   42 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence            3699999999999999999999999999997654

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=90.90  E-value=0.28  Score=50.90  Aligned_cols=33  Identities=15%  Similarity=0.289  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHhhhC--CCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~   38 (445)
                      .|.|||+|..|+.+|..||++  |++|+.+|.+..
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            599999999999999999998  488999997653

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.84  E-value=0.24  Score=54.29  Aligned_cols=33  Identities=24%  Similarity=0.279  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .|.|||+|..|...|..++++|++|+++|.++.
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             eEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            599999999999999999999999999998843

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=90.75  E-value=0.76  Score=43.88  Aligned_cols=55  Identities=20%  Similarity=0.206  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEE-EEeCCeEEEcCEEEECCCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIG-VTSEGETAKCKKVVCDPSYL  288 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~-v~~~g~~~~ad~VI~~~~~~  288 (445)
                      ++-+.|.+.++..|++++++++|+++..+ ++.+.. ++.++++++||.||.+.+..
T Consensus        92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~a~~vv~a~G~~  147 (295)
T TIGR02032        92 AFDEQLAERAQEAGAELRLGTTVLDVEIH-DDRVVVIVRGGEGTVTAKIVIGADGSR  147 (295)
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEeeEEEe-CCEEEEEEcCccEEEEeCEEEECCCcc
Confidence            56677888888889999999999999874 444332 23455789999999987654

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=90.69  E-value=0.38  Score=45.89  Aligned_cols=36  Identities=19%  Similarity=0.223  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYY   39 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~   39 (445)
                      ...|+|||.|-.|+.+|..|++.| .+++++|....-
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~   66 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC   66 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence            467999999999999999999999 799999977543

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=90.69  E-value=1.3  Score=44.39  Aligned_cols=111  Identities=22%  Similarity=0.208  Sum_probs=62.9

Q ss_pred             CCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHHHHHHHHH
Q 036458          164 KVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSA  243 (445)
Q Consensus       164 ~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q~l~r~~~  243 (445)
                      +.|..|++++.|+++..++-+..+....   .|-++.-..+|..    +-|++.  .....+-.+||...|++.|.+.  
T Consensus        69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRv---NYgQ~~~i~a~~G----~vSla~--a~~gl~sV~GGN~qI~~~ll~~--  137 (368)
T PF07156_consen   69 KVTGEEYLKENGISERFINELVQAATRV---NYGQNVNIHAFAG----LVSLAG--ATGGLWSVEGGNWQIFEGLLEA--  137 (368)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHhheEe---ecccccchhhhhh----heeeee--ccCCceEecCCHHHHHHHHHHH--
Confidence            3677888888899887775443332211   1222111222211    112221  1233466799999999988764  


Q ss_pred             HcCcEEEeCCcceeE-EEcCCCc-EEEEE--e-CC-eEEEcCEEEECCCC
Q 036458          244 VYGGTYMLNKPECKV-EFDGDGK-VIGVT--S-EG-ETAKCKKVVCDPSY  287 (445)
Q Consensus       244 ~~Gg~i~l~~~V~~I-~~~~~g~-~~~v~--~-~g-~~~~ad~VI~~~~~  287 (445)
                       -|+++ ++++|++| ....++. ...|.  . .+ ..-..|.||.+.+.
T Consensus       138 -S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl  185 (368)
T PF07156_consen  138 -SGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPL  185 (368)
T ss_pred             -ccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCc
Confidence             57889 99999999 3323333 22232  2 22 23346999998765

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=90.66  E-value=0.26  Score=47.67  Aligned_cols=32  Identities=19%  Similarity=0.183  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +|.|||.|..|...|..|++.|++|++++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            47899999999999999999999999999885

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=90.31  E-value=0.32  Score=47.27  Aligned_cols=32  Identities=25%  Similarity=0.430  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      ..|.|||+|.-|...|..++..|++|+++|.+
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~   35 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS   35 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence            46999999999999999999988999999999

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=90.30  E-value=0.28  Score=53.62  Aligned_cols=33  Identities=21%  Similarity=0.234  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .|.|||+|..|...|..++++|++|+++|.+.-
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (714)
T TIGR02437       315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH  347 (714)
T ss_pred             eEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            589999999999999999999999999999853

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=90.21  E-value=0.36  Score=49.99  Aligned_cols=34  Identities=21%  Similarity=0.144  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~   38 (445)
                      -.|+|||+|..|+-+|..|++.|. +|+++++++.
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~  308 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR  308 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            479999999999999999999997 9999998764

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=90.15  E-value=0.32  Score=50.38  Aligned_cols=37  Identities=24%  Similarity=0.097  Sum_probs=32.5

Q ss_pred             CcccEEEECCChhHHH-HHHHhhhCCCeEEEEecCCCC
Q 036458            3 EDYDVIVLGTGLKECI-LSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~-aA~~La~~G~~VlvlE~n~~~   39 (445)
                      +...|.|||.|-+|++ +|.+|.+.|++|++.|.+...
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~   43 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESA   43 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCCh
Confidence            3346999999999999 699999999999999988753

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=90.03  E-value=0.47  Score=43.34  Aligned_cols=33  Identities=15%  Similarity=0.192  Sum_probs=30.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      ...|+|||||=.|...|..|.++|.+|+|++++
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            457999999999999999999999999999764

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=89.98  E-value=0.5  Score=41.29  Aligned_cols=31  Identities=19%  Similarity=0.176  Sum_probs=28.8

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEe
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMD   34 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE   34 (445)
                      ...|+|||||-.|+.-|..|.+.|.+|+|+.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            4579999999999999999999999999995

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=89.97  E-value=0.39  Score=49.18  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=32.4

Q ss_pred             cEEEECCChhHHHHHHHhhh--------------CCCeEEEEecCCCCCCc
Q 036458            6 DVIVLGTGLKECILSGVLSV--------------DGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~--------------~G~~VlvlE~n~~~GG~   42 (445)
                      .|+|||+|..|+-.|..|+.              .|.+|+++|+.+++...
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~  225 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS  225 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc
Confidence            79999999999999999985              58999999999877543

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=89.97  E-value=0.32  Score=47.56  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .+.|+|+|--|+..|+.|+++|.+|+++=|.++
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            589999999999999999999999998877765

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=89.92  E-value=0.37  Score=46.91  Aligned_cols=31  Identities=23%  Similarity=0.416  Sum_probs=28.8

Q ss_pred             EEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            7 VIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         7 ViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      |.|||+|..|..+|..|+..|. +|.++|.+.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5799999999999999999987 999999985

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=89.87  E-value=0.41  Score=48.15  Aligned_cols=33  Identities=18%  Similarity=0.463  Sum_probs=30.7

Q ss_pred             ccEEEEC-CChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLG-TGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.||| +|+-|...|..|.++|+.|.++++++
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            4699999 89999999999999999999999875

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=89.84  E-value=0.5  Score=43.28  Aligned_cols=34  Identities=18%  Similarity=0.155  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|+|||+|-.|...+..|.+.|.+|+|++.+..
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~   43 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE   43 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            4799999999999999999999999999987643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=89.68  E-value=0.66  Score=41.80  Aligned_cols=55  Identities=20%  Similarity=0.228  Sum_probs=36.6

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~  288 (445)
                      .++.+-+.+.++.+|..++++++|++|..+ +++ ..|+. +++++.|++||.+.+..
T Consensus        82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~-~~~-w~v~~~~~~~~~a~~VVlAtG~~  137 (203)
T PF13738_consen   82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD-GDG-WTVTTRDGRTIRADRVVLATGHY  137 (203)
T ss_dssp             HHHHHHHHHHHHHTTGGEETS--EEEEEEE-TTT-EEEEETTS-EEEEEEEEE---SS
T ss_pred             HHHHHHHHHHHhhcCcccccCCEEEEEEEe-ccE-EEEEEEecceeeeeeEEEeeecc
Confidence            345566666777888889999999999996 444 44554 56789999999987753

...

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=89.62  E-value=0.4  Score=49.01  Aligned_cols=36  Identities=25%  Similarity=0.179  Sum_probs=33.3

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      ...|.|+|-|.+|+++|..|.+.|.+|++.|.++..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            357999999999999999999999999999988776

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.58  E-value=0.38  Score=50.22  Aligned_cols=33  Identities=21%  Similarity=0.261  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      -.|+|+|.|.+|++++..|.+.|.+|++.|.+.
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~   45 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            369999999999999999999999999999763

>PRK06223 malate dehydrogenase; Reviewed

Probab=89.57  E-value=0.48  Score=46.26  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~   38 (445)
                      .+|.|||+|..|...|..|+..|. .|.++|.+..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            479999999999999999999876 9999999654

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=89.55  E-value=0.4  Score=46.62  Aligned_cols=32  Identities=19%  Similarity=0.278  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +|.|||.|.-|...|..|+++|++|++++++.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            69999999999999999999999999999874

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=89.51  E-value=0.39  Score=38.65  Aligned_cols=34  Identities=24%  Similarity=0.254  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ...|+|||+|-.+..-+..|.+.|-+|+|+....
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            4679999999999999999999999999998885

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.49  E-value=0.55  Score=48.38  Aligned_cols=35  Identities=20%  Similarity=0.207  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      ..++|+|.|-+|+++|.+|++.|++|++.|.++..
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP   40 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            46999999999999999999999999999987764

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=89.35  E-value=1.1  Score=48.07  Aligned_cols=57  Identities=21%  Similarity=0.253  Sum_probs=44.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe--CCe--EEEcC-EEEECCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS--EGE--TAKCK-KVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~--~g~--~~~ad-~VI~~~~~~  288 (445)
                      ..+...|.+.++..|++|+++++|++|..+++|+++||..  +|+  ++.|+ .||++.+-+
T Consensus       213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf  274 (584)
T PRK12835        213 QSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGF  274 (584)
T ss_pred             HHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcc
Confidence            4577777778888899999999999999866789999863  443  47787 488765544

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=89.07  E-value=0.37  Score=52.86  Aligned_cols=34  Identities=29%  Similarity=0.332  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|.|||+|..|...|..++.+|++|+++|.++.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            3599999999999999999999999999998853

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=88.96  E-value=0.37  Score=46.48  Aligned_cols=58  Identities=16%  Similarity=0.267  Sum_probs=40.3

Q ss_pred             CCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE--eC-C--eEEEcCEEEECCCC
Q 036458          228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT--SE-G--ETAKCKKVVCDPSY  287 (445)
Q Consensus       228 ~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~--~~-g--~~~~ad~VI~~~~~  287 (445)
                      ..|....+++|.+.++....++.+.....++..+ +.+++ ..  .+ |  +++..+.+-.+|+-
T Consensus       232 iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~-~~~Av-Fe~L~kPG~t~ei~yslLHv~Ppm  294 (446)
T KOG3851|consen  232 IFGVKHYADALEKVIQERNITVNYKRNLIEVRTN-DRKAV-FENLDKPGVTEEIEYSLLHVTPPM  294 (446)
T ss_pred             eecHHHHHHHHHHHHHhcceEeeeccceEEEecc-chhhH-HHhcCCCCceeEEeeeeeeccCCC
Confidence            3577788899999999999999999999988763 33321 11  12 4  45667766666654

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.96  E-value=0.46  Score=48.91  Aligned_cols=34  Identities=24%  Similarity=0.261  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|+|+|+|-.|+++|..|+++|++|++.|++..
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~   39 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF   39 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence            3589999999999999999999999999998753

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.91  E-value=0.5  Score=48.29  Aligned_cols=37  Identities=27%  Similarity=0.416  Sum_probs=32.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      |.. -.|.|||-|.+|.++|.+|.+.|++|...|++..
T Consensus         1 ~~~-~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          1 MGL-QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CCC-CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            444 3699999999999999999999999999998754

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.61  E-value=0.58  Score=48.27  Aligned_cols=38  Identities=26%  Similarity=0.283  Sum_probs=33.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      |.+.--|+|||-|-+|.++|..|.+.|++|++.|.++.
T Consensus         3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~   40 (448)
T PRK03803          3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ   40 (448)
T ss_pred             cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC
Confidence            45555699999999999999999999999999998763

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=88.58  E-value=0.54  Score=45.54  Aligned_cols=32  Identities=28%  Similarity=0.341  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +|.|||.|.-|...|..|++.|++|++++++.
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~   35 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP   35 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            69999999999999999999999999999875

>PRK06849 hypothetical protein; Provisional

Probab=88.57  E-value=0.67  Score=46.84  Aligned_cols=39  Identities=21%  Similarity=0.280  Sum_probs=35.4

Q ss_pred             CCCcccEEEECCCh-hHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            1 MDEDYDVIVLGTGL-KECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         1 m~~~~DViIIGaGl-~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      |++...|+|+|++. .|+..|..|.++|++|.++|.+...
T Consensus         1 ~~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~   40 (389)
T PRK06849          1 MNTKKTVLITGARAPAALELARLFHNAGHTVILADSLKYP   40 (389)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            77788999999998 6999999999999999999998643

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=88.55  E-value=0.47  Score=51.86  Aligned_cols=33  Identities=30%  Similarity=0.310  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHhh-hCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLS-VDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La-~~G~~VlvlE~n~~   38 (445)
                      .|.|||+|..|...|..++ ++|++|+++|.++.
T Consensus       306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~  339 (699)
T TIGR02440       306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ  339 (699)
T ss_pred             EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            5999999999999999998 69999999999853

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=88.48  E-value=1.7  Score=46.30  Aligned_cols=53  Identities=17%  Similarity=0.247  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS  286 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~  286 (445)
                      .|.++|.+.+...|++++.+++|+++..+ +|+++|+..    +|+  .+.|+.||++.+
T Consensus       120 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~AkaVILATG  178 (565)
T TIGR01816       120 AILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAKAVVLATG  178 (565)
T ss_pred             HHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEeCeEEECCC
Confidence            68889988888889999999999999984 889999863    453  578999998754

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=88.44  E-value=0.66  Score=42.28  Aligned_cols=33  Identities=30%  Similarity=0.290  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..++|+|.|--|..+|..|.+.|.+|++.|++.
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            469999999999999999999999999999873

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=88.37  E-value=1.6  Score=44.05  Aligned_cols=35  Identities=26%  Similarity=0.311  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhCC--CeEEEEecCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~   38 (445)
                      .|||+|||||++||++|..|+++|  .+|+|+||++.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            389999999999999999999996  99999999974

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=88.35  E-value=0.52  Score=49.15  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .-.|+|+|+|..||.|+..+...|-+|.++|.++
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999875

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=88.30  E-value=0.52  Score=52.04  Aligned_cols=34  Identities=21%  Similarity=0.103  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCe-EEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLK-VLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~n~~   38 (445)
                      -.|+|||+|..|+-+|..|.+.|.+ |+++++++.
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~  605 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE  605 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            4799999999999999999999987 999998765

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=88.28  E-value=0.51  Score=48.90  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .+|.|||.|.-|...|..|+++|++|.+++++..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999999754

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=88.26  E-value=0.62  Score=39.67  Aligned_cols=32  Identities=19%  Similarity=0.371  Sum_probs=27.8

Q ss_pred             EEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            7 VIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         7 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ++|+|+|.-+..+|..++.-|++|+++|-++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999998843

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=88.25  E-value=0.62  Score=44.99  Aligned_cols=33  Identities=21%  Similarity=0.301  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      ..|+|||+|-+|.++|+.|++.|. +|++++|+.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            469999999999999999999996 899999974

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=88.16  E-value=0.72  Score=45.73  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=30.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCC-eEEEEecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRN   36 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n   36 (445)
                      ...|+|||+|--|+.+|..|+++|. +++++|..
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            3579999999999999999999998 99999984

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=88.16  E-value=0.49  Score=51.77  Aligned_cols=33  Identities=36%  Similarity=0.283  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHhh-hCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLS-VDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La-~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|..|...|..++ ++|++|+++|.+.
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            35999999999999999999 9999999999875

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=88.10  E-value=0.29  Score=46.71  Aligned_cols=31  Identities=16%  Similarity=0.065  Sum_probs=25.2

Q ss_pred             cccEEEECCChhHHHHHHHhhhCC-------CeEEEEe
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDG-------LKVLHMD   34 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G-------~~VlvlE   34 (445)
                      ..+++|||+|+.||+.|..+++.+       .+|++++
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~   40 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVIS   40 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEec
Confidence            468999999999999998888755       3566664

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=88.07  E-value=0.75  Score=44.71  Aligned_cols=34  Identities=29%  Similarity=0.335  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ...|+|||.|-.|..+|..|.+.|.+|++++++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3579999999999999999999999999999985

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=88.01  E-value=0.97  Score=34.95  Aligned_cols=32  Identities=34%  Similarity=0.440  Sum_probs=29.2

Q ss_pred             cccEEEECCChhHHHHHHHhhhC-CCeEEEEec
Q 036458            4 DYDVIVLGTGLKECILSGVLSVD-GLKVLHMDR   35 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~   35 (445)
                      ...++|+|+|-.|..+|.+|.+. +.+|.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            35799999999999999999998 689999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK12839 hypothetical protein; Provisional

Probab=87.98  E-value=1.7  Score=46.35  Aligned_cols=58  Identities=22%  Similarity=0.329  Sum_probs=44.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe---CCe-EE-EcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS---EGE-TA-KCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~---~g~-~~-~ad~VI~~~~~~p  289 (445)
                      ..|.+.|.+.+...|++|+++++|++|..+++|+++||..   +|+ ++ .++.||++.+-+.
T Consensus       214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~  276 (572)
T PRK12839        214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFP  276 (572)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence            4678888888888999999999999998755788999863   343 34 4578888776553

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.97  E-value=0.6  Score=48.58  Aligned_cols=33  Identities=30%  Similarity=0.354  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|+|.|-+|+++|..|.+.|.+|++.|++.
T Consensus        16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141         16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            359999999999999999999999999999764

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=87.84  E-value=0.85  Score=39.29  Aligned_cols=33  Identities=24%  Similarity=0.355  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCC-CeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~   37 (445)
                      ..++|+|+|..|...|..|++.| ++|.+++++.
T Consensus        20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            46999999999999999999996 8999999874

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.63  E-value=0.66  Score=47.97  Aligned_cols=32  Identities=19%  Similarity=0.133  Sum_probs=28.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|+|+|.|.+|.++|..|.+ |.+|++.|.+.
T Consensus         7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~   38 (454)
T PRK01368          7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDLK   38 (454)
T ss_pred             CEEEEEeecHHHHHHHHHHhC-CCEEEEECCCC
Confidence            469999999999999999995 99999999653

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=87.61  E-value=0.71  Score=46.92  Aligned_cols=34  Identities=18%  Similarity=0.111  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      -.|+|+|+|.-|+.+|..|...|.+|+++|.++.
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            4699999999999999999999999999998753

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=87.59  E-value=0.77  Score=44.80  Aligned_cols=33  Identities=30%  Similarity=0.447  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      ..|.|||+|..|.+.|..|++.|.  +|.+++++.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            369999999999999999999994  899999875

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=87.58  E-value=0.71  Score=44.90  Aligned_cols=32  Identities=16%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +|.|||.|.-|...|..|+++|++|.+++++.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~   33 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ   33 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999985

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=87.57  E-value=0.81  Score=38.67  Aligned_cols=33  Identities=21%  Similarity=0.396  Sum_probs=29.3

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCC-eEEEEecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRN   36 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n   36 (445)
                      +..|+|+|+|-.|+.+|..|++.|. +++++|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            4579999999999999999999997 79999876

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=87.54  E-value=1.7  Score=45.63  Aligned_cols=57  Identities=19%  Similarity=0.140  Sum_probs=43.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CC--eEEEcCEEEECCCCCCc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EG--ETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g--~~~~ad~VI~~~~~~p~  290 (445)
                      ..+..++++.+...|++++.+++|++|..+ ++. +++..    +|  .+++|+.||.+.+.|..
T Consensus       155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~  217 (508)
T PRK12266        155 ARLVVLNARDAAERGAEILTRTRVVSARRE-NGL-WHVTLEDTATGKRYTVRARALVNAAGPWVK  217 (508)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CCE-EEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence            467778888888999999999999999873 443 34442    24  37899999999988754

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=87.52  E-value=1.6  Score=45.90  Aligned_cols=55  Identities=24%  Similarity=0.193  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe---CC--eEEEcCEEEECCCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS---EG--ETAKCKKVVCDPSYL  288 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~---~g--~~~~ad~VI~~~~~~  288 (445)
                      .+.+.|.+.++..|++++++++|++|.. +++++++|..   ++  .++.|+.||++.+-+
T Consensus       191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~  250 (506)
T PRK06481        191 YLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGF  250 (506)
T ss_pred             HHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence            5888898888999999999999999987 4788888763   32  368999999876533

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=87.32  E-value=0.83  Score=45.29  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      +..|+|||+|--|+.+|..|+++|. +++++|...
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            3579999999999999999999997 899998863

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=87.28  E-value=0.89  Score=40.46  Aligned_cols=31  Identities=19%  Similarity=0.253  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHhhhCCC-eEEEEecC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGL-KVLHMDRN   36 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n   36 (445)
                      .|+|||+|-.|+..|..|++.|. +++++|..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D   32 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD   32 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            48999999999999999999997 59999986

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=87.20  E-value=0.94  Score=40.88  Aligned_cols=32  Identities=25%  Similarity=0.368  Sum_probs=29.2

Q ss_pred             ccEEEECC-ChhHHHHHHHhhhCCCeEEEEecC
Q 036458            5 YDVIVLGT-GLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         5 ~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      ..++|+|+ |-.|..+|..|++.|++|+++.|+
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            46999995 999999999999999999999876

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=87.20  E-value=0.8  Score=44.28  Aligned_cols=34  Identities=26%  Similarity=0.350  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|+|||+|-.|..+|..|...|.+|++++|+..
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4699999999999999999999999999999753

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.15  E-value=0.68  Score=48.51  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|+|.|.+|+++|.+|.+.|++|...|.+.
T Consensus         8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            369999999999999999999999999999875

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=87.05  E-value=0.92  Score=45.54  Aligned_cols=37  Identities=16%  Similarity=0.316  Sum_probs=32.5

Q ss_pred             CCCcccEEEECC-ChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            1 MDEDYDVIVLGT-GLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      |.++..|+|.|+ |.-|..++..|.++|++|+.+++..
T Consensus        18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         18 PSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            345568999998 9999999999999999999999753

>PRK08401 L-aspartate oxidase; Provisional

Probab=87.04  E-value=2.2  Score=44.31  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +||+|||+|++||+||..++++|.+|+|+||..
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~   34 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI   34 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            799999999999999999999999999999985

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=86.90  E-value=0.6  Score=44.88  Aligned_cols=42  Identities=26%  Similarity=0.281  Sum_probs=36.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSL   46 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~   46 (445)
                      ..|+|+|.|+-|-+.|..|.++|+.|.++.+....+...+..
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~   45 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL   45 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh
Confidence            469999999999999999999999999999998875554443

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=86.78  E-value=1  Score=44.13  Aligned_cols=35  Identities=20%  Similarity=0.323  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCC--eEEEEecCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~~   38 (445)
                      ..+|.|||+|-.|.++|+.|+..|.  .+.++|.|.-
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            4689999999999999999999997  8999998643

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=86.72  E-value=0.97  Score=43.25  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..++|+|+|-.|.++|..|++.|.+|++++|+.
T Consensus       118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~  150 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTV  150 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999998863

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR00292 thiazole biosynthesis enzyme

Probab=86.68  E-value=2.7  Score=39.86  Aligned_cols=56  Identities=18%  Similarity=0.112  Sum_probs=43.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCC-cEEEEEeC------------CeEEEcCEEEECCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDG-KVIGVTSE------------GETAKCKKVVCDPSY  287 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g-~~~~v~~~------------g~~~~ad~VI~~~~~  287 (445)
                      .++.+.|.+.+...|++++.++.|+++..++++ ++.||..+            ..+++|+.||.+.+.
T Consensus       100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~  168 (254)
T TIGR00292       100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH  168 (254)
T ss_pred             HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence            477888888888899999999999999885332 67787642            247899999987653

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=86.65  E-value=2  Score=46.09  Aligned_cols=40  Identities=23%  Similarity=0.256  Sum_probs=36.8

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      .++||||||+|++||.||..++++|.+|+|+||....||.
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~   50 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH   50 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence            4689999999999999999999999999999998877764

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=86.61  E-value=2.2  Score=43.15  Aligned_cols=56  Identities=18%  Similarity=0.200  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL  288 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~  288 (445)
                      .+-+.|++.+++.|++++.++.|+.+..++++.+.++..++.+++|+.||.+.+..
T Consensus        96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~  151 (396)
T COG0644          96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN  151 (396)
T ss_pred             HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence            45566788889999999999999999986455555555666889999999987643

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=86.61  E-value=1.2  Score=38.13  Aligned_cols=33  Identities=27%  Similarity=0.450  Sum_probs=29.6

Q ss_pred             cEEEECC-ChhHHHHHHHhhhCCC--eEEEEecCCC
Q 036458            6 DVIVLGT-GLKECILSGVLSVDGL--KVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGa-Gl~Gl~aA~~La~~G~--~VlvlE~n~~   38 (445)
                      +|.|||+ |..|.++|..|...|.  ++.++|.+..
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~   37 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED   37 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence            6899999 9999999999998874  7999999954

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=86.51  E-value=0.74  Score=47.44  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      +|+|+|+|-.|..+|..|.+.|++|+++|+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            599999999999999999999999999999754

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=86.51  E-value=2.7  Score=42.40  Aligned_cols=54  Identities=19%  Similarity=0.238  Sum_probs=40.9

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSY  287 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~  287 (445)
                      ...+.+.+.++.....-..+.+|++|.. +++++++|.+ +|+.+.||.||.+.+.
T Consensus        96 ~y~~~~~~~l~~~~nl~i~~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   96 KYSRAMREKLESHPNLTIIQGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             HHHHHHHHHHHTSTTEEEEES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             HHHHHHHHHHhcCCCeEEEEcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence            4456666677776665557899999998 5899999985 7899999999988765

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=86.45  E-value=2.2  Score=42.75  Aligned_cols=34  Identities=35%  Similarity=0.446  Sum_probs=32.4

Q ss_pred             cEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYY   39 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~   39 (445)
                      ||+|||||++||++|..|+++| ++|+|+||.+.+
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            8999999999999999999999 999999999764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PTZ00117 malate dehydrogenase; Provisional

Probab=86.28  E-value=1.1  Score=44.05  Aligned_cols=34  Identities=12%  Similarity=0.117  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHhhhCC-CeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~   37 (445)
                      ..+|.|||+|-.|.++|..|+..| .++.++|.+.
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~   39 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK   39 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence            468999999999999999999999 6899999875

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=86.26  E-value=1  Score=35.27  Aligned_cols=32  Identities=22%  Similarity=0.357  Sum_probs=28.5

Q ss_pred             cEEEECCChhHHHHHHHhhhCC---CeEEEE-ecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG---LKVLHM-DRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G---~~Vlvl-E~n~   37 (445)
                      .+.|||+|--|.+.+..|.++|   .+|++. ++++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~   36 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP   36 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence            3789999999999999999999   999966 8774

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK06175 L-aspartate oxidase; Provisional

Probab=86.24  E-value=2.3  Score=43.67  Aligned_cols=55  Identities=11%  Similarity=0.043  Sum_probs=42.3

Q ss_pred             chHHHHHHHHHHH-cCcEEEeCCcceeEEEcCCCcEEEEE--eCCe--EEEcCEEEECCCC
Q 036458          232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDGDGKVIGVT--SEGE--TAKCKKVVCDPSY  287 (445)
Q Consensus       232 ~~L~q~l~r~~~~-~Gg~i~l~~~V~~I~~~~~g~~~~v~--~~g~--~~~ad~VI~~~~~  287 (445)
                      .++.+.|.+.++. .|++++++++|++|..+ ++++.+|.  .+++  ++.|+.||.+.+-
T Consensus       128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG  187 (433)
T PRK06175        128 KKVEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGG  187 (433)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence            3688888877765 48999999999999874 67788864  3444  5899999987653

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=85.95  E-value=1.3  Score=41.84  Aligned_cols=36  Identities=19%  Similarity=0.184  Sum_probs=32.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ....++|+|+|.-+..+|..++..|++|+|+|-++.
T Consensus        99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            346899999999999999999999999999996654

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=85.92  E-value=2.4  Score=45.11  Aligned_cols=56  Identities=20%  Similarity=0.324  Sum_probs=44.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe--CCe--EEEcC-EEEECCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS--EGE--TAKCK-KVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~--~g~--~~~ad-~VI~~~~~~  288 (445)
                      ..|.+.|.+.++..|++++++++|++|+.+ ++++++|..  +|+  .+.|+ .||++.+-+
T Consensus       208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~  268 (557)
T PRK12844        208 AALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGGF  268 (557)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCCc
Confidence            467888888888999999999999999984 788999864  453  47785 577765443

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=85.89  E-value=1  Score=41.85  Aligned_cols=33  Identities=15%  Similarity=0.386  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC---eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL---KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~---~VlvlE~n~   37 (445)
                      ..|+|+|+|=+|..+|..|.+.|.   ++.++||+.
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            479999999999999999999996   599999983

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=85.88  E-value=2.6  Score=44.20  Aligned_cols=58  Identities=16%  Similarity=0.102  Sum_probs=44.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CC----eEEEcCEEEECCCCCCcc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EG----ETAKCKKVVCDPSYLPDK  291 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g----~~~~ad~VI~~~~~~p~~  291 (445)
                      ..+..++...++..|++++.+++|++|..+ ++. ++|.. ++    .+++|+.||.+.+.|.+.
T Consensus       155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~  217 (502)
T PRK13369        155 ARLVVLNALDAAERGATILTRTRCVSARRE-GGL-WRVETRDADGETRTVRARALVNAAGPWVTD  217 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CCE-EEEEEEeCCCCEEEEEecEEEECCCccHHH
Confidence            467777888888999999999999999874 443 44542 32    368999999999887543

>PRK08275 putative oxidoreductase; Provisional

Probab=85.81  E-value=2.7  Score=44.68  Aligned_cols=39  Identities=18%  Similarity=0.281  Sum_probs=34.9

Q ss_pred             cccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCCc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGGE   42 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG~   42 (445)
                      ++||||||+|++||.||..++++  |.+|+++||.+..+|.
T Consensus         9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g   49 (554)
T PRK08275          9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSG   49 (554)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCC
Confidence            58999999999999999999987  7899999999985443

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=85.78  E-value=1  Score=43.83  Aligned_cols=32  Identities=25%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +|.|||.|.-|...|..|+++|++|.+++++.
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~   33 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP   33 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence            58999999999999999999999999999874

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=85.76  E-value=0.82  Score=47.40  Aligned_cols=33  Identities=18%  Similarity=0.087  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .+|+|||+|.+|+=.|..|++.+++|+++.+..
T Consensus       205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            469999999999999999999999999999865

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=85.66  E-value=2.2  Score=45.48  Aligned_cols=55  Identities=24%  Similarity=0.272  Sum_probs=44.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPS  286 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~  286 (445)
                      ..|.++|.+.+...|.+++.++.++++..+++|+++|+..    +|+  .+.|+.||++.+
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  186 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATG  186 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCC
Confidence            4688889888888899999999999999855789999863    453  578999998754

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=85.64  E-value=2.9  Score=44.71  Aligned_cols=57  Identities=19%  Similarity=0.283  Sum_probs=45.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe---CCe-EEEcC-EEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS---EGE-TAKCK-KVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~---~g~-~~~ad-~VI~~~~~~p  289 (445)
                      .+|.++|.+.++..|++++++++|+++..+ ++++++|..   +++ .+.++ .||++.+-++
T Consensus       214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~  275 (574)
T PRK12842        214 NALAARLAKSALDLGIPILTGTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFS  275 (574)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence            578888988889999999999999999984 788888763   233 47785 6888776554

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=85.59  E-value=1.2  Score=43.17  Aligned_cols=33  Identities=18%  Similarity=0.283  Sum_probs=29.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCe-EEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLK-VLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~n~   37 (445)
                      ..|+|+|+|=+|.++|..|++.|.+ |+++.|+.
T Consensus       127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            4689999999999999999999986 99999874

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=85.57  E-value=1.2  Score=40.66  Aligned_cols=31  Identities=23%  Similarity=0.242  Sum_probs=27.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      .+.|+|+|--|.+.|.+|+++|++|.+-=++
T Consensus         3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r   33 (211)
T COG2085           3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSR   33 (211)
T ss_pred             EEEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence            4899999999999999999999999997443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	445
1gnd_A	447	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		1e-154
1lv0_A	449	Crystal Structure Of The Rab Effector Guanine Nucle		1e-153
1d5t_A	433	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		1e-153
3cph_G	451	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-137
1ukv_G	453	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-136
3p1w_A	475	Crystal Structure Of Rab Gdi From Plasmodium Falcip		1e-124
1ltx_R	650	Structure Of Rab Escort Protein-1 In Complex With R		6e-26
1vg0_A	650	The Crystal Structures Of The Rep-1 Protein In Comp		7e-26

>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 447

Iteration: 1
 Score =  540 bits (1390), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 250/433 (57%), Positives = 337/433 (77%), Gaps = 3/433 (0%)
Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
           MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF+  +
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60  KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
            PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSFVY  GKIYKVP
Sbjct: 61  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
           +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+  D YL++P ++ + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
           RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+V+K G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 298
Query: 300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
           R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA  ST  E
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 358
Query: 360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
           T +PE E++P ++LL P+D+ F    D + P ++      F S SYDATTHFE+T  D+ 
Sbjct: 359 TTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIK 418
Query: 420 EMYTKITGKAVDL 432
           ++Y ++ G A D 
Sbjct: 419 DIYKRMAGSAFDF 431

>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide Dissociation Inhibitor (Gdi) In Complex With A Geranylgeranyl (Gg) Peptide Length = 449

Iteration: 1
 Score =  539 bits (1389), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 250/433 (57%), Positives = 337/433 (77%), Gaps = 3/433 (0%)
Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
           MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF+  +
Sbjct: 3   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62
Query: 60  KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
            PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSFVY  GKIYKVP
Sbjct: 63  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122
Query: 120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
           +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182
Query: 180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+  D YL++P ++ + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 241
Query: 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
           RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+V+K G+V 
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 300
Query: 300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
           R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA  ST  E
Sbjct: 301 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 360
Query: 360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
           T +PE E++P ++LL P+D+ F    D + P ++      F S SYDATTHFE+T  D+ 
Sbjct: 361 TTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIK 420
Query: 420 EMYTKITGKAVDL 432
           ++Y ++ G A D 
Sbjct: 421 DIYKRMAGSAFDF 433

>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 433

Iteration: 1
 Score =  538 bits (1386), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 250/433 (57%), Positives = 336/433 (77%), Gaps = 3/433 (0%)
Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
           MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF+  +
Sbjct: 3   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62
Query: 60  KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
            PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSFVY  GKIYKVP
Sbjct: 63  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122
Query: 120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
           +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182
Query: 180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+  D YL++P ++ + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 241
Query: 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
           RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+V+K G+V 
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 300
Query: 300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
           R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA  ST  E
Sbjct: 301 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 360
Query: 360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
           T +PE E++P + LL P+D+ F    D + P ++      F S SYDATTHFE+T  D+ 
Sbjct: 361 TTDPEKEVEPALGLLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIK 420
Query: 420 EMYTKITGKAVDL 432
           ++Y ++ G A D 
Sbjct: 421 DIYKRMAGSAFDF 433

>pdb|3CPH|G Chain G, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 451

Iteration: 1
 Score =  483 bits (1243), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 231/438 (52%), Positives = 321/438 (73%), Gaps = 7/438 (1%)
Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGD-- 58
           +D DYDVIVLGTG+ ECILSG+LSVDG KVLH+D+  +YGGE+ S+ L+QL+++FK +  
Sbjct: 6   IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 65
Query: 59  --DKPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIY 116
             ++   + G  +++NVD+IPKF+MANG L  ILIHTDVT+Y++FK V GS+V+ +GKIY
Sbjct: 66  SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 125
Query: 117 KVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGL 176
           KVPA ++EA+ SPLMG+FEKRR +KF  ++  Y+EDD  +H+GLDL+K T  E+  K+GL
Sbjct: 126 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 185
Query: 177 EDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQ 236
            + T +FIGHA+AL  ND YL++PA    +RI LY +S+AR+ G SPY+YP+YGLGELPQ
Sbjct: 186 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ 244
Query: 237 AFARLSAVYGGTYMLNKPECKVEFDGD-GKVIGVTSEGETAKCKKVVCDPSYLPDKVQKV 295
            FARLSA+YGGTYML+ P  +V +  D GK  GV ++  T K   V+ DP+Y P+K +  
Sbjct: 245 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKST 304
Query: 296 G-KVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFV 354
           G +V RAICI+NHP+P+T+++ S Q+I+PQ QLGRKSD+Y+   S AHNV   G Y+A +
Sbjct: 305 GQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAII 364
Query: 355 STEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFEST 414
           ST  ETD P +EL+P   LLGP++E F    + F P  +   D+ ++S SYDA++HFES 
Sbjct: 365 STIIETDKPHIELEPAFKLLGPIEEKFMGIAELFEPREDGSKDNIYLSRSYDASSHFESM 424
Query: 415 VQDVLEMYTKITGKAVDL 432
             DV ++Y ++TG  + L
Sbjct: 425 TDDVKDIYFRVTGHPLVL 442

>pdb|1UKV|G Chain G, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 453

Iteration: 1
 Score =  483 bits (1242), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/438 (52%), Positives = 321/438 (73%), Gaps = 7/438 (1%)
Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGD-- 58
           +D DYDVIVLGTG+ ECILSG+LSVDG KVLH+D+  +YGGE+ S+ L+QL+++FK +  
Sbjct: 8   IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 67
Query: 59  --DKPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIY 116
             ++   + G  +++NVD+IPKF+MANG L  ILIHTDVT+Y++FK V GS+V+ +GKIY
Sbjct: 68  SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 127
Query: 117 KVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGL 176
           KVPA ++EA+ SPLMG+FEKRR +KF  ++  Y+EDD  +H+GLDL+K T  E+  K+GL
Sbjct: 128 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 187
Query: 177 EDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQ 236
            + T +FIGHA+AL  ND YL++PA    +RI LY +S+AR+ G SPY+YP+YGLGELPQ
Sbjct: 188 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ 246
Query: 237 AFARLSAVYGGTYMLNKPECKVEFDGD-GKVIGVTSEGETAKCKKVVCDPSYLPDKVQKV 295
            FARLSA+YGGTYML+ P  +V +  D GK  GV ++  T K   V+ DP+Y P+K +  
Sbjct: 247 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKST 306
Query: 296 G-KVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFV 354
           G +V RAICI+NHP+P+T+++ S Q+I+PQ QLGRKSD+Y+   S AHNV   G Y+A +
Sbjct: 307 GQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAII 366
Query: 355 STEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFEST 414
           ST  ETD P +EL+P   LLGP++E F    + F P  +   D+ ++S SYDA++HFES 
Sbjct: 367 STIIETDKPHIELEPAFKLLGPIEEKFMGIAELFEPREDGSKDNIYLSRSYDASSHFESM 426
Query: 415 VQDVLEMYTKITGKAVDL 432
             DV ++Y ++TG  + L
Sbjct: 427 TDDVKDIYFRVTGHPLVL 444

>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum, Pfl2060c Length = 475

Iteration: 1
 Score =  442 bits (1136), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/443 (48%), Positives = 308/443 (69%), Gaps = 14/443 (3%)
Query: 3   EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPP 62
           E YDVI+LGTGLKECILSG+LS  G K+L +DRN YYGGE+ SLNLT L+  FK  +  P
Sbjct: 19  EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIP 78
Query: 63  ERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGK-------- 114
            + G ++ +NVD+IPKF++  G LV+IL  T VT YL +  V+GS+VY   K        
Sbjct: 79  SKYGENRHWNVDLIPKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEK 138
Query: 115 -IYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISK 173
            I+KVPATD+EAL SPL+ L EK R + F+ YV E++ +   + + LD  K+T  EI   
Sbjct: 139 FIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIYKH 198
Query: 174 YGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGE 233
           + L   TIDF+GHA+AL++ND YL++PA   ++RIKLY +S++ F G SP+IYPLYGLG 
Sbjct: 199 FNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAF-GKSPFIYPLYGLGG 257
Query: 234 LPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGV-TSEGETAKCKKVVCDPSY---LP 289
           +P+ F+R+ A+ GGT+MLNK      FD D KV G+ +S+GE A C KV+CDPSY   L 
Sbjct: 258 IPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMHLK 317
Query: 290 DKVQKVGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQ 349
           +K++K+G+V R ICI+++PIP+TN ++SCQ+I+PQ QL RKSD+Y+   S+ H V   G+
Sbjct: 318 NKIKKIGQVIRCICILSNPIPETNQTNSCQIIIPQNQLNRKSDIYINLVSFQHGVTLKGK 377
Query: 350 YIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATT 409
           YIA VS   ET+NP  E++  ++LLG ++E F    D +V T+   AD+ F+++SYDAT+
Sbjct: 378 YIAIVSATVETNNPIKEIEKPLELLGTIEEKFVKISDLYVSTSKKPADNIFVTSSYDATS 437
Query: 410 HFESTVQDVLEMYTKITGKAVDL 432
           HFE+   D+L+++  + G+ ++ 
Sbjct: 438 HFETATNDLLQIWENLWGQKLNF 460

>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid Length = 650

Iteration: 1
 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 142/280 (50%), Gaps = 19/280 (6%)
Query: 69  KEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKS 128
           + +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G + +VP +  +   S
Sbjct: 222 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNS 281
Query: 129 PLMGLFEKRRARKFFIYVQEYEE--DDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGH 186
             + + EKR   KF  +  EYEE  D+ +++EG      T  E +    L  +   F+ H
Sbjct: 282 KQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLH 336
Query: 187 ALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYG 246
           ++A+    S      +D +K  K + + L R+ G +P+++PLYG GELPQ F R+ AV+G
Sbjct: 337 SIAM---TSETTSCTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFG 392
Query: 247 GTYMLNKP-ECKVEFDGDGKVIGVTSE-GETAKCKKVVCDPSYLPD----KVQKVGKVAR 300
           G Y L    +C V      K   V  + G+    K  + + SYL +    +VQ   +++R
Sbjct: 393 GIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQ-YRQISR 451
Query: 301 AICIMNHPIPDTNDSHSCQVI-LPQKQLGRKSDMYLFCCS 339
           A+ I +  +  T+      ++ +P ++ G  +   +  CS
Sbjct: 452 AVLITDGSVLKTDADQQVSILTVPAEEPGSFAVRVIELCS 491

>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 650

Iteration: 1
 Score =  115 bits (287), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 142/280 (50%), Gaps = 19/280 (6%)
Query: 69  KEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKS 128
           + +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G + +VP +  +   S
Sbjct: 222 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNS 281
Query: 129 PLMGLFEKRRARKFFIYVQEYEE--DDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGH 186
             + + EKR   KF  +  EYEE  D+ +++EG      T  E +    L  +   F+ H
Sbjct: 282 KQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLH 336
Query: 187 ALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYG 246
           ++A+    S      +D +K  K + + L R+ G +P+++PLYG GELPQ F R+ AV+G
Sbjct: 337 SIAM---TSETTSCTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFG 392
Query: 247 GTYMLNKP-ECKVEFDGDGKVIGVTSE-GETAKCKKVVCDPSYLPD----KVQKVGKVAR 300
           G Y L    +C V      K   V  + G+    K  + + SYL +    +VQ   +++R
Sbjct: 393 GIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQ-YRQISR 451
Query: 301 AICIMNHPIPDTNDSHSCQVI-LPQKQLGRKSDMYLFCCS 339
           A+ I +  +  T+      ++ +P ++ G  +   +  CS
Sbjct: 452 AVLITDGSVLRTDADQQVSILTVPAEEPGSFAVRVIELCS 491

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	445
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	1e-176
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	1e-169
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	1e-163
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	1e-128
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	9e-25
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	4e-10
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	7e-08
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	2e-07
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	5e-05
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	1e-04
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	6e-04

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score =  498 bits (1284), Expect = e-176
 Identities = 230/439 (52%), Positives = 319/439 (72%), Gaps = 7/439 (1%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRF----K 56
           +D DYDVIVLGTG+ ECILSG+LSVDG KVLH+D+  +YGGE+ S+ L+QL+++F     
Sbjct: 8   IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 67

Query: 57  GDDKPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIY 116
             ++   + G  +++NVD+IPKF+MANG L  ILIHTDVT+Y++FK V GS+V+ +GKIY
Sbjct: 68  SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 127

Query: 117 KVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGL 176
           KVPA ++EA+ SPLMG+FEKRR +KF  ++  Y+EDD  +H+GLDL+K T  E+  K+GL
Sbjct: 128 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 187

Query: 177 EDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQ 236
            + T +FIGHA+AL  ND YL++PA    +RI LY +S+AR+ G SPY+YP+YGLGELPQ
Sbjct: 188 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ 246

Query: 237 AFARLSAVYGGTYMLNKPECKVEFDGD-GKVIGVTSEGETAKCKKVVCDPSYLPDKVQKV 295
            FARLSA+YGGTYML+ P  +V +  D GK  GV ++  T K   V+ DP+Y P+K +  
Sbjct: 247 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKST 306

Query: 296 G-KVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFV 354
           G +V RAICI+NHP+P+T+++ S Q+I+PQ QLGRKSD+Y+   S AHNV   G Y+A +
Sbjct: 307 GQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAII 366

Query: 355 STEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFEST 414
           ST  ETD P +EL+P   LLGP++E F    + F P  +   D+ ++S SYDA++HFES 
Sbjct: 367 STIIETDKPHIELEPAFKLLGPIEEKFMGIAELFEPREDGSKDNIYLSRSYDASSHFESM 426

Query: 415 VQDVLEMYTKITGKAVDLS 433
             DV ++Y ++TG  + L 
Sbjct: 427 TDDVKDIYFRVTGHPLVLK 445

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score =  482 bits (1241), Expect = e-169
 Identities = 250/433 (57%), Positives = 336/433 (77%), Gaps = 3/433 (0%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDD 59
           MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  L +L+KRF+  +
Sbjct: 3   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62

Query: 60  KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
            PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSFVY  GKIYKVP
Sbjct: 63  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122

Query: 120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
           +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182

Query: 180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+  D YL++P ++ + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 241

Query: 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVA 299
           RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+V+K G+V 
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 300

Query: 300 RAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAE 359
           R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA  ST  E
Sbjct: 301 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVE 360

Query: 360 TDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDATTHFESTVQDVL 419
           T +PE E++P + LL P+D+ F    D + P ++      F S SYDATTHFE+T  D+ 
Sbjct: 361 TTDPEKEVEPALGLLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIK 420

Query: 420 EMYTKITGKAVDL 432
           ++Y ++ G A D 
Sbjct: 421 DIYKRMAGSAFDF 433

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score =  467 bits (1202), Expect = e-163
 Identities = 215/446 (48%), Positives = 306/446 (68%), Gaps = 14/446 (3%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDK 60
             E YDVI+LGTGLKECILSG+LS  G K+L +DRN YYGGE+ SLNLT L+  FK  + 
Sbjct: 17  QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKEN 76

Query: 61  PPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGK------ 114
            P + G ++ +NVD+IPKF++  G LV+IL  T VT YL +  V+GS+VY   K      
Sbjct: 77  IPSKYGENRHWNVDLIPKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTS 136

Query: 115 ---IYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREII 171
              I+KVPATD+EAL SPL+ L EK R + F+ YV E++ +   + + LD  K+T  EI 
Sbjct: 137 EKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIY 196

Query: 172 SKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGL 231
             + L   TIDF+GHA+AL++ND YL++PA   ++RIKLY +S++ F G SP+IYPLYGL
Sbjct: 197 KHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAF-GKSPFIYPLYGL 255

Query: 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSE-GETAKCKKVVCDPSYLP- 289
           G +P+ F+R+ A+ GGT+MLNK      FD D KV G+ S  GE A C KV+CDPSY+  
Sbjct: 256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMH 315

Query: 290 --DKVQKVGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPN 347
             +K++K+G+V R ICI+++PIP+TN ++SCQ+I+PQ QL RKSD+Y+   S+ H V   
Sbjct: 316 LKNKIKKIGQVIRCICILSNPIPETNQTNSCQIIIPQNQLNRKSDIYINLVSFQHGVTLK 375

Query: 348 GQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHCFISTSYDA 407
           G+YIA VS   ET+NP  E++  ++LLG ++E F    D +V T+   AD+ F+++SYDA
Sbjct: 376 GKYIAIVSATVETNNPIKEIEKPLELLGTIEEKFVKISDLYVSTSKKPADNIFVTSSYDA 435

Query: 408 TTHFESTVQDVLEMYTKITGKAVDLS 433
           T+HFE+   D+L+++  + G+ ++  
Sbjct: 436 TSHFETATNDLLQIWENLWGQKLNFD 461

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score =  385 bits (988), Expect = e-128
 Identities = 81/436 (18%), Positives = 168/436 (38%), Gaps = 42/436 (9%)

Query: 27  GLKVLHMDRNAYYGG-------ESTSLNLTQLW----KRFKGDDKPPERLGSSKEYNVDM 75
             +V   +              E  S N+ ++        K      + +   + +N+D+
Sbjct: 169 SPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDL 228

Query: 76  IPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFE 135
           + K + + G L+ +LI ++V++Y  FK +     + +G + +VP +  +   S  + + E
Sbjct: 229 VSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVE 288

Query: 136 KRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDS 195
           KR   KF  +  EYEE   +          T  E +    L  +   F+ H++A+    +
Sbjct: 289 KRMLMKFLTFCVEYEEHPDEYR---AYEGTTFSEYLKTQKLTPNLQYFVLHSIAMTSETT 345

Query: 196 YLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPE 255
                 +D +K  K + + L R+ G +P+++PLYG GELPQ F R+ AV+GG Y L    
Sbjct: 346 S---CTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSV 401

Query: 256 CKVEFDGDGKVIG--VTSEGETAKCKKVVCDPSYLPDKVQK---VGKVARAICIMNHPIP 310
             +  D + +     +   G+    K  + + SYL +         +++RA+ I +  + 
Sbjct: 402 QCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRAVLITDGSVL 461

Query: 311 DTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPG 370
            T+      ++    +      + +     +      G Y+  ++  +     E   +  
Sbjct: 462 RTDADQQVSILTVPAEEPGSFAVRVIELCSSTMTCMKGTYLVHLTCMSSKTAREDLERVV 521

Query: 371 IDLLGPVDEIFFDTYDRFVPT-------------------NNHEADHCFISTSYDATTHF 411
             L  P  EI  +      P                     N    + ++ +  D+    
Sbjct: 522 QKLFTPYTEIEAENEQVEKPRLLWALYFNMRDSSDISRDCYNDLPSNVYVCSGPDSGLGN 581

Query: 412 ESTVQDVLEMYTKITG 427
           ++ V+    ++ +I  
Sbjct: 582 DNAVKQAETLFQQICP 597

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score =  106 bits (264), Expect = 9e-25
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 9/163 (5%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDK 60
           +  D+DVIV+GTGL E I++   S  G +VLH+D  +YYGG   S + + L    K   +
Sbjct: 5   LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQE 64

Query: 61  PPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNF----KAVDGSFVYNKGKIY 116
             + +  +  +   ++      N   + +       +++             V   G + 
Sbjct: 65  NNDVVTENSMWQEQILE-----NEEAIPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQ 119

Query: 117 KVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEG 159
           K  A+   A  +      E          +     + P     
Sbjct: 120 KNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQ 162

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 50/294 (17%), Positives = 92/294 (31%), Gaps = 43/294 (14%)

Query: 1   MDEDYDVIVLGTGLKECILSGV-----LSVDGLKVL---HMDRNAYYGGESTSLNLTQLW 52
           M    DV+V+G G+     SG+     L   GL V+     DR    GG        + +
Sbjct: 1   MSNKCDVVVVGGGI-----SGMAAAKLLHDSGLNVVVLEARDR---VGG--------RTY 44

Query: 53  KRFKGDDKPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNK 112
                  K  +  GS           ++      +  L      +      V+    + K
Sbjct: 45  TLRNQKVKYVDLGGS-----------YVGPTQNRILRLAKELGLETYKVNEVERLIHHVK 93

Query: 113 GKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLD-LNKVTAREII 171
           GK Y           +P+  L      R      +E   D P      +  + +T +E++
Sbjct: 94  GKSYPFRGPFPPVW-NPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELL 152

Query: 172 SKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYA--ESLARFQGGSPYIYPLY 229
            K    +         + L +     E  A+ F+  +K       +     G      + 
Sbjct: 153 DKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVG 212

Query: 230 GLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVC 283
           G G++ +       + G    L +P   ++   +  V+  T   E  + K V+ 
Sbjct: 213 GSGQVSERIM---DLLGDRVKLERPVIYIDQTREN-VLVETLNHEMYEAKYVIS 262

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 49/390 (12%), Positives = 110/390 (28%), Gaps = 79/390 (20%)

Query: 6   DVIVLGTGLKECILSG-----VLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDK 60
             +V+G GL      G      L+ +G +++ ++++A  GG                   
Sbjct: 2   RAVVVGAGL-----GGLLAGAFLARNGHEIIVLEKSAMIGG------RFTNLPY------ 44

Query: 61  PPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTK----YLNFKAVDGSFVYN-KGKI 115
                   K + +      M+             + +     +     +       +GKI
Sbjct: 45  --------KGFQLSTGALHMI---PHGEDGPLAHLLRILGAKVEIVNSNPKGKILWEGKI 93

Query: 116 YKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYG 175
           +    +         + + EK +A K    ++  +         L   ++ A E I +  
Sbjct: 94  FHYRESW------KFLSVKEKAKALKLLAEIRMNK---------LPKEEIPADEWIKEKI 138

Query: 176 LEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELP 235
            E++ +  +  + A   +   L +        ++L  E  A  + G P      G   + 
Sbjct: 139 GENEFLLSVLESFAGWADSVSLSDLTA-----LELAKEIRAALRWGGPG-LIRGGCKAVI 192

Query: 236 QAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVC-----------D 284
               R+     G  +  K   ++  + + KV   T + E       +             
Sbjct: 193 DELERIIMENKGKILTRKEVVEINIE-EKKV--YTRDNEEYSFDVAISNVGVRETVKLIG 249

Query: 285 PSYLPDKVQKVGKVARAICIMNHPI--PDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAH 342
             Y      K          +   +  P      +  V  P   +   ++      S   
Sbjct: 250 RDYFDRDYLKQVDSIEPSEGIKFNLAVPGEPRIGNTIVFTPGLMINGFNEPSALDKSL-- 307

Query: 343 NVAPNGQYIAFVSTEAETDNPEVELKPGID 372
             A  G  +       +  N +  ++ G +
Sbjct: 308 --AREGYTLIMAHMALKNGNVKKAIEKGWE 335

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 40/293 (13%), Positives = 84/293 (28%), Gaps = 55/293 (18%)

Query: 5   YDVIVLGTGLKECILSGV-----LSVDGLKVL---HMDRNAYYGGESTSLNLTQLWKRFK 56
           YD IV+G G      SG+     L+  G KVL     +R    GG + S           
Sbjct: 2   YDAIVVGGGF-----SGLKAARDLTNAGKKVLLLEGGER---LGGRAYS----------- 42

Query: 57  GDDKPPERLGSSKEYNVDMIPKFMMANGG--LVRIL----IHTDVTKYLNFKAVDGSFVY 110
                     +     V++   ++       L   L    I T                 
Sbjct: 43  ------RESRNVPGLRVEIGGAYLHRKHHPRLAAELDRYGIPTAAASEFT-SFRHRLGPT 95

Query: 111 NKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREI 170
              + + +P ++  A++                      + +    ++ L+   +   E 
Sbjct: 96  AVDQAFPIPGSEAVAVE---------AATYTLLRDAHRIDLEKGLENQDLEDLDIPLNEY 146

Query: 171 ISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYG 230
           + K  L   +  F+       +     +  A+  ++ +  +  S+         ++   G
Sbjct: 147 VDKLDLPPVSRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLDEVFS-NG 205

Query: 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVC 283
             +L  A ++          L      ++  GD  V     +G   +   V+ 
Sbjct: 206 SADLVDAMSQE----IPEIRLQTVVTGIDQSGDV-VNVTVKDGHAFQAHSVIV 253

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 226 YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDP 285
            P  G   +  A   + +  GG     +   K+  + +GK  G+ ++        V+ + 
Sbjct: 190 IPEGGCKGIIDALETVISANGGKIHTGQEVSKILIE-NGKAAGIIADDRIHDADLVISNL 248

Query: 286 SY 287
            +
Sbjct: 249 GH 250

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 7e-06
 Identities = 49/340 (14%), Positives = 105/340 (30%), Gaps = 88/340 (25%)

Query: 3   EDYDV---IVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDD 59
             +++   I+L T  K+  ++  LS      + +D ++         +L   +   +  D
Sbjct: 260 NAFNLSCKILLTTRFKQ--VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 60  KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHT-DVTKYLNFKAVDGSFVYNKGKIYKV 118
            P E L ++    + +I          +R  + T D  K++N             K+  +
Sbjct: 318 LPREVLTTNP-RRLSII-------AESIRDGLATWDNWKHVNCD-----------KLTTI 358

Query: 119 PATDVEALKSPLMGLFEKRRARKFFIYV--------------QEYEEDDP-----KSHEG 159
             + +  L+        ++   +  ++                +  + D      K H+ 
Sbjct: 359 IESSLNVLEPAEY----RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 160 LDLNKVTAREIISKYGLEDDTIDFIGHALALH--INDSYLEEPAMDFVKRIKLYAESLAR 217
             + K      IS   +  +    + +  ALH  I D Y      D    I  Y +    
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ--- 471

Query: 218 FQGGSPYIYPLYGLG------ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS 271
                 Y Y  + +G      E P+       V+     L+       F  + K+   ++
Sbjct: 472 ------YFY-SH-IGHHLKNIEHPERMTLFRMVF-----LD-----FRFL-EQKIRHDST 512

Query: 272 EGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMNHPIPD 311
                           + + +Q++      IC  N P  +
Sbjct: 513 ---------AWNASGSILNTLQQLKFYKPYIC-DNDPKYE 542

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 40/290 (13%), Positives = 80/290 (27%), Gaps = 28/290 (9%)

Query: 2   DEDYDVIVLGTGLKECILSGV-----LSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFK 56
           D  +DVIV+G G       G+     L+V G K L ++     GG S S N+        
Sbjct: 37  DGPWDVIVIGGGY-----CGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYP---- 87

Query: 57  GDDKPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIY 116
             +     +   + +    I ++          + +     +   + V+   +       
Sbjct: 88  -YEMGGTWVHWHQSHVWREITRY---------KMHNALSPSFNFSRGVNHFQLRTNPTTS 137

Query: 117 KVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYG- 175
                + E                     V  +  D     E    ++++  E I +   
Sbjct: 138 TYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERIDQIRD 197

Query: 176 -LEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGEL 234
            L  +    +   + L    +       +F+    +   +               G    
Sbjct: 198 ELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAF 257

Query: 235 PQAFAR-LSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVC 283
            + F    +      Y+   P   V  + D        +G     K+VVC
Sbjct: 258 ARRFWEEAAGTGRLGYVFGCPVRSVVNERDA-ARVTARDGREFVAKRVVC 306

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 7/182 (3%)

Query: 105 DGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGL-DLN 163
           +G  VY      +   T      +        R   +      +   ++P +H    DL+
Sbjct: 85  EGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLD 144

Query: 164 KVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARF--QGG 221
            V+ ++ +     + +  D IG  +A  +        +      +   A S +    +  
Sbjct: 145 TVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDF 204

Query: 222 SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKV 281
                 + G+ ++    A      G    LN P   V+++  G  + +       +  +V
Sbjct: 205 ILDKRVIGGMQQVSIRMA---EALGDDVFLNAPVRTVKWNESGATV-LADGDIRVEASRV 260

Query: 282 VC 283
           + 
Sbjct: 261 IL 262

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 45/302 (14%), Positives = 84/302 (27%), Gaps = 49/302 (16%)

Query: 3   EDYDVIVLGTGLKECILSGV-----LSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKG 57
              +V V+G G+     SG+     L   G   + ++ +A  GG   +           G
Sbjct: 15  TGMNVAVVGGGI-----SGLAVAHHLRSRGTDAVLLESSARLGGAVGT-------HALAG 62

Query: 58  DDKPPERLGSSKEYNVDMIPKFMMANGGLVRILIHT---DVTKYLNFKAVDGSFVYNKGK 114
                        Y V+  P   +      R L      +        A    +VY +G+
Sbjct: 63  -------------YLVEQGPNSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYTRGR 109

Query: 115 IYKVPATDVEALKSPLMGLFEKRR-ARKFFIYVQEYEEDDP-----KSHEGLDLNKVTAR 168
           +  VPA+    L S ++ L  + R A + F        D+      + H G    +V   
Sbjct: 110 LRSVPASPPAFLASDILPLGARLRVAGELFSRRAPEGVDESLAAFGRRHLGHRATQVLLD 169

Query: 169 EIISKYGLEDDTIDFIGHAL-----ALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSP 223
            + +     D     +             + S +         + +    +    +    
Sbjct: 170 AVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGA 229

Query: 224 YIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS--EGETAKCKKV 281
                 GL  L  A A      G    +      +  +  G  + +            +V
Sbjct: 230 LSTFDGGLQVLIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQV 286

Query: 282 VC 283
           V 
Sbjct: 287 VL 288

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	445
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	100.0
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	100.0
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	100.0
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	100.0
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	100.0
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.96
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.95
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.92
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.91
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.9
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.9
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.9
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.9
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.9
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.89
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.87
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.84
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.81
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.78
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.76
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.75
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.75
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.74
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.73
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.72
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.71
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.69
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.66
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.45
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.45
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.43
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.42
3dme_A	369	Conserved exported protein; structural genomics, P	99.35
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.32
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.3
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.28
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.23
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.21
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.14
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.14
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.12
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.12
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.1
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.1
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.02
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.01
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.97
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.96
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.94
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.94
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.93
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.92
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.9
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.87
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.87
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.87
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.86
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.83
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.82
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.8
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.71
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.71
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.68
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.67
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.65
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.53
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.53
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.52
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.51
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.47
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.46
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.46
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.45
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.43
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.43
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.42
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.41
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.39
4dna_A	463	Probable glutathione reductase; structural genomic	98.39
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.39
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.38
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.38
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.37
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.37
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.37
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.37
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.35
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.35
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.34
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.33
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.33
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.32
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.32
3atr_A	453	Conserved archaeal protein; saturating double bond	98.32
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.32
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.32
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.31
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.29
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.28
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.27
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.27
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.26
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.26
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.26
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.26
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.25
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.25
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.24
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.24
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.24
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.24
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.22
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.22
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.22
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.22
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.21
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.21
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.21
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.21
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.2
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.19
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.19
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.19
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.19
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.19
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.18
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.18
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.16
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.16
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.15
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.15
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.15
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.14
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.14
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.13
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.13
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.13
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.13
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.12
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.12
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.12
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.12
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.12
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.1
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.1
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.09
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.09
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.09
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.08
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.08
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.07
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.05
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.04
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.04
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.04
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.03
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.03
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.02
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.02
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.02
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.01
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.99
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.99
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.99
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.98
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.97
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.97
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.97
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.97
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.96
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.96
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.96
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.95
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.95
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.94
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.91
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.89
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.89
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.86
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.85
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.84
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.84
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.84
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.81
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.81
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.77
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.77
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.77
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.75
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.7
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.68
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.68
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.67
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.66
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.66
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.66
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.64
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.6
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.59
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.57
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.56
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.53
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.51
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.51
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.5
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.46
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.38
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.24
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.22
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.16
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.1
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.07
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.06
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	96.08
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.98
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	95.79
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.78
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.65
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.64
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.58
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	95.55
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.53
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	95.46
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	95.44
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	95.44
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	95.4
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	95.35
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.26
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.21
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	95.16
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.15
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.12
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.1
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.08
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	94.83
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	94.78
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	94.69
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.67
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	94.65
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	94.59
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	94.56
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	94.52
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.52
1ojt_A	482	Surface protein; redox-active center, glycolysis,	94.52
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	94.49
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.48
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.45
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	94.35
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	94.31
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.29
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	94.26
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	94.25
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	94.25
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.21
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	94.19
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	94.15
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	94.15
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	94.13
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	94.12
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.05
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	94.01
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	94.01
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	93.98
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	93.92
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	93.91
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	93.91
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	93.9
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	93.88
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	93.85
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	93.81
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	93.8
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	93.8
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	93.78
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	93.74
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	93.73
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	93.73
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	93.72
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	93.67
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	93.67
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	93.65
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	93.63
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	93.59
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	93.5
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	93.49
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	93.46
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	93.43
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	93.33
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	93.33
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	93.31
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	93.3
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	93.3
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	93.3
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	93.29
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	93.28
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	93.27
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	93.25
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	93.25
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	93.17
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	93.16
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	93.13
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	93.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	92.93
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	92.92
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	92.87
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	92.85
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	92.85
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	92.83
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	92.82
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	92.75
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	92.74
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	92.71
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	92.69
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	92.68
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	92.63
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	92.51
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	92.45
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	92.41
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	92.4
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	92.37
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.29
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	92.29
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	92.29
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	92.23
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	92.2
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	92.19
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	92.18
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	92.18
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	92.1
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	92.1
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	92.07
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	92.06
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	92.04
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	91.95
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	91.91
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	91.9
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	91.9
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	91.84
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	91.84
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	91.83
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	91.77
3tl2_A	315	Malate dehydrogenase; center for structural genomi	91.74
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	91.74
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	91.74
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	91.73
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	91.71
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	91.67
3r9u_A	315	Thioredoxin reductase; structural genomics, center	91.63
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	91.63
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	91.61
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	91.58
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	91.56
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	91.53
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	91.53
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	91.48
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	91.46
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	91.46
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	91.38
4ezb_A	317	Uncharacterized conserved protein; structural geno	91.34
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	91.33
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	91.27
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	91.23
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	91.22
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	91.14
1fec_A	490	Trypanothione reductase; redox-active center, oxid	91.14
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	91.13
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	91.05
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	91.02
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	90.92
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	90.88
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	90.87
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	90.86
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	90.83
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	90.75
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	90.71
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	90.68
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	90.67
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	90.65
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	90.63
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	90.59
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	90.56
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	90.51
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	90.5
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	90.48
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	90.45
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	90.45
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	90.41
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	90.4
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	90.4
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	90.39
4dna_A	463	Probable glutathione reductase; structural genomic	90.27
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	90.25
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	90.21
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	90.13
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	90.02
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	89.96
2cul_A	232	Glucose-inhibited division protein A-related PROT	89.96
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	89.9
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	89.89
3atr_A	453	Conserved archaeal protein; saturating double bond	89.85
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	89.82
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	89.82
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	89.82
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	89.77
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	89.76
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	89.64
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	89.59
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	89.56
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	89.56
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	89.53
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	89.53
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	89.52
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	89.5
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	89.47
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	89.42
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	89.39
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	89.34
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	89.28
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	89.27
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	89.26
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	89.24
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	89.16
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	89.16
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	89.11
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	89.04
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	89.03
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	88.96
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	88.95
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	88.88
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	88.83
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	88.63
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	88.55
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	88.52
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	88.5
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	88.45
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	88.21
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	88.18
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	88.1
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	88.09
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	88.07
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	87.95
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	87.89
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	87.89
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	87.88
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	87.77
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	87.73
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	87.73
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	87.68
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	87.6
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	87.55
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	87.5
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	87.34
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	87.32
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	87.32
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	87.28
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	87.14
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	87.09
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	87.08
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	87.02
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	86.99
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	86.91
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	86.84
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	86.8
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	86.7
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	86.68
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	86.62
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	86.56
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	86.44
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	86.38
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	86.33
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	86.23
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	86.22
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	86.11
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	86.01
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	85.97
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	85.83
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	85.73
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	85.47
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	85.35
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	85.24
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	85.22
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	85.2
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	85.11
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	84.97
1lnq_A	336	MTHK channels, potassium channel related protein;	84.92
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	84.9
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	85.13
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	84.82
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	84.8
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	84.79
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	84.74
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	84.72
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	84.71
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	84.7
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	84.62
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	84.6
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	84.53
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	84.34
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	84.31
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	84.26
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	84.22

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=2.6e-87  Score=683.71  Aligned_cols=441  Identities=49%  Similarity=0.885  Sum_probs=403.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEeccccee
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFM   80 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l   80 (445)
                      |+++|||||||||++|+++|+.|+++|++|+|+||++++||++++++.++++++|..+..+|+.++.+|+|+||++|+++
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l   96 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFI   96 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBE
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEe
Confidence            67889999999999999999999999999999999999999999999999999999888888899999999999999999


Q ss_pred             ecCchhHHHhhhccccCceeeEEecceEEEe---------CCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhc
Q 036458           81 MANGGLVRILIHTDVTKYLNFKAVDGSFVYN---------KGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEE  151 (445)
Q Consensus        81 ~~~~~l~~~l~~~g~~~~l~~~~~~~~~~~~---------~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~  151 (445)
                      +++++++++|.++++.+|++|+.+++.|++.         +|+++++|+++.+.|+++++++.+|+++++|+.++.++.+
T Consensus        97 ~~~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~~lLs~~eK~~l~kFL~~l~~~~~  176 (475)
T 3p1w_A           97 LVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDA  176 (475)
T ss_dssp             ETTSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEECCCSHHHHHTCTTSCHHHHHHHHHHHHHHHHCCT
T ss_pred             ecCcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEeCCCCHHHHhhccCCCHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999875         6789999999999999999999999999999999998866


Q ss_pred             cCccccccccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCc
Q 036458          152 DDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGL  231 (445)
Q Consensus       152 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~  231 (445)
                      ..+.+++.+++...|+.+|++++++++.+++++.+++++...+++.+.|+.+++.++++|+.|+++| |+++++||+||+
T Consensus       177 ~~~~~~~~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~~~~~~~~a~~~l~ri~~y~~Sl~~y-g~s~~~yp~gG~  255 (475)
T 3p1w_A          177 NKRNTWDNLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAF-GKSPFIYPLYGL  255 (475)
T ss_dssp             TCGGGSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHH-SSCSEEEETTCT
T ss_pred             ccchhhhcccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcCCCcccCCHHHHHHHHHHHHHHHhhc-CCCceEEECCCH
Confidence            5566666666677999999999999999999999999988766676778999999999999999999 999999999999


Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCC---CccccccceEEEEEEeecc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYL---PDKVQKVGKVARAICIMNH  307 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~---p~~~~~~~~~~r~i~i~~~  307 (445)
                      ++|+++|++.++++||+|+++++|++|..+++|++++|++ +|++++||+||++++++   |...++.+++.|++||+++
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~~~~p~~~~~~~~v~R~i~I~~~  335 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMHLKNKIKKIGQVIRCICILSN  335 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGCTTSTTSEEEEEEEEEEEEEESS
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCccccCcccccccceEEEEEEEEec
Confidence            9999999999999999999999999999855788899986 67889999999999999   8776666799999999999


Q ss_pred             CCCCCCCCCceEEEeCCCcCCCCCCEEEEEecCCccccCCCcEEEEEEeeeCCCCcccccHhHHhhcCCcccceeeeeec
Q 036458          308 PIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDR  387 (445)
Q Consensus       308 ~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~s~~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~  387 (445)
                      |++++++..+++++||+.+++++++||++++|+++++||+|+|++|++|.+++++|+++|++++++|+||.|+|+.++++
T Consensus       336 pi~~~~~~~~~~i~~P~~~~~~~~~iy~~~~s~~~~~cp~G~~i~~~st~~e~~~~~~~l~~~l~~l~~~~~~~~~~~~~  415 (475)
T 3p1w_A          336 PIPETNQTNSCQIIIPQNQLNRKSDIYINLVSFQHGVTLKGKYIAIVSATVETNNPIKEIEKPLELLGTIEEKFVKISDL  415 (475)
T ss_dssp             CCTTSTTCSSEEEEECGGGGTSSSCEEEEEEEGGGTSSCTTCEEEEEEEECCSSCHHHHTHHHHHTTCSEEEEEEEEEEE
T ss_pred             cCcccCCCceEEEEeCCcccCCCCCEEEEEECCCcCcCCCCcEEEEEEeecCCCCHHHHHHHHHHHhcchhheeccchhe
Confidence            99988878899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCcEEEccCCCCCCccHhHHHHHHHHHHHhcCCCcccccCchhhhhh
Q 036458          388 FVPTNNHEADHCFISTSYDATTHFESTVQDVLEMYTKITGKAVDLSVDLSAASAT  442 (445)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (445)
                      |+|.+++.++|||||+|||+++|||++++||++||+||||+++||++.++.++++
T Consensus       416 ~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  470 (475)
T 3p1w_A          416 YVSTSKKPADNIFVTSSYDATSHFETATNDLLQIWENLWGQKLNFDDLNTNADGE  470 (475)
T ss_dssp             EEESCSSCTTCEEECCCCCSCSBSHHHHHHHHHHHHHHHSSCCCC----------
T ss_pred             eeecccCCCCCEEEeCCCCCccchHHHHHHHHHHHHHHhCCcceecCCCcccccc
Confidence            9999999999999999999999999999999999999999999999877766654

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=100.00  E-value=3.3e-70  Score=572.05  Aligned_cols=431  Identities=24%  Similarity=0.472  Sum_probs=368.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCC---------------------
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDD---------------------   59 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~---------------------   59 (445)
                      |+++|||+|||||+.|+++|++|++.|++|+|+|||++|||.+++++++++++|+....                     
T Consensus         5 ~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l~~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (650)
T 1vg0_A            5 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEE   84 (650)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEE
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccHHHHHHHHHHhhccccccccccchhhhhhcchh
Confidence            56789999999999999999999999999999999999999999999999988642100                     


Q ss_pred             -------------------------------------------C------------------------------------
Q 036458           60 -------------------------------------------K------------------------------------   60 (445)
Q Consensus        60 -------------------------------------------~------------------------------------   60 (445)
                                                                 .                                    
T Consensus        85 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (650)
T 1vg0_A           85 AIPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCP  164 (650)
T ss_dssp             EEEBCSSCCCEEEEEEEECSCC----------------------------------------------------------
T ss_pred             hccccccccccccceeEeecccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                       0                                    


Q ss_pred             -----------------------------------------CCCc--------cCCCCCeEEecccceeecCchhHHHhh
Q 036458           61 -----------------------------------------PPER--------LGSSKEYNVDMIPKFMMANGGLVRILI   91 (445)
Q Consensus        61 -----------------------------------------~~~~--------~~~~~~~~iDlgp~~l~~~~~l~~~l~   91 (445)
                                                               +|+.        ++.+|+|+||++|++|++++.++++|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~R~f~~DL~PklL~~~g~lv~LL~  244 (650)
T 1vg0_A          165 GPESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLI  244 (650)
T ss_dssp             ----------------------------------------------CCCHHHHHHTGGGCCEESSCCCEESSSHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccCCCeEEeeCCeeeeCCcHHHHHHH
Confidence                                                     0100        236799999999999999999999999


Q ss_pred             hccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCccccccccCCCCCHHHHH
Q 036458           92 HTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREII  171 (445)
Q Consensus        92 ~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  171 (445)
                      ++|+.+|++|+.++..|++.+|+++++|+++.++|+++++++++|+++++|+.++.++.. .|..++.  +...|+.+|+
T Consensus       245 ~sgV~~yLEFk~v~~~y~~~~G~~~~VPas~~eif~s~~Lsl~EKr~L~kFl~~~~~~~~-~p~~~~~--~d~~S~~d~L  321 (650)
T 1vg0_A          245 KSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEE-HPDEYRA--YEGTTFSEYL  321 (650)
T ss_dssp             HHTGGGGCCEEECCEEEEESSSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGG-CHHHHHT--TTTSBHHHHH
T ss_pred             HcCCcceeeEEEccceEEecCCCEeECCCCHHHHHhCcCCCHHHHHHHHHHHHHHHHhcc-ChHHHhh--hccCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999988754 3433332  3578999999


Q ss_pred             HHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHHHHHHHHHHcCcEEEe
Q 036458          172 SKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML  251 (445)
Q Consensus       172 ~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l  251 (445)
                      +++++++.+++++.+.+++...+   ..|+..++.++.+|+.++++| |+++++||+||+++|+++|+|.++++||+|++
T Consensus       322 ~~~~ls~~L~~~L~~~lal~~~~---~~pa~~~l~~i~~~l~sl~~y-g~sg~~yp~GG~g~L~qaL~r~~~~~Gg~i~l  397 (650)
T 1vg0_A          322 KTQKLTPNLQYFVLHSIAMTSET---TSCTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCL  397 (650)
T ss_dssp             TTSSSCHHHHHHHHHHTTC--CC---SCBHHHHHHHHHHHHHHTTSS-SSSSEEEETTCTTHHHHHHHHHHHHTTCEEES
T ss_pred             HHhCCCHHHHHHHHHHHhccCCC---CCchhHHHHHHHHHHHHHHhh-ccCceEEeCCchhHHHHHHHHHHHHcCCEEEe
Confidence            99999999999998877776432   247888888889999999999 88899999999999999999999999999999


Q ss_pred             CCcceeEEEcCC-CcEEEEE-eCCeEEEcCEEEECCCCCCccccc---cceEEEEEEeeccCCCCCCCC-CceEEEeCCC
Q 036458          252 NKPECKVEFDGD-GKVIGVT-SEGETAKCKKVVCDPSYLPDKVQK---VGKVARAICIMNHPIPDTNDS-HSCQVILPQK  325 (445)
Q Consensus       252 ~~~V~~I~~~~~-g~~~~v~-~~g~~~~ad~VI~~~~~~p~~~~~---~~~~~r~i~i~~~~i~~~~~~-~~~~i~~p~~  325 (445)
                      +++|++|..+++ |++++|+ .+|++++||+||++++++|...+.   .+++.|++|++++|++++... ...++++|+.
T Consensus       398 ~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~~~~~~~~~~~v~R~i~i~~~pi~~~~~~~~~~~iiiP~~  477 (650)
T 1vg0_A          398 RHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRAVLITDGSVLRTDADQQVSILTVPAE  477 (650)
T ss_dssp             SCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCTTTTTTCCCEEEEEEEEEESSCSSCCSCCCCCEEEEECCS
T ss_pred             CCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCHhHhccccccceEEEEEEecCCCCCcCCCcceEEEEccCc
Confidence            999999998532 8899988 469999999999999888865432   468999999999998865432 5677788987


Q ss_pred             cCCCCCCEEEEEecCCccccCCCcEEEEEEeeeCCCCcccccHhHHhhc-CCccc----------------ceeeeeecc
Q 036458          326 QLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLL-GPVDE----------------IFFDTYDRF  388 (445)
Q Consensus       326 ~~~~~~~i~v~~~s~~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~~l-~~~~~----------------~~~~~~~~~  388 (445)
                      + +++++||++++|+++++||+|+|++|++|. ++.+++++|++++++| +++.+                .|+++.+.+
T Consensus       478 ~-g~~~~V~i~~~Ss~~~~cP~G~~Vv~lst~-~~~~~~~eLe~~l~~L~~~~~~~~~~~~~~~~~~vLws~~~~~~~~~  555 (650)
T 1vg0_A          478 E-PGSFAVRVIELCSSTMTCMKGTYLVHLTCM-SSKTAREDLERVVQKLFTPYTEIEAENEQVEKPRLLWALYFNMRDSS  555 (650)
T ss_dssp             S-TTSCCEEEEEECGGGTSSCTTCEEEEEEEE-CSSCHHHHHHHHHHHHCBSCSCCC-------CCBEEEEEEEEEEECT
T ss_pred             c-CCCCCEEEEEeCCCCCCCCCCCEEEEEEee-cCCCHHHHHHHHHHHHhccccccccccccccCCceEEEEEEEeeccc
Confidence            7 578899999999999999999999999987 5789999999999954 66533                377777777


Q ss_pred             ---ccCCCCCCCcEEEccCCCCCCccHhHHHHHHHHHHHhcCCCcccccCchhhh
Q 036458          389 ---VPTNNHEADHCFISTSYDATTHFESTVQDVLEMYTKITGKAVDLSVDLSAAS  440 (445)
Q Consensus       389 ---~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (445)
                         +|..++.++|||+|++||+++|||++|++|++||++|+|.+-+|...++.++
T Consensus       556 ~~~~~~~~~~~~ni~~~~~~d~~~~fe~~v~~~~~i~~~i~~~e~F~p~~p~~e~  610 (650)
T 1vg0_A          556 DISRDCYNDLPSNVYVCSGPDSGLGNDNAVKQAETLFQQICPNEDFCPAPPNPED  610 (650)
T ss_dssp             TCCGGGSSSCCTTEEEECCCCSSSSSHHHHHHHHHHHHHHSTTCCSSCCCC----
T ss_pred             ccccccccCCCCCEEEeCCCCCccCHHHHHHHHHHHHHHHcCCCCCCCCCcCccc
Confidence               6776788899999999999999999999999999999999999987775443

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=100.00  E-value=1.2e-67  Score=542.45  Aligned_cols=438  Identities=53%  Similarity=0.951  Sum_probs=378.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCC----CCCCccCCCCCeEEecc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDD----KPPERLGSSKEYNVDMI   76 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~----~~~~~~~~~~~~~iDlg   76 (445)
                      |++++||||||||++||+||++|+++|++|+|+||++++||+++|++.++.+.+|..+.    .++..++.++.|.+|++
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l~   87 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLI   87 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESS
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccceeeccc
Confidence            55789999999999999999999999999999999999999999999887555554321    01112445578999999


Q ss_pred             cceeecCchhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCccc
Q 036458           77 PKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKS  156 (445)
Q Consensus        77 p~~l~~~~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~  156 (445)
                      |+++++++.+.++|.++|+.+|++|..++..|++.+|+.+++|.++.+.+.+.++++++|+.+++|+..+.++....|..
T Consensus        88 P~~l~~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~  167 (453)
T 2bcg_G           88 PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLST  167 (453)
T ss_dssp             CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEETTEEEECCSSHHHHHHCTTSCHHHHHHHHHHHHHHHHCBTTBGGG
T ss_pred             cceeecCcHHHHHHHhcCCccceEEEEccceeEEeCCeEEECCCChHHHHhhhccchhhHHHHHHHHHHHHHhccCCchh
Confidence            99999999999999999999999999999888888999999999988899999999999999999999988765433433


Q ss_pred             cccccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHH
Q 036458          157 HEGLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQ  236 (445)
Q Consensus       157 ~~~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q  236 (445)
                      ++.++....|+.+|++++++++.+++++.+.+.+...+.|...|+...+.++..|+.+++.| +.++|.||+||+++|++
T Consensus       168 ~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~~~~p~~~~~~~~~~~~~s~~~~-~~~~~~~p~gG~~~l~~  246 (453)
T 2bcg_G          168 HQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ  246 (453)
T ss_dssp             STTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHH-SSCSEEEETTCTTHHHH
T ss_pred             hhccccccCCHHHHHHHhCCCHHHHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHhh-cCCceEeeCCCHHHHHH
Confidence            33223456899999999999999999887777766555566668888888888888888888 77888899999999999


Q ss_pred             HHHHHHHHcCcEEEeCCcceeEEEcC-CCcEEEEEeCCeEEEcCEEEECCCCCCccccccc-eEEEEEEeeccCCCCCCC
Q 036458          237 AFARLSAVYGGTYMLNKPECKVEFDG-DGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVG-KVARAICIMNHPIPDTND  314 (445)
Q Consensus       237 ~l~r~~~~~Gg~i~l~~~V~~I~~~~-~g~~~~v~~~g~~~~ad~VI~~~~~~p~~~~~~~-~~~r~i~i~~~~i~~~~~  314 (445)
                      +|++.++..|++|+++++|++|..+. ++++++|+++|+++.||.||+++++++.+.++.. ...++++++++++++++.
T Consensus       247 al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~~g~~~~ad~VV~a~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~  326 (453)
T 2bcg_G          247 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKSTGQRVIRAICILNHPVPNTSN  326 (453)
T ss_dssp             HHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEECGGGCGGGEEEEEEEEEEEEEEESSCCTTSTT
T ss_pred             HHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEECCeEEECCEEEECCCccchhhcccCCcceeEEEEEccccCCCCC
Confidence            99999999999999999999999842 6778888888999999999999998877655555 678899999999986655


Q ss_pred             CCceEEEeCCCcCCCCCCEEEEEecCCccccCCCcEEEEEEeeeCCCCcccccHhHHhhcCCcccceeeeeeccccCCCC
Q 036458          315 SHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNH  394 (445)
Q Consensus       315 ~~~~~i~~p~~~~~~~~~i~v~~~s~~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  394 (445)
                      ..++++++|..++++++++|++++|..+++||+|+++++++++++..+++++|++++++|+++++.|+++.++|+|++++
T Consensus       327 ~~~~~ii~~~~~~~~~~~~~v~~~s~~d~~aP~G~~~~~v~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  406 (453)
T 2bcg_G          327 ADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAIISTIIETDKPHIELEPAFKLLGPIEEKFMGIAELFEPREDG  406 (453)
T ss_dssp             CSSEEEEECGGGTTCSSCEEEEEEEGGGTSSCTTCEEEEEEEECCSSCHHHHTHHHHGGGCSCSEEEEEEEEEEEESSCS
T ss_pred             CccEEEEeCccccCCCCCEEEEEeCCCCCCCCCCcEEEEEEEecCCCCHHHHHHHHHHHhhhHHHhhccchheeeecCCC
Confidence            56888999987777889999999886558999999999999999999999999999999999999999999999999888


Q ss_pred             CCCcEEEccCCCCCCccHhHHHHHHHHHHHhcCCCcccccCchhh
Q 036458          395 EADHCFISTSYDATTHFESTVQDVLEMYTKITGKAVDLSVDLSAA  439 (445)
Q Consensus       395 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (445)
                      ..+|||+|++||+++|||+|+++++++|++|+|+++||++.+..+
T Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  451 (453)
T 2bcg_G          407 SKDNIYLSRSYDASSHFESMTDDVKDIYFRVTGHPLVLKQRQEQE  451 (453)
T ss_dssp             TTTSEEECCCCCSCSBSHHHHHHHHHHHHHHHSSCCCCCCCC---
T ss_pred             CCCCEEECCCCCccccHHHHHHHHHHHHHHHHCCccccccCcccc
Confidence            889999999999999999999999999999999999999776554

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=100.00  E-value=1.4e-66  Score=531.41  Aligned_cols=430  Identities=58%  Similarity=1.062  Sum_probs=376.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccc-hhhhhhhhcCCCCCCCccCCCCCeEEecccce
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN-LTQLWKRFKGDDKPPERLGSSKEYNVDMIPKF   79 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~   79 (445)
                      |++++||+|||||++||++|++|+++|++|+|+|+++++||+++|++ +.+.++++.++..++..++.+++|.+|+||++
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~   82 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKF   82 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCB
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcce
Confidence            78899999999999999999999999999999999999999999999 55444445443345556667789999999999


Q ss_pred             eecCchhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccccc
Q 036458           80 MMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEG  159 (445)
Q Consensus        80 l~~~~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~  159 (445)
                      +++++.+.+++.++|+.++++|..+++.|++.+|+.+++|.+..+.+.+.++++++++.+++|+..+.++....|..++.
T Consensus        83 l~~~~~l~~ll~~lgl~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  162 (433)
T 1d5t_A           83 LMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEG  162 (433)
T ss_dssp             EETTSHHHHHHHHHTGGGGCCEEECCEEEEEETTEEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHHCCTTCGGGGTT
T ss_pred             eeccchHHHHHHHcCCccceEEEEeCceEEeeCCEEEECCCCHHHHhhCcccChhhHHHHHHHHHHHHhhcccCchhccc
Confidence            99988999999999999999999998888888999999999976889999999999999999999988875444433333


Q ss_pred             ccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHHHHH
Q 036458          160 LDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA  239 (445)
Q Consensus       160 ~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q~l~  239 (445)
                      .+....|+.+|++++++++.+++++.+.++++...++.+.|+..++.++..|..+++.| |.++++||+||+++|+++|+
T Consensus       163 ~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~-g~~~~~~p~gG~~~l~~~l~  241 (433)
T 1d5t_A          163 VDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA  241 (433)
T ss_dssp             CCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBSHHHHHHHHHHHHSCCSS-SCCSEEEETTCTTHHHHHHH
T ss_pred             cccccCCHHHHHHHcCCCHHHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHhc-CCCcEEEeCcCHHHHHHHHH
Confidence            34456899999999999999999887776666555555668888888888888877778 77889999999999999999


Q ss_pred             HHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCccccccceEEEEEEeeccCCCCCCCCCceE
Q 036458          240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMNHPIPDTNDSHSCQ  319 (445)
Q Consensus       240 r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~~~~~~~~~~r~i~i~~~~i~~~~~~~~~~  319 (445)
                      +.++..|++|+++++|++|..+ ++++++|.++|++++||+||+++++++...++..+..+++++++++++.++...+++
T Consensus       242 ~~~~~~G~~i~~~~~V~~I~~~-~~~v~~v~~~g~~~~ad~VV~a~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~  320 (433)
T 1d5t_A          242 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQ  320 (433)
T ss_dssp             HHHHHHTCCCBCSCCCCEEEEE-TTEEEEEEETTEEEECSEEEECGGGCGGGEEEEEEEEEEEEEESSCCTTSTTCSSEE
T ss_pred             HHHHHcCCEEECCCEEEEEEEe-CCEEEEEEECCeEEECCEEEECCCCCcccccccCcceeEEEEEcCcccccCCCceEE
Confidence            9999999999999999999984 778888888999999999999998887655444567778899999988665556889


Q ss_pred             EEeCCCcCCCCCCEEEEEecCCccccCCCcEEEEEEeeeCCCCcccccHhHHhhcCCcccceeeeeeccccCCCCCCCcE
Q 036458          320 VILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRFVPTNNHEADHC  399 (445)
Q Consensus       320 i~~p~~~~~~~~~i~v~~~s~~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  399 (445)
                      +++|..++++++++|++++|.|+++||+|+++++++++++..+++++|++++++|+|+++.|+++.+.|+|++++..+||
T Consensus       321 i~~~~~~~~~~~~~~v~~~s~d~~~aP~G~~~~~~~~~~p~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  400 (433)
T 1d5t_A          321 IIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALGLLEPIDQKFVAISDLYEPIDDGSESQV  400 (433)
T ss_dssp             EEECGGGTTCSSCEEEEEEEGGGTSSCTTCEEEEEEEECCSSCHHHHTHHHHTTTCSCSEEEEEEEEEEEESCCSTTTCE
T ss_pred             EEeCccccCCCCCEEEEEECCCCcccCCCCEEEEEEEecCCCCHHHHHHHHHHHhhhHHhheeccceeeeecCCCCCCCE
Confidence            99998888788999999988889999999999999999999999999999999999999999999999999988888999


Q ss_pred             EEccCCCCCCccHhHHHHHHHHHHHhcCCCccc
Q 036458          400 FISTSYDATTHFESTVQDVLEMYTKITGKAVDL  432 (445)
Q Consensus       400 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (445)
                      |+|+|||+++|||+|+++++++|+||+|+++||
T Consensus       401 ~~~~~~d~~~~~e~~~~~~~~~~~~~~~~~~~~  433 (433)
T 1d5t_A          401 FCSCSYDATTHFETTCNDIKDIYKRMAGSAFDF  433 (433)
T ss_dssp             EECCCCCSCSBSHHHHHHHHHHHHHHHSSCCCC
T ss_pred             EECCCCCccccHHHHHHHHHHHHHHHhCCcCCC
Confidence            999999999999999999999999999999997

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=100.00  E-value=1.9e-31  Score=276.42  Aligned_cols=320  Identities=16%  Similarity=0.226  Sum_probs=196.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMANG   84 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~~   84 (445)
                      .+|||||||++||+||++|+++|++|+||||++++||+++|++.                    .||.||.||+++..+.
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~--------------------~G~~~D~G~~~~~~~~   61 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYED--------------------QGFTFDAGPTVITDPS   61 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEE--------------------TTEEEECSCCCBSCTH
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEe--------------------CCEEEecCceeecCch
Confidence            47999999999999999999999999999999999999999987                    5699999999987765


Q ss_pred             hhHHHhhhcc--ccCceeeEEecceE--EEeCCeEEEccCChHHHhhccccCc--hhHHHHHHHHHHHHhhhccCccccc
Q 036458           85 GLVRILIHTD--VTKYLNFKAVDGSF--VYNKGKIYKVPATDVEALKSPLMGL--FEKRRARKFFIYVQEYEEDDPKSHE  158 (445)
Q Consensus        85 ~l~~~l~~~g--~~~~l~~~~~~~~~--~~~~g~~~~vp~~~~~~~~~~l~~~--~~k~~~~~f~~~~~~~~~~~~~~~~  158 (445)
                      .+-+++...|  +.+++++.++++.|  .+.+|+...++.+ .+.+...+..+  .+...+.+|+..+............
T Consensus        62 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  140 (501)
T 4dgk_A           62 AIEELFALAGKQLKEYVELLPVTPFYRLCWESGKVFNYDND-QTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKLG  140 (501)
T ss_dssp             HHHHHHHTTTCCGGGTCCEEEESSSEEEEETTSCEEEECSC-HHHHHHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC--C
T ss_pred             hHHHHHHHhcchhhhceeeEecCcceEEEcCCCCEEEeecc-HHHHHHHHhhcCccccchhhhHHHHHHHhhhhhhhhcc
Confidence            4445555544  56788998888776  4568888888888 45554443332  3455677777766543211100000


Q ss_pred             ccc-------------CCC----CCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCC
Q 036458          159 GLD-------------LNK----VTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGG  221 (445)
Q Consensus       159 ~~~-------------~~~----~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~  221 (445)
                      ...             +..    .++.+++.++--++.++.++.....+..... ...++...+.   .++    .  ..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~~p-~~~~~~~~~~---~~~----~--~~  210 (501)
T 4dgk_A          141 TVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHSLLVGGNP-FATSSIYTLI---HAL----E--RE  210 (501)
T ss_dssp             CCCCCCHHHHHHSGGGTTTSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSCC---CCCTHHHH---HHH----H--SC
T ss_pred             ccccchhhhhhhhhhhhhhhhhcccHHHHHHHHhccHHHHhhhhhhhcccCCCc-chhhhhhhhh---hhh----h--cc
Confidence            000             000    1334444444445555544321111111111 1112211110   011    1  22


Q ss_pred             CceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCC-------Cccc-
Q 036458          222 SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYL-------PDKV-  292 (445)
Q Consensus       222 s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~-------p~~~-  292 (445)
                      ...+||+||++.|+++|++.++.+||+|++|++|++|.. +++++++|++ +|+++.||.||+++++.       +... 
T Consensus       211 ~G~~~p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~-~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~~~  289 (501)
T 4dgk_A          211 WGVWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMET-TGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPA  289 (501)
T ss_dssp             CCEEEETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSCEEECCC--------------
T ss_pred             CCeEEeCCCCcchHHHHHHHHHHhCCceeeecceeEEEe-eCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhcccccc
Confidence            235799999999999999999999999999999999999 4888999885 88999999999987643       1110 


Q ss_pred             -----cccc--eEEEEE----EeeccCCCCCCCCCceEEEeCC------------CcCCCCCCEEEEEec-CCccccCCC
Q 036458          293 -----QKVG--KVARAI----CIMNHPIPDTNDSHSCQVILPQ------------KQLGRKSDMYLFCCS-YAHNVAPNG  348 (445)
Q Consensus       293 -----~~~~--~~~r~i----~i~~~~i~~~~~~~~~~i~~p~------------~~~~~~~~i~v~~~s-~~~~~aP~G  348 (445)
                           +...  +...+.    +.++.+.+.   ..++++++.+            ..+++++.+|++.+| .|+..+|+|
T Consensus       290 ~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~---l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G  366 (501)
T 4dgk_A          290 AVKQSNKLQTKRMSNSLFVLYFGLNHHHDQ---LAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEG  366 (501)
T ss_dssp             -------------CCEEEEEEEEESSCCTT---SCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTT
T ss_pred             chhhhhhhhccccCCceeEEEecccCCccc---cccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCC
Confidence                 0010  111122    234554432   2344444432            123345678888876 689999999


Q ss_pred             cEEEEEEeeeC
Q 036458          349 QYIAFVSTEAE  359 (445)
Q Consensus       349 ~~~~~vst~~~  359 (445)
                      +.++++.++++
T Consensus       367 ~~~~~~~~~~p  377 (501)
T 4dgk_A          367 CGSYYVLAPVP  377 (501)
T ss_dssp             CEEEEEEEEEC
T ss_pred             CceEEEEEecC
Confidence            99999888775

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.96  E-value=2.9e-26  Score=232.47  Aligned_cols=364  Identities=15%  Similarity=0.176  Sum_probs=231.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec--
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA--   82 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~--   82 (445)
                      .||||||||++||+||+.|+++|++|+|+||++++||++++++.                    .+|.+|.||++++.  
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~--------------------~g~~~d~G~~~~~~~~   60 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPY--------------------KGFQLSTGALHMIPHG   60 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEE--------------------TTEEEESSSCSEETTT
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEecc--------------------CCEEEecCCeEEEccC
Confidence            38999999999999999999999999999999999999999987                    46999999987764  


Q ss_pred             -CchhHHHhhhccccCceeeEEecce-EEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCccccccc
Q 036458           83 -NGGLVRILIHTDVTKYLNFKAVDGS-FVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGL  160 (445)
Q Consensus        83 -~~~l~~~l~~~g~~~~l~~~~~~~~-~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~~  160 (445)
                       ...+.+++.++|+.  .++...++. .++.+|+.+.+|.. .     ..++..++..+.+++..+...         ..
T Consensus        61 ~~~~~~~l~~~lg~~--~~~~~~~~~~~~~~~g~~~~~~~~-~-----~~l~~~~~~~~~~~~~~~~~~---------~~  123 (421)
T 3nrn_A           61 EDGPLAHLLRILGAK--VEIVNSNPKGKILWEGKIFHYRES-W-----KFLSVKEKAKALKLLAEIRMN---------KL  123 (421)
T ss_dssp             TSSHHHHHHHHHTCC--CCEEECSSSCEEEETTEEEEGGGG-G-----GGCC--------CCHHHHHTT---------CC
T ss_pred             CChHHHHHHHHhCCc--ceEEECCCCeEEEECCEEEEcCCc-h-----hhCCHhHHHHHHHHHHHHHhc---------cC
Confidence             33666777777774  344444432 34558888888754 1     234445554444444333210         11


Q ss_pred             cCCCCCHHHHHHHcCCChh-HHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHHHHH
Q 036458          161 DLNKVTAREIISKYGLEDD-TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA  239 (445)
Q Consensus       161 ~~~~~s~~~~~~~~~l~~~-~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q~l~  239 (445)
                      .....++.+|+++++++.. +..++..........+..+.++...+..+..+.    .+ ++  .++|++|+++|+++|+
T Consensus       124 ~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~g--~~~~~gG~~~l~~~l~  196 (421)
T 3nrn_A          124 PKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAAL----RW-GG--PGLIRGGCKAVIDELE  196 (421)
T ss_dssp             CCCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHH----HH-CS--CEEETTCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHh----hc-CC--cceecCCHHHHHHHHH
Confidence            1234789999988755544 444443332221111222346666666554432    22 22  3689999999999999


Q ss_pred             HHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC------C-----ccc----ccc--ceEEEEE
Q 036458          240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL------P-----DKV----QKV--GKVARAI  302 (445)
Q Consensus       240 r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~------p-----~~~----~~~--~~~~r~i  302 (445)
                      +.++..|++|+++++|++|.. +++++  |+++|+++.||.||++.+..      +     ...    +..  .......
T Consensus       197 ~~~~~~G~~i~~~~~V~~i~~-~~~~v--V~~~g~~~~ad~Vv~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~  273 (421)
T 3nrn_A          197 RIIMENKGKILTRKEVVEINI-EEKKV--YTRDNEEYSFDVAISNVGVRETVKLIGRDYFDRDYLKQVDSIEPSEGIKFN  273 (421)
T ss_dssp             HHHHTTTCEEESSCCEEEEET-TTTEE--EETTCCEEECSEEEECSCHHHHHHHHCGGGSCHHHHHHHHTCCCCCEEEEE
T ss_pred             HHHHHCCCEEEcCCeEEEEEE-ECCEE--EEeCCcEEEeCEEEECCCHHHHHHhcCcccCCHHHHHHHhCCCCCceEEEE
Confidence            999999999999999999987 46665  67788899999999987642      1     110    011  1222223


Q ss_pred             EeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEEEec-CCccccCCCcEEEEEEeeeCCCCcccccHhHHhhcCCcc---
Q 036458          303 CIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCS-YAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVD---  378 (445)
Q Consensus       303 ~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~s-~~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~~l~~~~---  378 (445)
                      +.++++..     .+..+++++..-  -  -.+..+| .++.++|+|+.++++++.++..+++++++.+++.|..+.   
T Consensus       274 l~~~~~~~-----~~~~~~~~~~~~--~--~~i~~~s~~~p~~ap~G~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~  344 (421)
T 3nrn_A          274 LAVPGEPR-----IGNTIVFTPGLM--I--NGFNEPSALDKSLAREGYTLIMAHMALKNGNVKKAIEKGWEELLEIFPEG  344 (421)
T ss_dssp             EEEESSCS-----SCSSEEECTTSS--S--CEEECGGGTCGGGSCTTEEEEEEEEECTTCCHHHHHHHHHHHHHHHCTTC
T ss_pred             EEEcCCcc-----cCCeEEEcCCcc--e--eeEeccCCCCCCcCCCCceEEEEEEeeccccHHHHHHHHHHHHHHHcCCC
Confidence            34455421     133445554321  1  1234444 688999999999999998877666666777777554221   


Q ss_pred             c-ceee-eee---ccccC-----CCCCCCcEEEccCCCCCC-cc--HhHHHHHHHHHHHh
Q 036458          379 E-IFFD-TYD---RFVPT-----NNHEADHCFISTSYDATT-HF--ESTVQDVLEMYTKI  425 (445)
Q Consensus       379 ~-~~~~-~~~---~~~~~-----~~~~~~~~~~~~~~d~~~-~~--~~~~~~~~~~~~~~  425 (445)
                      + ..+. +.+   .|.+.     .... +|+|++..+-... .+  |.|+..++..-++|
T Consensus       345 ~~~~~~~~~~~~p~~~~~~~~~~~~~~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l  403 (421)
T 3nrn_A          345 EPLLAQVYRDGNPVNRTRAGLHIEWPL-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL  403 (421)
T ss_dssp             EEEEEEEC-------------CCCCCC-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred             eEEEeeeccCCCCcccccCCCCCCCCC-CcEEEECCcccCCCceeeehHHHHHHHHHHHh
Confidence            1 1111 111   11110     1123 8999998766666 56  99999999998888

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.95  E-value=6e-26  Score=230.03  Aligned_cols=368  Identities=16%  Similarity=0.183  Sum_probs=225.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec--
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA--   82 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~--   82 (445)
                      +||||||||++||+||+.|+++|++|+||||++++||+++++..                    .+|.+|.||+++..  
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~--------------------~G~~~d~G~~~~~~~~   60 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSY--------------------KGFQLSSGAFHMLPNG   60 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEE--------------------TTEEEESSSCSCBTTG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeecc--------------------CCcEEcCCCceEecCC
Confidence            58999999999999999999999999999999999999999887                    46999999977653  


Q ss_pred             -CchhHHHhhhccccCceeeEEecceEEEeC-----------CeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhh
Q 036458           83 -NGGLVRILIHTDVTKYLNFKAVDGSFVYNK-----------GKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYE  150 (445)
Q Consensus        83 -~~~l~~~l~~~g~~~~l~~~~~~~~~~~~~-----------g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~  150 (445)
                       ...+.+++.++|+...+.  ..+..+++.+           ++.+.++..      ...+++.++.++...+   ....
T Consensus        61 ~~~~~~~l~~~lg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~  129 (425)
T 3ka7_A           61 PGGPLACFLKEVEASVNIV--RSEMTTVRVPLKKGNPDYVKGFKDISFNDF------PSLLSYKDRMKIALLI---VSTR  129 (425)
T ss_dssp             GGSHHHHHHHHTTCCCCEE--ECCCCEEEEESSTTCCSSTTCEEEEEGGGG------GGGSCHHHHHHHHHHH---HHTT
T ss_pred             CccHHHHHHHHhCCCceEE--ecCCceEEeecCCCcccccccccceehhhh------hhhCCHHHHHHHHHHH---Hhhh
Confidence             235667777788754333  2222222211           444544421      1234545554443332   2111


Q ss_pred             ccCccccccccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCC
Q 036458          151 EDDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYG  230 (445)
Q Consensus       151 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG  230 (445)
                      .       . .....++.+|++++.-++.+..++..........+....++...+..+..+.    .+ |+  ..+|.+|
T Consensus       130 ~-------~-~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~----~~-~~--~~~~~gG  194 (425)
T 3ka7_A          130 K-------N-RPSGSSLQAWIKSQVSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENMY----RF-GG--TGIPEGG  194 (425)
T ss_dssp             T-------S-CCCSSBHHHHHHHHCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHH----HH-CS--CEEETTS
T ss_pred             h-------c-CCCCCCHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHH----hc-CC--ccccCCC
Confidence            0       0 1135789999987755555555443322111111112335555555444331    22 22  2589999


Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC------Ccc-----c-------
Q 036458          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL------PDK-----V-------  292 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~------p~~-----~-------  292 (445)
                      ++.|+++|++.++..|++|+++++|++|..+ ++++++|+++|++++||.||++.+.+      +..     .       
T Consensus       195 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~gv~~~g~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~  273 (425)
T 3ka7_A          195 CKGIIDALETVISANGGKIHTGQEVSKILIE-NGKAAGIIADDRIHDADLVISNLGHAATAVLCSEALSKEADAAYFKMV  273 (425)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTEEEECSEEEECSCHHHHHHHTTTTCCTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCEEEECCceeEEEEE-CCEEEEEEECCEEEECCEEEECCCHHHHHHhcCCcccccCCHHHHHHh
Confidence            9999999999999999999999999999984 77888888889999999999987642      210     0       


Q ss_pred             ccc--ceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEEEec-CCccccCCCcEEEEEEeeeCCCC---cccc
Q 036458          293 QKV--GKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCS-YAHNVAPNGQYIAFVSTEAETDN---PEVE  366 (445)
Q Consensus       293 ~~~--~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~s-~~~~~aP~G~~~~~vst~~~~~~---~~~~  366 (445)
                      +..  .......+.++++..     .+..++++...   .....+..+| .++..||+|+.++++......++   .+++
T Consensus       274 ~~~~~~~~~~v~l~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~~~~~~~~~~  345 (425)
T 3ka7_A          274 GTLQPSAGIKICLAADEPLV-----GHTGVLLTPYT---RRINGVNEVTQADPELAPPGKHLTMCHQYVAPENVKNLESE  345 (425)
T ss_dssp             HHCCCBEEEEEEEEESSCSS-----CSSSEEECCSS---SSEEEEECGGGTCGGGSCTTCEEEEEEEEECGGGGGGHHHH
T ss_pred             hCcCCCceEEEEeecCCCcc-----CcCEEEECCCh---hhcceEEeccCCCCCcCCCCCeEEEEEeccccccccchHHH
Confidence            011  122233344566543     23445565431   1122344444 68899999999998766543222   2244


Q ss_pred             cHhHHhhcC---C-ccccee---eee---eccccCC-----CCCC-CcEEEccCCCC---CCccHhHHHHHHHHHHHhcC
Q 036458          367 LKPGIDLLG---P-VDEIFF---DTY---DRFVPTN-----NHEA-DHCFISTSYDA---TTHFESTVQDVLEMYTKITG  427 (445)
Q Consensus       367 l~~~~~~l~---~-~~~~~~---~~~---~~~~~~~-----~~~~-~~~~~~~~~d~---~~~~~~~~~~~~~~~~~~~~  427 (445)
                      ++.+++-|.   | +.....   .+.   ..|.+..     ...+ +|+|++..+-.   ....+.|+-.++..-++|.|
T Consensus       346 ~~~~~~~l~~~~p~~~~~~~~v~~~~~~~P~~~~~~~~~~~~~~p~~gL~laG~~~~~~gg~gv~~~~~s~~~~~~~i~~  425 (425)
T 3ka7_A          346 IEMGLEDLKEIFPGKRYEVLLIQSYHDEWPVNRAASGTDPGNETPFSGLYVVGDGAKGKGGIEVEGVALGVMSVMEKVLG  425 (425)
T ss_dssp             HHHHHHHHHHHSTTCCEEEEEEEEEBTTBCSBSSCTTCCCCSBCSSBTEEECSTTSCCTTCCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhCCCCceEEEEEEEECCCccccccccCCCCCCCCCcCCeEEeCCccCCCCCCccHHHHHHHHHHHHHhhC
Confidence            555554332   2 111111   111   1222111     1123 79999965544   47889999999999888875

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.92  E-value=3.6e-23  Score=212.97  Aligned_cols=383  Identities=11%  Similarity=0.096  Sum_probs=224.9

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA   82 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~   82 (445)
                      ..+||+|||||++||+||+.|+++|++|+|+|+++++||+++|++.                    .++.+|+|++++..
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~--------------------~g~~~~~g~~~~~~   74 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHAL--------------------AGYLVEQGPNSFLD   74 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEE--------------------TTEEEESSCCCEET
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeecc--------------------CCeeeecChhhhhh
Confidence            4589999999999999999999999999999999999999999987                    46999999999986


Q ss_pred             C-chhHHHhhhccccCceeeEE--ecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccccc
Q 036458           83 N-GGLVRILIHTDVTKYLNFKA--VDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEG  159 (445)
Q Consensus        83 ~-~~l~~~l~~~g~~~~l~~~~--~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~  159 (445)
                      . ..+.+++.+.|+...+.+..  ....+++.+|+.+.+|.+..+.+...+.++.++.+      .+..+-.. +  .. 
T Consensus        75 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~--~~-  144 (478)
T 2ivd_A           75 REPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLR------VAGELFSR-R--AP-  144 (478)
T ss_dssp             TCHHHHHHHHHTTCGGGEECSCSSCCCEEEEETTEEEECCCSHHHHHTCSSSCHHHHHH------HHGGGGCC-C--CC-
T ss_pred             hhHHHHHHHHHcCCcceeeecCccccceEEEECCEEEECCCCHHHhccCCCCCHHHHHH------HhhhhhcC-C--CC-
Confidence            4 46677888889876554332  12356778899999998855555555554433321      22222111 0  01 


Q ss_pred             ccCCCCCHHHHHHHcCCChhHHH-HHHHHhh-ccccCCCCCCcHHHHHHHHHHHHHHhh----------h--------cc
Q 036458          160 LDLNKVTAREIISKYGLEDDTID-FIGHALA-LHINDSYLEEPAMDFVKRIKLYAESLA----------R--------FQ  219 (445)
Q Consensus       160 ~~~~~~s~~~~~~~~~l~~~~~~-~i~~~~~-l~~~~~~~~~~~~~~l~~i~~~~~s~~----------~--------~~  219 (445)
                       ..+..|+.+|+++. +.+...+ ++..... .+.. +..+.++...+.++..+....+          .        ..
T Consensus       145 -~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (478)
T 2ivd_A          145 -EGVDESLAAFGRRH-LGHRATQVLLDAVQTGIYAG-DVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAG  221 (478)
T ss_dssp             -TTCCCBHHHHHHHH-TCHHHHHHTHHHHHHHHHCC-CTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----C
T ss_pred             -CCCCCCHHHHHHHh-hCHHHHHHHHHHHhceeecC-CHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhccccccCccc
Confidence             23568999999874 4454433 3332221 2221 1112344444443332211100          0        00


Q ss_pred             CC----CceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE----eCCeEEEcCEEEECCCCC---
Q 036458          220 GG----SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT----SEGETAKCKKVVCDPSYL---  288 (445)
Q Consensus       220 g~----s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~----~~g~~~~ad~VI~~~~~~---  288 (445)
                      ..    ..+++|++|++.|+++|++.+   |++|+++++|++|..+ +++ +.|+    .+|++++||+||++.+..   
T Consensus       222 ~~~~~~~~~~~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~ad~vV~a~~~~~~~  296 (478)
T 2ivd_A          222 TAPKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLARE-DGG-WRLIIEEHGRRAELSVAQVVLAAPAHATA  296 (478)
T ss_dssp             CSCCCCCCEEEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC---C-CEEEEEETTEEEEEECSEEEECSCHHHHH
T ss_pred             ccccccccEEEECCCHHHHHHHHHHHh---hhhEEcCCEEEEEEec-CCe-EEEEEeecCCCceEEcCEEEECCCHHHHH
Confidence            12    467899999999999998765   6799999999999874 444 3454    367789999999986532   


Q ss_pred             ---Cc---cc----cc--cceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEEEec-CCccccCCCcEEEEEE
Q 036458          289 ---PD---KV----QK--VGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCS-YAHNVAPNGQYIAFVS  355 (445)
Q Consensus       289 ---p~---~~----~~--~~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~s-~~~~~aP~G~~~~~vs  355 (445)
                         |.   ..    +.  ...+.+..+.++++....  .....+++|...  ......+...+ ..+..+|+|..++.+.
T Consensus       297 ~ll~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~p~g~~~l~~~  372 (478)
T 2ivd_A          297 KLLRPLDDALAALVAGIAYAPIAVVHLGFDAGTLPA--PDGFGFLVPAEE--QRRMLGAIHASTTFPFRAEGGRVLYSCM  372 (478)
T ss_dssp             HHHTTTCHHHHHHHHTCCBCCEEEEEEEECTTSSCC--CCSSEEECCGGG--CCSCCEEEEHHHHCGGGBSTTCEEEEEE
T ss_pred             HHhhccCHHHHHHHhcCCCCcEEEEEEEEccccCCC--CCceEEEecCCC--CCceEEEEEEcccCCCcCCCCCEEEEEE
Confidence               21   10    11  234455556667664211  123445566432  11222333333 3456789998766544


Q ss_pred             eeeCC------CCcccccHhHHh----hcCCccc----ceeeeee---ccccCC--------C--CCCCcEEEccCCCCC
Q 036458          356 TEAET------DNPEVELKPGID----LLGPVDE----IFFDTYD---RFVPTN--------N--HEADHCFISTSYDAT  408 (445)
Q Consensus       356 t~~~~------~~~~~~l~~~~~----~l~~~~~----~~~~~~~---~~~~~~--------~--~~~~~~~~~~~~d~~  408 (445)
                      +..+.      .+.++..+.+++    +++...+    ....|..   .|.+-.        .  ...+|+|++..+-..
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g  452 (478)
T 2ivd_A          373 VGGARQPGLVEQDEDALAALAREELKALAGVTARPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQRLPGLHLIGNAYKG  452 (478)
T ss_dssp             EECTTCGGGGGSCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEESSCCBCCBTTHHHHHHHHHHHHHTSTTEEECSTTTSC
T ss_pred             eCCcCCccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCcccCCCcCHHHHHHHHHHHHhhCCCEEEEccCCCC
Confidence            43221      122222223333    3332111    1111211   121110        0  003699999876445


Q ss_pred             CccHhHHHHHHHHHHHhcC
Q 036458          409 THFESTVQDVLEMYTKITG  427 (445)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~  427 (445)
                      ...+.|+...+.+-++|.+
T Consensus       453 ~gv~gA~~SG~~aA~~i~~  471 (478)
T 2ivd_A          453 VGLNDCIRNAAQLADALVA  471 (478)
T ss_dssp             CSHHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            5689999999999888864

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.91  E-value=2.1e-22  Score=206.18  Aligned_cols=386  Identities=10%  Similarity=0.109  Sum_probs=214.3

Q ss_pred             CCC-cccEEEECCChhHHHHHHHhhhCC------CeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEE
Q 036458            1 MDE-DYDVIVLGTGLKECILSGVLSVDG------LKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNV   73 (445)
Q Consensus         1 m~~-~~DViIIGaGl~Gl~aA~~La~~G------~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i   73 (445)
                      |.. .+||+|||||++||+||+.|+++|      ++|+|||+++++||+++|.+.                    .++.+
T Consensus         1 M~~~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~--------------------~g~~~   60 (470)
T 3i6d_A            1 MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKK--------------------DGYII   60 (470)
T ss_dssp             ----CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECC--------------------TTCCE
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEecc--------------------CCEEe
Confidence            553 489999999999999999999999      999999999999999999887                    46899


Q ss_pred             ecccceeec-CchhHHHhhhccccCceeeEEecceEEEeCCeEEEccCCh--------HHHhhccccCchhHHHHHHHHH
Q 036458           74 DMIPKFMMA-NGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATD--------VEALKSPLMGLFEKRRARKFFI  144 (445)
Q Consensus        74 Dlgp~~l~~-~~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~--------~~~~~~~l~~~~~k~~~~~f~~  144 (445)
                      |.|++++.. ...+.+++.++|+...+........+++.+|+.+.+|.+.        ...+...+++..++.+  ....
T Consensus        61 d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~  138 (470)
T 3i6d_A           61 ERGPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKAR--AAMD  138 (470)
T ss_dssp             ESSCCCEETTCTHHHHHHHHTTCCTTEEECCCCCEEEECSSCEEECCC---------------------CCSHH--HHHH
T ss_pred             ccChhhhhhCCHHHHHHHHHcCCcceeecCCCCccEEEECCEEEECCCCcccCCcCchHHhhccCcCCHHHHHH--HhcC
Confidence            999998875 4467788888998876553323456677788888877542        1122222333322211  1111


Q ss_pred             HHHhhhccCccccccccCCCCCHHHHHHHcCCChhHHH-HHHHH-hhccccCCCCCCcHHHHHHHHHHHHHHhhhc----
Q 036458          145 YVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDTID-FIGHA-LALHINDSYLEEPAMDFVKRIKLYAESLARF----  218 (445)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~-~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~----  218 (445)
                      .+   .   +.   ....+..++.+|+++. +.....+ ++... ..++..+ ..+.++...+..+..+....+..    
T Consensus       139 ~~---~---~~---~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~  207 (470)
T 3i6d_A          139 FI---L---PA---SKTKDDQSLGEFFRRR-VGDEVVENLIEPLLSGIYAGD-IDKLSLMSTFPQFYQTEQKHRSLILGM  207 (470)
T ss_dssp             HH---S---CC---CSSSSCCBHHHHHHHH-SCHHHHHHTHHHHHHHTTCSC-TTTBBHHHHCGGGCC------------
T ss_pred             cc---c---CC---CCCCCCcCHHHHHHHh-cCHHHHHHhccchhcEEecCC-HHHhhHHHHHHHHHHHHHhcCcHHHHH
Confidence            11   1   11   0123468999999764 4444333 32222 1222211 11112222222111100000000    


Q ss_pred             --------------cCCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEEC
Q 036458          219 --------------QGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCD  284 (445)
Q Consensus       219 --------------~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~  284 (445)
                                    .....+.++++|++.|++++++.+..  ++|+++++|++|..+ ++.+...+.+|+++.||+||++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~-~~~~~v~~~~g~~~~ad~vi~a  284 (470)
T 3i6d_A          208 KKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKL--TKVYKGTKVTKLSHS-GSCYSLELDNGVTLDADSVIVT  284 (470)
T ss_dssp             -------------------EEEETTCTHHHHHHHHHTCCS--EEEECSCCEEEEEEC-SSSEEEEESSSCEEEESEEEEC
T ss_pred             HhhccccccccccccCCceEEEeCChHHHHHHHHHHhcCC--CEEEeCCceEEEEEc-CCeEEEEECCCCEEECCEEEEC
Confidence                          00236778999999999998875533  799999999999985 5554433357878999999998


Q ss_pred             CCCC------Cc-cc----cc--cceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEEEe-c-CCccccCCCc
Q 036458          285 PSYL------PD-KV----QK--VGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCC-S-YAHNVAPNGQ  349 (445)
Q Consensus       285 ~~~~------p~-~~----~~--~~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~-s-~~~~~aP~G~  349 (445)
                      .+..      +. ..    +.  ...+.+..+.++++.... ......+++|..+   ...++-... + ..+..+|.|.
T Consensus       285 ~p~~~~~~l~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~-~~~~~g~l~~~~~---~~~~~~~~~~s~~~~~~~p~~~  360 (470)
T 3i6d_A          285 APHKAAAGMLSELPAISHLKNMHSTSVANVALGFPEGSVQM-EHEGTGFVISRNS---DFAITACTWTNKKWPHAAPEGK  360 (470)
T ss_dssp             SCHHHHHHHTTTSTTHHHHHTCEEEEEEEEEEEESSTTCCC-SSCSSEEEECSTT---CCSEEEEEEHHHHCGGGSCTTC
T ss_pred             CCHHHHHHHcCCchhhHHHhcCCCCceEEEEEEECchhcCC-CCCCeEEEccCCC---CCCceEEEEEcCcCCCcCCCCC
Confidence            6532      11 00    11  123444555567665321 1234456677542   123332222 2 2356789998


Q ss_pred             EEEEEEeeeCC------CCcccccHhHHhhcCCc----cc-cee---eeee---ccccCC--------C---CCCCcEEE
Q 036458          350 YIAFVSTEAET------DNPEVELKPGIDLLGPV----DE-IFF---DTYD---RFVPTN--------N---HEADHCFI  401 (445)
Q Consensus       350 ~~~~vst~~~~------~~~~~~l~~~~~~l~~~----~~-~~~---~~~~---~~~~~~--------~---~~~~~~~~  401 (445)
                      .++.+....+.      .++++.++.+++.|..+    .+ .+.   .|..   .|.+-.        .   ....||++
T Consensus       361 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~p~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~  440 (470)
T 3i6d_A          361 TLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNINGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYM  440 (470)
T ss_dssp             EEEEEEECCSSCCGGGTSCHHHHHHHHHHHHGGGSCCCSCCSEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEE
T ss_pred             EEEEEEECCCCCccccCCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEE
Confidence            77655542221      12233334444433211    11 111   1221   122110        0   01268999


Q ss_pred             ccCCCCCCccHhHHHHHHHHHHHhc
Q 036458          402 STSYDATTHFESTVQDVLEMYTKIT  426 (445)
Q Consensus       402 ~~~~d~~~~~~~~~~~~~~~~~~~~  426 (445)
                      +...-.....+.|+...+.+-++|.
T Consensus       441 aG~~~~g~gv~~a~~sG~~aA~~i~  465 (470)
T 3i6d_A          441 TGASFEGVGIPDCIDQGKAAVSDAL  465 (470)
T ss_dssp             CSTTTSCCSHHHHHHHHHHHHHHHH
T ss_pred             EeecCCCCCHHHHHHHHHHHHHHHH
Confidence            9875556678999998888877764

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.90  E-value=2.2e-22  Score=206.85  Aligned_cols=385  Identities=12%  Similarity=0.074  Sum_probs=222.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC--eEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA   82 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~   82 (445)
                      +||+|||||++||+||++|+++|+  +|+|||+++++||+++|.+..                   .++.+|.||+++..
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~-------------------~g~~~d~G~~~~~~   63 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGP-------------------NGAIFELGPRGIRP   63 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECT-------------------TSCEEESSCCCBCC
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEecc-------------------CCeEEEeCCCcccC
Confidence            699999999999999999999999  999999999999999997752                   36999999999865


Q ss_pred             C----chhHHHhhhccccCceeeEEe-----cceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccC
Q 036458           83 N----GGLVRILIHTDVTKYLNFKAV-----DGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDD  153 (445)
Q Consensus        83 ~----~~l~~~l~~~g~~~~l~~~~~-----~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~  153 (445)
                      .    ..+.+++.++|+.+.+.....     ...|++.+|+++++|.+....+..  ...+.+....+   .+.++..  
T Consensus        64 ~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~--~~~~~~~~~~~---~~~~~~~--  136 (477)
T 3nks_A           64 AGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRP--SPPFSKPLFWA---GLRELTK--  136 (477)
T ss_dssp             CHHHHHHHHHHHHHTTCGGGEEEECTTSHHHHCEEEEETTEEEECCCSSCC---C--CTTSCSCSSHH---HHTTTTS--
T ss_pred             CCcccHHHHHHHHHcCCcceeeecCCCCchhcceEEEECCEEEECCCChhhcccc--cchhhhHHHHH---HHHhhhc--
Confidence            3    246677788888765443321     125678899999999763222211  11111111111   1122111  


Q ss_pred             ccccccccCCCCCHHHHHHHcCCChhHHH-HHHHHh-hccccCCCCCCcHHHHHHHHHHHHHHhh---------------
Q 036458          154 PKSHEGLDLNKVTAREIISKYGLEDDTID-FIGHAL-ALHINDSYLEEPAMDFVKRIKLYAESLA---------------  216 (445)
Q Consensus       154 ~~~~~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~s~~---------------  216 (445)
                      +.  .  .....++.+|+++. +.+...+ ++.... .++..+ ..+.++...+..+.......+               
T Consensus       137 ~~--~--~~~~~s~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~-~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~  210 (477)
T 3nks_A          137 PR--G--KEPDETVHSFAQRR-LGPEVASLAMDSLCRGVFAGN-SRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQ  210 (477)
T ss_dssp             CC--C--CSSCCBHHHHHHHH-HCHHHHHHTHHHHHHHHHSSC-TTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-----C
T ss_pred             CC--C--CCCCcCHHHHHHHh-hCHHHHHHHHHHHhcccccCC-HHHhhHHHHHHHHHHHHHHcCCHHHHHHHhcccccC
Confidence            11  1  12457899998763 3344333 222221 222211 112244444443322111111               


Q ss_pred             ---------hccCCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCC
Q 036458          217 ---------RFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSY  287 (445)
Q Consensus       217 ---------~~~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~  287 (445)
                               .. ...+++++++|++.|+++|++.+...|++|+++++|++|..+ +++.+.|+++++++.||+||++.+.
T Consensus       211 ~~~~~~~~~~~-~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~-~~~~~~v~~~~~~~~ad~vv~a~p~  288 (477)
T 3nks_A          211 PDSALIRQALA-ERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQ-AEGRWKVSLRDSSLEADHVISAIPA  288 (477)
T ss_dssp             CCCHHHHHHHH-TTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEC-GGGCEEEECSSCEEEESEEEECSCH
T ss_pred             Cchhhhhhhcc-cCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEc-CCceEEEEECCeEEEcCEEEECCCH
Confidence                     01 133578999999999999999999999999999999999884 4443456777778999999998653


Q ss_pred             C------Cccc-------ccc--ceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEEEec--CCcccc-CCCc
Q 036458          288 L------PDKV-------QKV--GKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCS--YAHNVA-PNGQ  349 (445)
Q Consensus       288 ~------p~~~-------~~~--~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~s--~~~~~a-P~G~  349 (445)
                      .      +...       ..+  ..+....+.++++...   ......++|..+   +..+.-....  .-+... |+|.
T Consensus       289 ~~~~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~---~~~~g~l~~~~~---~~~~~~~~~~s~~~~~~~~~~~~  362 (477)
T 3nks_A          289 SVLSELLPAEAAPLARALSAITAVSVAVVNLQYQGAHLP---VQGFGHLVPSSE---DPGVLGIVYDSVAFPEQDGSPPG  362 (477)
T ss_dssp             HHHHHHSCGGGHHHHHHHHTCCEEEEEEEEEEETTCCCS---SCSSEEECCTTT---CSSEEEEECHHHHCGGGSTTTTC
T ss_pred             HHHHHhccccCHHHHHHHhcCCCCcEEEEEEEECCCCCC---CCCceEEccCCC---CCCceEEEEeccccCCCCCCCCc
Confidence            2      2111       011  1233334445565421   123355666542   1223222222  223332 3477


Q ss_pred             EEEEEEeeeC----------CCCcccccHhHHh----hcCCcc-ccee---eeee---ccccC--------CC---CCCC
Q 036458          350 YIAFVSTEAE----------TDNPEVELKPGID----LLGPVD-EIFF---DTYD---RFVPT--------NN---HEAD  397 (445)
Q Consensus       350 ~~~~vst~~~----------~~~~~~~l~~~~~----~l~~~~-~~~~---~~~~---~~~~~--------~~---~~~~  397 (445)
                      .++.+....+          ..++++.++.+++    +|+... ..+.   .+..   .|.+-        ..   ....
T Consensus       363 ~~l~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~  442 (477)
T 3nks_A          363 LRVTVMLGGSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRL  442 (477)
T ss_dssp             EEEEEEECHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEEECCccccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCC
Confidence            7665444211          0133333444443    343211 1111   1111   12211        00   0136


Q ss_pred             cEEEccCCCCCCccHhHHHHHHHHHHHhcCCC
Q 036458          398 HCFISTSYDATTHFESTVQDVLEMYTKITGKA  429 (445)
Q Consensus       398 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  429 (445)
                      +++++..+-.+...++|+...+.+-++|.+++
T Consensus       443 ~l~l~G~~~~G~gv~~a~~sg~~aA~~il~~~  474 (477)
T 3nks_A          443 PLTLAGASYEGVAVNDCIESGRQAAVSVLGTE  474 (477)
T ss_dssp             SEEECSTTTSCCSHHHHHHHHHHHHHHHHHCC
T ss_pred             CEEEEccCCCCCcHHHHHHHHHHHHHHHHhcc
Confidence            89999887777788999999999999997653

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.90  E-value=6.2e-23  Score=212.76  Aligned_cols=246  Identities=16%  Similarity=0.142  Sum_probs=148.4

Q ss_pred             cccEEEECCChhHHHHHHHhhh-CCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec
Q 036458            4 DYDVIVLGTGLKECILSGVLSV-DGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA   82 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~-~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~   82 (445)
                      .+||||||||++||+||++|++ .|++|+|||+++++||+++|+...                   .||.+|.|||+++.
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~-------------------~G~~~D~G~h~~~~   70 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTP-------------------EGFLYDVGGHVIFS   70 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECT-------------------TSCEEESSCCCCCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEec-------------------CCEEEEeCceEecC
Confidence            5899999999999999999998 499999999999999999986431                   47999999999986


Q ss_pred             Cc-hhHHHhhhccccCceeeEEe-cceEEEeCCeEEEccCChHHHhhccccCchhH-HHHHHHHHHHHhhhccCcccccc
Q 036458           83 NG-GLVRILIHTDVTKYLNFKAV-DGSFVYNKGKIYKVPATDVEALKSPLMGLFEK-RRARKFFIYVQEYEEDDPKSHEG  159 (445)
Q Consensus        83 ~~-~l~~~l~~~g~~~~l~~~~~-~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k-~~~~~f~~~~~~~~~~~~~~~~~  159 (445)
                      .. .+.+++.+.+... .+|... ...+++.+|+.+++|.. ....   .+..... +....++.......  .+     
T Consensus        71 ~~~~v~~l~~e~~~~~-~~~~~~~~~~~i~~~g~~~~~p~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~-----  138 (513)
T 4gde_A           71 HYKYFDDCLDEALPKE-DDWYTHQRISYVRCQGQWVPYPFQ-NNIS---MLPKEEQVKCIDGMIDAALEAR--VA-----  138 (513)
T ss_dssp             CBHHHHHHHHHHSCSG-GGEEEEECCEEEEETTEEEESSGG-GGGG---GSCHHHHHHHHHHHHHHHHHHH--TC-----
T ss_pred             CCHHHHHHHHHhCCcc-ceeEEecCceEEEECCeEeecchh-hhhh---hcchhhHHHHHHHHHHHHHhhh--cc-----
Confidence            54 5566666665432 234333 34567889999988843 1111   1111111 11122222111110  01     


Q ss_pred             ccCCCCCHHHHHHHcCCChhHHHH-HHHH-hhccc----------cCCCCCCcHH-HHHHHHHHHHHHhhhccCCCceEE
Q 036458          160 LDLNKVTAREIISKYGLEDDTIDF-IGHA-LALHI----------NDSYLEEPAM-DFVKRIKLYAESLARFQGGSPYIY  226 (445)
Q Consensus       160 ~~~~~~s~~~~~~~~~l~~~~~~~-i~~~-~~l~~----------~~~~~~~~~~-~~l~~i~~~~~s~~~~~g~s~~~~  226 (445)
                       .....++.+|+.+. +.+.+.+. +... ..++.          ....+..+.. ..+...... .....+.....+.|
T Consensus       139 -~~~~~s~~~~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  215 (513)
T 4gde_A          139 -NTKPKTFDEWIVRM-MGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILG-KTAGNWGPNATFRF  215 (513)
T ss_dssp             -CSCCCSHHHHHHHH-HHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHT-CCCCSCBTTBEEEE
T ss_pred             -cccccCHHHHHHHh-hhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhc-ccccccccccceee
Confidence             11346788876532 22222221 1111 11111          0011111111 111111000 00111101334455


Q ss_pred             e-CCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 036458          227 P-LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPS  286 (445)
Q Consensus       227 p-~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~  286 (445)
                      | ++|++.|++++++.+...|+++++|++|++|..+ ++++  +..+|+++.||+||++.+
T Consensus       216 ~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~-~~~v--~~~~G~~~~ad~vI~t~P  273 (513)
T 4gde_A          216 PARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNAN-NKTV--TLQDGTTIGYKKLVSTMA  273 (513)
T ss_dssp             ESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETT-TTEE--EETTSCEEEEEEEEECSC
T ss_pred             cccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEcc-CCEE--EEcCCCEEECCEEEECCC
Confidence            5 7999999999999999999999999999999873 5432  456899999999999865

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.90  E-value=1.8e-21  Score=201.58  Aligned_cols=394  Identities=12%  Similarity=0.098  Sum_probs=216.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEeccccee
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFM   80 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l   80 (445)
                      |.+.+||+|||||++||+||+.|+++|++|+|+|+++++||++.|++.                    .+|.+|.|++++
T Consensus        10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~--------------------~g~~~~~g~~~~   69 (504)
T 1sez_A           10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQ--------------------DGLIWDEGANTM   69 (504)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEE--------------------TTEEEESSCCCB
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecc--------------------CCeEEecCCccc
Confidence            555789999999999999999999999999999999999999999887                    469999999998


Q ss_pred             ecC-chhHHHhhhccccCceeeEEe-cceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCccccc
Q 036458           81 MAN-GGLVRILIHTDVTKYLNFKAV-DGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHE  158 (445)
Q Consensus        81 ~~~-~~l~~~l~~~g~~~~l~~~~~-~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~  158 (445)
                      ... ..+.+++.++|+.+.+.|... ...|++.+|+.+.+|.+....+...+++..++.+.  +...+... ...+  ..
T Consensus        70 ~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~--~~  144 (504)
T 1sez_A           70 TESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQM--LLEPILWK-NKKL--SQ  144 (504)
T ss_dssp             CCCSHHHHHHHHHTTCGGGEECCSSCCCEEEESSSSEEECCSSHHHHHHSSSSCHHHHHHH--HTHHHHC----------
T ss_pred             ccCcHHHHHHHHHcCCcccceeccCCCceEEEECCeEEECCCCHHHHhccccCCHHHHHHH--hHhhhccC-cccc--cc
Confidence            754 467788888998776655432 23457778999999988555555555554433221  11111100 0000  00


Q ss_pred             cccCCCCCHHHHHHHcCCChhHHH-HHHHHh-hccccCCCCCCcHHHHHHHHHHHHH-----------H-hhhccC----
Q 036458          159 GLDLNKVTAREIISKYGLEDDTID-FIGHAL-ALHINDSYLEEPAMDFVKRIKLYAE-----------S-LARFQG----  220 (445)
Q Consensus       159 ~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~-----------s-~~~~~g----  220 (445)
                       ......|+.+|+++. +.+...+ ++.... ..+..+ ..+.++...+..+.....           . +....+    
T Consensus       145 -~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  221 (504)
T 1sez_A          145 -VSDSHESVSGFFQRH-FGKEVVDYLIDPFVAGTCGGD-PDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQG  221 (504)
T ss_dssp             ----CCCBHHHHHHHH-HCHHHHHTTHHHHHHHHHSCC-GGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC--------
T ss_pred             -cCCCCccHHHHHHHH-cCHHHHHHHHHHHHccccCCC-hHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhccccccccc
Confidence             012348999999764 4444433 332221 222211 112233333222211110           0 011000    


Q ss_pred             ----------CCceEEeCCCcchHHHHHHHHHHHcC-cEEEeCCcceeEEEcCCCc----EEEEE--e-CC---eEEEcC
Q 036458          221 ----------GSPYIYPLYGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDGDGK----VIGVT--S-EG---ETAKCK  279 (445)
Q Consensus       221 ----------~s~~~~p~gG~~~L~q~l~r~~~~~G-g~i~l~~~V~~I~~~~~g~----~~~v~--~-~g---~~~~ad  279 (445)
                                ...+++++||+++|+++|++   ..| ++|++|++|++|..++++.    .+.|+  . +|   ++++||
T Consensus       222 ~~~~~~~~~~~~~~~~~~GG~~~l~~~l~~---~l~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad  298 (504)
T 1sez_A          222 PPKTSANKKRQRGSFSFLGGMQTLTDAICK---DLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFD  298 (504)
T ss_dssp             --CCCSCCSTTCSCBEETTCTHHHHHHHHT---TSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEES
T ss_pred             ccchhhccccCCceEeeCcHHHHHHHHHHh---hcccceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECC
Confidence                      11356889999999998886   345 7899999999999854441    13343  2 45   578999


Q ss_pred             EEEECCCCC------C-----c---c-cccc--ceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEE-EEec-C
Q 036458          280 KVVCDPSYL------P-----D---K-VQKV--GKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYL-FCCS-Y  340 (445)
Q Consensus       280 ~VI~~~~~~------p-----~---~-~~~~--~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v-~~~s-~  340 (445)
                      +||++.+..      +     .   . .+..  ..+....+.++++... .....+.+++|..+......++- ...+ .
T Consensus       299 ~VI~a~p~~~l~~ll~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~-~~~~~~~~l~~~~~~~~g~~~~~~~~~s~~  377 (504)
T 1sez_A          299 AVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVDYVPLSVVITTFKRENVK-YPLEGFGVLVPSKEQQHGLKTLGTLFSSMM  377 (504)
T ss_dssp             EEEECSCHHHHHTSEEESSSSBCCCTTSCCCCEEEEEEEEEEEEGGGBS-SCCCSSEEECCGGGGGGTCCSSEEEEHHHH
T ss_pred             EEEECCCHHHHHHHhhcccCCcccHHHHhcCCCCceEEEEEEEchhhcC-CCCCceEEEcCCCCCCCCCccceEEeeccc
Confidence            999986531      0     0   0 1111  1233334445554311 11234567777543110111211 1122 3


Q ss_pred             CccccCCCcEEEEEEeeeCC------CCcccccHhHHhh----cCCcc-ccee---eeee---ccccC--------CC--
Q 036458          341 AHNVAPNGQYIAFVSTEAET------DNPEVELKPGIDL----LGPVD-EIFF---DTYD---RFVPT--------NN--  393 (445)
Q Consensus       341 ~~~~aP~G~~~~~vst~~~~------~~~~~~l~~~~~~----l~~~~-~~~~---~~~~---~~~~~--------~~--  393 (445)
                      .+..+|+|+.++...+....      .+.++.++.+++.    ++... ....   .|..   .|.+-        ..  
T Consensus       378 ~~~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~g~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~  457 (504)
T 1sez_A          378 FPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKAFPLYGHNYDSVLDAIDKME  457 (504)
T ss_dssp             CGGGSCTTEEEEEEEEESTTCGGGTTCCHHHHHHHHHHHHHHHHCBCSCCSSEEEEEEEEEEECCCTTHHHHHHHHHHHH
T ss_pred             cCCcCCCCCEEEEEEeCCCCcccccCCCHHHHHHHHHHHHHHHhCCCCCCeEEEEeECCCCCCccCcCHHHHHHHHHHHH
Confidence            45678999876644432211      1223334444443    33211 1111   1111   12111        00  


Q ss_pred             CCCCcEEEccCCCCCCccHhHHHHHHHHHHHhc
Q 036458          394 HEADHCFISTSYDATTHFESTVQDVLEMYTKIT  426 (445)
Q Consensus       394 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  426 (445)
                      ....|+|+++..-.+...+.|+...++.=++|.
T Consensus       458 ~~~~~l~~aG~~~~g~~v~gai~sG~~aA~~il  490 (504)
T 1sez_A          458 KNLPGLFYAGNHRGGLSVGKALSSGCNAADLVI  490 (504)
T ss_dssp             HHSTTEEECCSSSSCSSHHHHHHHHHHHHHHHH
T ss_pred             HhCCCEEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            013689998765445567888877777666664

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.90  E-value=4.6e-22  Score=207.06  Aligned_cols=256  Identities=17%  Similarity=0.235  Sum_probs=163.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEeccccee
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFM   80 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l   80 (445)
                      |...+||||||||++||+||+.|+++|++|+|+|+++++||++.|++..                   .++.+|+|++++
T Consensus         1 m~~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~-------------------~g~~~d~G~~~~   61 (520)
T 1s3e_A            1 MSNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQ-------------------KVKYVDLGGSYV   61 (520)
T ss_dssp             --CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCT-------------------TTSCEESSCCEE
T ss_pred             CCCCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccC-------------------CCcccccCceEe
Confidence            7788999999999999999999999999999999999999999998862                   258999999999


Q ss_pred             ecC-chhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCc--ccc
Q 036458           81 MAN-GGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDP--KSH  157 (445)
Q Consensus        81 ~~~-~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~--~~~  157 (445)
                      ... ..+.+++.+.|+..+..+.. ...+++.+|+.+.++..    +. ......+...+.+++..+..+....+  ..+
T Consensus        62 ~~~~~~~~~l~~~lgl~~~~~~~~-~~~~~~~~g~~~~~~~~----~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (520)
T 1s3e_A           62 GPTQNRILRLAKELGLETYKVNEV-ERLIHHVKGKSYPFRGP----FP-PVWNPITYLDHNNFWRTMDDMGREIPSDAPW  135 (520)
T ss_dssp             CTTCHHHHHHHHHTTCCEEECCCS-SEEEEEETTEEEEECSS----SC-CCCSHHHHHHHHHHHHHHHHHHTTSCTTCGG
T ss_pred             cCCcHHHHHHHHHcCCcceecccC-CceEEEECCEEEEecCC----CC-CCCCHHHHHHHHHHHHHHHHHHhhcCcCCCc
Confidence            754 46777788888764332211 22334567777666533    00 01122223334444444333322111  001


Q ss_pred             cc---ccCCCCCHHHHHHHcCCChhHHHHHHHHhh-ccccCCCCCCcHHHHHHHHHHHHHH---hhhccCCCceEEeCCC
Q 036458          158 EG---LDLNKVTAREIISKYGLEDDTIDFIGHALA-LHINDSYLEEPAMDFVKRIKLYAES---LARFQGGSPYIYPLYG  230 (445)
Q Consensus       158 ~~---~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~-l~~~~~~~~~~~~~~l~~i~~~~~s---~~~~~g~s~~~~p~gG  230 (445)
                      ..   ......|+.+|+++...++.+..++..... .+.. +..+.++...+..+..+...   +..- ....+.++.+|
T Consensus       136 ~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~g~-~~~~~s~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~gG  213 (520)
T 1s3e_A          136 KAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTA-ETHEVSALWFLWYVKQCGGTTRIISTT-NGGQERKFVGG  213 (520)
T ss_dssp             GSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSS-CTTTSBHHHHHHHHHTTTCHHHHHCST-TSTTSEEETTC
T ss_pred             cccchhhhhccCHHHHHHhhCCCHHHHHHHHHHHhhhcCC-ChHHhHHHHHHHHHhhcCchhhhcccC-CCcceEEEeCC
Confidence            10   012458999999988888888776644332 2221 12233555444332211000   0000 12345789999


Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCC
Q 036458          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSY  287 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~  287 (445)
                      +++|++++++.+   |++|++|++|++|..+ ++++.....+|+++.||+||++.+.
T Consensus       214 ~~~l~~~l~~~l---g~~i~~~~~V~~i~~~-~~~v~v~~~~g~~~~ad~VI~a~p~  266 (520)
T 1s3e_A          214 SGQVSERIMDLL---GDRVKLERPVIYIDQT-RENVLVETLNHEMYEAKYVISAIPP  266 (520)
T ss_dssp             THHHHHHHHHHH---GGGEESSCCEEEEECS-SSSEEEEETTSCEEEESEEEECSCG
T ss_pred             HHHHHHHHHHHc---CCcEEcCCeeEEEEEC-CCeEEEEECCCeEEEeCEEEECCCH
Confidence            999999998654   7899999999999874 5566533357889999999998653

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.90  E-value=2.2e-21  Score=199.42  Aligned_cols=386  Identities=11%  Similarity=0.140  Sum_probs=222.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCC--CeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPK   78 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~   78 (445)
                      |. .+||+|||||++||++|+.|+++|  ++|+|||+++++||+++|.+.                    .+|.+|.|++
T Consensus         2 m~-~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~--------------------~g~~~~~g~~   60 (475)
T 3lov_A            2 MS-SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYRE--------------------DGFTIERGPD   60 (475)
T ss_dssp             CC-SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECS--------------------TTCCEESSCC
T ss_pred             CC-cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEee--------------------CCEEEecCch
Confidence            54 589999999999999999999999  999999999999999999887                    4689999999


Q ss_pred             eeec-CchhHHHhhhccccCceeeEEecceEEEeCCeEEEccCC--------hHHHhhccccCchhHHHHHHHHHHHHhh
Q 036458           79 FMMA-NGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPAT--------DVEALKSPLMGLFEKRRARKFFIYVQEY  149 (445)
Q Consensus        79 ~l~~-~~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~--------~~~~~~~~l~~~~~k~~~~~f~~~~~~~  149 (445)
                      ++.. ...+.+++.++|+...+........+++.+|+.+.+|..        ....+...+++..++.   .+.......
T Consensus        61 ~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~  137 (475)
T 3lov_A           61 SYVARKHILTDLIEAIGLGEKLVRNNTSQAFILDTGGLHPIPKGAVMGIPTDLDLFRQTTLLTEEEKQ---EVADLLLHP  137 (475)
T ss_dssp             CEETTSTHHHHHHHHTTCGGGEEECCCCCEEEEETTEEEECCSSEETTEESCHHHHTTCSSSCHHHHH---HHHHHHHSC
T ss_pred             hhhcccHHHHHHHHHcCCcceEeecCCCceEEEECCEEEECCCcccccCcCchHHHhhccCCChhHHH---HhhCcccCC
Confidence            8875 456778888899876655432445677888988887754        2344445556555443   222221111


Q ss_pred             hccCccccccccCCCCCHHHHHHHcCCChhHHH-HHHHHh-hccccCCCCCCcHHHHHHHHHHHHHHhhh-------c--
Q 036458          150 EEDDPKSHEGLDLNKVTAREIISKYGLEDDTID-FIGHAL-ALHINDSYLEEPAMDFVKRIKLYAESLAR-------F--  218 (445)
Q Consensus       150 ~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~~s~~~-------~--  218 (445)
                        ..+   .....+..++.+|+++. +.+...+ ++.... ..+..+ ..+.++...+..+..+....+.       .  
T Consensus       138 --~~~---~~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~-~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~  210 (475)
T 3lov_A          138 --SDS---LRIPEQDIPLGEYLRPR-LGDALVEKLIEPLLSGIYAGN-IDQMSTFATYPQFVANEQKAGSLFEGMRLMRP  210 (475)
T ss_dssp             --CTT---CCCCSSCCBHHHHHHHH-HCHHHHHHTHHHHHHGGGCCC-TTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC
T ss_pred             --ccc---ccCCCCCcCHHHHHHHH-hCHHHHHHHHHHHhceeecCC-hHHcCHHHHHHHHHHHHHhcCcHHHHHHHhcc
Confidence              000   00123468999999763 3444433 332222 222211 1111222122222211111100       0  


Q ss_pred             ------------cCCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECC
Q 036458          219 ------------QGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDP  285 (445)
Q Consensus       219 ------------~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~  285 (445)
                                  ..+..+.++++|++.|++++++.+..  ++|+++++|++|..+ ++.+ .|++ +| ++.||+||++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~-~~~~-~v~~~~g-~~~ad~vV~a~  285 (475)
T 3lov_A          211 LDQLPQTPQTTIKATGQFLSLETGLESLIERLEEVLER--SEIRLETPLLAISRE-DGRY-RLKTDHG-PEYADYVLLTI  285 (475)
T ss_dssp             --------------CCSEEEETTCHHHHHHHHHHHCSS--CEEESSCCCCEEEEE-TTEE-EEECTTC-CEEESEEEECS
T ss_pred             cccccccccccccCCCcEEeeCChHHHHHHHHHhhccC--CEEEcCCeeeEEEEe-CCEE-EEEECCC-eEECCEEEECC
Confidence                        01346789999999999999876543  799999999999984 4444 3554 66 89999999986


Q ss_pred             CCC------Ccc----ccc--cceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEEEe-c-CCccccCCCcEE
Q 036458          286 SYL------PDK----VQK--VGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCC-S-YAHNVAPNGQYI  351 (445)
Q Consensus       286 ~~~------p~~----~~~--~~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~-s-~~~~~aP~G~~~  351 (445)
                      +..      +..    ...  ...+.+..+.++++. .. ......+++|..+   ...++-+.. + ..+..+|. ..+
T Consensus       286 p~~~~~~ll~~~~~~~~~~~~~~~~~~v~l~~~~~~-~~-~~~g~g~l~~~~~---~~~~~~~~~~s~~~~~~~p~-~~~  359 (475)
T 3lov_A          286 PHPQVVQLLPDAHLPELEQLTTHSTATVTMIFDQQQ-SL-PIEGTGFVVNRRA---PYSITACTAIDQKWNHSAPD-HTV  359 (475)
T ss_dssp             CHHHHHHHCTTSCCHHHHTCCEEEEEEEEEEEECCS-SC-SSSSSEEEECTTS---SCSEEEEEEHHHHCTTTCTT-EEE
T ss_pred             CHHHHHHHcCccCHHHHhcCCCCeEEEEEEEECCcC-CC-CCCCEEEEecCCC---CCceEEEEEEcccCCCCCCC-cEE
Confidence            532      110    001  123444555567766 22 1234456666543   223433332 2 23455676 444


Q ss_pred             EEEEeeeCC------CCcccccHhHHhh----cCCc-cccee---eeee---ccccCC--------C---CCCCcEEEcc
Q 036458          352 AFVSTEAET------DNPEVELKPGIDL----LGPV-DEIFF---DTYD---RFVPTN--------N---HEADHCFIST  403 (445)
Q Consensus       352 ~~vst~~~~------~~~~~~l~~~~~~----l~~~-~~~~~---~~~~---~~~~~~--------~---~~~~~~~~~~  403 (445)
                      +......+.      .+.++.++.+++.    ++.- ...+.   .|..   .|.+-.        .   ...+|+|++.
T Consensus       360 l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~g~~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG  439 (475)
T 3lov_A          360 LRAFVGRPGNDHLVHESDEVLQQAVLQDLEKICGRTLEPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLAG  439 (475)
T ss_dssp             EEEEECBTTBCGGGGSCHHHHHHHHHHHHHHHHSSCCCCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHSTTEEECS
T ss_pred             EEEEeCCCCCCcccCCCHHHHHHHHHHHHHHHhCCCCCCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEc
Confidence            433332111      1223333334433    3311 11111   1221   222110        0   0126899998


Q ss_pred             CCCCCCccHhHHHHHHHHHHHhcCC
Q 036458          404 SYDATTHFESTVQDVLEMYTKITGK  428 (445)
Q Consensus       404 ~~d~~~~~~~~~~~~~~~~~~~~~~  428 (445)
                      ..-.....+.|+...+.+-++|...
T Consensus       440 ~~~~g~g~~~a~~sG~~aA~~i~~~  464 (475)
T 3lov_A          440 LAYDGVGLPDCVASAKTMIESIELE  464 (475)
T ss_dssp             TTTSCSSHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            6555667899999999999888653

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.89  E-value=1.3e-22  Score=209.73  Aligned_cols=255  Identities=17%  Similarity=0.140  Sum_probs=163.2

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec-
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA-   82 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~-   82 (445)
                      ++||+|||||++||+||+.|+++|++|+|||+++++||++.|++.                    .++.+|+|++++.. 
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~--------------------~g~~~d~G~~~~~~~   98 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNI--------------------DGYPYEMGGTWVHWH   98 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEE--------------------TTEEEECSCCCBCTT
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceeccc--------------------CCeeecCCCeEecCc
Confidence            489999999999999999999999999999999999999999887                    46999999999974 


Q ss_pred             CchhHHHhhhccccCceeeEE----ecceEEEeC--CeEEEccCChHHHhhccccCchhHHHHHHHHHHHH-hhhccCcc
Q 036458           83 NGGLVRILIHTDVTKYLNFKA----VDGSFVYNK--GKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQ-EYEEDDPK  155 (445)
Q Consensus        83 ~~~l~~~l~~~g~~~~l~~~~----~~~~~~~~~--g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~-~~~~~~~~  155 (445)
                      ...+++++.++|+.+.+....    ....|++.+  |+...+|...   +..    .+. ..+.+|+.... ......+.
T Consensus        99 ~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~----~~~-~~~~~~~~~~~~~~~~~~~~  170 (495)
T 2vvm_A           99 QSHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEA---EDE----LLR-SALHKFTNVDGTNGRTVLPF  170 (495)
T ss_dssp             SHHHHHHHHHTTCTTCEEESCCCSSSCCEEEEESSTTCCEEECHHH---HHH----HHH-HHHHHHHCSSSSTTTTTCSC
T ss_pred             cHHHHHHHHHcCCcceeecccccCCCceEEEecCCCCceeecCHHH---HHH----HHH-HHHHHHHccchhhhhhcCCC
Confidence            457778888888866554432    123455555  6666666321   100    011 11222222000 00000000


Q ss_pred             cccc------ccCCCCCHHHHHHHcC--CChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEe
Q 036458          156 SHEG------LDLNKVTAREIISKYG--LEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYP  227 (445)
Q Consensus       156 ~~~~------~~~~~~s~~~~~~~~~--l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p  227 (445)
                      .+..      ..++..|+.+|+++++  +++..+.++...+......+..+.++...+..+......+..+......+++
T Consensus       171 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (495)
T 2vvm_A          171 PHDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKF  250 (495)
T ss_dssp             TTSTTSSTTHHHHHTSBHHHHHHHHGGGCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSEEE
T ss_pred             CCCcccCcchhhhhhhhHHHHHHHhhccCCHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhceEEe
Confidence            0000      0124579999999887  8888777665443322212222335555544322110001100011234578


Q ss_pred             CCCcchHHHHHHHHHHHcC-cEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCC
Q 036458          228 LYGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSY  287 (445)
Q Consensus       228 ~gG~~~L~q~l~r~~~~~G-g~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~  287 (445)
                      .+|+++|+++|++.+...| ++|+++++|++|..+ ++.+.....+|++++||+||++.+.
T Consensus       251 ~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~-~~~v~v~~~~g~~~~ad~vI~a~~~  310 (495)
T 2vvm_A          251 KDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNE-RDAARVTARDGREFVAKRVVCTIPL  310 (495)
T ss_dssp             TTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEEC-SSSEEEEETTCCEEEEEEEEECCCG
T ss_pred             CCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEc-CCEEEEEECCCCEEEcCEEEECCCH
Confidence            9999999999999998888 999999999999884 5554433346778999999998663

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.87  E-value=3.1e-21  Score=197.11  Aligned_cols=253  Identities=14%  Similarity=0.203  Sum_probs=156.6

Q ss_pred             CC-CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccce
Q 036458            1 MD-EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKF   79 (445)
Q Consensus         1 m~-~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~   79 (445)
                      |+ .++||+|||+|++||+||+.|+++|++|+|+|+++++||++.+.+.                    .++.+|+|+++
T Consensus         1 m~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~--------------------~g~~~~~g~~~   60 (453)
T 2yg5_A            1 VPTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI--------------------DGAVLEIGGQW   60 (453)
T ss_dssp             -CEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEE--------------------TTEEEECSCCC
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceecccc--------------------CCceeccCCeE
Confidence            54 4689999999999999999999999999999999999999999887                    35899999999


Q ss_pred             eecC-chhHHHhhhccccCceeeEEecceEE-EeC-CeEEEccCChHHHhhccccCchhHHHHHHHHHHHHh----hhcc
Q 036458           80 MMAN-GGLVRILIHTDVTKYLNFKAVDGSFV-YNK-GKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQE----YEED  152 (445)
Q Consensus        80 l~~~-~~l~~~l~~~g~~~~l~~~~~~~~~~-~~~-g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~----~~~~  152 (445)
                      +... ..+.+++.+.|+..+..+.  +...+ +.+ |+.+.++....      .++......+.+++..+..    ....
T Consensus        61 ~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (453)
T 2yg5_A           61 VSPDQTALISLLDELGLKTFERYR--EGESVYISSAGERTRYTGDSF------PTNETTKKEMDRLIDEMDDLAAQIGAE  132 (453)
T ss_dssp             BCTTCHHHHHHHHHTTCCEEECCC--CSEEEEECTTSCEEEECSSSC------SCCHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             ecCccHHHHHHHHHcCCccccccc--CCCEEEEeCCCceeeccCCCC------CCChhhHHHHHHHHHHHHHHHhhcCCC
Confidence            8753 4677788888876443332  12222 222 55555432200      0111111112222211111    1111


Q ss_pred             Cccccc-cccCCCCCHHHHHHHcCCChhHHHHHHHHhh-ccccCCCC-CCcHHHHHHHHHHHHHHhhhc--cCCCceEEe
Q 036458          153 DPKSHE-GLDLNKVTAREIISKYGLEDDTIDFIGHALA-LHINDSYL-EEPAMDFVKRIKLYAESLARF--QGGSPYIYP  227 (445)
Q Consensus       153 ~~~~~~-~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~-l~~~~~~~-~~~~~~~l~~i~~~~~s~~~~--~g~s~~~~p  227 (445)
                      .+.... .......|+.+|+++++.++.++.++..... .+..+ .. +.++...+..+..+. ++...  ..+....++
T Consensus       133 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~g-~~~~~~~~~~~~~~~~  210 (453)
T 2yg5_A          133 EPWAHPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTK-PAHSFSALQAVLMAASAG-SFSHLVDEDFILDKRV  210 (453)
T ss_dssp             CGGGSTTHHHHHSSBHHHHHHHHCSCHHHHHHHHHHHCCCCCCS-CTTSSBHHHHHHHHHHTT-CHHHHHCHHHHTCEEE
T ss_pred             CCCCCcchhhhhhccHHHHHHhhcCCHHHHHHHHHHHHhhcccC-CcccccHHHHHHHhccCC-cHhhhccCCCcceEEE
Confidence            110000 0012458999999988888888876654432 22211 11 335554443322110 00000  001234689


Q ss_pred             CCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCC
Q 036458          228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSY  287 (445)
Q Consensus       228 ~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~  287 (445)
                      ++|++.|++++++.   .|++|++|++|++|..+ +++.+.|+++|+++.||+||++.+.
T Consensus       211 ~gG~~~l~~~l~~~---lg~~i~~~~~V~~i~~~-~~~~v~v~~~~~~~~ad~VI~a~p~  266 (453)
T 2yg5_A          211 IGGMQQVSIRMAEA---LGDDVFLNAPVRTVKWN-ESGATVLADGDIRVEASRVILAVPP  266 (453)
T ss_dssp             TTCTHHHHHHHHHH---HGGGEECSCCEEEEEEE-TTEEEEEETTTEEEEEEEEEECSCG
T ss_pred             cCChHHHHHHHHHh---cCCcEEcCCceEEEEEe-CCceEEEEECCeEEEcCEEEEcCCH
Confidence            99999999999864   37899999999999884 5542446678889999999998653

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.84  E-value=1.1e-19  Score=187.27  Aligned_cols=375  Identities=11%  Similarity=0.102  Sum_probs=208.0

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCCCCccccc-chhhhhhhhcCCCCCCCccCCCCCeEEeccccee
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYYGGESTSL-NLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFM   80 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~GG~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l   80 (445)
                      ..+||+|||||++||++|+.|+++| ++|+|+|+++++||++.++ +.                    .+|.+|.|++++
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~--------------------~g~~~~~g~~~~   67 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDE--------------------NGFTWDLGGHVI   67 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECT--------------------TSCEEESSCCCB
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecC--------------------CCcEEeeCCccc
Confidence            4689999999999999999999999 8999999999999999996 44                    479999999998


Q ss_pred             ecCch-hHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhH-HHHHHHHHHHHhhhccCccccc
Q 036458           81 MANGG-LVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEK-RRARKFFIYVQEYEEDDPKSHE  158 (445)
Q Consensus        81 ~~~~~-l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k-~~~~~f~~~~~~~~~~~~~~~~  158 (445)
                      ....+ +.+++.+.. .++..  .....+++.+|+++++|.+..  +  ..++..++ +.+..++..    ....+    
T Consensus        68 ~~~~~~~~~l~~~~~-~~~~~--~~~~~~~~~~g~~~~~P~~~~--~--~~l~~~~~~~~~~~ll~~----~~~~~----  132 (484)
T 4dsg_A           68 FSHYQYFDDVMDWAV-QGWNV--LQRESWVWVRGRWVPYPFQNN--I--HRLPEQDRKRCLDELVRS----HARTY----  132 (484)
T ss_dssp             CCSBHHHHHHHHHHC-SCEEE--EECCCEEEETTEEEESSGGGC--G--GGSCHHHHHHHHHHHHHH----HHCCC----
T ss_pred             ccChHHHHHHHHHHh-hhhhh--ccCceEEEECCEEEEeCccch--h--hhCCHHHHHHHHHHHHHH----HhccC----
Confidence            76554 444554443 32222  223456778999999984311  1  11222111 112222222    11111    


Q ss_pred             cccCCCCCHHHHHHHcCCChhHHH-HHHHH-hhcccc--C--------CCCCCcHHHHHHHHHHHHHHhh--hccCCCce
Q 036458          159 GLDLNKVTAREIISKYGLEDDTID-FIGHA-LALHIN--D--------SYLEEPAMDFVKRIKLYAESLA--RFQGGSPY  224 (445)
Q Consensus       159 ~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~-~~l~~~--~--------~~~~~~~~~~l~~i~~~~~s~~--~~~g~s~~  224 (445)
                        .....++.+|+.+. +.+.+.+ ++... -.++..  +        ..+..+....  -++..+....  .+.....|
T Consensus       133 --~~~~~s~~e~~~~~-~g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~--~~~~~~~~~~~~~~~~~~~f  207 (484)
T 4dsg_A          133 --TEPPNNFEESFTRQ-FGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLER--IRRNIQENRDDLGWGPNATF  207 (484)
T ss_dssp             --SSCCSSHHHHHHHH-HHHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHH--HHHHHHHTCCCCCCSTTSEE
T ss_pred             --CCCCCCHHHHHHHH-hHHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHH--HHHHHhhcccccCCCccceE
Confidence              12457899988643 2222211 11110 011110  0        0111111111  1111111110  01013347


Q ss_pred             EEeC-CCcchHHHHHHHHHHHcCcEEEeC--CcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC-------------
Q 036458          225 IYPL-YGLGELPQAFARLSAVYGGTYMLN--KPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL-------------  288 (445)
Q Consensus       225 ~~p~-gG~~~L~q~l~r~~~~~Gg~i~l~--~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~-------------  288 (445)
                      .||. ||++.|++++++.+..  .+++++  ++|++|..+ ++++  ...+|+++.||+||++.+..             
T Consensus       208 ~yp~~gG~~~l~~~la~~l~~--~~i~~~~~~~V~~I~~~-~~~v--~~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~  282 (484)
T 4dsg_A          208 RFPQRGGTGIIYQAIKEKLPS--EKLTFNSGFQAIAIDAD-AKTI--TFSNGEVVSYDYLISTVPFDNLLRMTKGTGFKG  282 (484)
T ss_dssp             EEESSSCTHHHHHHHHHHSCG--GGEEECGGGCEEEEETT-TTEE--EETTSCEEECSEEEECSCHHHHHHHEECSSCTT
T ss_pred             EeecCCCHHHHHHHHHhhhhh--CeEEECCCceeEEEEec-CCEE--EECCCCEEECCEEEECCCHHHHHHHhhccCCCC
Confidence            8887 7999999999876533  279999  569999873 5543  23578899999999986531             


Q ss_pred             Ccccc----cc--ceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEEEec-CCccccCCCcEEEEEEeeeCC-
Q 036458          289 PDKVQ----KV--GKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCS-YAHNVAPNGQYIAFVSTEAET-  360 (445)
Q Consensus       289 p~~~~----~~--~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~s-~~~~~aP~G~~~~~vst~~~~-  360 (445)
                      |...+    ..  ..+....+.++.+... .-...+++++|..+.   +...+..++ .++..+|+|+.++++...... 
T Consensus       283 ~~~~~~~l~~l~y~s~~~v~l~~~~~~~~-~~~~~~~i~vp~~~~---~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~~~  358 (484)
T 4dsg_A          283 YDEWPAIADKMVYSSTNVIGIGVKGTPPP-HLKTACWLYFPEDTS---PFYRATVFSNYSKYNVPEGHWSLMLEVSESKY  358 (484)
T ss_dssp             GGGHHHHHHHCCEEEEEEEEEEEESCCCG-GGTTCCEEECCSTTC---SCSEEECGGGTCGGGSCTTEEEEEEEEEEBTT
T ss_pred             CHHHHHHHhCCCcCceEEEEEEEcCCCcc-cCCCCeEEEEEcCCC---eEEEEEeecCCCcccCCCCeEEEEEEEecCcC
Confidence            11110    11  1222233345555321 002356778886542   112344444 567889999998877765431 


Q ss_pred             --CCcccccHhHHhhc---CCc------ccceee----eeeccccC--------CC-CCCCcEEEccC---CCCCC-ccH
Q 036458          361 --DNPEVELKPGIDLL---GPV------DEIFFD----TYDRFVPT--------NN-HEADHCFISTS---YDATT-HFE  412 (445)
Q Consensus       361 --~~~~~~l~~~~~~l---~~~------~~~~~~----~~~~~~~~--------~~-~~~~~~~~~~~---~d~~~-~~~  412 (445)
                        .+.++.++.+++-|   +-+      ...++.    -...|.+-        .. ....||++++-   +-... .-|
T Consensus       359 ~~~~d~~l~~~a~~~L~~~~~~~~~~~~~~~~v~r~~~~yP~y~~~~~~~~~~~~~~l~~~~l~~~Gr~g~~~y~v~~~d  438 (484)
T 4dsg_A          359 KPVNHSTLIEDCIVGCLASNLLLPEDLLVSKWHYRIEKGYPTPFIGRNNLLEKAQPELMSRCIYSRGRFGAWRYEVGNQD  438 (484)
T ss_dssp             BCCCTTSHHHHHHHHHHHTTSCCTTCCEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTEEECSTTTTCCGGGCSHH
T ss_pred             CcCCHHHHHHHHHHHHHHcCCCCccceEEEEEEEEeCccccCCCccHHHHHHHHHHHHHhCCcEeecCCcccccCCCChH
Confidence              23344555565522   111      111121    11122211        00 01128999875   44432 468


Q ss_pred             hHHHHHHHHHHHhc
Q 036458          413 STVQDVLEMYTKIT  426 (445)
Q Consensus       413 ~~~~~~~~~~~~~~  426 (445)
                      .|+..++.+.++|.
T Consensus       439 ~~i~sg~~aa~~i~  452 (484)
T 4dsg_A          439 HSFMQGVEAIDHVL  452 (484)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999998

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.81  E-value=2e-19  Score=182.15  Aligned_cols=247  Identities=16%  Similarity=0.177  Sum_probs=146.2

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEeccccee
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFM   80 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l   80 (445)
                      .+++||+|||||++||+||++|+++| ++|+|+|+++++||++.|++.                    .++.+|+|++++
T Consensus         4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~--------------------~G~~~d~G~~~~   63 (424)
T 2b9w_A            4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNY--------------------HGRRYEMGAIMG   63 (424)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEE--------------------TTEECCSSCCCB
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCC--------------------CCcccccCceee
Confidence            46799999999999999999999999 999999999999999999887                    469999999998


Q ss_pred             ecC-chhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHh-hhccCcc-cc
Q 036458           81 MAN-GGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQE-YEEDDPK-SH  157 (445)
Q Consensus        81 ~~~-~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~-~~~~~~~-~~  157 (445)
                      ... ..+.+++.++|+.-  ........+.+.+|+.+ +|....  ....  .+  ...+.++...+.. +...... .+
T Consensus        64 ~~~~~~~~~l~~~~g~~~--~~~~~~~~~~~~~g~~~-~~~~~~--~~~~--~~--~~~~~~l~~~~~~~~~~~~~~~~~  134 (424)
T 2b9w_A           64 VPSYDTIQEIMDRTGDKV--DGPKLRREFLHEDGEIY-VPEKDP--VRGP--QV--MAAVQKLGQLLATKYQGYDANGHY  134 (424)
T ss_dssp             CTTCHHHHHHHHHHCCCC--CSCCCCEEEECTTSCEE-CGGGCT--THHH--HH--HHHHHHHHHHHHTTTTTTTSSSSS
T ss_pred             cCCcHHHHHHHHHhCCcc--ccccccceeEcCCCCEe-ccccCc--ccch--hH--HHHHHHHHHHHhhhhhhcccccch
Confidence            754 45666777777642  11112223445566654 332100  0000  00  0112233222221 1100000 00


Q ss_pred             c-cccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHH
Q 036458          158 E-GLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQ  236 (445)
Q Consensus       158 ~-~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q  236 (445)
                      . .......|+.+|+++.+.+.....++...+..... +..+.|+...+..+... . +..+ ...+.+++.+|++++++
T Consensus       135 ~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~-~-~~~~-~~~~~~~~~~g~~~l~~  210 (424)
T 2b9w_A          135 NKVHEDLMLPFDEFLALNGCEAARDLWINPFTAFGYG-HFDNVPAAYVLKYLDFV-T-MMSF-AKGDLWTWADGTQAMFE  210 (424)
T ss_dssp             SCCCGGGGSBHHHHHHHTTCGGGHHHHTTTTCCCCCC-CTTTSBHHHHHHHSCHH-H-HHHH-HHTCCBCCTTCHHHHHH
T ss_pred             hhhhhhhccCHHHHHHhhCcHHHHHHHHHHHHhhccC-ChHhcCHHHHHHhhhHh-h-hhcc-cCCceEEeCChHHHHHH
Confidence            0 00123479999999887765332222111111111 12234655544322111 0 0011 11123467899999999


Q ss_pred             HHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 036458          237 AFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPS  286 (445)
Q Consensus       237 ~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~  286 (445)
                      ++.+.   .+.++++|++|++|..+ ++++. |++++.++.||.||++.+
T Consensus       211 ~l~~~---l~~~v~~~~~V~~i~~~-~~~v~-v~~~~g~~~ad~Vv~a~~  255 (424)
T 2b9w_A          211 HLNAT---LEHPAERNVDITRITRE-DGKVH-IHTTDWDRESDVLVLTVP  255 (424)
T ss_dssp             HHHHH---SSSCCBCSCCEEEEECC-TTCEE-EEESSCEEEESEEEECSC
T ss_pred             HHHHh---hcceEEcCCEEEEEEEE-CCEEE-EEECCCeEEcCEEEECCC
Confidence            88653   46789999999999874 55555 655444589999999865

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.78  E-value=1.4e-18  Score=176.15  Aligned_cols=248  Identities=14%  Similarity=0.117  Sum_probs=144.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC-
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN-   83 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~-   83 (445)
                      |||||||||++||+||+.|+++|++|+|||+++++||++.+.+..-                 ..++.+|+|++++... 
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~c-----------------ipg~~~~~g~~~~~~~~   64 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRN-----------------VPGLRVEIGGAYLHRKH   64 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSS-----------------STTCEEESSCCCBCTTT
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccC-----------------CCCceEecCCeeeCCCC
Confidence            7999999999999999999999999999999999999999877620                 0268999999998653 


Q ss_pred             -chhHHHhhhccccCceeeEEecceEE--EeCCeEEEc-cCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccccc
Q 036458           84 -GGLVRILIHTDVTKYLNFKAVDGSFV--YNKGKIYKV-PATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEG  159 (445)
Q Consensus        84 -~~l~~~l~~~g~~~~l~~~~~~~~~~--~~~g~~~~v-p~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~  159 (445)
                       ..+.+.+.+.|+....  .......+  +.+++.... |.. .+.     .... +..+.++......+....+.....
T Consensus        65 ~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~-~~~~~~l~~~~~~~~~~~~~~~~~  135 (431)
T 3k7m_X           65 HPRLAAELDRYGIPTAA--ASEFTSFRHRLGPTAVDQAFPIP-GSE-----AVAV-EAATYTLLRDAHRIDLEKGLENQD  135 (431)
T ss_dssp             CHHHHHHHHHHTCCEEE--CCCCCEECCBSCTTCCSSSSCCC-GGG-----HHHH-HHHHHHHHHHHTTCCTTTCTTSSS
T ss_pred             cHHHHHHHHHhCCeeee--cCCCCcEEEEecCCeecCCCCCC-HHH-----HHHH-HHHHHHHHHHHHhcCCCCCccCcc
Confidence             4566777777764211  11111111  122221111 111 000     0001 112333333333322111111011


Q ss_pred             -ccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhh-ccCCCceEEeCCCcchHHHH
Q 036458          160 -LDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLAR-FQGGSPYIYPLYGLGELPQA  237 (445)
Q Consensus       160 -~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~-~~g~s~~~~p~gG~~~L~q~  237 (445)
                       ...+ .++.++++..+.++....++...+.........+.++.+.+..+...-..+.. +.+. .. .+.+|++.++++
T Consensus       136 ~~~~d-~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~g~~~l~~~  212 (431)
T 3k7m_X          136 LEDLD-IPLNEYVDKLDLPPVSRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSL-DE-VFSNGSADLVDA  212 (431)
T ss_dssp             CGGGC-SBHHHHHHHHTCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHTC-CE-EETTCTHHHHHH
T ss_pred             hhhhc-CCHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHhcCCccceeecch-hh-hcCCcHHHHHHH
Confidence             1223 78999999888888776654333221111111123444444332211000000 1022 22 779999888886


Q ss_pred             HHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 036458          238 FARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPS  286 (445)
Q Consensus       238 l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~  286 (445)
                      +.   +..| +|++|++|++|..+ ++.+...+.+|++++||+||++.+
T Consensus       213 ~~---~~~g-~i~~~~~V~~i~~~-~~~v~v~~~~g~~~~ad~vi~a~~  256 (431)
T 3k7m_X          213 MS---QEIP-EIRLQTVVTGIDQS-GDVVNVTVKDGHAFQAHSVIVATP  256 (431)
T ss_dssp             HH---TTCS-CEESSCCEEEEECS-SSSEEEEETTSCCEEEEEEEECSC
T ss_pred             HH---hhCC-ceEeCCEEEEEEEc-CCeEEEEECCCCEEEeCEEEEecC
Confidence            65   3456 99999999999874 455543334677899999999876

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.76  E-value=5.7e-18  Score=176.03  Aligned_cols=233  Identities=13%  Similarity=0.143  Sum_probs=130.6

Q ss_pred             cccEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA   82 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~   82 (445)
                      .+||||||||++||+||..|+++| ++|+|||+++++||++.|.+..                   .++.+|+|++++..
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~-------------------~G~~~D~G~~~~~~   68 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGY-------------------QGRKYDIGASWHHD   68 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECG-------------------GGCEEESSCCEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecC-------------------CCcEEecCCeEEec
Confidence            589999999999999999999999 9999999999999999998752                   35899999999874


Q ss_pred             --CchhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhc-cCcccccc
Q 036458           83 --NGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEE-DDPKSHEG  159 (445)
Q Consensus        83 --~~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~-~~~~~~~~  159 (445)
                        ..++++++.++++...      ...+++.+++...++.+. ..+......     .+.+++..+..+.. ....   .
T Consensus        69 ~~~~~~~~~~~~lg~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~  133 (516)
T 1rsg_A           69 TLTNPLFLEEAQLSLNDG------RTRFVFDDDNFIYIDEER-GRVDHDKEL-----LLEIVDNEMSKFAELEFHQ---H  133 (516)
T ss_dssp             TTTCHHHHHHHHHHHHHC------CCCEECCCCCCEEEETTT-EECTTCTTT-----CHHHHHHHHHHHHHHHC------
T ss_pred             CCCChHHHHHHHhCCCCc------ceeEEECCCCEEEEcCCC-ccccccHHH-----HHHHHHHHHHHHHHHHhhh---c
Confidence              3467777767665211      011233334333333321 000000000     11112211111110 0000   0


Q ss_pred             ccCCCCCHHHHHHHc------CCChhHHHHHHHHhh---ccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCC
Q 036458          160 LDLNKVTAREIISKY------GLEDDTIDFIGHALA---LHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYG  230 (445)
Q Consensus       160 ~~~~~~s~~~~~~~~------~l~~~~~~~i~~~~~---l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG  230 (445)
                      ....+.|+.+++.++      .+.+....++...+.   .+........++...          +... .+ ...++++ 
T Consensus       134 ~~~~d~s~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~----------~~~~-~~-~~~~~~g-  200 (516)
T 1rsg_A          134 LGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDT----------YFGH-QG-RNAFALN-  200 (516)
T ss_dssp             ----CCBHHHHHHHHHHHHGGGSCHHHHHHHHHHHGGGHHHHTBCTTTSBHHHH----------CCCC-SS-CCEEESC-
T ss_pred             cCCCCCCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhCCChHHCChHHH----------Hhhc-cC-cchhhhC-
Confidence            012347888876542      233332222222111   111111111122111          1111 12 2246777 


Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCC
Q 036458          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPS  286 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~  286 (445)
                      ++.|+++|++.+.  +++|++|++|++|..++++. +.|+ .+|++++||+||++.+
T Consensus       201 ~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~-v~v~~~~g~~~~ad~VI~t~p  254 (516)
T 1rsg_A          201 YDSVVQRIAQSFP--QNWLKLSCEVKSITREPSKN-VTVNCEDGTVYNADYVIITVP  254 (516)
T ss_dssp             HHHHHHHHHTTSC--GGGEETTCCEEEEEECTTSC-EEEEETTSCEEEEEEEEECCC
T ss_pred             HHHHHHHHHHhCC--CCEEEECCEEEEEEEcCCCe-EEEEECCCcEEECCEEEECCC
Confidence            8888888876442  36899999999999842333 4455 4778899999999864

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.75  E-value=5.9e-17  Score=167.43  Aligned_cols=245  Identities=18%  Similarity=0.201  Sum_probs=144.9

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA   82 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~   82 (445)
                      ..+||+|||||++||+||..|+++|++|+|+|+++++||++.+++...                  .++.+|+|++++..
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~------------------~~~~~~~g~~~~~~   93 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEE------------------AGWYANLGPMRLPE   93 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETT------------------TTEEEESSCCCEET
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCC------------------CCchhhcCcccccc
Confidence            468999999999999999999999999999999999999999887421                  46999999999876


Q ss_pred             Cch-hHHHhhhccccCceeeEEe-cceEEEeCCeEEEccC---ChHHHhhccccCchhH---------HHHHHHHHHHHh
Q 036458           83 NGG-LVRILIHTDVTKYLNFKAV-DGSFVYNKGKIYKVPA---TDVEALKSPLMGLFEK---------RRARKFFIYVQE  148 (445)
Q Consensus        83 ~~~-l~~~l~~~g~~~~l~~~~~-~~~~~~~~g~~~~vp~---~~~~~~~~~l~~~~~k---------~~~~~f~~~~~~  148 (445)
                      ... +.+++.+.|+... .+... ...+++.+|.....+.   + ...+...+ ...++         ..+.++...+..
T Consensus        94 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (498)
T 2iid_A           94 KHRIVREYIRKFDLRLN-EFSQENDNAWYFIKNIRKKVGEVKKD-PGLLKYPV-KPSEAGKSAGQLYEESLGKVVEELKR  170 (498)
T ss_dssp             TCHHHHHHHHHTTCCEE-EECSCCTTSEEEETTEEEEHHHHHHC-GGGGCCCC-CGGGTTCCHHHHHHHHTHHHHHHHHH
T ss_pred             hHHHHHHHHHHhCCCce-eecccCCccEEEeCCeeecccccccC-ccccccCC-CccccCCCHHHHHHHHHHHHHHHHhh
Confidence            544 4556666776421 22211 2234445565443321   1 01111110 00000         011122222211


Q ss_pred             hhccCccccccccCCCCCHHHHHHHcC-CChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEe
Q 036458          149 YEEDDPKSHEGLDLNKVTAREIISKYG-LEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYP  227 (445)
Q Consensus       149 ~~~~~~~~~~~~~~~~~s~~~~~~~~~-l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p  227 (445)
                      ...  .....  .++..++.+|+++.+ +++..++.+...+....  .+ .....+.+....       .+.....++++
T Consensus       171 ~~~--~~~~~--~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~-------~~~~~~~~~~~  236 (498)
T 2iid_A          171 TNC--SYILN--KYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDS--GY-YVSFIESLKHDD-------IFAYEKRFDEI  236 (498)
T ss_dssp             SCH--HHHHH--HHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCGG--GT-TSBHHHHHHHHH-------HHTTCCCEEEE
T ss_pred             ccH--HHHHH--HhhhhhHHHHHHHccCCCHHHHHHHHHhcCccc--ch-hHHHHHHHHHHh-------ccccCcceEEe
Confidence            100  00001  124578999998766 66766655543321111  11 112222221110       11123456789


Q ss_pred             CCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCe----EEEcCEEEECCC
Q 036458          228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGE----TAKCKKVVCDPS  286 (445)
Q Consensus       228 ~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~----~~~ad~VI~~~~  286 (445)
                      .+|++.|+++|++.+.   .+|++|++|++|..+ ++++.....+|+    +++||+||++.+
T Consensus       237 ~gG~~~l~~~l~~~l~---~~i~~~~~V~~I~~~-~~~v~v~~~~~~~~~~~~~ad~vI~t~p  295 (498)
T 2iid_A          237 VDGMDKLPTAMYRDIQ---DKVHFNAQVIKIQQN-DQKVTVVYETLSKETPSVTADYVIVCTT  295 (498)
T ss_dssp             TTCTTHHHHHHHHHTG---GGEESSCEEEEEEEC-SSCEEEEEECSSSCCCEEEESEEEECSC
T ss_pred             CCcHHHHHHHHHHhcc---cccccCCEEEEEEEC-CCeEEEEEecCCcccceEEeCEEEECCC
Confidence            9999999999987654   379999999999984 555433334443    589999999865

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.75  E-value=2.8e-17  Score=163.04  Aligned_cols=239  Identities=11%  Similarity=0.170  Sum_probs=141.9

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecC-CCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEeccccee
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN-AYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFM   80 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n-~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l   80 (445)
                      ...+||+|||||++||+||+.|+++|++|+|+|++ +++||++.|++...         ..+..+ ...++.+|+|++++
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~---------~~~~~~-~~~~~~~e~G~~~~  111 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKK---------GEPSPF-ADPAQYAEAGAMRL  111 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCT---------TSCCSS-SSTTCCEESSCCCE
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccc---------cccccc-cCCCcEEecCceee
Confidence            34689999999999999999999999999999999 99999999887421         000000 01468999999998


Q ss_pred             ecCc-hhHHHhhhccccCceeeEEe-----------------------------------------cceEEEeCCeEEEc
Q 036458           81 MANG-GLVRILIHTDVTKYLNFKAV-----------------------------------------DGSFVYNKGKIYKV  118 (445)
Q Consensus        81 ~~~~-~l~~~l~~~g~~~~l~~~~~-----------------------------------------~~~~~~~~g~~~~v  118 (445)
                      .... .+.+++.+.|+.....+..-                                         ...+++.+|+....
T Consensus       112 ~~~~~~~~~~~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~q~~r~~~~~~~~~~~g~~~~~  191 (376)
T 2e1m_A          112 PSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTNGAPSPEFKEPDKRNHTWIRTNREQVRR  191 (376)
T ss_dssp             ETTCHHHHHHHHHTTCCEEEECSSCCCTTSSBCSSCCCCCEEECSSTTCEEESSCCCTTCBCCCCCCCSEEEETTEEEEH
T ss_pred             cchHHHHHHHHHHcCCCcceeeccccccccccccccccccceeeeccceeEeccCCcccccccccCCCceEEECCceecc
Confidence            7543 45567777887654322110                                         12234455554432


Q ss_pred             c---CChHHHhh--ccc------cCchh--HHHHHHHHHHHHhhhcc-------Cc---ccccc--ccCCCCCHHHHHH-
Q 036458          119 P---ATDVEALK--SPL------MGLFE--KRRARKFFIYVQEYEED-------DP---KSHEG--LDLNKVTAREIIS-  172 (445)
Q Consensus       119 p---~~~~~~~~--~~l------~~~~~--k~~~~~f~~~~~~~~~~-------~~---~~~~~--~~~~~~s~~~~~~-  172 (445)
                      .   .+ ...+.  ..+      ..+.+  .+.+.+|+..+......       .+   ..+..  ..+++.|+.+|++ 
T Consensus       192 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~S~~~~L~~  270 (376)
T 2e1m_A          192 AQYATD-PSSINEGFHLTGCETRLTVSDMVNQALEPVRDYYSVKQDDGTRVNKPFKEWLAGWADVVRDFDGYSMGRFLRE  270 (376)
T ss_dssp             HHHHHC-THHHHHHTTCCGGGGGSCHHHHHHHHHHHHHHHHEEEETTTEEEECCHHHHHHHHHHHHHHHTTCBHHHHHHH
T ss_pred             cccccC-HHHhccccCCchhhcccCHHHHHHHHHHHHHHhhhhccccccccccccchhhccchHHHHHHhCCCHHHHHhh
Confidence            1   01 01111  000      01101  12333344332210000       00   00111  1246799999998 


Q ss_pred             HcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHHHHHHHHHHcCcEEEeC
Q 036458          173 KYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLN  252 (445)
Q Consensus       173 ~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~  252 (445)
                      ..++++..++++.......   .....++.+.+..       ...+.+...++.+.||++.|+++|++.+   +..+++|
T Consensus       271 ~~g~s~~~~~~~~~~~~~~---~~~~~s~l~~l~~-------~~~~~~~~~~~~i~GG~~~l~~~l~~~l---~~~i~l~  337 (376)
T 2e1m_A          271 YAEFSDEAVEAIGTIENMT---SRLHLAFFHSFLG-------RSDIDPRATYWEIEGGSRMLPETLAKDL---RDQIVMG  337 (376)
T ss_dssp             TSCCCHHHHHHHHHHTTCT---TTTTSBHHHHHHH-------CSCSCTTCCEEEETTCTTHHHHHHHHHG---GGTEECS
T ss_pred             ccCCCHHHHHHHHhhcCcc---ccchhhHHHHHHH-------hhhhccCCceEEECCcHHHHHHHHHHhc---CCcEEec
Confidence            7899999888764433211   1113344444321       1112134557788999999999998754   5789999


Q ss_pred             CcceeEEEcCCC
Q 036458          253 KPECKVEFDGDG  264 (445)
Q Consensus       253 ~~V~~I~~~~~g  264 (445)
                      ++|++|..+++|
T Consensus       338 ~~V~~I~~~~~g  349 (376)
T 2e1m_A          338 QRMVRLEYYDPG  349 (376)
T ss_dssp             EEEEEEEECCCC
T ss_pred             CeEEEEEECCCc
Confidence            999999986454

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.74  E-value=2e-17  Score=170.50  Aligned_cols=265  Identities=15%  Similarity=0.100  Sum_probs=139.4

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceee
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMM   81 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~   81 (445)
                      .+.+||+|||||++||+||+.|+++|++|+|+|+++++||++.+.+....+....   ..........++.+|.|++++.
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~   85 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLS---GETQKCTFSEGHFYNVGATRIP   85 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTCEEECTT---SCEEECCCCTTCEEESSCCCEE
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCccccccc---chhhhhcccCCCcCCcchhhcc
Confidence            4578999999999999999999999999999999999999998887531100000   0000011125688999999887


Q ss_pred             cCchhHHHhhhccccCceeeEEe-cceEEE-eC-----CeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCc
Q 036458           82 ANGGLVRILIHTDVTKYLNFKAV-DGSFVY-NK-----GKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDP  154 (445)
Q Consensus        82 ~~~~l~~~l~~~g~~~~l~~~~~-~~~~~~-~~-----g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~  154 (445)
                      ....+.+++.+.|+... .+... ...+++ .+     |+...+|....+ +.    .     .+..++.......... 
T Consensus        86 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~----~-----~~~~l~~~~~~~~~~~-  153 (489)
T 2jae_A           86 QSHITLDYCRELGVEIQ-GFGNQNANTFVNYQSDTSLSGQSVTYRAAKAD-TF----G-----YMSELLKKATDQGALD-  153 (489)
T ss_dssp             TTSTHHHHHHHHTCCEE-EECCCCTTSEEECCCSSTTTTCCEEHHHHHHH-HH----H-----HHHHHHHHHHHHTTTT-
T ss_pred             cHHHHHHHHHHcCCceE-EccccCCCceEEecCCcccCCccccHHHHhhh-hh----c-----cHHHHHHHHHhccccc-
Confidence            65578888888887421 12111 223454 44     555554422111 10    0     0111111111100000 


Q ss_pred             cccccccCCCCCHHHHHHHcCCChhHHHHHHHHhhccc----cCCCCCC---c-HHHHHHH--HHHHHHHhhhccCCCce
Q 036458          155 KSHEGLDLNKVTAREIISKYGLEDDTIDFIGHALALHI----NDSYLEE---P-AMDFVKR--IKLYAESLARFQGGSPY  224 (445)
Q Consensus       155 ~~~~~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~----~~~~~~~---~-~~~~l~~--i~~~~~s~~~~~g~s~~  224 (445)
                      ....  ..+..++.+|+++++-......+-......+.    ....+..   + ..+.+..  +..++.....+.....+
T Consensus       154 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (489)
T 2jae_A          154 QVLS--REDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMM  231 (489)
T ss_dssp             TTSC--HHHHHHHHHHHHHHTTCCTTSCCCCCGGGCEEECCCBTTCCCEECCCCCHHHHHHHTTTTTGGGGGCTTTSSSE
T ss_pred             cccc--hhhHHHHHHHHHHhhhhhhccccccccchhhccCCCcccccCCCCCCcCHHHHhhhhHHHHHhhhhccccCccE
Confidence            0000  00123566666543210000000000000000    0000000   0 1111100  00011111011123457


Q ss_pred             EEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCC---eEEEcCEEEECCC
Q 036458          225 IYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEG---ETAKCKKVVCDPS  286 (445)
Q Consensus       225 ~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g---~~~~ad~VI~~~~  286 (445)
                      +++++|++.|+++|++.+..  ++|++|++|++|..+ ++++.....+|   ++++||+||++.+
T Consensus       232 ~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~-~~~v~v~~~~g~~~~~~~ad~vI~a~p  293 (489)
T 2jae_A          232 FTPVGGMDRIYYAFQDRIGT--DNIVFGAEVTSMKNV-SEGVTVEYTAGGSKKSITADYAICTIP  293 (489)
T ss_dssp             EEETTCTTHHHHHHHHHHCG--GGEETTCEEEEEEEE-TTEEEEEEEETTEEEEEEESEEEECSC
T ss_pred             EeecCCHHHHHHHHHHhcCC--CeEEECCEEEEEEEc-CCeEEEEEecCCeEEEEECCEEEECCC
Confidence            78999999999999875531  789999999999985 55555333455   6899999999865

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.73  E-value=2.3e-18  Score=173.23  Aligned_cols=353  Identities=13%  Similarity=0.163  Sum_probs=191.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhC-CCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEe-cccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVD-GLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVD-MIPK   78 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iD-lgp~   78 (445)
                      |.+++||+|||||++||+||+.|+++ |++|+|+|+++++||++.|.+...                  .++.+| .|++
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~------------------~g~~~~~~G~~   65 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQ------------------TGIEVHKYGAH   65 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTT------------------TCCEEETTSCC
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccC------------------CCEEEEeCCCc
Confidence            55679999999999999999999999 999999999999999999987621                  358885 9999


Q ss_pred             eeecC-chhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCch-hHHHHHHHHHHHHhhhccCccc
Q 036458           79 FMMAN-GGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLF-EKRRARKFFIYVQEYEEDDPKS  156 (445)
Q Consensus        79 ~l~~~-~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~-~k~~~~~f~~~~~~~~~~~~~~  156 (445)
                      ++... ..+.+++.+.|+...  +  ....+++.+|+.+++|.+. ..+. .+.... ....+.+++.....  .. .  
T Consensus        66 ~~~~~~~~~~~~~~~~g~~~~--~--~~~~~~~~~G~~~~~p~~~-~~~~-~l~~~~~~~~~~~~~l~~~~~--~~-~--  134 (399)
T 1v0j_A           66 LFHTSNKRVWDYVRQFTDFTD--Y--RHRVFAMHNGQAYQFPMGL-GLVS-QFFGKYFTPEQARQLIAEQAA--EI-D--  134 (399)
T ss_dssp             CEEESCHHHHHHHTTTCCBCC--C--CCCEEEEETTEEEEESSSH-HHHH-HHHTSCCCHHHHHHHHHHHGG--GS-C--
T ss_pred             EEcCCcHHHHHHHHHhhhhhc--c--ccceEEEECCEEEeCCCCH-HHHH-HHhcccCCHHHHHHHHHHHhh--cc-C--
Confidence            98754 467777777776221  1  1234567799999999873 2221 111111 11223322222211  10 0  


Q ss_pred             cccccCCCCCHHHHHHHcCCChhHHH-HHHHH-hhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceE-EeCCCcch
Q 036458          157 HEGLDLNKVTAREIISKYGLEDDTID-FIGHA-LALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYI-YPLYGLGE  233 (445)
Q Consensus       157 ~~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~-~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~-~p~gG~~~  233 (445)
                          .....|+.+|+.+. +.+...+ ++... ...+..+. .+.++..+ .++......-..+ +...+. +|++|+++
T Consensus       135 ----~~~~~s~~e~l~~~-~g~~~~~~~~~~~~~~~~~~~~-~~ls~~~~-~~~~~~~~~~~~~-~~~~~~~~p~gG~~~  206 (399)
T 1v0j_A          135 ----TADAQNLEEKAISL-IGRPLYEAFVKGYTAKQWQTDP-KELPAANI-TRLPVRYTFDNRY-FSDTYEGLPTDGYTA  206 (399)
T ss_dssp             ----TTC----CCHHHHH-HCHHHHHHHTHHHHHHHHTSCG-GGSCGGGC-SCCCCCSSSCCCS-CCCSEEECBTTHHHH
T ss_pred             ----CCCcccHHHHHHHH-HhHHHHHHHHHHHHHhhcCCCh-hhcChHhh-hcceeEeccccch-hhhhhcccccccHHH
Confidence                11347888888753 4444433 33222 12222111 01122111 0000000000111 222453 99999999


Q ss_pred             HHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEE-EcCEEEECCCCC--Cc-cccccc--eEEEEEEeecc
Q 036458          234 LPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETA-KCKKVVCDPSYL--PD-KVQKVG--KVARAICIMNH  307 (445)
Q Consensus       234 L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~-~ad~VI~~~~~~--p~-~~~~~~--~~~r~i~i~~~  307 (445)
                      |+++|++   ..|++|++|++|++|..+       |  +  ++ .||+||++.+.-  .. ....+.  .+....+.++.
T Consensus       207 l~~~l~~---~~g~~I~l~~~V~~I~~~-------v--~--~~~~aD~VI~t~p~~~l~~~~l~~l~y~s~~~~~~~~~~  272 (399)
T 1v0j_A          207 WLQNMAA---DHRIEVRLNTDWFDVRGQ-------L--R--PGSPAAPVVYTGPLDRYFDYAEGRLGWRTLDFEVEVLPI  272 (399)
T ss_dssp             HHHHHTC---STTEEEECSCCHHHHHHH-------H--T--TTSTTCCEEECSCHHHHTTTTTCCCCEEEEEEEEEEESS
T ss_pred             HHHHHHh---cCCeEEEECCchhhhhhh-------h--h--hcccCCEEEECCcHHHHHhhhhCCCCcceEEEEEEEEcc
Confidence            9998875   568999999999998541       1  1  34 699999986521  11 011111  11112223344


Q ss_pred             CCCCCCCCCceEEEeCCCcCCCCCCEEEEEec-CCcccc-CCCcEEEEEEeeeCCCCcccccHhHHhhcCCcccceee--
Q 036458          308 PIPDTNDSHSCQVILPQKQLGRKSDMYLFCCS-YAHNVA-PNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDEIFFD--  383 (445)
Q Consensus       308 ~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~s-~~~~~a-P~G~~~~~vst~~~~~~~~~~l~~~~~~l~~~~~~~~~--  383 (445)
                      +.  ..  ...++.+|..... ...  +..++ ..+..+ |+++.++......+- ++        .    ....|-.  
T Consensus       273 ~~--~~--~~~~~~~~~~~~~-~~r--i~~~~~~~~~~~~~~~~~~v~~e~~~~~-~~--------~----~~~~ypv~~  332 (399)
T 1v0j_A          273 GD--FQ--GTAVMNYNDLDVP-YTR--IHEFRHFHPERDYPTDKTVIMREYSRFA-ED--------D----DEPYYPINT  332 (399)
T ss_dssp             SC--SS--SSSEEEECCTTSS-CSE--EEEGGGGCTTSCCCSSCEEEEEEEEEEC-CT--------T----SCCCEECCC
T ss_pred             cc--CC--CCeEEEeCCCCCC-cce--eEeecCCCCCCcCCCCCeEEEEeecccc-cC--------C----CccccccCc
Confidence            32  11  2235667753321 122  33333 345555 678887777654310 10        0    0111110  


Q ss_pred             --eee---ccccCCCCCC---CcEEEcc---CCCCCCccHhHHHHHHHHHHHhc
Q 036458          384 --TYD---RFVPTNNHEA---DHCFIST---SYDATTHFESTVQDVLEMYTKIT  426 (445)
Q Consensus       384 --~~~---~~~~~~~~~~---~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~  426 (445)
                        ...   .|.... ...   .|+++++   +|.. ...|+|+..++++.+++.
T Consensus       333 ~~~~~~~~~~~~~~-~~~~~~~~v~~~G~~~~~~~-~~~e~~i~sa~~~a~~l~  384 (399)
T 1v0j_A          333 EADRALLATYRARA-KSETASSKVLFGGRLGTYQY-LDMHMAIASALNMYDNVL  384 (399)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHCEEECHHHHHTCC-CCHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHH-HhccccCCEEEccceEEEEe-cCHHHHHHHHHHHHHHHh
Confidence              001   111111 012   5899987   4655 356999999999999885

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.72  E-value=1.3e-17  Score=166.79  Aligned_cols=227  Identities=13%  Similarity=0.170  Sum_probs=139.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEE-ecccce
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNV-DMIPKF   79 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i-Dlgp~~   79 (445)
                      |+ ++||+|||+|++||++|..|+++|++|+|+|+++++||++.+.....                  .++.+ |.|+++
T Consensus         1 m~-~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~------------------~g~~~~~~G~~~   61 (384)
T 2bi7_A            1 MK-SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSE------------------TNVMVHVYGPHI   61 (384)
T ss_dssp             -C-CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTT------------------TCCEEETTSCCC
T ss_pred             CC-cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccC------------------CCceEeeCCceE
Confidence            55 48999999999999999999999999999999999999999987632                  46776 999999


Q ss_pred             eecC-chhHHHhhhccccCceeeEEe-cceEEEeCCeEEEccCChHHHhhccccCch-hHHHHHHHHHHHHhhhccCccc
Q 036458           80 MMAN-GGLVRILIHTDVTKYLNFKAV-DGSFVYNKGKIYKVPATDVEALKSPLMGLF-EKRRARKFFIYVQEYEEDDPKS  156 (445)
Q Consensus        80 l~~~-~~l~~~l~~~g~~~~l~~~~~-~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~-~k~~~~~f~~~~~~~~~~~~~~  156 (445)
                      +... .++.+++.+.+.     +... ...+++.+|+.+.+|.+. ..+.. +.... ....+.+++.   .....    
T Consensus        62 ~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~g~~~~~P~~~-~~~~~-l~~~~~~~~~~~~~l~---~~~~~----  127 (384)
T 2bi7_A           62 FHTDNETVWNYVNKHAE-----MMPYVNRVKATVNGQVFSLPINL-HTINQ-FFSKTCSPDEARALIA---EKGDS----  127 (384)
T ss_dssp             EEESCHHHHHHHHTTSC-----EEECCCCEEEEETTEEEEESCCH-HHHHH-HTTCCCCHHHHHHHHH---HHSCC----
T ss_pred             ECCCCHHHHHHHHHHhh-----hcccccceEEEECCEEEECCCCh-hHHHH-HhcccCCHHHHHHHHH---Hhhhc----
Confidence            9854 466677766664     2222 234566789999999883 33322 11111 1222333332   22111    


Q ss_pred             cccccCCCCCHHHHHHHcCCChhHHH-HHHHH-hhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceE-EeCCCcch
Q 036458          157 HEGLDLNKVTAREIISKYGLEDDTID-FIGHA-LALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYI-YPLYGLGE  233 (445)
Q Consensus       157 ~~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~-~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~-~p~gG~~~  233 (445)
                       .  .....|+.+|+.+. +.+.+.+ ++... .+.+..+. .+.++... .++.........| ....|. +|++|+++
T Consensus       128 -~--~~~~~sl~e~~~~~-~g~~~~~~~~~p~~~~~~~~~~-~~ls~~~~-~r~~~~~~~~~~~-~~~~~~~~p~gG~~~  200 (384)
T 2bi7_A          128 -T--IADPQTFEEEALRF-IGKELYEAFFKGYTIKQWGMQP-SELPASIL-KRLPVRFNYDDNY-FNHKFQGMPKCGYTQ  200 (384)
T ss_dssp             -S--CSSCCBHHHHHHHH-HCHHHHHHHTHHHHHHHHSSCG-GGSBGGGC-CSCCCCSSSCCCS-CCCSEEEEETTHHHH
T ss_pred             -c--CCCCcCHHHHHHHh-hcHHHHHHHHHHHHHHHhCCCH-HHhCHHHH-hcccccccccccc-ccccccEEECcCHHH
Confidence             0  12457999998765 4455443 33221 22332111 01111110 0000000000112 223454 99999999


Q ss_pred             HHHHHHHHHHHcCcEEEeCCcce-eEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 036458          234 LPQAFARLSAVYGGTYMLNKPEC-KVEFDGDGKVIGVTSEGETAKCKKVVCDPS  286 (445)
Q Consensus       234 L~q~l~r~~~~~Gg~i~l~~~V~-~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~  286 (445)
                      |++++++   ..|++|++|++|+ +|..                .+|+||++.+
T Consensus       201 l~~~l~~---~~g~~I~l~~~V~~~i~~----------------~~d~VI~a~p  235 (384)
T 2bi7_A          201 MIKSILN---HENIKVDLQREFIVEERT----------------HYDHVFYSGP  235 (384)
T ss_dssp             HHHHHHC---STTEEEEESCCCCGGGGG----------------GSSEEEECSC
T ss_pred             HHHHHHh---cCCCEEEECCeeehhhhc----------------cCCEEEEcCC
Confidence            9998875   4688999999999 8842                1899999865

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.71  E-value=1.3e-17  Score=166.64  Aligned_cols=346  Identities=15%  Similarity=0.193  Sum_probs=192.3

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEE-eccccee
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNV-DMIPKFM   80 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i-Dlgp~~l   80 (445)
                      ...+||+|||||++||++|+.|+++|++|+|+|+++++||++.+....                   .++.+ |.|++++
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~-------------------~G~~~~~~G~~~~   87 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDD-------------------AGVLIHPYGPHIF   87 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECT-------------------TSCEECTTSCCCC
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeecc-------------------CCceEeecCCccc
Confidence            356899999999999999999999999999999999999999987631                   46776 9999998


Q ss_pred             ecC-chhHHHhhhccccCceeeEE-ecceEEEeCCeEEEccCChHHHhhccccCc-hhHHHHHHHHHHHHhhhccCcccc
Q 036458           81 MAN-GGLVRILIHTDVTKYLNFKA-VDGSFVYNKGKIYKVPATDVEALKSPLMGL-FEKRRARKFFIYVQEYEEDDPKSH  157 (445)
Q Consensus        81 ~~~-~~l~~~l~~~g~~~~l~~~~-~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~-~~k~~~~~f~~~~~~~~~~~~~~~  157 (445)
                      ... ..+.+++.+.+.     +.. ....+++.+|+++++|.+. ..+. .+.++ ...+....++.   .  ...+   
T Consensus        88 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~l~~lP~~~-~~~~-~l~~~~~~~~~~~~~l~---~--~~~~---  152 (397)
T 3hdq_A           88 HTNSKDVFEYLSRFTE-----WRPYQHRVLASVDGQLLPIPINL-DTVN-RLYGLNLTSFQVEEFFA---S--VAEK---  152 (397)
T ss_dssp             EESCHHHHHHHHTSCC-----EEECCCBEEEEETTEEEEESCCH-HHHH-HHHTCCCCHHHHHHHHH---H--HCCC---
T ss_pred             CCChHHHHHHHHHhhh-----cccccccceEEECCEEEEcCCCh-HHHH-HhhccCCCHHHHHHHHh---h--cccC---
Confidence            854 466677766663     222 2344577899999999883 3221 12111 11123333332   1  1111   


Q ss_pred             ccccCCCCCHHHHHHHcCCChhHHH-HHHHH-hhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCce-EEeCCCcchH
Q 036458          158 EGLDLNKVTAREIISKYGLEDDTID-FIGHA-LALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPY-IYPLYGLGEL  234 (445)
Q Consensus       158 ~~~~~~~~s~~~~~~~~~l~~~~~~-~i~~~-~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~-~~p~gG~~~L  234 (445)
                         ..+..|+.+|+.+. +.+.+.+ ++... ...+..+. -+-++. .+.|+......-..| -...| .+|++|.+.|
T Consensus       153 ---~~~~~s~~e~~~~~-~G~~~~e~~~~py~~k~~~~~~-~~Lsa~-~~~Rvp~~~~~d~~y-f~~~~qg~P~gGy~~l  225 (397)
T 3hdq_A          153 ---VEQVRTSEDVVVSK-VGRDLYNKFFRGYTRKQWGLDP-SELDAS-VTARVPTRTNRDNRY-FADTYQAMPLHGYTRM  225 (397)
T ss_dssp             ---CSSCCBHHHHHHHH-HHHHHHHHHTHHHHHHHHSSCG-GGSBTT-TGGGSCCCSSCCCBS-CCCSEEEEETTCHHHH
T ss_pred             ---CCCCcCHHHHHHHh-cCHHHHHHHHHHHhCchhCCCH-HHHHHH-HHHhcCcccccCccc-hhhhheeccCCCHHHH
Confidence               12457999988643 3343333 33222 23333211 011221 122221100000111 12345 3799999999


Q ss_pred             HHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCC---CCccccccc-eEEEEE-EeeccCC
Q 036458          235 PQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSY---LPDKVQKVG-KVARAI-CIMNHPI  309 (445)
Q Consensus       235 ~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~---~p~~~~~~~-~~~r~i-~i~~~~i  309 (445)
                      .++|+   +..|++|+||++|.++              +.++.+|.||++.+.   +.-....+. +-.+.+ ..++.+ 
T Consensus       226 ~e~l~---~~~g~~V~l~~~v~~~--------------~~~~~~d~vI~T~P~d~~~~~~~g~L~yrsl~~~~~~~~~~-  287 (397)
T 3hdq_A          226 FQNML---SSPNIKVMLNTDYREI--------------ADFIPFQHMIYTGPVDAFFDFCYGKLPYRSLEFRHETHDTE-  287 (397)
T ss_dssp             HHHHT---CSTTEEEEESCCGGGT--------------TTTSCEEEEEECSCHHHHTTTTTCCCCEEEEEEEEEEESSS-
T ss_pred             HHHHH---hccCCEEEECCeEEec--------------cccccCCEEEEcCCHHHHHHHhcCCCCCceEEEEEEEeccc-
Confidence            88775   4569999999999854              122457899998642   100011111 111222 223432 


Q ss_pred             CCCCCCCceEEEeCCCcCCCCCCE-EEEEecCCccccCCCcEEEEEEeeeCCCCcccccHhHHhhcCCccc-ceeeeeec
Q 036458          310 PDTNDSHSCQVILPQKQLGRKSDM-YLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDLLGPVDE-IFFDTYDR  387 (445)
Q Consensus       310 ~~~~~~~~~~i~~p~~~~~~~~~i-~v~~~s~~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~  387 (445)
                       +.  ...+++.+|...     +. -|..++.=+.. |.+++++....+.++++|-          -||.. .-......
T Consensus       288 -~~--~~~~~vn~~d~~-----p~tRi~e~k~~~~~-~~~~t~i~~Ey~~~~~~py----------Ypv~~~~~~~~~~~  348 (397)
T 3hdq_A          288 -QL--LPTGTVNYPNDY-----AYTRVSEFKHITGQ-RHHQTSVVYEYPRAEGDPY----------YPVPRPENAELYKK  348 (397)
T ss_dssp             -CS--CSSSEEECSSSS-----SCSEEEEHHHHHCC-CCSSEEEEEEEEESSSSCC----------EECCSHHHHHHHHH
T ss_pred             -cC--CCCeEEEeCCCC-----cceEEEeecccCCC-CCCCEEEEEEECCCCCccc----------cccCchhHHHHHHH
Confidence             11  235677888432     22 24555421233 5578888777766443331          11110 00000011


Q ss_pred             cccCCCCCCCcEEEcc---CCCCCCccHhHHHHHHHHHHHhcC
Q 036458          388 FVPTNNHEADHCFIST---SYDATTHFESTVQDVLEMYTKITG  427 (445)
Q Consensus       388 ~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~  427 (445)
                      |.... ...+||++.+   .|-. .+.|.++.+++++++++..
T Consensus       349 y~~~a-~~~~~v~~~GRlg~y~Y-~~md~~i~~al~~~~~~~~  389 (397)
T 3hdq_A          349 YEALA-DAAQDVTFVGRLATYRY-YNMDQVVAQALATFRRLQG  389 (397)
T ss_dssp             HHHHH-HHCTTEEECSTTTTTCC-CCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHH-hcCCCEEEcccceEEEe-ccHHHHHHHHHHHHHHHhc
Confidence            22110 0136888864   4444 4669999999999999864

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.69  E-value=1.3e-16  Score=163.99  Aligned_cols=241  Identities=14%  Similarity=0.162  Sum_probs=133.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccce
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKF   79 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~   79 (445)
                      |...+||+|||+|++||++|..|+++|+ +|+|+|+++++||++.+.+.                    .++.+|+|+++
T Consensus         1 ~~~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~--------------------~~~~~d~g~~~   60 (472)
T 1b37_A            1 ATVGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNF--------------------AGINVELGANW   60 (472)
T ss_dssp             ----CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEE--------------------TTEEEESSCCE
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeeccc--------------------CCcEEeeCCeE
Confidence            4567999999999999999999999998 89999999999999999887                    46999999999


Q ss_pred             eec-----CchhHHHhhh-ccccCcee-eEEecceEEE-eCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhc
Q 036458           80 MMA-----NGGLVRILIH-TDVTKYLN-FKAVDGSFVY-NKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEE  151 (445)
Q Consensus        80 l~~-----~~~l~~~l~~-~g~~~~l~-~~~~~~~~~~-~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~  151 (445)
                      +..     ..++.+++.+ +|+..... +.. ...+++ .+|+.++.+     .+. ..+.+..  .+.+|...+..   
T Consensus        61 ~~~~~~~~~~~~~~~~~~~lgl~~~~~~~~~-~~~~~~~~~g~~~~~~-----~~~-~~~~~~~--~~~~~~~~~~~---  128 (472)
T 1b37_A           61 VEGVNGGKMNPIWPIVNSTLKLRNFRSDFDY-LAQNVYKEDGGVYDED-----YVQ-KRIELAD--SVEEMGEKLSA---  128 (472)
T ss_dssp             EEEESSSSCCTHHHHHHTTSCCCEEECCCTT-GGGCEECSSSSBCCHH-----HHH-HHHHHHH--HHHHHHHHHHH---
T ss_pred             EeccCCCCCCHHHHHHHhhcCCceeeccCcc-ccceeEcCCCCCCCHH-----HHH-HHHHHHH--HHHHHHHHHHH---
Confidence            972     2367778877 77753211 100 111233 255543221     110 0111111  12222221111   


Q ss_pred             cCccccccccCCCCCHHH--HHHHcC---CChhHHHHHHHHh-hc-cccCCCCCCcHHHHHHHHHHHHHHhhhccCCC-c
Q 036458          152 DDPKSHEGLDLNKVTARE--IISKYG---LEDDTIDFIGHAL-AL-HINDSYLEEPAMDFVKRIKLYAESLARFQGGS-P  223 (445)
Q Consensus       152 ~~~~~~~~~~~~~~s~~~--~~~~~~---l~~~~~~~i~~~~-~l-~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s-~  223 (445)
                      ..+.    ...++.++.+  ++.+..   .......++.... .+ +.... ...+....+. ...    +..+ +.. -
T Consensus       129 ~~~~----~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~-~~~----~~~~-~~~~~  197 (472)
T 1b37_A          129 TLHA----SGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPP-RVTSLQNTVP-LAT----FSDF-GDDVY  197 (472)
T ss_dssp             TSCT----TCTTCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHHHSSCG-GGBBSTTTSS-CHH----HHHH-CSEEE
T ss_pred             hhcc----ccchhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhhhcccc-cccchhhccc-ccc----cccc-CCcee
Confidence            1110    1123355543  333221   1111111121111 00 01000 0000000000 000    1112 222 2


Q ss_pred             eEEeCCCcchHHHHHHHHHHHc--------CcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCC
Q 036458          224 YIYPLYGLGELPQAFARLSAVY--------GGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPS  286 (445)
Q Consensus       224 ~~~p~gG~~~L~q~l~r~~~~~--------Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~  286 (445)
                      +.++.+|++.|++++++.+...        |++|+++++|++|..+ ++++. |+ .+|++++||+||++.+
T Consensus       198 ~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~vI~a~~  267 (472)
T 1b37_A          198 FVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS-PGGVT-VKTEDNSVYSADYVMVSAS  267 (472)
T ss_dssp             EECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEEC-SSCEE-EEETTSCEEEESEEEECSC
T ss_pred             eeecCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEc-CCcEE-EEECCCCEEEcCEEEEecC
Confidence            3345899999999998876544        6799999999999984 55555 54 4778999999999865

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.66  E-value=9.6e-17  Score=159.56  Aligned_cols=227  Identities=16%  Similarity=0.193  Sum_probs=137.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEe-cccceeec
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVD-MIPKFMMA   82 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iD-lgp~~l~~   82 (445)
                      ++||+|||+|++||++|..|+++|++|+|+|+++++||++.+...                    .++.+| .||+++..
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~--------------------~g~~~~~~G~~~~~~   60 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDC--------------------EGIQIHKYGAHIFHT   60 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEE--------------------TTEEEETTSCCCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeecc--------------------CCceeeccCCceecC
Confidence            479999999999999999999999999999999999999999876                    458896 99999886


Q ss_pred             C-chhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCcccccccc
Q 036458           83 N-GGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLD  161 (445)
Q Consensus        83 ~-~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~~~  161 (445)
                      . ..+.+++.+.+...  .+.  ...+++.+|+.+.+|.+. ..+.. ++.......+.+|+.....   ..    .  .
T Consensus        61 ~~~~~~~~~~~l~~~~--~~~--~~~~~~~~g~~~~~p~~~-~~~~~-l~~~~~~~~~~~~l~~~~~---~~----~--~  125 (367)
T 1i8t_A           61 NDKYIWDYVNDLVEFN--RFT--NSPLAIYKDKLFNLPFNM-NTFHQ-MWGVKDPQEAQNIINAQKK---KY----G--D  125 (367)
T ss_dssp             SCHHHHHHHHTTSCBC--CCC--CCCEEEETTEEEESSBSH-HHHHH-HHCCCCHHHHHHHHHHHTT---TT----C--C
T ss_pred             CCHHHHHHHHHhhhhh--hcc--ccceEEECCeEEEcCCCH-HHHHH-HhccCCHHHHHHHHHHHhh---cc----C--C
Confidence            4 35566665555421  111  223456689999999873 33322 1111112233444433221   11    1  1


Q ss_pred             CCCCCHHHHHHHcCCChhHHH-HHHHH-hhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceE-EeCCCcchHHHHH
Q 036458          162 LNKVTAREIISKYGLEDDTID-FIGHA-LALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYI-YPLYGLGELPQAF  238 (445)
Q Consensus       162 ~~~~s~~~~~~~~~l~~~~~~-~i~~~-~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~-~p~gG~~~L~q~l  238 (445)
                      ....|+.+|+.+. +.+.+.+ ++... .+.+..+. .+.|+... .++......-..| ....|. +|++|+++|+++|
T Consensus       126 ~~~~s~~~~~~~~-~g~~~~~~~~~p~~~~~~~~~~-~~lsa~~~-~~l~~~~~~~~~~-~~~~~~~~p~gG~~~l~~~l  201 (367)
T 1i8t_A          126 KVPENLEEQAISL-VGEDLYQALIKGYTEKQWGRSA-KELPAFII-KRIPVRFTFDNNY-FSDRYQGIPVGGYTKLIEKM  201 (367)
T ss_dssp             CCCCSHHHHHHHH-HHHHHHHHHTHHHHHHHHSSCG-GGSCTTSS-CCCCBCSSSCCCS-CCCSEEECBTTCHHHHHHHH
T ss_pred             CCCccHHHHHHHH-HhHHHHHHHHHHHHhhhhCCCh-HHcCHHHH-hhceeeecccccc-ccchhhcccCCCHHHHHHHH
Confidence            1457899988765 4444443 33222 22222111 01121110 0100000000011 123354 9999999999988


Q ss_pred             HHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 036458          239 ARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPS  286 (445)
Q Consensus       239 ~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~  286 (445)
                      ++     |++|++|++|.+|..    +   +     .+.+|+||++.+
T Consensus       202 ~~-----g~~i~l~~~V~~i~~----~---v-----~~~~D~VV~a~p  232 (367)
T 1i8t_A          202 LE-----GVDVKLGIDFLKDKD----S---L-----ASKAHRIIYTGP  232 (367)
T ss_dssp             HT-----TSEEECSCCGGGSHH----H---H-----HTTEEEEEECSC
T ss_pred             hc-----CCEEEeCCceeeech----h---h-----hccCCEEEEecc
Confidence            75     689999999999852    1   1     145899999865

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.45  E-value=1.9e-12  Score=139.81  Aligned_cols=74  Identities=18%  Similarity=0.187  Sum_probs=63.3

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec-
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA-   82 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~-   82 (445)
                      .+||+|||+|++||++|..|+++|++|+|+|+++++||++.|.+..                   .++.+|+|++++.. 
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~-------------------~G~~vd~Ga~~i~G~  396 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSF-------------------KGVTVGRGAQIVNGC  396 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECCS-------------------TTCCEESSCCEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeecccc-------------------CCeEeccCCeEEeCC
Confidence            5899999999999999999999999999999999999999987642                   46899999999864 


Q ss_pred             -CchhHHHhhhcccc
Q 036458           83 -NGGLVRILIHTDVT   96 (445)
Q Consensus        83 -~~~l~~~l~~~g~~   96 (445)
                       ..++..++.+.|+.
T Consensus       397 ~~np~~~l~~~lGl~  411 (776)
T 4gut_A          397 INNPVALMCEQLGIS  411 (776)
T ss_dssp             TTCHHHHHHHHHTCC
T ss_pred             ccChHHHHHHHhCCc
Confidence             34566667777764

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.45  E-value=1.1e-13  Score=146.86  Aligned_cols=80  Identities=10%  Similarity=0.019  Sum_probs=64.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCC--------CeEEEEecCC-CC----------------CCcccccchhhhhhhhcCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDG--------LKVLHMDRNA-YY----------------GGESTSLNLTQLWKRFKGD   58 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G--------~~VlvlE~n~-~~----------------GG~~~s~~~~~~~~~~~~~   58 (445)
                      .++|+|||||++||+||+.|+++|        ++|+|+|+++ ++                ||++.+....+..      
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~~~~~~g~~~~~~~g~~GGr~~t~~~~~~~------  129 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKAGRVSAALVHNGD------  129 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBGGGCC----CEECTTCEETTEEEEEECSSC------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCcccccccchhhHHHhcCcCCceEEEEEccCCc------
Confidence            478999999999999999999999        9999999999 99                9999998762100      


Q ss_pred             CCCCCccCCCCCeEEecccceeecC-chhHHHhhhc-ccc
Q 036458           59 DKPPERLGSSKEYNVDMIPKFMMAN-GGLVRILIHT-DVT   96 (445)
Q Consensus        59 ~~~~~~~~~~~~~~iDlgp~~l~~~-~~l~~~l~~~-g~~   96 (445)
                             ....++.+|+|++++... ..+++++.+. |+.
T Consensus       130 -------~~~~~~~~e~G~~~~~~~~~~~~~~~~~l~gl~  162 (721)
T 3ayj_A          130 -------PASGDTIYEVGAMRFPEIAGLTWHYASAAFGDA  162 (721)
T ss_dssp             -------GGGCSEEEECSCCCEETTCHHHHHHHHHHHCTT
T ss_pred             -------ccCCCcEEecCCEEecCccHHHHHHHHHhcCCc
Confidence                   001468999999998754 3556777777 775

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.43  E-value=2.8e-12  Score=136.89  Aligned_cols=73  Identities=16%  Similarity=0.291  Sum_probs=61.4

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA   82 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~   82 (445)
                      ..+||+|||+|++||++|..|+++|++|+|+|+++++||++.+++.                    .++.+|+|++++..
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~--------------------~~~~~~~G~~~~~~  165 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRK--------------------GNYVADLGAMVVTG  165 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEE--------------------TTEEEESSCCEECC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccc--------------------cCchhhcCcEEEeC
Confidence            3589999999999999999999999999999999999999999886                    46999999999864


Q ss_pred             C-c-hhHHHhhhccc
Q 036458           83 N-G-GLVRILIHTDV   95 (445)
Q Consensus        83 ~-~-~l~~~l~~~g~   95 (445)
                      . + .+..+..++++
T Consensus       166 ~~~~~~~~l~~~l~~  180 (662)
T 2z3y_A          166 LGGNPMAVVSKQVNM  180 (662)
T ss_dssp             SBTCHHHHHHHHHTC
T ss_pred             CCCchHHHHHHHhCc
Confidence            2 3 44444445664

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.42  E-value=1.6e-12  Score=141.32  Aligned_cols=73  Identities=16%  Similarity=0.291  Sum_probs=61.5

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA   82 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~   82 (445)
                      ..+||+|||+|++||+||+.|+++|++|+|||+++++||++.+++.                    .++.+|+|++++..
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~--------------------~~~~~~~G~~~~~~  336 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRK--------------------GNYVADLGAMVVTG  336 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEEE--------------------TTEEEESSCCEECC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCceeeecc--------------------cccchhcCceEecC
Confidence            3579999999999999999999999999999999999999999886                    46999999999875


Q ss_pred             C-c-hhHHHhhhccc
Q 036458           83 N-G-GLVRILIHTDV   95 (445)
Q Consensus        83 ~-~-~l~~~l~~~g~   95 (445)
                      . + .+..+..++++
T Consensus       337 ~~~~~~~~l~~~lg~  351 (852)
T 2xag_A          337 LGGNPMAVVSKQVNM  351 (852)
T ss_dssp             SBTCHHHHHHHHTTC
T ss_pred             CCCchHHHHHHHhCC
Confidence            2 2 44444445664

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.35  E-value=5.5e-12  Score=124.13  Aligned_cols=47  Identities=30%  Similarity=0.440  Sum_probs=40.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN   47 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~   47 (445)
                      |.+++||||||+|++|+++|+.|+++|++|+|+||++.+|+..+..+
T Consensus         1 M~~~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~~~~~~s~~~   47 (369)
T 3dme_A            1 MSTDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSSRN   47 (369)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSCSTTSSS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCccCcCC
Confidence            77789999999999999999999999999999999998887665543

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.32  E-value=1.7e-11  Score=120.18  Aligned_cols=44  Identities=20%  Similarity=0.331  Sum_probs=41.5

Q ss_pred             ccEEEECCChhHHHHHHHhhh---CCCeEEEEecCCCCCCcccccch
Q 036458            5 YDVIVLGTGLKECILSGVLSV---DGLKVLHMDRNAYYGGESTSLNL   48 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~---~G~~VlvlE~n~~~GG~~~s~~~   48 (445)
                      +||+|||||++||++|+.|++   +|++|+|+||++.+||++++.+.
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~   48 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACS   48 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEEC
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeec
Confidence            699999999999999999999   99999999999999999987654

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.30  E-value=2.9e-12  Score=119.09  Aligned_cols=62  Identities=21%  Similarity=0.314  Sum_probs=55.2

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN   83 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~   83 (445)
                      .+||+|||||++||+||..|+++|++|+||||++.+||++++.+.                    .++.+|+|.+++...
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~--------------------~~~~~d~g~~~~~~~   61 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRS--------------------DAGALDMGAQYFTAR   61 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEE--------------------TTEEEECSCCCBCCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccccccc--------------------CCceeecCccccccC
Confidence            389999999999999999999999999999999999999998777                    358899998877655


Q ss_pred             ch
Q 036458           84 GG   85 (445)
Q Consensus        84 ~~   85 (445)
                      ..
T Consensus        62 ~~   63 (336)
T 3kkj_A           62 DR   63 (336)
T ss_dssp             SH
T ss_pred             cH
Confidence            43

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.28  E-value=2.6e-11  Score=122.81  Aligned_cols=65  Identities=15%  Similarity=0.189  Sum_probs=52.9

Q ss_pred             eEEeCC-C---cchHHHHHHHHHHHcCcEEEeCC---cceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCCC
Q 036458          224 YIYPLY-G---LGELPQAFARLSAVYGGTYMLNK---PECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       224 ~~~p~g-G---~~~L~q~l~r~~~~~Gg~i~l~~---~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~p  289 (445)
                      +++|.. |   ...+.++|.+.++..|+++++++   +|++|..+ ++++++|.+ +|++++||.||.+.+.+.
T Consensus       149 ~~~~~~~g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~-~~~v~gV~t~~G~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          149 YFARSGAGWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFE-NNDVKGAVTADGKIWRAERTFLCAGASA  221 (438)
T ss_dssp             EEESSSCEEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEE-TTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred             EEeCCCCEEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEec-CCeEEEEEECCCCEEECCEEEECCCCCh
Confidence            345555 5   45788999999999999999999   99999984 777887875 677899999999877653

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.23  E-value=8e-11  Score=116.49  Aligned_cols=63  Identities=16%  Similarity=0.116  Sum_probs=50.6

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      ++|..|   ...+.++|.+.++..|++++++++|++|..+ +++ ++|++++.+++||.||.+.+.+.
T Consensus       144 ~~~~~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~-~~V~t~~g~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          144 YDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRV-DGA-WEVRCDAGSYRAAVLVNAAGAWC  209 (381)
T ss_dssp             EETTCEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEE-TTE-EEEECSSEEEEESEEEECCGGGH
T ss_pred             EcCCCceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEe-CCe-EEEEeCCCEEEcCEEEECCChhH
Confidence            455555   3578899999999999999999999999984 554 56776555899999999987663

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.14  E-value=6.3e-10  Score=119.10  Aligned_cols=63  Identities=17%  Similarity=0.065  Sum_probs=50.5

Q ss_pred             eEEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCC
Q 036458          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYL  288 (445)
Q Consensus       224 ~~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~  288 (445)
                      .++|.+|   ...+.+++.+.++..|++++++++|++|..+ ++++ .|.+ +|+++.||.||.+.+.+
T Consensus       406 ~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~v-~V~t~~G~~i~Ad~VVlAtG~~  472 (676)
T 3ps9_A          406 ITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRK-DDCW-LLNFAGDQQATHSVVVLANGHQ  472 (676)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCGGG
T ss_pred             EEecCCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEe-CCeE-EEEECCCCEEECCEEEECCCcc
Confidence            3466666   3578899999999999999999999999985 5554 5664 67889999999988765

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.14  E-value=4.6e-10  Score=111.33  Aligned_cols=64  Identities=20%  Similarity=0.176  Sum_probs=51.1

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      ++|..|   ...+.+++.+.++..|++++++++|++|..+ ++++.+|++++.+++||.||.+.+.+.
T Consensus       139 ~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~~g~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          139 WNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIE-NNEIKGVKTNKGIIKTGIVVNATNAWA  205 (382)
T ss_dssp             EETTCCEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTEEEECSEEEECCGGGH
T ss_pred             EcCCCeeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEE-CCEEEEEEECCcEEECCEEEECcchhH
Confidence            344444   3578888989888999999999999999984 677777776555899999999987663

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.12  E-value=1.5e-09  Score=116.41  Aligned_cols=64  Identities=17%  Similarity=0.148  Sum_probs=49.5

Q ss_pred             eEEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCe-EEEcCEEEECCCCCC
Q 036458          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGE-TAKCKKVVCDPSYLP  289 (445)
Q Consensus       224 ~~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~-~~~ad~VI~~~~~~p  289 (445)
                      .++|.+|   ...+.+++.+.++..|++++++++|++|..+ ++++ .|.+ +|+ +++||.||.+.+.+.
T Consensus       401 ~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~v-~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          401 IHYPAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRI-DSQW-QLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEC-SSSE-EEEEC-CCCCEEESEEEECCGGGT
T ss_pred             EEecCCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEe-CCeE-EEEeCCCcEEEECCEEEECCCcch
Confidence            3456666   3578899999999999999999999999985 5554 4554 666 899999999877653

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.12  E-value=8.4e-10  Score=111.19  Aligned_cols=63  Identities=13%  Similarity=0.041  Sum_probs=50.1

Q ss_pred             eEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 036458          224 YIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL  288 (445)
Q Consensus       224 ~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~  288 (445)
                      ..||.....++.+.+.+.++..|++++++++|++|..+ ++. +.|.+++.+++||.||.+.+.+
T Consensus       124 ~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~g~i~ad~VIlAtG~~  186 (417)
T 3v76_A          124 QLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERT-ASG-FRVTTSAGTVDAASLVVASGGK  186 (417)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEE-TTE-EEEEETTEEEEESEEEECCCCS
T ss_pred             EEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCE-EEEEECCcEEEeeEEEECCCCc
Confidence            35676667789999999999999999999999999874 443 4566555589999999987654

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.10  E-value=1.3e-09  Score=119.46  Aligned_cols=64  Identities=20%  Similarity=0.219  Sum_probs=52.1

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      ++|..|   ...+.++|.+.++..|++++++++|++|..+ ++++++|.+++.+++||.||.+.+.+.
T Consensus       141 ~~~~~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~-~~~v~~V~t~~G~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          141 HVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTADGVIPADIVVSCAGFWG  207 (830)
T ss_dssp             EETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTEEEECSEEEECCGGGH
T ss_pred             EECCCceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEe-CCEEEEEEECCcEEECCEEEECCccch
Confidence            455555   2378899999999999999999999999884 667777877666899999999987663

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.10  E-value=2e-09  Score=107.38  Aligned_cols=65  Identities=25%  Similarity=0.184  Sum_probs=51.8

Q ss_pred             eEEeCCCcc---hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          224 YIYPLYGLG---ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       224 ~~~p~gG~~---~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      .++|..|.-   .+.+++.+.++..|++++++++|++|..+ ++++++|.+++.+++||.||.+.+.+.
T Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          163 TWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKD-GEKVTGVKTTRGTIHAGKVALAGAGHS  230 (405)
T ss_dssp             EEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTCCEEEEEEEECCGGGH
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEe-CCEEEEEEeCCceEECCEEEECCchhH
Confidence            345666643   78888999898999999999999999984 667777776444799999999887653

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.02  E-value=6.2e-09  Score=107.67  Aligned_cols=57  Identities=16%  Similarity=0.248  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe--CCe--EEEcC-EEEECCCCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS--EGE--TAKCK-KVVCDPSYLP  289 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~--~g~--~~~ad-~VI~~~~~~p  289 (445)
                      .+.+.|.+.++..|++++++++|++|..++++++++|..  +++  +++|+ .||.+.+-+.
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            799999999999999999999999999854788988863  453  58995 8998876653

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.01  E-value=5e-09  Score=104.49  Aligned_cols=62  Identities=23%  Similarity=0.161  Sum_probs=47.8

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 036458          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL  288 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~  288 (445)
                      +.|..|   ...+.++|.+.++..|++++++++|++|..+ ++.+. |.+++.+++||.||.+.+.+
T Consensus       143 ~~~~~g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~-v~t~~g~i~a~~VV~A~G~~  207 (397)
T 2oln_A          143 LQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPD-ADGVS-VTTDRGTYRAGKVVLACGPY  207 (397)
T ss_dssp             EETTCEEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE-TTEEE-EEESSCEEEEEEEEECCGGG
T ss_pred             EcCCCCEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEc-CCeEE-EEECCCEEEcCEEEEcCCcC
Confidence            445555   2467888988888899999999999999874 44443 55555689999999988766

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.97  E-value=3.2e-09  Score=111.03  Aligned_cols=65  Identities=25%  Similarity=0.247  Sum_probs=51.0

Q ss_pred             eEEeCCC--cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CC--eEEEcCEEEECCCCCC
Q 036458          224 YIYPLYG--LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EG--ETAKCKKVVCDPSYLP  289 (445)
Q Consensus       224 ~~~p~gG--~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g--~~~~ad~VI~~~~~~p  289 (445)
                      +.|+.+-  ...+..++.+.++..|++++++++|++|..+ ++++++|+.    +|  .+++||.||.+.+.+.
T Consensus       160 ~~~~dg~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~-~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          160 GIYVEYRTDDARLTLEIMKEAVARGAVALNYMKVESFIYD-QGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             EEecCceEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            3455332  3578899999999999999999999999984 777777763    23  4799999999988764

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.96  E-value=3.6e-09  Score=104.38  Aligned_cols=61  Identities=16%  Similarity=0.176  Sum_probs=46.7

Q ss_pred             EeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 036458          226 YPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYL  288 (445)
Q Consensus       226 ~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~  288 (445)
                      .|..|   ...+.+++.+.++..|++++.+++|++|..+ ++.+ .|.+++.+++||.||.+.+.+
T Consensus       140 ~~~~g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~g~~~a~~vV~a~G~~  203 (372)
T 2uzz_A          140 ETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHD-DDGV-TIETADGEYQAKKAIVCAGTW  203 (372)
T ss_dssp             ESSCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSSE-EEEESSCEEEEEEEEECCGGG
T ss_pred             eCCCcEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEc-CCEE-EEEECCCeEEcCEEEEcCCcc
Confidence            44544   3478888989888999999999999999884 4444 455544469999999987765

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.94  E-value=1.2e-08  Score=102.10  Aligned_cols=64  Identities=14%  Similarity=0.217  Sum_probs=48.6

Q ss_pred             EEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcC---CCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          225 IYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDG---DGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       225 ~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~---~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      .||.....++.+.+.+.++..|++++++++|++|..++   ++. +.|.+++.+++||.||.+.+..+
T Consensus       102 ~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          102 LFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNSTQWQCKNLIVATGGLS  168 (401)
T ss_dssp             EEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTEEEEESEEEECCCCSS
T ss_pred             EccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCCEEECCEEEECCCCcc
Confidence            45654456788888888888999999999999998741   344 45666555899999999876554

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.93  E-value=1.5e-08  Score=103.05  Aligned_cols=64  Identities=19%  Similarity=0.259  Sum_probs=51.5

Q ss_pred             EEeCCC-cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCCC
Q 036458          225 IYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       225 ~~p~gG-~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~p  289 (445)
                      .+|..+ ...+.++|.+.++..|++++++++|++|..+ ++++++|.+ +|++++||.||.+.+.++
T Consensus       126 ~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~-~~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          126 MFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             EEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             EECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEec-CCcEEEEEECCCCEEECCEEEECCCCCc
Confidence            466544 5678899999998899999999999999874 667677775 666799999999876553

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.92  E-value=5.4e-09  Score=103.46  Aligned_cols=64  Identities=13%  Similarity=0.072  Sum_probs=50.5

Q ss_pred             eEEeCCCc---chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          224 YIYPLYGL---GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       224 ~~~p~gG~---~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      .++|..|.   .++.+++.+.++..|++++++++|++|..+ ++++ +|.++++++.||.||.+.+.+.
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~g~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          153 SFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPSGDVWANHVVVASGVWS  219 (382)
T ss_dssp             EEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETTEEEEEEEEEECCGGGT
T ss_pred             EEeCCCeEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCCceEEcCEEEECCChhH
Confidence            34566663   568899999999999999999999999874 5555 6666555899999999887654

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.90  E-value=9.2e-08  Score=100.24  Aligned_cols=58  Identities=16%  Similarity=0.086  Sum_probs=47.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe---CCe--EEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS---EGE--TAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~---~g~--~~~ad~VI~~~~~~p  289 (445)
                      .++.+.|.+.++..|++++++++|++|..++++++++|..   +|+  ++.||.||.+.+.+.
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            4788999999989999999999999999853378887752   575  689999999876653

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.87  E-value=8.1e-09  Score=102.39  Aligned_cols=56  Identities=9%  Similarity=0.152  Sum_probs=45.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      ..+.+++.+.++..|++++++++|++|..+ ++.+ .|.+++.+++||.||.+.+.+.
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~~-~v~~~~g~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDIS-PDSV-KIETANGSYTADKLIVSMGAWN  205 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSCE-EEEETTEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEec-CCeE-EEEeCCCEEEeCEEEEecCccH
Confidence            578889999999999999999999999884 4443 4566666899999999987663

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.87  E-value=1.3e-08  Score=102.15  Aligned_cols=40  Identities=23%  Similarity=0.483  Sum_probs=34.5

Q ss_pred             CCC-cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            1 MDE-DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         1 m~~-~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      |.+ ++||+|||||++||++|+.|+++|++|+|+|+++.++
T Consensus         1 M~~~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~   41 (421)
T 3nix_A            1 MQREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPR   41 (421)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC
T ss_pred             CCCccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            544 4999999999999999999999999999999997553

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.87  E-value=8.2e-08  Score=100.53  Aligned_cols=63  Identities=21%  Similarity=0.161  Sum_probs=50.0

Q ss_pred             EeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCC-CcEEEEEe---CCe--EEEcCEEEECCCCCC
Q 036458          226 YPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGD-GKVIGVTS---EGE--TAKCKKVVCDPSYLP  289 (445)
Q Consensus       226 ~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~-g~~~~v~~---~g~--~~~ad~VI~~~~~~p  289 (445)
                      +|..|   ..++.+.|.+.++..|++++++++|++|..+ + +++++|..   +|+  ++.||.||.+.+.+.
T Consensus       241 ~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s  312 (566)
T 1qo8_A          241 RPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVN-DDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  312 (566)
T ss_dssp             ECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEEC-TTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             ecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEC-CCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence            45544   3468899999999999999999999999985 5 88887763   565  689999999876553

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.86  E-value=1.7e-08  Score=102.29  Aligned_cols=64  Identities=13%  Similarity=0.172  Sum_probs=49.1

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEc--------------CCCcEEEEEeCCeEE--EcCEEEECC
Q 036458          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFD--------------GDGKVIGVTSEGETA--KCKKVVCDP  285 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~--------------~~g~~~~v~~~g~~~--~ad~VI~~~  285 (445)
                      ++|..|   ...+.++|.+.++..|++++.+++|++|..+              +++++++|.+++.++  .||.||.+.
T Consensus       171 ~~~~~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g~i~~~Ad~VV~At  250 (448)
T 3axb_A          171 LIRSAGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDGTRVEVGEKLVVAA  250 (448)
T ss_dssp             EESSEEECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTSCEEEEEEEEEECC
T ss_pred             EeCCCeEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCCEEeecCCEEEECC
Confidence            344444   3478899999999999999999999999871              245566777644478  999999998


Q ss_pred             CCC
Q 036458          286 SYL  288 (445)
Q Consensus       286 ~~~  288 (445)
                      +.+
T Consensus       251 G~~  253 (448)
T 3axb_A          251 GVW  253 (448)
T ss_dssp             GGG
T ss_pred             CcC
Confidence            765

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.83  E-value=1.8e-08  Score=105.64  Aligned_cols=57  Identities=16%  Similarity=0.180  Sum_probs=46.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~~~p  289 (445)
                      ..+..++.+.++..|++++.+++|++|..+ ++++++|..    +|+  +++||.||.+.+.+.
T Consensus       188 ~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~-~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          188 ARLVIDNIKKAAEDGAYLVSKMKAVGFLYE-GDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCeEEeccEEEEEEEe-CCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence            367788888888999999999999999984 667777762    343  799999999988763

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.82  E-value=1.1e-08  Score=106.20  Aligned_cols=57  Identities=21%  Similarity=0.271  Sum_probs=47.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~p  289 (445)
                      ..+.+.+.+.++..|++++++++|++|.. +++++.+|.. +|+++.||.||.+.+..+
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~-~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHM-EDGQITGVTLSNGEEIKSRHVVLAVGHSA  277 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEE-SSSBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEE-eCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence            45667777778888999999999999998 4677887775 678899999999988776

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.80  E-value=2.1e-09  Score=106.44  Aligned_cols=41  Identities=29%  Similarity=0.485  Sum_probs=37.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      |+ +|||+|||||++||+||..|+++|++|+|+||++.+|..
T Consensus         2 Me-~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~   42 (397)
T 3oz2_A            2 ME-TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSP   42 (397)
T ss_dssp             EE-EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCS
T ss_pred             CC-CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCC
Confidence            55 599999999999999999999999999999999888753

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.71  E-value=1.2e-07  Score=94.49  Aligned_cols=56  Identities=14%  Similarity=0.090  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHHHc-CcEEEeCCcceeEEEcCCCcEE-EEE-eCCeEEEcCEEEECCCCCC
Q 036458          233 ELPQAFARLSAVY-GGTYMLNKPECKVEFDGDGKVI-GVT-SEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       233 ~L~q~l~r~~~~~-Gg~i~l~~~V~~I~~~~~g~~~-~v~-~~g~~~~ad~VI~~~~~~p  289 (445)
                      .+.+.|.+.++.. |++++++++|++|..+ ++.++ .|+ .+|++++||.||.+.+..+
T Consensus       108 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~g~v~~~~g~~~~ad~vV~AdG~~s  166 (399)
T 2x3n_A          108 SLRRLVLEKIDGEATVEMLFETRIEAVQRD-ERHAIDQVRLNDGRVLRPRVVVGADGIAS  166 (399)
T ss_dssp             HHHHHHHHHHTTCTTEEEECSCCEEEEEEC-TTSCEEEEEETTSCEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHhhhcCCcEEEcCCEEEEEEEc-CCceEEEEEECCCCEEECCEEEECCCCCh
Confidence            4455666667776 8999999999999885 44442 344 4777899999999887654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.71  E-value=4.4e-08  Score=98.47  Aligned_cols=59  Identities=17%  Similarity=0.125  Sum_probs=50.0

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCCCc
Q 036458          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~p~  290 (445)
                      ..++.+.+.+.++..|++++++++|++|.. +++++.+|.. +|+++.||.||.+.++.|.
T Consensus       193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~  252 (415)
T 3lxd_A          193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVRMQDGSVIPADIVIVGIGIVPC  252 (415)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEE-SSSBEEEEEESSSCEEECSEEEECSCCEES
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEe-cCCcEEEEEeCCCCEEEcCEEEECCCCccC
Confidence            456778888888999999999999999987 4677777774 7889999999999987764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.68  E-value=1.2e-08  Score=98.29  Aligned_cols=44  Identities=27%  Similarity=0.480  Sum_probs=38.1

Q ss_pred             CCC-cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            1 MDE-DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         1 m~~-~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      |.+ +|||+|||+|.+|++||..|++.|++|+++|++ .+||.+..
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~~   46 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMAN   46 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeeec
Confidence            665 799999999999999999999999999999985 68887753

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.67  E-value=1.1e-08  Score=99.39  Aligned_cols=42  Identities=29%  Similarity=0.315  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHhhh--CCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSV--DGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~--~G~~VlvlE~n~~~GG~~~   44 (445)
                      .++||+|||+|++||+||.+|++  .|++|+|+||++++||.+.
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~  107 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEE
Confidence            36899999999999999999974  5999999999999999875

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.65  E-value=1.5e-08  Score=97.27  Aligned_cols=38  Identities=21%  Similarity=0.229  Sum_probs=35.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      |++.|||+|||+|++|++||..|++.|++|+++|++..
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~   38 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA   38 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            88899999999999999999999999999999999864

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.53  E-value=3.3e-08  Score=100.95  Aligned_cols=45  Identities=29%  Similarity=0.330  Sum_probs=41.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      |..+|||+|||+|.+|++||..|++.|++|+++||++.+||.|..
T Consensus         1 M~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~   45 (466)
T 3l8k_A            1 MSLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLY   45 (466)
T ss_dssp             -CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHH
T ss_pred             CCccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccc
Confidence            777899999999999999999999999999999999999998764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.53  E-value=7e-07  Score=89.30  Aligned_cols=59  Identities=20%  Similarity=0.311  Sum_probs=49.6

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCCCc
Q 036458          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~p~  290 (445)
                      ..++.+.+.+.++..|++++++++|++|..+ ++++.+|.. +|+++.||.||++.++.|.
T Consensus       183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~  242 (404)
T 3fg2_P          183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAE-GDRVTGVVLSDGNTLPCDLVVVGVGVIPN  242 (404)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTSCEEECSEEEECCCEEEC
T ss_pred             CHHHHHHHHHHHHhCCcEEEECCEEEEEEec-CCcEEEEEeCCCCEEEcCEEEECcCCccC
Confidence            4577888888889999999999999999874 667777774 7889999999999887654

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.52  E-value=3.2e-07  Score=93.21  Aligned_cols=56  Identities=7%  Similarity=0.106  Sum_probs=45.3

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      .++.+.+.+.++..|.+++++++|++|.. +++++ .|..+++++.||.||.+.+..|
T Consensus       189 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v-~v~~~~g~i~aD~Vv~A~G~~p  244 (452)
T 3oc4_A          189 KEMVAEVQKSLEKQAVIFHFEETVLGIEE-TANGI-VLETSEQEISCDSGIFALNLHP  244 (452)
T ss_dssp             HHHHHHHHHHHHTTTEEEEETCCEEEEEE-CSSCE-EEEESSCEEEESEEEECSCCBC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEc-cCCeE-EEEECCCEEEeCEEEECcCCCC
Confidence            46778888888899999999999999987 35565 5665545899999999887665

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.51  E-value=5.8e-08  Score=93.18  Aligned_cols=40  Identities=23%  Similarity=0.191  Sum_probs=35.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      ++|||+|||+|++||+||.+|+|+|++|+++|++. +||..
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg~~   44 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRNRV   44 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGGGG
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCee
Confidence            36999999999999999999999999999999975 56643

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.47  E-value=7.4e-08  Score=94.62  Aligned_cols=45  Identities=11%  Similarity=0.213  Sum_probs=40.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      |...+||+|||+|++|+++|..|++.|++|+++|+++.+||.+..
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   55 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAA   55 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccc
Confidence            455799999999999999999999999999999999999998753

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.46  E-value=1.3e-07  Score=93.00  Aligned_cols=41  Identities=24%  Similarity=0.279  Sum_probs=37.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      |..++||+|||+|++|+++|+.|+++|++|+|+||+...+|
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g   43 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence            67789999999999999999999999999999999985444

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.46  E-value=8.4e-08  Score=93.04  Aligned_cols=45  Identities=22%  Similarity=0.331  Sum_probs=40.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      |..++||+|||+|++|+++|..|++.|++|+++|+++.+||.+..
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   46 (335)
T 2zbw_A            2 AADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTA   46 (335)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHH
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeec
Confidence            445799999999999999999999999999999999999998753

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.45  E-value=6.4e-07  Score=91.50  Aligned_cols=58  Identities=17%  Similarity=0.122  Sum_probs=47.9

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      -.++.+.+.+.++..|.+++++++|++|.. +++++..+..+|+++.||.||.+.+..|
T Consensus       201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~v~~~~g~~i~aD~Vv~a~G~~p  258 (472)
T 3iwa_A          201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEG-ENGKVARVITDKRTLDADLVILAAGVSP  258 (472)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEEEEEESSCEEECSEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHhcCCEEEeCCEEEEEEc-cCCeEEEEEeCCCEEEcCEEEECCCCCc
Confidence            456788888888999999999999999987 4666654456888999999999988765

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.43  E-value=1.1e-07  Score=97.87  Aligned_cols=43  Identities=28%  Similarity=0.489  Sum_probs=39.2

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      .+|||+|||||.+|++||..|++.|++|+++|+++.+||.|..
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~   66 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLN   66 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc
Confidence            4599999999999999999999999999999999999998654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.43  E-value=1.4e-07  Score=90.84  Aligned_cols=44  Identities=25%  Similarity=0.463  Sum_probs=39.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      |+.++||+|||+|++|+++|..|++.|++|+++|+ ..+||.+..
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~   56 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAE   56 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGG
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccc
Confidence            56679999999999999999999999999999999 578887653

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.42  E-value=1.5e-07  Score=94.22  Aligned_cols=41  Identities=20%  Similarity=0.310  Sum_probs=36.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCe-EEEEecCCCCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLK-VLHMDRNAYYGG   41 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~n~~~GG   41 (445)
                      |.+++||+|||||++||++|..|+++|.+ |+|+||++.++.
T Consensus         1 M~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~   42 (410)
T 3c96_A            1 MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRP   42 (410)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCC
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCccc
Confidence            66789999999999999999999999999 999999988764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.41  E-value=1.4e-07  Score=91.20  Aligned_cols=45  Identities=18%  Similarity=0.227  Sum_probs=40.0

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEec----CCCCCCccccc
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDR----NAYYGGESTSL   46 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~----n~~~GG~~~s~   46 (445)
                      +..+||+|||+|++||++|..|+++|++|+++|+    +..+||.+...
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~   68 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTT   68 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccc
Confidence            4568999999999999999999999999999999    55899987653

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.39  E-value=1.4e-07  Score=96.76  Aligned_cols=57  Identities=16%  Similarity=0.166  Sum_probs=45.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      .++.+.+.+.++..|.+++++++|++|..+ ++++.....+|+++.||.||.+.+..|
T Consensus       232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~-~~~v~v~~~~g~~i~aD~Vi~A~G~~p  288 (484)
T 3o0h_A          232 YDLRQLLNDAMVAKGISIIYEATVSQVQST-ENCYNVVLTNGQTICADRVMLATGRVP  288 (484)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEEC-SSSEEEEETTSCEEEESEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEee-CCEEEEEECCCcEEEcCEEEEeeCCCc
Confidence            357788888888899999999999999874 555533335788899999999887654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.39  E-value=1.4e-07  Score=96.19  Aligned_cols=43  Identities=30%  Similarity=0.457  Sum_probs=38.4

Q ss_pred             CCC-cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            1 MDE-DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         1 m~~-~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |.+ +|||+|||+|++|+++|..|++.|++|+++|+ +.+||.|.
T Consensus         1 M~~~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~   44 (463)
T 4dna_A            1 MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCV   44 (463)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHH
T ss_pred             CCCCCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCccc
Confidence            553 79999999999999999999999999999999 78999765

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.39  E-value=2.2e-07  Score=88.42  Aligned_cols=41  Identities=22%  Similarity=0.357  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHHhhhC-CCeEEEEecCCCCCCcc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVD-GLKVLHMDRNAYYGGES   43 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~n~~~GG~~   43 (445)
                      .++||+|||+|++||++|..|++. |.+|+|+|+++.+||.+
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~   79 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   79 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCce
Confidence            358999999999999999999997 99999999999998753

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.38  E-value=2.3e-07  Score=89.07  Aligned_cols=40  Identities=28%  Similarity=0.310  Sum_probs=37.8

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      ++||+|||+|++||++|..|+++|++|+++|++  +||.+..
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~   54 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTE   54 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGG
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecc
Confidence            589999999999999999999999999999999  9998765

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.38  E-value=2.7e-07  Score=93.64  Aligned_cols=44  Identities=16%  Similarity=0.221  Sum_probs=40.8

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCC--eEEEEecCCCCCCcccc
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNAYYGGESTS   45 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~~~GG~~~s   45 (445)
                      ...+||+|||||++||++|..|++.|.  +|+++|+++.+||.|..
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~   49 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   49 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecC
Confidence            457999999999999999999999999  99999999999997754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.37  E-value=2.2e-07  Score=89.76  Aligned_cols=43  Identities=23%  Similarity=0.373  Sum_probs=39.2

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      ...+||+|||+|++|+++|..|++.|++|+++|++ .+||.+..
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   48 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAW   48 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccc
Confidence            34689999999999999999999999999999999 78998764

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.37  E-value=2.1e-07  Score=90.63  Aligned_cols=44  Identities=32%  Similarity=0.410  Sum_probs=40.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      |+ ++||+|||+|++||++|..|++.|++|+++|+++.+||.|..
T Consensus         1 m~-~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~   44 (357)
T 4a9w_A            1 MD-SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH   44 (357)
T ss_dssp             CE-EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG
T ss_pred             CC-cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC
Confidence            44 589999999999999999999999999999999999998764

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.37  E-value=1.2e-07  Score=97.02  Aligned_cols=45  Identities=16%  Similarity=0.342  Sum_probs=41.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      |..+|||+|||+|++|+++|..|++.|++|+++|+++.+||.|..
T Consensus         2 M~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   46 (478)
T 1v59_A            2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN   46 (478)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccce
Confidence            666799999999999999999999999999999999999997643

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.37  E-value=1.4e-07  Score=96.72  Aligned_cols=44  Identities=34%  Similarity=0.474  Sum_probs=41.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |+.+|||+|||+|.+|+++|..|++.|++|+++|+++.+||.+.
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   46 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCcee
Confidence            67789999999999999999999999999999999999999764

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.35  E-value=2.7e-07  Score=92.25  Aligned_cols=38  Identities=16%  Similarity=0.178  Sum_probs=34.5

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      +++||+|||||++||++|..|+++|++|+|+||++.++
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~   59 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIK   59 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            46999999999999999999999999999999998664

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.35  E-value=3e-07  Score=95.24  Aligned_cols=44  Identities=30%  Similarity=0.434  Sum_probs=40.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |..++||+|||||.+|++||..|++.|++|+++|+++++||.|.
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   83 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   83 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccc
Confidence            45679999999999999999999999999999999999999875

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.34  E-value=3.8e-07  Score=90.95  Aligned_cols=40  Identities=20%  Similarity=0.351  Sum_probs=36.9

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      +++||+|||||++||++|..|+++|.+|+|+||++.++++
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~   64 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR   64 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCcccc
Confidence            5689999999999999999999999999999999887653

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.33  E-value=5.5e-07  Score=92.74  Aligned_cols=41  Identities=32%  Similarity=0.501  Sum_probs=36.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      |..++||+|||||++||++|..|+++|.+|+|+||++.++.
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~   48 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTG   48 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CC
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            45689999999999999999999999999999999987653

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.33  E-value=2.4e-07  Score=89.36  Aligned_cols=41  Identities=17%  Similarity=0.225  Sum_probs=39.3

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      .+||+|||+|++||++|..|++.|++|+++|+++.+||.+.
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~   47 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLS   47 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeh
Confidence            48999999999999999999999999999999999999885

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.32  E-value=3.6e-07  Score=88.84  Aligned_cols=40  Identities=23%  Similarity=0.349  Sum_probs=37.5

Q ss_pred             cccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCCcc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGGES   43 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG~~   43 (445)
                      +|||+|||+|++||++|+.|+++  |++|+++|+++.+||.+
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~  120 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA  120 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCcc
Confidence            58999999999999999999997  99999999999998754

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.32  E-value=3.6e-07  Score=93.47  Aligned_cols=57  Identities=11%  Similarity=0.137  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCC---eEEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEG---ETAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g---~~~~ad~VI~~~~~~p  289 (445)
                      .++.+.+.+.++..|.+++++++|++|..+ ++.+.....++   +++.+|.||.+.+..|
T Consensus       221 ~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~-~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p  280 (476)
T 3lad_A          221 EQVAKEAQKILTKQGLKILLGARVTGTEVK-NKQVTVKFVDAEGEKSQAFDKLIVAVGRRP  280 (476)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCEEEEEEEC-SSCEEEEEESSSEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEEc-CCEEEEEEEeCCCcEEEECCEEEEeeCCcc
Confidence            457778888888999999999999999874 44444333433   6799999999877554

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.32  E-value=1.8e-07  Score=95.08  Aligned_cols=39  Identities=31%  Similarity=0.531  Sum_probs=36.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      |+.++||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         3 m~~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~   41 (453)
T 3atr_A            3 KELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN   41 (453)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            455799999999999999999999999999999999865

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.32  E-value=3.2e-07  Score=93.61  Aligned_cols=57  Identities=14%  Similarity=0.161  Sum_probs=45.8

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~  290 (445)
                      .++.+.+.+.++..|.+++++++|++|..+ ++ ...+..+++++.||.||.+.+..|.
T Consensus       216 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~-~~~v~~~~~~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          216 PAIGEAVTAAFRAEGIEVLEHTQASQVAHM-DG-EFVLTTTHGELRADKLLVATGRTPN  272 (467)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEEE-TT-EEEEEETTEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CC-EEEEEECCcEEEcCEEEECCCCCcC
Confidence            367788888889999999999999999863 43 3456667788999999998876653

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.32  E-value=4.1e-07  Score=93.75  Aligned_cols=57  Identities=14%  Similarity=0.115  Sum_probs=46.4

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCCCCC
Q 036458          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPSYLP  289 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~~~p  289 (445)
                      -..+..++.+.++..|++++++++|++|..+ + ++++|.+    +|+  +++||.||.+.+.+.
T Consensus       148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~-~-~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          148 DARLVLANAQMVVRKGGEVLTRTRATSARRE-N-GLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSEEEEEEEEE-T-TEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-C-CEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            3468889999999999999999999999884 4 5666664    565  799999999988764

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.31  E-value=2.8e-07  Score=93.97  Aligned_cols=43  Identities=21%  Similarity=0.396  Sum_probs=39.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |..+|||+|||+|.+|+++|..|++.|++|+++|++ .+||.|.
T Consensus         1 M~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   43 (463)
T 2r9z_A            1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCV   43 (463)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             CCccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCc
Confidence            777899999999999999999999999999999998 7899875

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.29  E-value=3.8e-07  Score=94.44  Aligned_cols=45  Identities=27%  Similarity=0.383  Sum_probs=40.2

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC--------CCCCccccc
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA--------YYGGESTSL   46 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~--------~~GG~~~s~   46 (445)
                      ..+|||+|||+|.+|++||..|++.|++|+++|+++        .+||.|...
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~   82 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNV   82 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCc
Confidence            357999999999999999999999999999999975        899987543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.28  E-value=3.2e-07  Score=93.16  Aligned_cols=43  Identities=23%  Similarity=0.347  Sum_probs=38.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |..+|||+|||+|.+|++||..|++.|++|+++|++ .+||.|.
T Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   43 (450)
T 1ges_A            1 MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV   43 (450)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCccc
Confidence            777899999999999999999999999999999998 7899875

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.27  E-value=5.2e-07  Score=92.03  Aligned_cols=44  Identities=18%  Similarity=0.370  Sum_probs=40.8

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      +++|||+|||+|++|++||..|++.|++|+++|+++.+||.|..
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~   47 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLN   47 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccC
Confidence            45799999999999999999999999999999999999998753

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.27  E-value=6.5e-07  Score=88.58  Aligned_cols=38  Identities=16%  Similarity=0.153  Sum_probs=36.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      .+||+|||||++||++|..|+++|++|+|+|+++.+++
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~   48 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRA   48 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCC
Confidence            58999999999999999999999999999999998865

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.26  E-value=4.3e-07  Score=86.86  Aligned_cols=43  Identities=26%  Similarity=0.336  Sum_probs=39.1

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEE-EecCCCCCCcccc
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLH-MDRNAYYGGESTS   45 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~Vlv-lE~n~~~GG~~~s   45 (445)
                      +..+||+|||+|++||+||..|+++|++|++ +|| +.+||.+..
T Consensus         2 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~   45 (315)
T 3r9u_A            2 NAMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITS   45 (315)
T ss_dssp             CSCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGG
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeee
Confidence            3568999999999999999999999999999 999 788998754

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.26  E-value=5.6e-07  Score=86.99  Aligned_cols=41  Identities=29%  Similarity=0.374  Sum_probs=37.9

Q ss_pred             CcccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCCcc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGGES   43 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG~~   43 (445)
                      .++||+|||+|++||++|..|+++  |++|+++|+++.+||..
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~  106 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS  106 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccc
Confidence            357999999999999999999999  99999999999999754

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.26  E-value=5.8e-07  Score=94.97  Aligned_cols=44  Identities=32%  Similarity=0.485  Sum_probs=38.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |..+|||||||+|++|+++|..|+++|++|+++|+.+..||.+.
T Consensus        43 ~~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~~   86 (623)
T 3pl8_A           43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKI   86 (623)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSST
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCccc
Confidence            45679999999999999999999999999999999999998553

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.26  E-value=3.8e-07  Score=93.79  Aligned_cols=43  Identities=26%  Similarity=0.319  Sum_probs=38.7

Q ss_pred             CCC-cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            1 MDE-DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         1 m~~-~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |.+ +|||+|||+|.+|++||..|++.|++|+++|++. +||.|.
T Consensus         4 M~~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~   47 (492)
T 3ic9_A            4 MKVINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCA   47 (492)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHH
T ss_pred             CccCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCccc
Confidence            443 5999999999999999999999999999999975 999874

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.25  E-value=5.4e-07  Score=93.79  Aligned_cols=42  Identities=26%  Similarity=0.273  Sum_probs=39.7

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      .++||+|||||++|+++|..|+++|++|+++|+++.+||.|.
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~   56 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY   56 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            468999999999999999999999999999999999999875

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.25  E-value=4.9e-07  Score=92.28  Aligned_cols=42  Identities=26%  Similarity=0.419  Sum_probs=39.6

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      +|||+|||+|++|++||..|++.|++|+++|+++++||.|..
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   43 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLN   43 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCC
Confidence            589999999999999999999999999999999999998753

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.24  E-value=4.7e-07  Score=88.87  Aligned_cols=44  Identities=18%  Similarity=0.290  Sum_probs=39.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCCCCCccccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAYYGGESTSL   46 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~~GG~~~s~   46 (445)
                      |. ++||+|||||++|+++|..|++.|+ +|+++|+++ +||.+..+
T Consensus         2 m~-~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~   46 (369)
T 3d1c_A            2 MQ-HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHW   46 (369)
T ss_dssp             CC-EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTS
T ss_pred             Cc-cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccC
Confidence            54 6899999999999999999999999 999999999 99976543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.24  E-value=8.6e-07  Score=93.06  Aligned_cols=56  Identities=18%  Similarity=0.115  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe--CC--eEEEcCEEEECCCCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS--EG--ETAKCKKVVCDPSYLP  289 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~--~g--~~~~ad~VI~~~~~~p  289 (445)
                      .+.+.|.+.++..|++++.+++|++|..+ ++..++|+.  +|  .++.||.||.+.+...
T Consensus       129 ~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          129 EFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence            55666777778889999999999999874 555566653  66  5799999999887653

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.24  E-value=4.5e-07  Score=92.77  Aligned_cols=42  Identities=19%  Similarity=0.311  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      .+|||+|||+|.+|++||..|++.|++|+++|++ .+||.|..
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~   60 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVN   60 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccc
Confidence            4699999999999999999999999999999976 78998743

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.24  E-value=4e-07  Score=93.70  Aligned_cols=57  Identities=23%  Similarity=0.316  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p~  290 (445)
                      ++.+.+.+.++..|.+++++++|++|..++++.+ .|. .+|+++.||.||++.+..|.
T Consensus       236 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-~v~~~~G~~i~~D~vv~a~G~~p~  293 (495)
T 2wpf_A          236 TIREEVTKQLTANGIEIMTNENPAKVSLNTDGSK-HVTFESGKTLDVDVVMMAIGRIPR  293 (495)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCE-EEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceE-EEEECCCcEEEcCEEEECCCCccc
Confidence            5677888888899999999999999987433333 444 57888999999999876653

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.22  E-value=6.1e-07  Score=89.74  Aligned_cols=56  Identities=14%  Similarity=0.144  Sum_probs=41.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcce---------eEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPEC---------KVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~---------~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      ..+.++|.+.++..|++++++++|+         +|..+ ++++ +|.+++.+++||.||.+.+.+.
T Consensus       172 ~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~-~~~v-~v~~~~g~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          172 GSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT-NTHQ-IVVHETRQIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee-CCeE-EEEECCcEEECCEEEECCCccH
Confidence            5688889998888999999999999         88763 5555 6666555899999999987663

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.22  E-value=9.8e-07  Score=87.90  Aligned_cols=39  Identities=18%  Similarity=0.195  Sum_probs=35.0

Q ss_pred             CC-CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            1 MD-EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         1 m~-~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      |. ..+||+|||||++||++|..|+++|++|+|+||++..
T Consensus         1 M~~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (397)
T 2vou_A            1 MSPTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   40 (397)
T ss_dssp             -CCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            44 4589999999999999999999999999999999764

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.22  E-value=1.2e-06  Score=90.14  Aligned_cols=38  Identities=29%  Similarity=0.487  Sum_probs=35.6

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      .++||+|||||++||++|..|+++|.+|+|+||++.++
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~   48 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRT   48 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            46899999999999999999999999999999998764

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.22  E-value=6.7e-07  Score=91.78  Aligned_cols=43  Identities=23%  Similarity=0.288  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEec--------CCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDR--------NAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~--------n~~~GG~~~s   45 (445)
                      .+|||+|||+|.+|++||..|++.|++|+++||        +..+||.|..
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~   55 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVN   55 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecc
Confidence            469999999999999999999999999999998        6789998754

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.21  E-value=6.4e-07  Score=91.06  Aligned_cols=42  Identities=24%  Similarity=0.374  Sum_probs=39.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      +|||+|||+|++|++||..|++.|++|+++|+++.+||.|..
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   42 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLR   42 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccce
Confidence            489999999999999999999999999999999999998753

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.21  E-value=9.9e-07  Score=81.25  Aligned_cols=37  Identities=22%  Similarity=0.379  Sum_probs=33.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      |. +|||+|||+|++||.+|..|++.|.+|+++|++..
T Consensus         1 M~-~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~   37 (232)
T 2cul_A            1 MA-AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLD   37 (232)
T ss_dssp             -C-CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             CC-CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            54 59999999999999999999999999999999843

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.21  E-value=6.8e-07  Score=90.91  Aligned_cols=42  Identities=26%  Similarity=0.268  Sum_probs=39.2

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +.+||+|||+|++||++|..|++.|++|+++|+++++||.+.
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~  162 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV  162 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            458999999999999999999999999999999999999753

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.21  E-value=6.1e-07  Score=91.86  Aligned_cols=58  Identities=7%  Similarity=0.007  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCC-eEEEcCEEEECCCCCCc
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEG-ETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g-~~~~ad~VI~~~~~~p~  290 (445)
                      ++.+.+.+.++..|.+++++++|++|..+++++...+. .+| +++.||.||.+.+..|.
T Consensus       227 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~  286 (479)
T 2hqm_A          227 CIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSH  286 (479)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCc
Confidence            57777888888899999999999999874344234454 477 78999999998876543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.20  E-value=6.2e-07  Score=86.20  Aligned_cols=43  Identities=16%  Similarity=0.221  Sum_probs=38.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |.+.+||+|||+|++|+++|..|++.|++|+++|++ .+||.+.
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   44 (320)
T 1trb_A            2 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT   44 (320)
T ss_dssp             CEEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGG
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEe
Confidence            345789999999999999999999999999999975 7888764

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.19  E-value=7.3e-07  Score=93.58  Aligned_cols=58  Identities=17%  Similarity=0.249  Sum_probs=46.3

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeC----------------CeEEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSE----------------GETAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~----------------g~~~~ad~VI~~~~~~p  289 (445)
                      +.+.+.|.+.++..|++|+++++|++|..++++++++|.+.                |.+++||.||.+.+...
T Consensus       144 ~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S  217 (584)
T 2gmh_A          144 GHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHG  217 (584)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTC
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCc
Confidence            46667777888888999999999999998655778777642                36899999999887653

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.19  E-value=7.6e-07  Score=86.43  Aligned_cols=44  Identities=23%  Similarity=0.275  Sum_probs=38.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      |...+||+|||+|++|+++|..|++.|++|+++|++ .+||.+..
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   54 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMT   54 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGS
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence            345699999999999999999999999999999976 78887643

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.19  E-value=8.9e-07  Score=92.04  Aligned_cols=39  Identities=21%  Similarity=0.349  Sum_probs=34.8

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      ++||||||+|++||+||..|++ |.+|+|+||++..||..
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s   46 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGST   46 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC---
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCCh
Confidence            6999999999999999999999 99999999999887654

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.19  E-value=8.1e-07  Score=92.51  Aligned_cols=45  Identities=24%  Similarity=0.325  Sum_probs=40.9

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLN   47 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~   47 (445)
                      .++||+|||||++|+.+|..|++.|++|+++|+++.+||.|...+
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~   64 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNR   64 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCC
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCC
Confidence            458999999999999999999999999999999999999776433

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.19  E-value=8e-07  Score=95.19  Aligned_cols=43  Identities=28%  Similarity=0.397  Sum_probs=40.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      ..+||+|||+|++||+||..|++.|++|+++|+++++||.+..
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~  432 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ  432 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence            4689999999999999999999999999999999999998764

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.18  E-value=1.3e-06  Score=89.82  Aligned_cols=40  Identities=15%  Similarity=0.260  Sum_probs=37.2

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      ..+||+|||||++||++|..|++.|++|+|+|+++.+|+.
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~  130 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH  130 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC
Confidence            4689999999999999999999999999999999988754

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.18  E-value=7.7e-07  Score=90.92  Aligned_cols=43  Identities=26%  Similarity=0.386  Sum_probs=39.9

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      .+|||+|||+|.+|++||..|++.|++|+++|+++.+||.|..
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~   47 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLN   47 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccc
Confidence            3589999999999999999999999999999999999998753

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.16  E-value=1.4e-06  Score=90.43  Aligned_cols=40  Identities=30%  Similarity=0.502  Sum_probs=36.7

Q ss_pred             CC-CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            1 MD-EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         1 m~-~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      |. .++||+|||||++||++|+.|++.|.+|+|+||++.++
T Consensus         1 M~~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~   41 (535)
T 3ihg_A            1 MNDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLS   41 (535)
T ss_dssp             CCCCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCC
T ss_pred             CCCccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            54 46999999999999999999999999999999998765

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.16  E-value=9.1e-07  Score=93.93  Aligned_cols=56  Identities=18%  Similarity=0.130  Sum_probs=45.2

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~~~  288 (445)
                      ..|.++|.+.+...|++++.+++|++|..+ ++++.+|..    +|+  .+.|+.||.+.+-+
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~  219 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY  219 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEec-CCEEEEEEEEECCCCcEEEEEcCEEEEccCcc
Confidence            368889999888889999999999999984 778888752    455  58999999876543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.15  E-value=8.2e-07  Score=90.47  Aligned_cols=42  Identities=31%  Similarity=0.514  Sum_probs=38.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      |. +|||+|||+|++|+++|..|++.|++|+++|++ .+||.+.
T Consensus         1 M~-~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~   42 (464)
T 2a8x_A            1 MT-HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCL   42 (464)
T ss_dssp             CE-EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHH
T ss_pred             CC-cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCccc
Confidence            54 699999999999999999999999999999998 7888764

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.15  E-value=1.2e-06  Score=90.33  Aligned_cols=56  Identities=20%  Similarity=0.189  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe---CC--eEEEcCEEEECCCCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS---EG--ETAKCKKVVCDPSYLP  289 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~---~g--~~~~ad~VI~~~~~~p  289 (445)
                      .+.+.|.+.++..|++++++++|++|..+ ++++.+|..   +|  .+++||.||.+.+...
T Consensus       112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~-~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S  172 (512)
T 3e1t_A          112 RFDDMLLRNSERKGVDVRERHEVIDVLFE-GERAVGVRYRNTEGVELMAHARFIVDASGNRT  172 (512)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEE-TTEEEEEEEECSSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEE-CCEEEEEEEEeCCCCEEEEEcCEEEECCCcch
Confidence            45666777777889999999999999984 677766652   46  3899999999877653

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.15  E-value=8.2e-07  Score=93.63  Aligned_cols=56  Identities=18%  Similarity=0.271  Sum_probs=45.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~~~  288 (445)
                      .+|.++|.+.+...|++++.++.|++|..+ ++++.||..    +|+  ++.|+.||.+.+-+
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~  216 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLME-NGECRGVIALCIEDGTIHRFRAKNTVIATGGY  216 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCcc
Confidence            368888988888889999999999999984 778888763    454  68999999876543

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.14  E-value=1.3e-06  Score=82.62  Aligned_cols=39  Identities=18%  Similarity=0.190  Sum_probs=35.2

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      ++||+|||+|++||++|..|++.|++|+++|+++..|+.
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~   40 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRF   40 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCccccc
Confidence            389999999999999999999999999999998765543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.14  E-value=1.3e-06  Score=90.86  Aligned_cols=43  Identities=23%  Similarity=0.379  Sum_probs=40.0

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      .++||||||||++|+++|..|++.|++|+++|+++.+||.|..
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~   50 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYW   50 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccc
Confidence            3589999999999999999999999999999999999998753

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.13  E-value=1.6e-06  Score=83.03  Aligned_cols=40  Identities=18%  Similarity=0.300  Sum_probs=36.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCCCCCcccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAYYGGESTS   45 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~~GG~~~s   45 (445)
                      |||+|||+|++|+++|..|++.|+ +|+++|++ .+||.+..
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~   42 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITG   42 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGG
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccccc
Confidence            799999999999999999999999 99999995 68887753

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.13  E-value=9.5e-07  Score=85.44  Aligned_cols=42  Identities=19%  Similarity=0.244  Sum_probs=38.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEec----CCCCCCcccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDR----NAYYGGESTS   45 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~----n~~~GG~~~s   45 (445)
                      .+||+|||+|++|+++|..|++.|++|+++|+    ....||.+..
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~   53 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTT   53 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeee
Confidence            58999999999999999999999999999999    6788887654

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.13  E-value=1.6e-06  Score=88.36  Aligned_cols=41  Identities=17%  Similarity=0.358  Sum_probs=39.0

Q ss_pred             ccEEEECCChhHHHHHHHhhh---CCCe---EEEEecCCCCCCcccc
Q 036458            5 YDVIVLGTGLKECILSGVLSV---DGLK---VLHMDRNAYYGGESTS   45 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~---~G~~---VlvlE~n~~~GG~~~s   45 (445)
                      +||+|||||++||+||..|++   .|.+   |+++|+++.+||.|..
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~   49 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNY   49 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeec
Confidence            699999999999999999999   9999   9999999999998864

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.13  E-value=1.7e-06  Score=90.45  Aligned_cols=38  Identities=26%  Similarity=0.347  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      .++||||||+|++||++|+.|+++|++|+|+||++.++
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~   85 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPV   85 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            35899999999999999999999999999999998764

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.12  E-value=1.4e-06  Score=90.62  Aligned_cols=44  Identities=23%  Similarity=0.244  Sum_probs=40.3

Q ss_pred             cccEEEECCChhHHHHHHHhh-hCCCeEEEEecCCCCCCcccccc
Q 036458            4 DYDVIVLGTGLKECILSGVLS-VDGLKVLHMDRNAYYGGESTSLN   47 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La-~~G~~VlvlE~n~~~GG~~~s~~   47 (445)
                      ++||+|||||++|+++|..|+ +.|++|+++|+++.+||.+...+
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~   52 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNR   52 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccC
Confidence            589999999999999999999 99999999999999999876433

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.12  E-value=1.1e-06  Score=89.74  Aligned_cols=40  Identities=35%  Similarity=0.456  Sum_probs=37.6

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +|||+|||+|.+|++||..|++.|++|+++|+++ +||.|.
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~   45 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCL   45 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCC
Confidence            5999999999999999999999999999999998 898764

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.12  E-value=1.5e-06  Score=89.11  Aligned_cols=58  Identities=14%  Similarity=0.078  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCC-----eEEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEG-----ETAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g-----~~~~ad~VI~~~~~~p  289 (445)
                      .++.+.+.+.++..|.++++++.|++|..++++.+.....++     .++.||.||++.+..|
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p  289 (483)
T 3dgh_A          227 QQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKG  289 (483)
T ss_dssp             HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccccc
Confidence            357777888888999999999999999874445443222333     2789999999987654

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.12  E-value=1.4e-06  Score=86.48  Aligned_cols=36  Identities=19%  Similarity=0.372  Sum_probs=33.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      ++||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   37 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            489999999999999999999999999999998753

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.12  E-value=1.4e-06  Score=91.51  Aligned_cols=57  Identities=19%  Similarity=0.146  Sum_probs=45.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~~~  288 (445)
                      .++.++|.+.+...|++++++++|++|..++++++.+|..    +|+  ++.|+.||.+.+-+
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~  205 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA  205 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence            4788889888888899999999999999843678888762    454  68999999876543

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.10  E-value=1.3e-06  Score=85.45  Aligned_cols=36  Identities=14%  Similarity=0.038  Sum_probs=33.3

Q ss_pred             cEEEECCChhHHHHHHHhhhCC------CeEEEEecCCCCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG------LKVLHMDRNAYYGG   41 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G------~~VlvlE~n~~~GG   41 (445)
                      ||||||||++||++|+.|+++|      ++|+|+|++...+|
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~   43 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT   43 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence            8999999999999999999998      99999999986544

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.10  E-value=2.1e-06  Score=89.42  Aligned_cols=39  Identities=21%  Similarity=0.169  Sum_probs=36.1

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      ++||+|||||++||++|..|+++|.+|+|+||++.+++.
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~   64 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITH   64 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCC
Confidence            589999999999999999999999999999999877643

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.09  E-value=1.5e-06  Score=88.27  Aligned_cols=41  Identities=20%  Similarity=0.270  Sum_probs=38.2

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      .+|||+|||+|.+|++||..|++.|++|+++|++ .+||.|.
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~   42 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCL   42 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCc
Confidence            4689999999999999999999999999999998 8898764

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.09  E-value=2e-06  Score=85.39  Aligned_cols=35  Identities=29%  Similarity=0.394  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      .+|+|||||++||++|..|+++|++|+|+||++.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            47999999999999999999999999999998654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.09  E-value=1.6e-06  Score=88.99  Aligned_cols=57  Identities=21%  Similarity=0.230  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p~  290 (445)
                      ++.+.+.+.++..|.+++++++|++|..++++.+ .|. .+|+++.||.||.+.+..|.
T Consensus       232 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-~v~~~~G~~i~~D~vv~a~G~~p~  289 (490)
T 1fec_A          232 ELRKQLTEQLRANGINVRTHENPAKVTKNADGTR-HVVFESGAEADYDVVMLAIGRVPR  289 (490)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCE-EEEETTSCEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEE-EEEECCCcEEEcCEEEEccCCCcC
Confidence            5778888888899999999999999987433333 344 57778999999998876553

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.08  E-value=2.7e-06  Score=88.34  Aligned_cols=56  Identities=13%  Similarity=0.173  Sum_probs=45.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~  288 (445)
                      ..+.+.|.+.++..|++++.+ .|++|..++++.+++|.. +|+++.||.||.+.+..
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~  221 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMR  221 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCc
Confidence            567788888888889999999 899998855666666764 67789999999987654

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.08  E-value=2.4e-06  Score=90.67  Aligned_cols=39  Identities=15%  Similarity=0.247  Sum_probs=35.9

Q ss_pred             CCcccEEEECCChhHHHHHHHhhh-CCCeEEEEecCCCCC
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSV-DGLKVLHMDRNAYYG   40 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~-~G~~VlvlE~n~~~G   40 (445)
                      .+++||+|||||++||++|..|++ .|.+|+|+||++.++
T Consensus        30 ~~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~   69 (639)
T 2dkh_A           30 PSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPM   69 (639)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCC
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            356899999999999999999999 999999999998764

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.07  E-value=2.2e-06  Score=89.92  Aligned_cols=39  Identities=28%  Similarity=0.440  Sum_probs=35.6

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC-CCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA-YYGG   41 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~-~~GG   41 (445)
                      .+|||||||||++||.||..|++.|.+|+++|++. .+|+
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~   59 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR   59 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC
Confidence            46999999999999999999999999999999985 4555

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.05  E-value=2.7e-06  Score=89.05  Aligned_cols=54  Identities=15%  Similarity=0.156  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHH-cCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCC
Q 036458          233 ELPQAFARLSAV-YGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYL  288 (445)
Q Consensus       233 ~L~q~l~r~~~~-~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~  288 (445)
                      .+.+.+.+.++. .|.++ +++.|++|.. +++++.+|.+ +|.++.||.||.+.+.+
T Consensus       124 ~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~-e~g~V~GV~t~dG~~i~AdaVVLATG~~  179 (637)
T 2zxi_A          124 RYREYMKKVCENQENLYI-KQEEVVDIIV-KNNQVVGVRTNLGVEYKTKAVVVTTGTF  179 (637)
T ss_dssp             HHHHHHHHHHHTCTTEEE-EESCEEEEEE-SSSBEEEEEETTSCEEECSEEEECCTTC
T ss_pred             HHHHHHHHHHHhCCCCEE-EEeEEEEEEe-cCCEEEEEEECCCcEEEeCEEEEccCCC
Confidence            455666676766 47888 6889999988 4778888875 67889999999987654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.04  E-value=1.5e-06  Score=89.39  Aligned_cols=56  Identities=14%  Similarity=0.146  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      ++.+.+.+.++..|.+++++++|++|..+ ++++.....+|+++.||.||++.+..|
T Consensus       224 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~-~~~v~v~~~~g~~i~aD~Vv~a~G~~p  279 (499)
T 1xdi_A          224 DAALVLEESFAERGVRLFKNARAASVTRT-GAGVLVTMTDGRTVEGSHALMTIGSVP  279 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEEC-SSSEEEEETTSCEEEESEEEECCCEEE
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCEEEEEECCCcEEEcCEEEECCCCCc
Confidence            57788888888999999999999999874 444433335778899999999877654

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.04  E-value=2.9e-06  Score=91.38  Aligned_cols=43  Identities=23%  Similarity=0.321  Sum_probs=40.1

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      +.+||+|||||++||+||..|++.|++|+++|+++++||.+..
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            3579999999999999999999999999999999999998754

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.04  E-value=2.9e-06  Score=88.84  Aligned_cols=57  Identities=23%  Similarity=0.197  Sum_probs=46.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCC-CcEEEEEe---CCe--EEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGD-GKVIGVTS---EGE--TAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~-g~~~~v~~---~g~--~~~ad~VI~~~~~~p  289 (445)
                      ..+.+.|.+.++..|++++++++|++|..+ + +++++|..   +|+  ++.||.||.+.+-++
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~  317 (572)
T 1d4d_A          255 AHVAQVLWDNAVKRGTDIRLNSRVVRILED-ASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  317 (572)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC---CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHHcCCeEEecCEEEEEEEC-CCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence            468889999999999999999999999884 5 78888763   564  689999999877554

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.03  E-value=2.6e-06  Score=87.67  Aligned_cols=59  Identities=10%  Similarity=0.008  Sum_probs=45.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeE-EEcCEEEECCCCCCc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGET-AKCKKVVCDPSYLPD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~-~~ad~VI~~~~~~p~  290 (445)
                      .++.+.+.+.++..|.++++++.|++|..++++.+.....+|++ +.||.||.+.+..|.
T Consensus       217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~  276 (500)
T 1onf_A          217 ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPD  276 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCT
T ss_pred             hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcC
Confidence            36777888888999999999999999987433433333357777 999999999887664

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.03  E-value=2e-06  Score=87.48  Aligned_cols=40  Identities=13%  Similarity=0.240  Sum_probs=38.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +|||+|||+|.+|++||..|++.|++|+++|+ +.+||.|.
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~   44 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCL   44 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCC
Confidence            58999999999999999999999999999999 78999875

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.02  E-value=3.1e-06  Score=88.88  Aligned_cols=54  Identities=15%  Similarity=0.092  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHH-cCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCC
Q 036458          233 ELPQAFARLSAV-YGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYL  288 (445)
Q Consensus       233 ~L~q~l~r~~~~-~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~  288 (445)
                      .+.+.+.+.++. .|.++ ++++|+.|.. +++++++|.+ +|.++.||.||.+.+.+
T Consensus       125 ~~~~~L~e~Le~~~GV~I-~~~~V~~L~~-e~g~V~GV~t~dG~~I~Ad~VVLATGt~  180 (651)
T 3ces_A          125 LYRQAVRTALENQPNLMI-FQQAVEDLIV-ENDRVVGAVTQMGLKFRAKAVVLTVGTF  180 (651)
T ss_dssp             HHHHHHHHHHHTCTTEEE-EECCEEEEEE-SSSBEEEEEETTSEEEEEEEEEECCSTT
T ss_pred             HHHHHHHHHHHhCCCCEE-EEEEEEEEEe-cCCEEEEEEECCCCEEECCEEEEcCCCC
Confidence            455666666666 57888 6889999988 4677878875 67889999999887654

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.02  E-value=3e-06  Score=83.87  Aligned_cols=35  Identities=14%  Similarity=0.250  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~   39 (445)
                      .||+|||||++||++|..|+++  |++|+|+||++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            3899999999999999999999  9999999999876

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.02  E-value=3.4e-06  Score=80.66  Aligned_cols=39  Identities=23%  Similarity=0.443  Sum_probs=35.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +|||+|||+|++|+++|..|++.|++|+++|+  .+||.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~   39 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQIL   39 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceec
Confidence            48999999999999999999999999999986  5888775

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.01  E-value=2.9e-06  Score=85.62  Aligned_cols=34  Identities=15%  Similarity=0.138  Sum_probs=32.1

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .+||+|||||++||++|..|+++|++|+|+|+++
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3799999999999999999999999999999986

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.99  E-value=2.9e-06  Score=88.04  Aligned_cols=57  Identities=11%  Similarity=-0.049  Sum_probs=45.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      .++.+.+.+.++..|..+++++.|.++... ++.+.....+++++.+|.|+++.+-.|
T Consensus       263 ~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~-~~~~~v~~~~~~~~~~D~vLvAvGR~P  319 (542)
T 4b1b_A          263 QQCAVKVKLYMEEQGVMFKNGILPKKLTKM-DDKILVEFSDKTSELYDTVLYAIGRKG  319 (542)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEE-TTEEEEEETTSCEEEESEEEECSCEEE
T ss_pred             hhHHHHHHHHHHhhcceeecceEEEEEEec-CCeEEEEEcCCCeEEEEEEEEcccccC
Confidence            468888888899999999999999999874 555443345778889999999876544

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.99  E-value=4e-06  Score=87.63  Aligned_cols=37  Identities=19%  Similarity=0.393  Sum_probs=34.0

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCC-CeEEEEecCCC
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAY   38 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~   38 (445)
                      +++||+||||+|.+||++|.+||+.| .+|+|||+.+.
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            35799999999999999999999998 69999999866

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.99  E-value=2.3e-06  Score=88.79  Aligned_cols=38  Identities=32%  Similarity=0.558  Sum_probs=35.0

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      .+||+||||+|.+||++|.+|++ |.+|+|||+....++
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~~   62 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPTA   62 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGGG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcCC
Confidence            46999999999999999999999 999999999887654

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.98  E-value=4.8e-06  Score=73.09  Aligned_cols=33  Identities=39%  Similarity=0.517  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      |||+|||+|++|+.+|..|++.|++|+++|+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            799999999999999999999999999999987

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.97  E-value=3e-06  Score=93.98  Aligned_cols=42  Identities=29%  Similarity=0.359  Sum_probs=40.0

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      .++||+|||+|++|++||..|++.|++|+++|+++++||.+.
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            358999999999999999999999999999999999999887

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.97  E-value=2.3e-06  Score=87.90  Aligned_cols=42  Identities=21%  Similarity=0.221  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      .++||+|||+|++|+++|..|++. ++|+++|+++++||.+..
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~  148 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL  148 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec
Confidence            357999999999999999999999 999999999999998764

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.97  E-value=3.9e-06  Score=86.76  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=32.8

Q ss_pred             CcccEEEECCChhHHHHHHHhhh-CCCeEEEEecCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSV-DGLKVLHMDRNAYY   39 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~-~G~~VlvlE~n~~~   39 (445)
                      .+||+||||+|.+|+++|.+||+ .|++|+|||+.+..
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~   53 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEP   53 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCC
Confidence            47999999999999999999998 67999999997553

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.97  E-value=4e-06  Score=85.12  Aligned_cols=41  Identities=27%  Similarity=0.308  Sum_probs=37.6

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCC-----CeEEEEecCCCCCCcc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDG-----LKVLHMDRNAYYGGES   43 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G-----~~VlvlE~n~~~GG~~   43 (445)
                      +.|||+|||+|++||++|..|++.|     .+|+++|+++.+|...
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~   74 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHG   74 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcC
Confidence            4589999999999999999999999     9999999999998444

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.96  E-value=5.8e-06  Score=88.22  Aligned_cols=42  Identities=19%  Similarity=0.289  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      ..+||+|||+|.+|+.||..|++.|++|+++|+++++||.+.
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~  413 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN  413 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence            458999999999999999999999999999999999999864

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.96  E-value=4.5e-06  Score=86.44  Aligned_cols=56  Identities=7%  Similarity=0.059  Sum_probs=43.9

Q ss_pred             chHHHHHHHHHHH-cCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCC
Q 036458          232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~-~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~  288 (445)
                      ..+.+.|.+.++. .|++++.+ .|++|..++++.+++|.. +|++++||.||.+.+..
T Consensus       175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~  232 (526)
T 2pyx_A          175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAK  232 (526)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGG
T ss_pred             HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcc
Confidence            4577778888887 89999999 599998754566666664 66779999999987654

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.96  E-value=5.5e-06  Score=84.63  Aligned_cols=55  Identities=20%  Similarity=0.271  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe--CCeEEEcCEEEECCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS--EGETAKCKKVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~--~g~~~~ad~VI~~~~~~  288 (445)
                      .++.+.|.+.++..|.+++.+++| +|..+ ++++.++..  ++.++.||.||.+.+.+
T Consensus       119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~-~~~v~Gv~v~~~~g~~~a~~VVlAtGg~  175 (472)
T 2e5v_A          119 REIFNFLLKLAREEGIPIIEDRLV-EIRVK-DGKVTGFVTEKRGLVEDVDKLVLATGGY  175 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCEECCCEE-EEEEE-TTEEEEEEETTTEEECCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEE-EEEEe-CCEEEEEEEEeCCCeEEeeeEEECCCCC
Confidence            467788888887789999999999 99874 677777763  34457899999986644

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.95  E-value=6.6e-06  Score=80.82  Aligned_cols=39  Identities=21%  Similarity=0.096  Sum_probs=35.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      +||+|||+|++|+.||..|+++|++|+++|++...+...
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~   40 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPA   40 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSS
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCcc
Confidence            699999999999999999999999999999998665544

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.95  E-value=5.9e-06  Score=86.06  Aligned_cols=56  Identities=14%  Similarity=0.157  Sum_probs=45.8

Q ss_pred             chHHHHHHHHHHHc-CcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCC
Q 036458          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~~-Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~  288 (445)
                      ..+.+.|.+.++.. |++++++ +|++|..++++.+++|.+ +|+++.||.||.+.+..
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~  251 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFR  251 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCc
Confidence            46788888888888 9999999 999998755666667764 67789999999987654

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.94  E-value=4.4e-06  Score=87.93  Aligned_cols=56  Identities=18%  Similarity=0.153  Sum_probs=44.9

Q ss_pred             chHHHHHHHHHHHcC-cEEEeCCcceeEEEcCCCcEEEEE----eCCe--EEEcCEEEECCCCC
Q 036458          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDGDGKVIGVT----SEGE--TAKCKKVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~~G-g~i~l~~~V~~I~~~~~g~~~~v~----~~g~--~~~ad~VI~~~~~~  288 (445)
                      .+|.++|.+.+...| .++++++.|++|..+ ++++.+|.    .+|+  ++.|+.||.+.+-+
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~  196 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGA  196 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCCC
Confidence            367888888888888 999999999999984 67777764    2566  68999999876643

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.91  E-value=7e-06  Score=85.39  Aligned_cols=37  Identities=35%  Similarity=0.481  Sum_probs=34.7

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      .+||+||||+|.+|+++|.+|+++|++|++||+....
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            5799999999999999999999999999999998754

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.89  E-value=7.5e-06  Score=85.55  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=32.7

Q ss_pred             CcccEEEECCChhHHHHHHHhhhC-CCeEEEEecCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVD-GLKVLHMDRNA   37 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~n~   37 (445)
                      ++||+||||||.+||++|.+|++. |.+|+|||+.+
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            579999999999999999999975 89999999987

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.89  E-value=7.1e-06  Score=87.08  Aligned_cols=55  Identities=13%  Similarity=0.086  Sum_probs=42.8

Q ss_pred             chHHHHHHHHHHHc--CcEEEeCCcceeEEEcCC--CcEEEEEe----CCe--EEEcCEEEECCC
Q 036458          232 GELPQAFARLSAVY--GGTYMLNKPECKVEFDGD--GKVIGVTS----EGE--TAKCKKVVCDPS  286 (445)
Q Consensus       232 ~~L~q~l~r~~~~~--Gg~i~l~~~V~~I~~~~~--g~~~~v~~----~g~--~~~ad~VI~~~~  286 (445)
                      .++.++|.+.+...  |.+++.++.|.+|..+++  |++.||..    +|+  .+.|+.||.+.+
T Consensus       166 ~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATG  230 (662)
T 3gyx_A          166 ESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACG  230 (662)
T ss_dssp             TSHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCC
Confidence            36778888888777  999999999999998533  38888852    443  689999998764

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.86  E-value=9.7e-06  Score=85.99  Aligned_cols=54  Identities=17%  Similarity=0.109  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHc-Cc-EEEeCCcceeEEEcCCC---cEEEEEe----CCe--EEEcCEEEECCCC
Q 036458          233 ELPQAFARLSAVY-GG-TYMLNKPECKVEFDGDG---KVIGVTS----EGE--TAKCKKVVCDPSY  287 (445)
Q Consensus       233 ~L~q~l~r~~~~~-Gg-~i~l~~~V~~I~~~~~g---~~~~v~~----~g~--~~~ad~VI~~~~~  287 (445)
                      .+.+.+.+.++.. |+ +++.+++|++|..+ ++   ++.||..    +|+  ++.|+.||.+.+-
T Consensus       152 ~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~-~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG  216 (643)
T 1jnr_A          152 SYKPIIAEAAKMAVGEENIYERVFIFELLKD-NNDPNAVAGAVGFSVREPKFYVFKAKAVILATGG  216 (643)
T ss_dssp             THHHHHHHHHHHHHCGGGEECSEEEEEEEEC-TTCTTBEEEEEEEESSSSCEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHhcCCCcEEEecCEEEEEEEc-CCccceeEEEEEEEecCCcEEEEEcCEEEECCCc
Confidence            4667777777777 99 99999999999985 55   8888752    454  6899999987653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.85  E-value=7.7e-06  Score=86.02  Aligned_cols=41  Identities=29%  Similarity=0.345  Sum_probs=36.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecC-C-------CCCCcc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN-A-------YYGGES   43 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n-~-------~~GG~~   43 (445)
                      ..|||+|||+|.+|++||..|++.|++|+++|+. +       .+||.|
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~  154 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTC  154 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHH
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceE
Confidence            4689999999999999999999999999999983 3       478864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.84  E-value=1e-05  Score=90.25  Aligned_cols=40  Identities=23%  Similarity=0.403  Sum_probs=38.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCCCCCcc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAYYGGES   43 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~~GG~~   43 (445)
                      .+||+|||+|.+||+||..|++.|+ +|+++|+++++||.+
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~  227 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS  227 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence            5799999999999999999999999 799999999999975

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.84  E-value=1.1e-05  Score=83.53  Aligned_cols=40  Identities=23%  Similarity=0.471  Sum_probs=36.7

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      ..+||+|||||++|++||..|++.|++|+++|+  ++||.+.
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~  250 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVL  250 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGT
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccc
Confidence            468999999999999999999999999999986  5888875

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.84  E-value=1.3e-05  Score=80.78  Aligned_cols=59  Identities=17%  Similarity=0.278  Sum_probs=47.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEc-CCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFD-GDGKVIGVT-SEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~-~~g~~~~v~-~~g~~~~ad~VI~~~~~~p~  290 (445)
                      .++.+.+.+.++..|.+++++++|++|..+ +++++..|. .+|+++.||.||.+.+..|.
T Consensus       191 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~  251 (431)
T 1q1r_A          191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPN  251 (431)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcC
Confidence            467778888888999999999999999761 256666666 47889999999999886653

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.81  E-value=7.7e-06  Score=84.25  Aligned_cols=56  Identities=14%  Similarity=0.146  Sum_probs=45.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~  288 (445)
                      ..+.+.|.+.+...|++++.+ +|++|..++++.+++|++ +|++++||.||.+.+..
T Consensus       173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  229 (511)
T 2weu_A          173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFR  229 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcc
Confidence            467788888888889999999 999998855666667764 67789999999987654

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.81  E-value=9e-06  Score=82.63  Aligned_cols=41  Identities=15%  Similarity=0.155  Sum_probs=38.3

Q ss_pred             cccEEEECCChhHHHHHHHhhh-C------CCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSV-D------GLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~-~------G~~VlvlE~n~~~GG~~~   44 (445)
                      .+||+|||+|++|+.||..|++ .      |++|+++|+++++||.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            5899999999999999999999 7      999999999999999763

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.77  E-value=1.5e-05  Score=84.92  Aligned_cols=36  Identities=31%  Similarity=0.402  Sum_probs=34.0

Q ss_pred             cccEEEECCChhHHHHHHHhhh-----CCCeEEEEecCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSV-----DGLKVLHMDRNAYY   39 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~-----~G~~VlvlE~n~~~   39 (445)
                      ++||+|||||++||++|..|++     .|.+|+|+||++.+
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            6899999999999999999999     99999999998764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.77  E-value=1.6e-05  Score=78.80  Aligned_cols=57  Identities=18%  Similarity=0.177  Sum_probs=45.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p~  290 (445)
                      .++.+.+.+.++..|.+++++++|++|..+ ++.+ .+. .+|+++.||.||.+.+..|.
T Consensus       187 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~~g~~i~~d~vv~a~G~~p~  244 (384)
T 2v3a_A          187 PAAAKAVQAGLEGLGVRFHLGPVLASLKKA-GEGL-EAHLSDGEVIPCDLVVSAVGLRPR  244 (384)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEec-CCEE-EEEECCCCEEECCEEEECcCCCcC
Confidence            356788888888899999999999999874 4433 344 57889999999999886653

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.77  E-value=1.4e-05  Score=81.36  Aligned_cols=42  Identities=14%  Similarity=0.057  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCC--CeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~~GG~~~   44 (445)
                      ..+||+|||+|++|+.+|..|++.|  ++|+++|+++++||++.
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~   48 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   48 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence            4689999999999999999999999  99999999999998763

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.75  E-value=1.7e-05  Score=80.26  Aligned_cols=54  Identities=17%  Similarity=0.172  Sum_probs=42.8

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      ++.+.+.+.++.. .++++++.|.+|..+ + ++..+..+|+++.||.||.+.+..|
T Consensus       191 ~~~~~l~~~l~~~-v~i~~~~~v~~i~~~-~-~v~~v~~~g~~i~~D~Vv~a~G~~p  244 (449)
T 3kd9_A          191 EVTDILEEKLKKH-VNLRLQEITMKIEGE-E-RVEKVVTDAGEYKAELVILATGIKP  244 (449)
T ss_dssp             HHHHHHHHHHTTT-SEEEESCCEEEEECS-S-SCCEEEETTEEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHHHhC-cEEEeCCeEEEEecc-C-cEEEEEeCCCEEECCEEEEeeCCcc
Confidence            5667777777777 999999999999753 3 4555667889999999999987665

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.68  E-value=2.6e-05  Score=80.28  Aligned_cols=38  Identities=13%  Similarity=0.291  Sum_probs=35.2

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      ..+||+||||+|.+|+++|.+|++.|++|+++|+....
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            45799999999999999999999999999999998754

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.68  E-value=2.7e-05  Score=80.10  Aligned_cols=38  Identities=18%  Similarity=0.336  Sum_probs=35.7

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      .+||+||||+|.+|+++|.+|++.|++|+++|+..+.+
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            46999999999999999999999999999999998765

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.67  E-value=2.9e-05  Score=79.67  Aligned_cols=56  Identities=18%  Similarity=0.163  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p~  290 (445)
                      ++.+.+.+.++..|.++++++.|++|..+ ++++ .|. .+|+++.||.||++.+..|.
T Consensus       227 ~~~~~~~~~l~~~GV~v~~~~~V~~i~~~-~~~~-~v~l~dG~~i~aD~Vv~a~G~~pn  283 (493)
T 1m6i_A          227 YLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGLEPN  283 (493)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCEEEC
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEec-CCeE-EEEECCCCEEECCEEEECCCCCcc
Confidence            56777888888999999999999999863 4444 454 57889999999999876653

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.66  E-value=2e-05  Score=82.16  Aligned_cols=38  Identities=21%  Similarity=0.392  Sum_probs=35.1

Q ss_pred             cccEEEECCChhHHHHHHHhhh-CCCeEEEEecCCCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSV-DGLKVLHMDRNAYYGG   41 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~-~G~~VlvlE~n~~~GG   41 (445)
                      +||+||||+|.+||++|.+|++ .|.+|+|||+.+..++
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~   40 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDEN   40 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTT
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccC
Confidence            5999999999999999999998 7999999999987744

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.66  E-value=2.8e-05  Score=78.77  Aligned_cols=58  Identities=19%  Similarity=0.189  Sum_probs=48.0

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      -.++.+.+.+.++..|.+++++++|++|.. +++++..+..+|+++.||.||++.+..|
T Consensus       190 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~v~~v~~~g~~i~~D~vv~a~G~~p  247 (452)
T 2cdu_A          190 DKEFTDILAKDYEAHGVNLVLGSKVAAFEE-VDDEIITKTLDGKEIKSDIAILCIGFRP  247 (452)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESSCEEEEEE-ETTEEEEEETTSCEEEESEEEECCCEEE
T ss_pred             hhhHHHHHHHHHHHCCCEEEcCCeeEEEEc-CCCeEEEEEeCCCEEECCEEEECcCCCC
Confidence            346778888888999999999999999986 3566666777888999999999987655

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.66  E-value=2.3e-05  Score=79.10  Aligned_cols=40  Identities=23%  Similarity=0.351  Sum_probs=37.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhh---CCCeEEEEecCCCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSV---DGLKVLHMDRNAYYG   40 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~---~G~~VlvlE~n~~~G   40 (445)
                      |....||+|||||++|+++|..|++   .|++|+++|+++++.
T Consensus         1 M~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~   43 (437)
T 3sx6_A            1 MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ   43 (437)
T ss_dssp             CTTSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEE
T ss_pred             CCCCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCc
Confidence            7777899999999999999999999   899999999999753

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.64  E-value=3.4e-05  Score=77.16  Aligned_cols=53  Identities=23%  Similarity=0.256  Sum_probs=42.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p~  290 (445)
                      .++.+.+.+.++..|.+++++++|++|. +  +   .|. .+|+++.||.||.+.+..|.
T Consensus       187 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~--~---~v~~~~g~~i~~D~vi~a~G~~p~  240 (408)
T 2gqw_A          187 ATLADFVARYHAAQGVDLRFERSVTGSV-D--G---VVLLDDGTRIAADMVVVGIGVLAN  240 (408)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEE-T--T---EEEETTSCEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHHcCcEEEeCCEEEEEE-C--C---EEEECCCCEEEcCEEEECcCCCcc
Confidence            3567778888889999999999999997 3  3   344 57889999999999887653

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.60  E-value=2.5e-05  Score=77.92  Aligned_cols=54  Identities=17%  Similarity=0.118  Sum_probs=42.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~  290 (445)
                      .++.+.+.+.++..|.+++++++|++|..  ++   .+..+|+++.||.||.++++.|.
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~~---v~~~~g~~~~~D~vi~a~G~~~~  271 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIRE--HE---IVDEKGNTIPADITILLPPYTGN  271 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEECS--SE---EEETTSCEEECSEEEEECCEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC--Ce---EEECCCCEEeeeEEEECCCCCcc
Confidence            36777888888899999999999999853  22   23457889999999999876653

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.59  E-value=4.2e-05  Score=79.46  Aligned_cols=39  Identities=26%  Similarity=0.403  Sum_probs=35.8

Q ss_pred             CcccEEEECCChhHHHHHHHhhhC-CCeEEEEecCCCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVD-GLKVLHMDRNAYYGG   41 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~n~~~GG   41 (445)
                      ..||+||||+|.+|+++|.+|+++ |++|++||+.....+
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~   51 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRG   51 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCC
Confidence            469999999999999999999998 899999999987654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.57  E-value=4.5e-05  Score=80.00  Aligned_cols=55  Identities=7%  Similarity=-0.029  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      .++.+.+.+.++..|.+++++++|++|..+ ++.  ....+|+++.||.||++.+..|
T Consensus       228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~--v~~~~g~~i~~D~Vi~a~G~~p  282 (588)
T 3ics_A          228 YEMAAYVHEHMKNHDVELVFEDGVDALEEN-GAV--VRLKSGSVIQTDMLILAIGVQP  282 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEGG-GTE--EEETTSCEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEECCeEEEEecC-CCE--EEECCCCEEEcCEEEEccCCCC
Confidence            467788888889999999999999999753 332  1235788999999999877654

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.56  E-value=4.6e-05  Score=77.01  Aligned_cols=56  Identities=18%  Similarity=0.149  Sum_probs=44.8

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      .++.+.+.+.++..|.+++++++|++|..  ++++..+..+|+++.||.||.+.+..|
T Consensus       191 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~~~v~~v~~~~~~i~~d~vi~a~G~~p  246 (447)
T 1nhp_A          191 KEFTDVLTEEMEANNITIATGETVERYEG--DGRVQKVVTDKNAYDADLVVVAVGVRP  246 (447)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEEC--SSBCCEEEESSCEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEc--cCcEEEEEECCCEEECCEEEECcCCCC
Confidence            35777888888889999999999999975  244545666778899999999887654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.53  E-value=4.6e-05  Score=78.04  Aligned_cols=57  Identities=16%  Similarity=0.206  Sum_probs=45.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~  290 (445)
                      .++.+.+.+.++..|.++++++.|++|..  ++++..+..+|+++.||.||.+.+..|.
T Consensus       236 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~v~~v~~~g~~i~~D~Vi~a~G~~p~  292 (490)
T 2bc0_A          236 RDLTDLMAKNMEEHGIQLAFGETVKEVAG--NGKVEKIITDKNEYDVDMVILAVGFRPN  292 (490)
T ss_dssp             HHHHHHHHHHHHTTTCEEEETCCEEEEEC--SSSCCEEEESSCEEECSEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEc--CCcEEEEEECCcEEECCEEEECCCCCcC
Confidence            45777788888889999999999999974  4455556668889999999999876553

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.51  E-value=7.4e-05  Score=74.67  Aligned_cols=57  Identities=14%  Similarity=0.082  Sum_probs=45.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~~p~  290 (445)
                      .++.+.+.+.++..|.++++++.|++|..  ++++.+|. .+|+++.||.||++.+..|.
T Consensus       185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~  242 (410)
T 3ef6_A          185 RRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRSFVADSALICVGAEPA  242 (410)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEC--SSSCCEEEETTSCEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEec--cCcEEEEEECCCCEEEcCEEEEeeCCeec
Confidence            35667777888889999999999999975  33455565 48889999999999887654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.51  E-value=5.7e-05  Score=77.14  Aligned_cols=56  Identities=14%  Similarity=0.118  Sum_probs=45.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      .++.+.+.+.++..|.+++++++|++|..  ++++..+..++.++.||.||.+.+..|
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~v~~v~~~~~~i~~D~vi~a~G~~p  282 (480)
T 3cgb_A          227 GDMAEYIYKEADKHHIEILTNENVKAFKG--NERVEAVETDKGTYKADLVLVSVGVKP  282 (480)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE--SSBEEEEEETTEEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCEEEEEEc--CCcEEEEEECCCEEEcCEEEECcCCCc
Confidence            35777888888899999999999999976  345666777778899999999987654

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.50  E-value=6.5e-05  Score=78.73  Aligned_cols=38  Identities=29%  Similarity=0.511  Sum_probs=34.8

Q ss_pred             CcccEEEECCChhHHHHHHHhhh-CCCeEEEEecCCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSV-DGLKVLHMDRNAYYG   40 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~-~G~~VlvlE~n~~~G   40 (445)
                      .+||+||||+|.+|+++|.+|++ .|++|++||+....-
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~~   61 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYES   61 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCT
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCccC
Confidence            46999999999999999999999 899999999987653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.46  E-value=8.1e-05  Score=73.27  Aligned_cols=35  Identities=23%  Similarity=0.225  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      -||+|||+|.+|++||..|++.| +|+++|++++.+
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~   43 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY   43 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc
Confidence            58999999999999999999999 999999998754

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.38  E-value=9.5e-05  Score=76.98  Aligned_cols=58  Identities=16%  Similarity=0.119  Sum_probs=45.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEc------------------CCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFD------------------GDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~------------------~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      .++.+.+.+.++..|.++++++.|++|..+                  +++++..+..+|+++.||.||.+.++.|
T Consensus       192 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  267 (565)
T 3ntd_A          192 REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRP  267 (565)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCcc
Confidence            456777778888899999999999999862                  2455544456788999999999887654

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.24  E-value=0.00024  Score=70.37  Aligned_cols=39  Identities=10%  Similarity=0.139  Sum_probs=35.9

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      +..+|+|||+|++|++||..|.+.|.+|+++|++++++.
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y   46 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPY   46 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCB
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCc
Confidence            357899999999999999999888999999999999874

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.22  E-value=0.00019  Score=73.74  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      +..|||||+|.+|+.+|..|++.|++|+++|+++|
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            46799999999999999999999999999999986

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.16  E-value=0.0002  Score=70.97  Aligned_cols=39  Identities=18%  Similarity=0.211  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC--eEEEEecCCCCCCcc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNAYYGGES   43 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~~~GG~~   43 (445)
                      .+|||||+|.+|++||..|++.|+  +|+++|+++++..+.
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p   43 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCY   43 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECST
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCcc
Confidence            479999999999999999998874  899999999865544

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.10  E-value=0.00032  Score=70.65  Aligned_cols=53  Identities=11%  Similarity=0.066  Sum_probs=41.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      .++.+.+.+.++..|.++++++.|+++..   ..  .+..+|+++.||.||.+.+..|
T Consensus       188 ~~~~~~~~~~l~~~gV~i~~~~~v~~~~~---~~--v~~~~g~~~~~D~vl~a~G~~P  240 (437)
T 4eqs_A          188 ADMNQPILDELDKREIPYRLNEEINAING---NE--ITFKSGKVEHYDMIIEGVGTHP  240 (437)
T ss_dssp             GGGGHHHHHHHHHTTCCEEESCCEEEEET---TE--EEETTSCEEECSEEEECCCEEE
T ss_pred             chhHHHHHHHhhccceEEEeccEEEEecC---Ce--eeecCCeEEeeeeEEEEeceec
Confidence            45667778888899999999999998742   22  2346889999999999877554

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.07  E-value=0.00031  Score=70.62  Aligned_cols=37  Identities=24%  Similarity=0.356  Sum_probs=32.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCC--CeEEEEecCCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAYY   39 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~~   39 (445)
                      |.+  +|||||||.+|++||..|++.+  .+|+++|++++.
T Consensus         1 M~K--~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~   39 (430)
T 3hyw_A            1 MAK--HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYF   39 (430)
T ss_dssp             -CC--EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEE
T ss_pred             CCC--cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCC
Confidence            554  6999999999999999999876  799999999874

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.06  E-value=9e-05  Score=76.14  Aligned_cols=39  Identities=15%  Similarity=0.042  Sum_probs=27.4

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      +-|||||||+|++||++|++|.++|...+++|+.+..|+
T Consensus        38 ~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~   76 (501)
T 4b63_A           38 ELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQ   76 (501)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CC
T ss_pred             CcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCC
Confidence            458999999999999999999987654444444444444

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=96.08  E-value=0.0059  Score=61.39  Aligned_cols=40  Identities=25%  Similarity=0.228  Sum_probs=36.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      ...+++|||+|..|+.+|..|++.|.+|+++|+++++..+
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  187 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV  187 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc
Confidence            3578999999999999999999999999999999987653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.98  E-value=0.0052  Score=60.66  Aligned_cols=38  Identities=13%  Similarity=0.022  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..+
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~  184 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER  184 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            47999999999999999999999999999999988765

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=95.79  E-value=0.0075  Score=57.22  Aligned_cols=37  Identities=19%  Similarity=0.102  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~  182 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRA  182 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCc
Confidence            3699999999999999999999999999999988643

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.78  E-value=0.0094  Score=49.05  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|+|+|+|..|..+|..|++.|++|+++|++.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999864

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.65  E-value=0.012  Score=50.00  Aligned_cols=34  Identities=24%  Similarity=0.512  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|+|+|+|..|+.+|..|++.|++|+++|++..
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4699999999999999999999999999999753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.64  E-value=0.011  Score=49.21  Aligned_cols=33  Identities=12%  Similarity=0.290  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      -.|+|+|.|--|..+|..|.+.|++|+++|++.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            469999999999999999999999999999985

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.58  E-value=0.013  Score=48.65  Aligned_cols=33  Identities=33%  Similarity=0.498  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..++|+|+|--|..+|..|+++|++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999974

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=95.55  E-value=0.012  Score=57.71  Aligned_cols=39  Identities=23%  Similarity=0.290  Sum_probs=35.6

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      ..+++|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~  183 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG  183 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc
Confidence            357999999999999999999999999999999987654

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.53  E-value=0.0094  Score=60.19  Aligned_cols=37  Identities=16%  Similarity=0.089  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  208 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP  208 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999998765

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=95.46  E-value=0.012  Score=59.41  Aligned_cols=37  Identities=19%  Similarity=0.111  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  206 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP  206 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999988754

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.44  E-value=0.012  Score=57.67  Aligned_cols=37  Identities=30%  Similarity=0.471  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      .+++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  180 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG  180 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc
Confidence            4799999999999999999999999999999998765

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.44  E-value=0.013  Score=59.01  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  207 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS  207 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            5799999999999999999999999999999988754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=95.40  E-value=0.014  Score=59.13  Aligned_cols=38  Identities=21%  Similarity=0.269  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  221 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS  221 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc
Confidence            47999999999999999999999999999999988763

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=95.35  E-value=0.013  Score=58.95  Aligned_cols=37  Identities=22%  Similarity=0.151  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -+|+|||+|..|+.+|..|++.|.+|+++|+++++..
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~  204 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP  204 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc
Confidence            4699999999999999999999999999999988643

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.26  E-value=0.017  Score=54.26  Aligned_cols=38  Identities=29%  Similarity=0.297  Sum_probs=33.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      |.+...|.|||+|.-|...|..|+++|++|+++|++..
T Consensus         1 Mm~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            1 MTGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            44445799999999999999999999999999999863

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.21  E-value=0.015  Score=54.85  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=32.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            47999999999999999999999999999987654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=95.16  E-value=0.02  Score=56.87  Aligned_cols=39  Identities=13%  Similarity=0.240  Sum_probs=35.5

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      ...|+|||+|..|+-+|..|++.|.+|+++|+.+++..+
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  183 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR  183 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc
Confidence            357999999999999999999999999999999987654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.15  E-value=0.013  Score=56.14  Aligned_cols=34  Identities=24%  Similarity=0.365  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      -.|.|||+|.-|...|..++++|++|+++|.++.
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            3699999999999999999999999999998753

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.12  E-value=0.024  Score=47.85  Aligned_cols=33  Identities=18%  Similarity=0.080  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      -.++|+|+|-.|...|..|.+.|++|+++|+++
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            479999999999999999999999999999973

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.10  E-value=0.021  Score=45.27  Aligned_cols=33  Identities=18%  Similarity=0.399  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCC-CeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~   37 (445)
                      ..|+|+|+|..|..++..|.+.| ++|.+++++.
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            46999999999999999999999 9999999874

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.08  E-value=0.018  Score=57.94  Aligned_cols=37  Identities=24%  Similarity=0.151  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  204 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP  204 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh
Confidence            4799999999999999999999999999999988654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=94.83  E-value=0.027  Score=53.44  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|.|||+|.-|...|..|+++|++|+++|++.
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999999999999999999999999999874

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=94.78  E-value=0.024  Score=57.24  Aligned_cols=37  Identities=22%  Similarity=0.174  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~  203 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF  203 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc
Confidence            4699999999999999999999999999999988653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=94.69  E-value=0.019  Score=58.25  Aligned_cols=38  Identities=26%  Similarity=0.294  Sum_probs=35.1

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      ..+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  223 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT  223 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh
Confidence            45799999999999999999999999999999988765

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.67  E-value=0.025  Score=53.48  Aligned_cols=38  Identities=13%  Similarity=-0.016  Sum_probs=32.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      |.....|.|||+|.-|...|..|+++|++|+++|++..
T Consensus        12 M~~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           12 TTEQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             ---CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             ccCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            33346899999999999999999999999999999875

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=94.65  E-value=0.028  Score=57.14  Aligned_cols=37  Identities=22%  Similarity=0.219  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  231 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLA  231 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhh
Confidence            4699999999999999999999999999999988654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=94.59  E-value=0.03  Score=56.59  Aligned_cols=37  Identities=24%  Similarity=0.327  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  215 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG  215 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC
Confidence            4699999999999999999999999999999998765

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=94.56  E-value=0.033  Score=55.69  Aligned_cols=39  Identities=18%  Similarity=0.200  Sum_probs=35.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      .-.|+|||+|..|+-+|..|++.|.+|+++|+.+++..+
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~  187 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER  187 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc
Confidence            347999999999999999999999999999999887543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=94.52  E-value=0.03  Score=56.42  Aligned_cols=37  Identities=19%  Similarity=0.107  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  208 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP  208 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999988754

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.52  E-value=0.028  Score=48.92  Aligned_cols=33  Identities=21%  Similarity=0.207  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhC-CCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVD-GLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~n~   37 (445)
                      -.|+|+|+|..|..+|..|.+. |++|+++|++.
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            3699999999999999999999 99999999975

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=94.52  E-value=0.025  Score=57.34  Aligned_cols=37  Identities=14%  Similarity=0.120  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~  222 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ  222 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc
Confidence            4799999999999999999999999999999988654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=94.49  E-value=0.034  Score=56.62  Aligned_cols=38  Identities=26%  Similarity=0.235  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  212 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL  212 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc
Confidence            46999999999999999999999999999999987644

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.48  E-value=0.031  Score=53.46  Aligned_cols=37  Identities=24%  Similarity=0.329  Sum_probs=34.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      |.....|.|||+|..|...|..|+++|+ +|+++|++.
T Consensus         1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            1 MIERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            7767789999999999999999999998 999999985

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.45  E-value=0.032  Score=45.95  Aligned_cols=33  Identities=27%  Similarity=0.243  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|+|+|+|-.|..+|..|.+.|++|+++|++.
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999874

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=94.35  E-value=0.036  Score=52.21  Aligned_cols=36  Identities=25%  Similarity=0.152  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  179 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR  179 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC
Confidence            479999999999999999999999999999998874

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=94.31  E-value=0.042  Score=55.11  Aligned_cols=38  Identities=16%  Similarity=0.243  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+++...
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  186 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR  186 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            47999999999999999999999999999999987654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.29  E-value=0.035  Score=53.69  Aligned_cols=37  Identities=32%  Similarity=0.365  Sum_probs=31.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      |.+...|.|||+|..|...|..|+++|++|++++++.
T Consensus         1 mm~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            1 MIESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4445689999999999999999999999999999863

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=94.26  E-value=0.033  Score=53.85  Aligned_cols=36  Identities=11%  Similarity=0.049  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++++.+.
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~  202 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLN  202 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC-----
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCC
Confidence            369999999999999999999999999999987654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=94.25  E-value=0.047  Score=54.11  Aligned_cols=39  Identities=18%  Similarity=0.252  Sum_probs=35.2

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      ...|+|||+|..|+-+|..|++.|.+|+++|+.+++-.+
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~  181 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVR  181 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchh
Confidence            357999999999999999999999999999999887543

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.21  E-value=0.04  Score=52.73  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|--|.+.|..|+++|++|++++|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            469999999999999999999999999999976

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=94.19  E-value=0.038  Score=57.00  Aligned_cols=34  Identities=21%  Similarity=0.110  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       179 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            4799999999999999999999999999999876

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=94.15  E-value=0.04  Score=55.86  Aligned_cols=37  Identities=24%  Similarity=0.211  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  222 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR  222 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc
Confidence            4699999999999999999999999999999988653

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.15  E-value=0.026  Score=56.92  Aligned_cols=37  Identities=16%  Similarity=0.151  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  214 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP  214 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            4799999999999999999999999999999988754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.13  E-value=0.04  Score=56.20  Aligned_cols=37  Identities=16%  Similarity=0.179  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  213 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR  213 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc
Confidence            4699999999999999999999999999999988754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=94.12  E-value=0.04  Score=51.86  Aligned_cols=36  Identities=17%  Similarity=-0.038  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  180 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK  180 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC
Confidence            469999999999999999999999999999998873

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.05  E-value=0.037  Score=49.62  Aligned_cols=32  Identities=16%  Similarity=0.297  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|+|+|+|--|..+|..|.++|++|+++|++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999999999999999999999999999874

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=94.01  E-value=0.041  Score=52.42  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .+|.|||+|--|.+.|..|+++|++|++++|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            469999999999999999999999999999975

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=94.01  E-value=0.04  Score=55.21  Aligned_cols=37  Identities=22%  Similarity=0.224  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      ..++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~  184 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINK  184 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCST
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceeeeeeccccc
Confidence            4799999999999999999999999999999988653

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=93.98  E-value=0.053  Score=48.46  Aligned_cols=34  Identities=12%  Similarity=0.236  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|.|||+|.-|.+.|..|+++|++|++++++..
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4699999999999999999999999999999876

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=93.92  E-value=0.048  Score=50.95  Aligned_cols=33  Identities=24%  Similarity=0.217  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .|.|||+|.-|...|..|+++|++|++++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            589999999999999999999999999998864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=93.91  E-value=0.048  Score=51.90  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++.+.
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~  195 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR  195 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC
Confidence            479999999999999999999999999999998863

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=93.91  E-value=0.043  Score=56.69  Aligned_cols=35  Identities=17%  Similarity=0.242  Sum_probs=32.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       186 krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            46999999999999999999999999999998764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=93.90  E-value=0.052  Score=51.56  Aligned_cols=36  Identities=19%  Similarity=0.114  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++.+.
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  188 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR  188 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC
Confidence            469999999999999999999999999999998764

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=93.88  E-value=0.049  Score=54.90  Aligned_cols=37  Identities=19%  Similarity=0.205  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  211 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP  211 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc
Confidence            4699999999999999999999999999999988754

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=93.85  E-value=0.049  Score=54.90  Aligned_cols=37  Identities=22%  Similarity=0.256  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  213 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR  213 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC
Confidence            4699999999999999999999999999999987644

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=93.81  E-value=0.048  Score=55.33  Aligned_cols=33  Identities=18%  Similarity=0.361  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|.-|+..|..|+++|++|+++|++.
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            579999999999999999999999999999874

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=93.80  E-value=0.051  Score=51.32  Aligned_cols=36  Identities=22%  Similarity=0.132  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+.+.
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  181 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR  181 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc
Confidence            469999999999999999999999999999988763

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=93.80  E-value=0.051  Score=51.92  Aligned_cols=36  Identities=19%  Similarity=0.179  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~  191 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR  191 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC
Confidence            479999999999999999999999999999998763

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=93.78  E-value=0.059  Score=53.17  Aligned_cols=39  Identities=18%  Similarity=0.235  Sum_probs=35.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..+.
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~  181 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARV  181 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhc
Confidence            469999999999999999999999999999998876543

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=93.74  E-value=0.064  Score=53.12  Aligned_cols=39  Identities=18%  Similarity=0.194  Sum_probs=35.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      .-.|+|||+|..|+-+|..|++.|.+|+++|+.+++-.+
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~  190 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLAR  190 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhh
Confidence            357999999999999999999999999999999987554

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=93.73  E-value=0.042  Score=56.81  Aligned_cols=35  Identities=23%  Similarity=0.297  Sum_probs=32.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       192 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            46999999999999999999999999999998764

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=93.73  E-value=0.05  Score=54.93  Aligned_cols=37  Identities=16%  Similarity=0.045  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|.+|+-+|..|++.|.+|+++++++.+-+
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~  234 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMG  234 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCC
Confidence            4699999999999999999999999999999877533

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=93.72  E-value=0.052  Score=54.59  Aligned_cols=33  Identities=21%  Similarity=0.342  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|.-|+..|..|+++|++|+++|++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            469999999999999999999999999999985

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=93.67  E-value=0.059  Score=51.29  Aligned_cols=37  Identities=14%  Similarity=0.163  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+.+..
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~  189 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA  189 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc
Confidence            4699999999999999999999999999999987644

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=93.67  E-value=0.058  Score=54.29  Aligned_cols=34  Identities=24%  Similarity=0.220  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|.|||.|.+|+++|..|.+.|++|++.|+++.
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~   43 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF   43 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCG
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence            4799999999999999999999999999999864

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=93.65  E-value=0.049  Score=55.13  Aligned_cols=35  Identities=26%  Similarity=0.235  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhC-CC-eEEEEecCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVD-GL-KVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~-G~-~VlvlE~n~~   38 (445)
                      ...|.|||+|.-|+..|..|+++ |+ +|+++|++..
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            35799999999999999999999 99 9999999976

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=93.63  E-value=0.067  Score=51.30  Aligned_cols=37  Identities=16%  Similarity=0.386  Sum_probs=33.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      |....+|.|||+|-.|..+|..|+..|+ +|.++|.+.
T Consensus         1 m~~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            1 MAPKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            6556789999999999999999999998 999999875

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=93.59  E-value=0.054  Score=52.13  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=31.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      |. ...|.|||+|--|++.|..|+++|++|+++++++
T Consensus         1 M~-~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~   36 (335)
T 3ghy_A            1 MS-LTRICIVGAGAVGGYLGARLALAGEAINVLARGA   36 (335)
T ss_dssp             -C-CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHH
T ss_pred             CC-CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChH
Confidence            54 3579999999999999999999999999999853

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=93.50  E-value=0.071  Score=50.70  Aligned_cols=34  Identities=29%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|.|||+|.-|...|..|+++|++|+++|++..
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5799999999999999999999999999999864

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=93.49  E-value=0.056  Score=54.11  Aligned_cols=35  Identities=14%  Similarity=-0.014  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCe-EEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLK-VLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~n~~~   39 (445)
                      .+|+|||+|.+|+-+|..|++.|.+ |+++++++.+
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            4799999999999999999999999 9999998765

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=93.46  E-value=0.066  Score=55.31  Aligned_cols=37  Identities=16%  Similarity=0.106  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -+|+|||+|..|+-+|..|++.|.+|+++++.+++..
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  188 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT  188 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch
Confidence            3799999999999999999999999999999987654

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=93.43  E-value=0.064  Score=50.54  Aligned_cols=37  Identities=19%  Similarity=0.238  Sum_probs=31.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      |.....|.|||+|.-|...|..|++.|++|++++++.
T Consensus         1 M~~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            1 MEKSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             ---CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            6666789999999999999999999999999999874

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=93.33  E-value=0.068  Score=52.04  Aligned_cols=37  Identities=16%  Similarity=0.167  Sum_probs=32.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      |.+..+|.|||.|.-|...|..|+++|++|++++++.
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3345689999999999999999999999999999875

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=93.33  E-value=0.067  Score=54.28  Aligned_cols=35  Identities=29%  Similarity=0.302  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ...|.|||+|.-|...|..|+++|++|+++|++..
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            35799999999999999999999999999998853

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=93.31  E-value=0.066  Score=50.57  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|.-|...|..|+++|++|++++++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            369999999999999999999999999999864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=93.30  E-value=0.07  Score=51.90  Aligned_cols=33  Identities=27%  Similarity=0.279  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|.-|.+.|..|+++|++|+++++++
T Consensus        30 mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            579999999999999999999999999999874

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=93.30  E-value=0.066  Score=50.64  Aligned_cols=36  Identities=19%  Similarity=0.127  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~  191 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM  191 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC
Confidence            469999999999999999999999999999988764

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=93.30  E-value=0.08  Score=53.34  Aligned_cols=38  Identities=11%  Similarity=0.189  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+++...
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  210 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALIT  210 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCC
Confidence            46999999999999999999999999999999887654

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=93.29  E-value=0.082  Score=53.00  Aligned_cols=38  Identities=16%  Similarity=-0.007  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      -.++|||+|..|+-+|..|++.|.+|+++++.+++...
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  185 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK  185 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc
Confidence            46999999999999999999999999999999887543

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=93.28  E-value=0.067  Score=54.29  Aligned_cols=37  Identities=27%  Similarity=0.223  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  235 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG  235 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc
Confidence            4699999999999999999999999999999988754

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=93.27  E-value=0.071  Score=50.37  Aligned_cols=32  Identities=22%  Similarity=0.291  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|+-|...|..|+ +|++|+++|+++
T Consensus        13 ~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           13 MKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            57999999999999999999 999999999875

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=93.25  E-value=0.073  Score=51.25  Aligned_cols=33  Identities=18%  Similarity=0.268  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      ..|+|||+|-.|.++|..|++.|+ +|.++|.+.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            479999999999999999999998 999999985

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=93.25  E-value=0.073  Score=53.81  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      -.++|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  223 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL  223 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc
Confidence            469999999999999999999999999999998865

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=93.17  E-value=0.059  Score=54.01  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      ..|.|||.|.+|+++|..|++.|++|+..|.+...=
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~   41 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP   41 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCT
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcc
Confidence            469999999999999999999999999999987653

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=93.16  E-value=0.076  Score=53.27  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..+.|||+|.-|+..|..|+++|++|+++|++..
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5689999999999999999999999999999875

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=93.13  E-value=0.07  Score=53.62  Aligned_cols=34  Identities=18%  Similarity=0.316  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|.|||+|.-|...|..|+++|++|+++|++..
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            3599999999999999999999999999999876

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=93.00  E-value=0.069  Score=54.00  Aligned_cols=37  Identities=22%  Similarity=0.217  Sum_probs=33.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhC--CCeEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~   37 (445)
                      |.+...|.|||+|.-|+..|..|+++  |++|+++|++.
T Consensus         2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            55556899999999999999999999  89999999874

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=92.93  E-value=0.085  Score=50.02  Aligned_cols=37  Identities=24%  Similarity=0.308  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+.+..
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~  210 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA  210 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC
Confidence            4699999999999999999999999999999988654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=92.92  E-value=0.098  Score=47.89  Aligned_cols=33  Identities=30%  Similarity=0.379  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|.-|...|..|+++|++|++++++.
T Consensus        20 ~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           20 MKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            569999999999999999999999999999875

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=92.87  E-value=0.089  Score=50.56  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +..+.|||+|--|+..|..|+++|++|++++++.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3579999999999999999999999999999863

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=92.85  E-value=0.095  Score=52.87  Aligned_cols=37  Identities=19%  Similarity=0.157  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+++..
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  217 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP  217 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence            4699999999999999999999999999999987754

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=92.85  E-value=0.089  Score=50.73  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+.+.+
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~  200 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG  200 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC
Confidence            3699999999999999999999999999999987654

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=92.83  E-value=0.077  Score=53.13  Aligned_cols=32  Identities=25%  Similarity=0.504  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|.|||+|..|+..|..|+++|++|+++|++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999874

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=92.82  E-value=0.08  Score=53.47  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            359999999999999999999999999999875

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=92.75  E-value=0.064  Score=50.58  Aligned_cols=33  Identities=18%  Similarity=0.207  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|--|.+.|..|+++|++|++++|+.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            369999999999999999999999999999984

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=92.74  E-value=0.16  Score=50.91  Aligned_cols=37  Identities=19%  Similarity=0.095  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG   41 (445)
                      +||+|||+|++|++||..|++.  |++|+++|+++++|.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~   39 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISF   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCc
Confidence            5899999999999999999998  999999999998664

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=92.71  E-value=0.091  Score=49.23  Aligned_cols=33  Identities=18%  Similarity=0.223  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .|.|||+|.-|...|..|+++|++|++++++..
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            589999999999999999999999999999864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=92.69  E-value=0.098  Score=49.49  Aligned_cols=34  Identities=24%  Similarity=0.224  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ...|.|||+|.-|...|..|+++|++|+++|++.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999875

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=92.68  E-value=0.07  Score=53.54  Aligned_cols=36  Identities=11%  Similarity=0.073  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYY   39 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~   39 (445)
                      ...|+|||+|.+|+-+|..|++.  |.+|+++++++.+
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            45799999999999999999999  9999999998754

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=92.63  E-value=0.09  Score=54.81  Aligned_cols=32  Identities=25%  Similarity=0.245  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            36999999999999999999999999999987

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=92.51  E-value=0.12  Score=48.91  Aligned_cols=34  Identities=32%  Similarity=0.530  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ...|.|||.|.-|...|..|+++|++|+++|++.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999885

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=92.45  E-value=0.12  Score=48.99  Aligned_cols=35  Identities=29%  Similarity=0.224  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ...|.|||+|.-|...|..|++.|++|++++++..
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            35799999999999999999999999999998754

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=92.41  E-value=0.12  Score=53.73  Aligned_cols=38  Identities=16%  Similarity=0.156  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+++...
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  225 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP  225 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc
Confidence            46999999999999999999999999999999887654

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=92.40  E-value=0.11  Score=49.54  Aligned_cols=33  Identities=18%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      ..|+|||+|-.|...|..|+++|+  +|+++|++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            479999999999999999999999  999999974

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=92.37  E-value=0.07  Score=44.40  Aligned_cols=33  Identities=21%  Similarity=0.339  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|+|||+|..|...|..|++.|.+|++++++.
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            469999999999999999999999999999874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.29  E-value=0.079  Score=53.46  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|||+|+|-.|..+|..|+..|++|+++|++.
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            469999999999999999999999999999984

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=92.29  E-value=0.13  Score=45.96  Aligned_cols=33  Identities=33%  Similarity=0.302  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..+.|||+|..|...|..|+++|++|.+++++.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999874

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=92.29  E-value=0.12  Score=49.43  Aligned_cols=32  Identities=25%  Similarity=0.561  Sum_probs=29.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|--|.+.|..|+++|++|+++ +++
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            46999999999999999999999999999 664

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=92.23  E-value=0.091  Score=53.86  Aligned_cols=37  Identities=16%  Similarity=-0.032  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+.+..
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~  392 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA  392 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc
Confidence            4799999999999999999999999999999988753

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=92.20  E-value=0.091  Score=49.26  Aligned_cols=33  Identities=24%  Similarity=0.267  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .|.|||+|.-|...|..|+++|++|++++++..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            599999999999999999999999999999864

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=92.19  E-value=0.12  Score=50.93  Aligned_cols=34  Identities=18%  Similarity=0.143  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      -.|+|||+|..|+.+|..|...|.+|+++|++..
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4799999999999999999999999999999864

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=92.18  E-value=0.35  Score=50.26  Aligned_cols=39  Identities=23%  Similarity=0.339  Sum_probs=37.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhC------CCeEEEEecCCCCCCc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVD------GLKVLHMDRNAYYGGE   42 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~------G~~VlvlE~n~~~GG~   42 (445)
                      +|||||||||++||++|..|++.      |.+|+|+||++.+|+.
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~   79 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   79 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCc
Confidence            48999999999999999999999      9999999999999875

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=92.18  E-value=0.083  Score=50.05  Aligned_cols=36  Identities=25%  Similarity=0.442  Sum_probs=30.2

Q ss_pred             CCCc-ccEEEECCChhHHHHHHHhhhC-----C-CeEEEEecC
Q 036458            1 MDED-YDVIVLGTGLKECILSGVLSVD-----G-LKVLHMDRN   36 (445)
Q Consensus         1 m~~~-~DViIIGaGl~Gl~aA~~La~~-----G-~~VlvlE~n   36 (445)
                      |++. ..|.|||+|.-|...|..|+++     | ++|+++++.
T Consensus         4 m~~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r~   46 (317)
T 2qyt_A            4 MNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIARG   46 (317)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECCH
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEcH
Confidence            4544 4799999999999999999999     9 999999874

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=92.10  E-value=0.11  Score=49.08  Aligned_cols=36  Identities=25%  Similarity=0.375  Sum_probs=28.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      |.+  +|.+||-|.-|...|..|.++|++|+++|++..
T Consensus         4 Ms~--kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            4 MSE--KIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             CCC--EEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             CCC--cEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            554  599999999999999999999999999998764

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=92.10  E-value=0.14  Score=45.47  Aligned_cols=32  Identities=28%  Similarity=0.223  Sum_probs=29.8

Q ss_pred             cEEEEC-CChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLG-TGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|.||| +|..|...|..|+++|++|.+++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            489999 99999999999999999999999874

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=92.07  E-value=0.11  Score=51.81  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..+.|||.|.-||.+|..||++|++|+.+|-+.
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            479999999999999999999999999999875

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=92.06  E-value=0.12  Score=48.43  Aligned_cols=37  Identities=24%  Similarity=0.214  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++..
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~  191 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA  191 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc
Confidence            4699999999999999999999999999999988765

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=92.04  E-value=0.13  Score=49.39  Aligned_cols=33  Identities=18%  Similarity=0.273  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      ..|.|||+|..|..+|..|++.|+ +|.++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            479999999999999999999999 999999985

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=91.95  E-value=0.14  Score=48.99  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            369999999999999999999999999999885

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=91.91  E-value=0.16  Score=48.56  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHH-HHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECI-LSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~-aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|.|||.|-+|++ +|..|.+.|++|++.|+++.
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            46999999999996 78899999999999999875

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=91.90  E-value=0.13  Score=51.27  Aligned_cols=33  Identities=15%  Similarity=0.170  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|.|||+|.-|+..|..|++ |++|+++|++..
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            479999999999999999998 999999998753

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=91.90  E-value=0.11  Score=49.72  Aligned_cols=30  Identities=30%  Similarity=0.232  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEec
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDR   35 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~   35 (445)
                      .|.|||+|.-|...|..|+++|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            489999999999999999999999999999

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=91.84  E-value=0.13  Score=52.91  Aligned_cols=36  Identities=22%  Similarity=0.185  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      -.++|||+|..||-.|..+++-|.+|++++++..+-
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~  259 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLR  259 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSST
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCeEEEeccccccc
Confidence            469999999999999999999999999999876553

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=91.84  E-value=0.091  Score=51.11  Aligned_cols=32  Identities=28%  Similarity=0.268  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|.|||+|.-|...|..|+++|++|++++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999874

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=91.83  E-value=0.14  Score=48.62  Aligned_cols=32  Identities=28%  Similarity=0.409  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      .|+|||+|..|...|..|+.+|+  +|.++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            58999999999999999999999  999999985

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=91.77  E-value=0.14  Score=48.33  Aligned_cols=33  Identities=18%  Similarity=0.464  Sum_probs=30.9

Q ss_pred             cEEEEC-CChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLG-TGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .|.||| +|.-|.+.|..|+++|++|++++++..
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            699999 999999999999999999999998764

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=91.74  E-value=0.17  Score=48.31  Aligned_cols=34  Identities=24%  Similarity=0.307  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      ...|.|||+|..|..+|..|+..|+ +|.++|.++
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~   42 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQ   42 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            3579999999999999999999999 999999983

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=91.74  E-value=0.15  Score=48.46  Aligned_cols=32  Identities=19%  Similarity=0.123  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .++.|||+|--|.+.|..|+ +|++|++++|+.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            46999999999999999999 999999999875

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=91.74  E-value=0.41  Score=49.52  Aligned_cols=42  Identities=24%  Similarity=0.404  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      .++||+|||+|++||++|..|++.|++|+++|+++.+||...
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~  166 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK  166 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchh
Confidence            358999999999999999999999999999999999998753

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=91.73  E-value=0.15  Score=47.80  Aligned_cols=33  Identities=12%  Similarity=0.192  Sum_probs=30.7

Q ss_pred             ccEEEECC-ChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGT-GLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+ |.-|...|..|+++|++|++++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            37999999 9999999999999999999999874

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=91.71  E-value=0.11  Score=48.48  Aligned_cols=35  Identities=17%  Similarity=0.147  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ...|+|||+|-.|+..|..|.+.|.+|+|++.+..
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~   47 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH   47 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            45799999999999999999999999999998754

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=91.67  E-value=0.17  Score=51.22  Aligned_cols=34  Identities=24%  Similarity=0.215  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      -.++|||+|..|+-+|..|++.|.+|+++++...
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  219 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSIP  219 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcc
Confidence            3699999999999999999999999999998653

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=91.63  E-value=0.15  Score=47.70  Aligned_cols=35  Identities=23%  Similarity=0.162  Sum_probs=33.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            46999999999999999999999999999999887

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=91.63  E-value=0.13  Score=51.18  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      +..|||.|.-|+..|..|+++|++|+++|++..
T Consensus        13 ~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           13 KLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            578999999999999999999999999999853

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=91.61  E-value=0.49  Score=40.42  Aligned_cols=55  Identities=20%  Similarity=0.186  Sum_probs=43.3

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCCCc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~p~  290 (445)
                      .++.+.+.+.++..|.+++++ +|++|..+ ++. ..+.. +| +++||.||.+.+..|.
T Consensus        56 ~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~-~~~-~~v~~~~g-~i~ad~vI~A~G~~~~  111 (180)
T 2ywl_A           56 EELLRRLEAHARRYGAEVRPG-VVKGVRDM-GGV-FEVETEEG-VEKAERLLLCTHKDPT  111 (180)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CCCEEEEC-SSS-EEEECSSC-EEEEEEEEECCTTCCH
T ss_pred             HHHHHHHHHHHHHcCCEEEeC-EEEEEEEc-CCE-EEEEECCC-EEEECEEEECCCCCCC
Confidence            467778888888899999999 99999874 444 34554 55 8999999999887763

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=91.56  E-value=0.13  Score=50.85  Aligned_cols=31  Identities=26%  Similarity=0.250  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|.|||+|.-|+..|..|++ |++|+++|++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            58999999999999999999 99999999874

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=91.53  E-value=0.14  Score=51.67  Aligned_cols=37  Identities=11%  Similarity=0.120  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhC-CCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVD-GLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~n~~~GG   41 (445)
                      .+++|||+|..|+-+|..|++. |.+|+++|+.+++..
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~  197 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMP  197 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccc
Confidence            5799999999999999999999 999999999987654

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=91.53  E-value=0.17  Score=47.82  Aligned_cols=38  Identities=18%  Similarity=0.155  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+++.+.
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~  192 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAH  192 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSC
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCcc
Confidence            46999999999999999999999999999999887543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=91.48  E-value=0.18  Score=51.52  Aligned_cols=32  Identities=28%  Similarity=0.300  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      -.++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            35999999999999999999999999999985

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=91.46  E-value=0.13  Score=50.30  Aligned_cols=33  Identities=21%  Similarity=0.185  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      -.|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999885

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=91.46  E-value=0.088  Score=47.34  Aligned_cols=33  Identities=12%  Similarity=0.227  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEE-EecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLH-MDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~Vlv-lE~n~   37 (445)
                      ..|.|||+|.-|...|..|+++|++|++ ++++.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            4799999999999999999999999999 88874

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=91.38  E-value=0.15  Score=45.56  Aligned_cols=38  Identities=18%  Similarity=0.316  Sum_probs=32.2

Q ss_pred             CCCcccEEEEC-CChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            1 MDEDYDVIVLG-TGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      |.....|+|.| +|..|..++..|.++|++|.++.|+..
T Consensus         1 M~~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (227)
T 3dhn_A            1 MEKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE   39 (227)
T ss_dssp             --CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            66556799999 599999999999999999999999843

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=91.34  E-value=0.14  Score=48.80  Aligned_cols=33  Identities=15%  Similarity=0.173  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCC-CeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~   37 (445)
                      ..|.|||+|.-|...|..|+++| ++|+++|++.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            46999999999999999999999 9999999985

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=91.33  E-value=0.16  Score=48.56  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHhhhCC----CeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDG----LKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G----~~VlvlE~n~   37 (445)
                      ...|.|||+|.-|...|..|+++|    ++|++++++.
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            457999999999999999999999    8999999875

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=91.27  E-value=0.2  Score=45.17  Aligned_cols=33  Identities=15%  Similarity=0.148  Sum_probs=30.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      ...|+|||+|-.|...|..|.++|.+|+|++.+
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            457999999999999999999999999999875

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=91.23  E-value=0.1  Score=47.22  Aligned_cols=34  Identities=9%  Similarity=0.006  Sum_probs=30.3

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .-.++|+|+|-.|..+|..|.+.|+ |+++|++..
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            3469999999999999999999999 999998753

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=91.22  E-value=0.19  Score=49.95  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      +-.|||||.|-.|..+|..|.+.|++|+++|++..
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            34699999999999999999999999999999853

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=91.14  E-value=0.47  Score=48.17  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHhhh---CCCeEEEEecCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSV---DGLKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~---~G~~VlvlE~n~~   38 (445)
                      .+||||||||++|+++|+.|++   .|.+|+|+|+.+.
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            3799999999999999999999   9999999999864

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=91.14  E-value=0.35  Score=48.98  Aligned_cols=43  Identities=23%  Similarity=0.327  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHhhh-CCCeEEEEe--------cCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSV-DGLKVLHMD--------RNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~-~G~~VlvlE--------~n~~~GG~~~s   45 (445)
                      .+|||+|||||.+|++||..|++ .|++|+++|        +++.+||.|..
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~   53 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVN   53 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHH
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccC
Confidence            46999999999999999999999 999999999        47789997753

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=91.13  E-value=0.33  Score=49.24  Aligned_cols=41  Identities=20%  Similarity=0.256  Sum_probs=38.1

Q ss_pred             cccEEEECCChhHHHHHHHhhhC---CCeEEEEecCCCCCCcccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVD---GLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~---G~~VlvlE~n~~~GG~~~s   45 (445)
                      +|||||||||++|++||..|++.   |++|+++|+++ +||.+..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~   45 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVL   45 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccC
Confidence            48999999999999999999999   99999999999 9997653

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=91.05  E-value=0.19  Score=47.75  Aligned_cols=32  Identities=16%  Similarity=0.191  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHhhhC--CCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVD--GLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~   37 (445)
                      .|.|||+|..|...|..|++.  |++|+++|++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            589999999999999999985  79999999985

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=91.02  E-value=0.16  Score=48.36  Aligned_cols=32  Identities=16%  Similarity=0.207  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRN   36 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n   36 (445)
                      ..|.|||+|.-|...|..|+++|+ +|+++|++
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            479999999999999999999999 99999997

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=90.92  E-value=0.18  Score=50.68  Aligned_cols=35  Identities=23%  Similarity=0.139  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~~   39 (445)
                      .+|+|||+|.+|+-+|..|.+.|. +|+++++++..
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            469999999999999999999997 69999998865

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=90.88  E-value=0.4  Score=48.66  Aligned_cols=45  Identities=24%  Similarity=0.340  Sum_probs=40.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhh-CCCeEEEEe--------cCCCCCCcccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSV-DGLKVLHMD--------RNAYYGGESTS   45 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~-~G~~VlvlE--------~n~~~GG~~~s   45 (445)
                      |..+|||+|||||.+|++||..|++ .|++|+++|        +++.+||.|..
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~   57 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVN   57 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHH
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeec
Confidence            7778999999999999999999999 999999999        47789997753

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=90.87  E-value=0.19  Score=50.92  Aligned_cols=34  Identities=18%  Similarity=0.192  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +.+|.|||+|.-|...|..|+++|++|++++++.
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4689999999999999999999999999999873

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=90.86  E-value=0.5  Score=48.58  Aligned_cols=38  Identities=11%  Similarity=0.204  Sum_probs=34.5

Q ss_pred             CC-CcccEEEECCChhHHHHHHHhhh---CCCeEEEEecCCC
Q 036458            1 MD-EDYDVIVLGTGLKECILSGVLSV---DGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~-~~~DViIIGaGl~Gl~aA~~La~---~G~~VlvlE~n~~   38 (445)
                      |+ ..+||||||||++|+++|..|++   .|.+|+|+|+.+.
T Consensus        21 M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           21 MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            53 46899999999999999999999   9999999999764

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=90.83  E-value=0.36  Score=48.76  Aligned_cols=42  Identities=21%  Similarity=0.321  Sum_probs=38.8

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      .+|||+|||||++||+||..|++.|++|+++|+ +.+||.|..
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~   66 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVI   66 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceec
Confidence            369999999999999999999999999999999 789997754

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=90.75  E-value=0.2  Score=48.31  Aligned_cols=33  Identities=27%  Similarity=0.277  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      -.|.|||.|.-|.+.|..|.++|++|+++|++.
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999986

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=90.71  E-value=0.2  Score=46.32  Aligned_cols=33  Identities=9%  Similarity=-0.045  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|+|||+|..|+-+|..|++.| +|+++++.+.
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            47999999999999999999999 9999998776

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=90.68  E-value=0.18  Score=53.83  Aligned_cols=32  Identities=22%  Similarity=0.346  Sum_probs=30.6

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|.|||+|.-|...|..|+++|++|+++|++.
T Consensus       314 kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          314 KVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             EEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            59999999999999999999999999999985

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=90.67  E-value=0.26  Score=45.68  Aligned_cols=37  Identities=24%  Similarity=0.308  Sum_probs=32.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      |.. ..|+|.|||.-|..++..|.++|++|+.+.|+..
T Consensus         1 M~~-~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            1 MSL-SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             -CC-CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCC-CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            443 4799999999999999999999999999998754

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=90.65  E-value=0.19  Score=46.21  Aligned_cols=37  Identities=11%  Similarity=0.144  Sum_probs=32.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCC----CeEEEEecCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDG----LKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G----~~VlvlE~n~~   38 (445)
                      |. ...|.|||+|.-|...|..|+++|    ++|.+++++..
T Consensus         2 m~-~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            2 ME-NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             CS-SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CC-CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            44 357999999999999999999999    79999998865

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=90.63  E-value=0.46  Score=49.36  Aligned_cols=41  Identities=15%  Similarity=0.205  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      .++||||||+|++||+||..|+++|.+|+|+||++..||..
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s   46 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            35899999999999999999999999999999998876644

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=90.59  E-value=0.22  Score=47.50  Aligned_cols=33  Identities=24%  Similarity=0.443  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      ..|.|||+|.-|...|..|+++|+  +|+++|++.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            469999999999999999999999  999999986

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=90.56  E-value=0.26  Score=49.82  Aligned_cols=33  Identities=24%  Similarity=0.236  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      -.++|||+|..|+-+|..|++.|.+|+++++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  220 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI  220 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            369999999999999999999999999999853

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=90.51  E-value=0.22  Score=46.64  Aligned_cols=32  Identities=19%  Similarity=0.142  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|.|||+|.-|...|..|+++|++|++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999999999999875

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=90.50  E-value=0.22  Score=46.16  Aligned_cols=32  Identities=28%  Similarity=0.412  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|.|||+|.-|...|..|++.|++|++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999999999999999999999874

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=90.48  E-value=0.25  Score=47.15  Aligned_cols=34  Identities=12%  Similarity=0.210  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      ..+|+|||+|-.|.++|..|+..|.  +|.++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999998  999999874

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=90.45  E-value=0.11  Score=47.20  Aligned_cols=33  Identities=15%  Similarity=0.122  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|.-|.+.|..|+++|++|+.+++..
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~~   39 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAPE   39 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHTTCEEEECSSGG
T ss_pred             cEEEEEeeCHHHHHHHHHHHHCCCEEEEecCHH
Confidence            479999999999999999999999999999853

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=90.45  E-value=0.19  Score=46.13  Aligned_cols=32  Identities=28%  Similarity=0.459  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHhhhCC-CeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG-LKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~   37 (445)
                      .|.|||+|.-|...|..|+++| ++|.+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            4899999999999999999999 9999999874

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=90.41  E-value=0.24  Score=50.02  Aligned_cols=36  Identities=19%  Similarity=0.186  Sum_probs=32.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      |. +.+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         3 m~-~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            3 MA-QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             CT-TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CC-CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            54 3689999999999999999999999999999863

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=90.40  E-value=0.34  Score=49.21  Aligned_cols=40  Identities=25%  Similarity=0.354  Sum_probs=35.3

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      .+++||+|||||++|+++|+.|+++|++|+|+||++..+|
T Consensus         1 M~~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~g   40 (501)
T 2qcu_A            1 METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACA   40 (501)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCC
Confidence            0369999999999999999999999999999999985544

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=90.40  E-value=0.18  Score=51.10  Aligned_cols=33  Identities=18%  Similarity=0.279  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhC--CCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~   37 (445)
                      ..|.|||+|.-|+..|..|+++  |++|+++|++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            3799999999999999999999  79999999863

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=90.39  E-value=0.14  Score=49.49  Aligned_cols=34  Identities=12%  Similarity=0.120  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCC-------CeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDG-------LKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G-------~~VlvlE~n~~   38 (445)
                      ..|.|||+|.-|...|..|+++|       ++|++++++..
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            47999999999999999999999       99999999876

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=90.27  E-value=0.39  Score=48.15  Aligned_cols=56  Identities=18%  Similarity=0.195  Sum_probs=44.2

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-e-CCeEEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-S-EGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~-~g~~~~ad~VI~~~~~~p  289 (445)
                      .++.+.+.+.++..|.+++++++|++|..++++. ..|. . +|+ +.||.||.+.+..|
T Consensus       211 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~~g~-i~aD~Vv~a~G~~p  268 (463)
T 4dna_A          211 QDMRRGLHAAMEEKGIRILCEDIIQSVSADADGR-RVATTMKHGE-IVADQVMLALGRMP  268 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSC-EEEEESSSCE-EEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCE-EEEEEcCCCe-EEeCEEEEeeCccc
Confidence            4677888888899999999999999998743443 3455 4 666 99999999887654

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=90.25  E-value=0.25  Score=45.86  Aligned_cols=33  Identities=15%  Similarity=0.084  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|+|+|+|-.|..+|..|++.|.+|++++|+.
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            469999999999999999999999999998873

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=90.21  E-value=0.43  Score=48.76  Aligned_cols=59  Identities=17%  Similarity=0.160  Sum_probs=46.2

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcE--EEEEe-CCe-EEEcCEEEECCCCCCc
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKV--IGVTS-EGE-TAKCKKVVCDPSYLPD  290 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~--~~v~~-~g~-~~~ad~VI~~~~~~p~  290 (445)
                      .++.+.+.+.++..|.+++++++|++|..++++++  +.|.. +|+ ++.||.||.+.+..|.
T Consensus       255 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~  317 (523)
T 1mo9_A          255 NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPR  317 (523)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEEC
T ss_pred             HHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccC
Confidence            36778888888999999999999999987435543  33444 666 8999999999887764

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=90.13  E-value=0.26  Score=50.18  Aligned_cols=33  Identities=18%  Similarity=0.130  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|.-|...|..|+++|++|++++++.
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999875

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=90.02  E-value=0.28  Score=49.67  Aligned_cols=34  Identities=18%  Similarity=0.241  Sum_probs=31.9

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..+|.|||.|.-|...|..|+++|++|++++++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4589999999999999999999999999999985

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=89.96  E-value=0.24  Score=48.87  Aligned_cols=34  Identities=24%  Similarity=0.282  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      -.|+|||+|..|+.+|..|...|.+|+++|++..
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4699999999999999999999999999998753

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=89.96  E-value=0.62  Score=41.88  Aligned_cols=56  Identities=18%  Similarity=0.167  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHHHc-CcEEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~-Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~p  289 (445)
                      .++.+.+.+.++.. |.+++ +++|++|..+ ++++.+|.+ +|+++.||.||.+.+.++
T Consensus        68 ~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~-~~~v~~v~~~~g~~i~a~~VV~A~G~~s  125 (232)
T 2cul_A           68 WAFHARAKYLLEGLRPLHLF-QATATGLLLE-GNRVVGVRTWEGPPARGEKVVLAVGSFL  125 (232)
T ss_dssp             HHHHHHHHHHHHTCTTEEEE-ECCEEEEEEE-TTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             HHHHHHHHHHHHcCCCcEEE-EeEEEEEEEe-CCEEEEEEECCCCEEECCEEEECCCCCh
Confidence            35667777777776 77887 6899999874 666666764 677899999999988764

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=89.90  E-value=0.36  Score=41.95  Aligned_cols=36  Identities=17%  Similarity=0.231  Sum_probs=31.8

Q ss_pred             CCCcccEEEECC-ChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            1 MDEDYDVIVLGT-GLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      |.. ..|+|.|+ |..|..++..|.++|++|.++.|+.
T Consensus         1 M~~-~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            1 MAV-KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CCC-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCC-CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            543 46999998 9999999999999999999999875

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=89.89  E-value=0.26  Score=46.19  Aligned_cols=33  Identities=27%  Similarity=0.317  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|..|...|..|++.|++|.+++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            369999999999999999999999999999874

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=89.85  E-value=0.56  Score=46.82  Aligned_cols=56  Identities=25%  Similarity=0.167  Sum_probs=44.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE--e--CCe--EEEcCEEEECCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT--S--EGE--TAKCKKVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~--~--~g~--~~~ad~VI~~~~~~  288 (445)
                      ..+.+.|.+.++..|++++++++|++|..+ ++++++|+  .  +|+  +++||.||.+.+..
T Consensus       100 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~  161 (453)
T 3atr_A          100 PLYNQRVLKEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTNEELTVYSKVVVEATGYS  161 (453)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHcCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCceEEEEcCEEEECcCCc
Confidence            357788888888889999999999999884 66676554  2  665  79999999987644

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=89.82  E-value=0.18  Score=49.71  Aligned_cols=30  Identities=33%  Similarity=0.440  Sum_probs=27.9

Q ss_pred             ccEEEECCChhHHHHHHHhhh-CCCeEEEEe
Q 036458            5 YDVIVLGTGLKECILSGVLSV-DGLKVLHMD   34 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~-~G~~VlvlE   34 (445)
                      ..|.|||+|.-|++.|..|++ +|++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            369999999999999999998 599999999

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=89.82  E-value=0.22  Score=47.47  Aligned_cols=32  Identities=16%  Similarity=0.278  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      .|.|||+|-.|.+.|..|+++|+  +|+++|++.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            58999999999999999999999  999999874

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=89.82  E-value=0.18  Score=49.26  Aligned_cols=33  Identities=21%  Similarity=0.344  Sum_probs=31.0

Q ss_pred             cEEEECCChhHHHHHHHhhhCC-------CeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG-------LKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G-------~~VlvlE~n~~   38 (445)
                      .|.|||+|.-|.+.|..|+++|       ++|++++++..
T Consensus        23 kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            6999999999999999999999       99999998765

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=89.77  E-value=0.28  Score=49.66  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999874

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=89.76  E-value=0.25  Score=45.56  Aligned_cols=33  Identities=21%  Similarity=0.354  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCe-EEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLK-VLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~n~   37 (445)
                      ..|.|||+|.-|...|..|+++|++ |.+++++.
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            4799999999999999999999999 99999874

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=89.64  E-value=0.3  Score=46.35  Aligned_cols=33  Identities=15%  Similarity=0.300  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      ..|.|||+|-.|..+|..|+..|+ +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            469999999999999999999997 999999875

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=89.59  E-value=0.3  Score=45.41  Aligned_cols=32  Identities=25%  Similarity=0.475  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      .|.|||+|.-|...|..|+++|+  +|+++|++.
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            58999999999999999999999  999999875

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=89.56  E-value=0.25  Score=45.33  Aligned_cols=33  Identities=24%  Similarity=0.423  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      ..|+|||+|=.|+.+|..|++.|. +++++|+..
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            479999999999999999999996 899999874

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=89.56  E-value=0.21  Score=53.21  Aligned_cols=33  Identities=24%  Similarity=0.259  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            369999999999999999999999999999985

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=89.53  E-value=0.33  Score=44.85  Aligned_cols=33  Identities=24%  Similarity=0.474  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|+|.|||.-|..++..|.++|++|+.+.|+.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            369999999999999999999999999999875

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=89.53  E-value=0.3  Score=46.77  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      ...|.|||+|..|.++|..|+..|.  +|.++|.+.
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            4579999999999999999999997  999999863

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=89.52  E-value=0.27  Score=49.43  Aligned_cols=35  Identities=17%  Similarity=0.212  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHhh--------------------hCCC-eEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLS--------------------VDGL-KVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La--------------------~~G~-~VlvlE~n~~~   39 (445)
                      -.|+|||+|..|+-+|..|+                    +.|. +|+++++++..
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            47999999999999999999                    6786 79999988653

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=89.50  E-value=0.24  Score=46.93  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHhhhCC--CeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG--LKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~   37 (445)
                      .|.|||+|-.|...|..|+++|  ++|+++|++.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            6999999999999999999999  7999999974

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=89.47  E-value=0.44  Score=48.27  Aligned_cols=40  Identities=13%  Similarity=0.235  Sum_probs=36.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYG   40 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~G   40 (445)
                      |..++||||||+|++|++||..|.++  |.+|+++|++++.|
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            45679999999999999999999887  89999999998875

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=89.42  E-value=0.33  Score=45.06  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|+|||+|-+|.++|..|++.|.+|+|+.|+.
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999998874

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=89.39  E-value=0.31  Score=47.82  Aligned_cols=33  Identities=24%  Similarity=0.242  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      -.|+|+|+|..|+.+|..|...|.+|+++|++.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999885

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=89.34  E-value=0.29  Score=49.53  Aligned_cols=32  Identities=31%  Similarity=0.395  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +|.|||+|.-|...|..|+++|++|++++++.
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=89.28  E-value=0.33  Score=47.13  Aligned_cols=33  Identities=24%  Similarity=0.239  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      -.|+|+|+|-.|+.++..|...|.+|++++++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            469999999999999999999999999999874

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=89.27  E-value=0.29  Score=45.51  Aligned_cols=31  Identities=23%  Similarity=0.319  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|.|||+|.-|...|..|++ |++|++++++.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            59999999999999999999 99999999875

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=89.26  E-value=0.33  Score=44.45  Aligned_cols=33  Identities=9%  Similarity=0.116  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|.-|...|..|++.|++|.+++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            479999999999999999999999999999874

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=89.24  E-value=0.31  Score=47.63  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      +-.|+|+|+|-+|+.+|..|...|. +|+++|++.
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4579999999999999999999998 999999995

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=89.16  E-value=0.21  Score=49.15  Aligned_cols=39  Identities=21%  Similarity=0.315  Sum_probs=35.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCCc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGGE   42 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG~   42 (445)
                      ++||+|||+|++||++|+.|+++  |++|+|+|+++..+|.
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~   76 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEE   76 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTT
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcc
Confidence            58999999999999999999999  9999999998766554

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=89.16  E-value=0.29  Score=52.31  Aligned_cols=36  Identities=19%  Similarity=0.169  Sum_probs=32.9

Q ss_pred             ccEEEEC--CChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLG--TGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIG--aGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||  +|..|+-+|..|++.|.+|+++++.+ +..
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~  566 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LAN  566 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTH
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccc
Confidence            4799999  99999999999999999999999998 654

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=89.11  E-value=0.28  Score=45.59  Aligned_cols=33  Identities=18%  Similarity=0.131  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|+|+|+|-.|..+|..|++.|.+|+++.|+.
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            469999999999999999999999999999874

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=89.04  E-value=0.37  Score=46.61  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .|+|||+|..|..+|.++.+.|++|+++|.++.
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            499999999999999999999999999998754

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=89.03  E-value=0.39  Score=45.90  Aligned_cols=33  Identities=18%  Similarity=0.361  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      .+|.|||+|-.|.++|..|+..|+ +|.++|.+.
T Consensus         8 ~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            8 NKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            579999999999999999999999 999999986

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=88.96  E-value=0.36  Score=47.02  Aligned_cols=33  Identities=24%  Similarity=0.249  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|+|+|+|-.|+.+|..|+..|.+|+++|++.
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999875

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=88.95  E-value=0.42  Score=42.08  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=29.5

Q ss_pred             cEEEEC-CChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLG-TGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|+|.| +|..|..++..|+++|++|+++.|+.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            489999 59999999999999999999999974

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=88.88  E-value=0.22  Score=54.96  Aligned_cols=38  Identities=18%  Similarity=0.081  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~  322 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSISAA  322 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCHH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccchh
Confidence            46999999999999999999999999999999987643

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=88.83  E-value=0.36  Score=46.42  Aligned_cols=33  Identities=21%  Similarity=0.194  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|.-|.+.|..|++.|++|++.+++.
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            359999999999999999999999999999875

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=88.63  E-value=0.44  Score=44.46  Aligned_cols=36  Identities=17%  Similarity=0.275  Sum_probs=31.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCC---eEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGL---KVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~---~VlvlE~n~   37 (445)
                      |. ...|.|||+|.-|.+.|..|+++|+   +|+++|++.
T Consensus         1 M~-~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            1 MN-TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             -C-CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CC-CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            43 3579999999999999999999999   999999985

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=88.55  E-value=0.36  Score=47.02  Aligned_cols=33  Identities=27%  Similarity=0.376  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCC-eEEEEecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRN   36 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n   36 (445)
                      +-.|+|+|+|-+|..+|..|...|. +|+++|++
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            4579999999999999999999997 89999998

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=88.52  E-value=0.29  Score=52.22  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      -.|.|||+|..|...|..++++|++|+++|.++.
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~  350 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPK  350 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHh
Confidence            3699999999999999999999999999998753

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=88.50  E-value=0.36  Score=46.07  Aligned_cols=37  Identities=16%  Similarity=0.298  Sum_probs=33.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      |.+..+|+|||+|-.|.++|..|+..|.  .+.++|.+.
T Consensus         2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~   40 (318)
T 1ez4_A            2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (318)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            6667899999999999999999999887  899999863

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=88.45  E-value=0.89  Score=46.48  Aligned_cols=39  Identities=10%  Similarity=0.166  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhh---CCCeEEEEecCCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSV---DGLKVLHMDRNAYY   39 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~---~G~~VlvlE~n~~~   39 (445)
                      |...+||||||||++|+++|+.|++   .|.+|+|+|+.+..
T Consensus         2 ~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~   43 (538)
T 2aqj_A            2 NKPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIP   43 (538)
T ss_dssp             CCBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSC
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCC
Confidence            1456999999999999999999999   99999999997654

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=88.21  E-value=0.47  Score=43.23  Aligned_cols=33  Identities=15%  Similarity=0.249  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC----eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL----KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~----~VlvlE~n~   37 (445)
                      ..|.|||+|.-|...|..|+++|+    +|.+++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            469999999999999999999998    999999974

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=88.18  E-value=0.43  Score=45.03  Aligned_cols=33  Identities=15%  Similarity=0.138  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      ..|+|||+|-.|..+|..|++.|. +|+++.|+.
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            469999999999999999999997 999998873

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=88.10  E-value=0.48  Score=44.23  Aligned_cols=38  Identities=13%  Similarity=0.167  Sum_probs=32.4

Q ss_pred             CCCcccEEEECC-ChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            1 MDEDYDVIVLGT-GLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      |.+...|+|.|| |.-|..++..|.++|++|.++.|+..
T Consensus         1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   39 (308)
T 1qyc_A            1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   39 (308)
T ss_dssp             -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcc
Confidence            654557999996 99999999999999999999998753

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=88.09  E-value=0.4  Score=50.81  Aligned_cols=39  Identities=15%  Similarity=0.138  Sum_probs=35.1

Q ss_pred             ccEEEEC--CChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            5 YDVIVLG--TGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         5 ~DViIIG--aGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      -+|+|||  +|..|+-+|..|++.|.+|+++++.+.+....
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~  564 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWT  564 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGG
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccc
Confidence            3599999  99999999999999999999999998876543

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=88.07  E-value=1.1  Score=43.43  Aligned_cols=58  Identities=12%  Similarity=0.171  Sum_probs=43.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCe--EEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGE--TAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~--~~~ad~VI~~~~~~p  289 (445)
                      .++.+.|.+.+...|++++++++|++|..++++.+.... .+|+  +++||.||.+.+...
T Consensus       103 ~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S  163 (394)
T 1k0i_A          103 TEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHG  163 (394)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCc
Confidence            467778888887789999999999999874233333222 5777  799999999877654

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=87.95  E-value=0.55  Score=44.58  Aligned_cols=38  Identities=21%  Similarity=0.222  Sum_probs=33.4

Q ss_pred             CCCcccEEEEC-CChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            1 MDEDYDVIVLG-TGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      |.....|+|.| +|.-|..+|..|+++|++|.+++++..
T Consensus         2 M~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~   40 (341)
T 3enk_A            2 MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVN   40 (341)
T ss_dssp             CCSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CCCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCc
Confidence            66666799998 599999999999999999999998764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=87.89  E-value=0.52  Score=42.26  Aligned_cols=33  Identities=30%  Similarity=0.363  Sum_probs=30.4

Q ss_pred             ccEEEECC-ChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGT-GLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|+|.|+ |.-|..+|..|.++|++|+++.|+.
T Consensus        22 ~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           22 MRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            46999997 9999999999999999999999874

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=87.89  E-value=0.38  Score=44.79  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|+|||+|-.|.+.|..|++.|.+|++++++.
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            469999999999999999999999999999873

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=87.88  E-value=0.47  Score=45.14  Aligned_cols=32  Identities=28%  Similarity=0.381  Sum_probs=28.4

Q ss_pred             ccEEEECCC-hhHHHHHHHhhhCCCeEEEEecC
Q 036458            5 YDVIVLGTG-LKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         5 ~DViIIGaG-l~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      ..|+|||+| +.|..+|..|...|.+|++++++
T Consensus       178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            469999999 67999999999999999988665

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=87.77  E-value=0.41  Score=43.97  Aligned_cols=30  Identities=23%  Similarity=0.230  Sum_probs=28.2

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEec
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDR   35 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~   35 (445)
                      .|.|||+|.-|...|..|+++|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            489999999999999999999999999876

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=87.73  E-value=0.48  Score=46.29  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|+|||+|-.|+.+|..|...|.+|+++|++.
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            469999999999999999999999999999874

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=87.73  E-value=0.54  Score=44.89  Aligned_cols=33  Identities=18%  Similarity=0.262  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      ..|.|||+|..|.++|..|+..|. +|.++|.+.
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            579999999999999999999998 999999986

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=87.68  E-value=0.94  Score=46.00  Aligned_cols=37  Identities=30%  Similarity=0.573  Sum_probs=34.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      ++||||||||++||++|..|+++|++|+|+|+++..+
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~   43 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPR   43 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCC
Confidence            5899999999999999999999999999999998543

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=87.60  E-value=0.39  Score=49.35  Aligned_cols=35  Identities=20%  Similarity=0.289  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       187 k~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~  221 (542)
T 1w4x_A          187 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF  221 (542)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcc
Confidence            46999999999999999999999999999987643

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=87.55  E-value=0.38  Score=45.94  Aligned_cols=37  Identities=16%  Similarity=0.123  Sum_probs=32.9

Q ss_pred             CCCcccEEEECC-ChhHHHHHHHhhhCCC-------eEEEEecCC
Q 036458            1 MDEDYDVIVLGT-GLKECILSGVLSVDGL-------KVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGa-Gl~Gl~aA~~La~~G~-------~VlvlE~n~   37 (445)
                      |.....|+|+|| |..|..++..|.+.|+       +|.++|++.
T Consensus         1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~   45 (327)
T 1y7t_A            1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ   45 (327)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence            676678999997 9999999999999996       899999864

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=87.50  E-value=0.56  Score=41.44  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=29.5

Q ss_pred             cEEEECC-ChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGT-GLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|+|.|+ |..|..++..|.++|++|.++.|+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            3899997 9999999999999999999999874

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=87.34  E-value=0.55  Score=41.52  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=29.9

Q ss_pred             cEEEEC-CChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLG-TGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|+|.| +|..|..++..|.++|++|+.+.|+.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKV   34 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSG
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            489999 89999999999999999999999985

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=87.32  E-value=0.56  Score=43.19  Aligned_cols=32  Identities=28%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .++|||+|-.|...|..|.+.|.+|++++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999999874

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=87.32  E-value=0.42  Score=45.01  Aligned_cols=32  Identities=9%  Similarity=-0.009  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      +|.|||+|..|.++|..|+..|+  +|.++|.+.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            58999999999999999999998  999999875

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=87.28  E-value=0.4  Score=46.95  Aligned_cols=40  Identities=23%  Similarity=0.313  Sum_probs=35.4

Q ss_pred             cccEEEECC-ChhHHHHHHHhhhCCC---eEEEEecCC-CCCCcc
Q 036458            4 DYDVIVLGT-GLKECILSGVLSVDGL---KVLHMDRNA-YYGGES   43 (445)
Q Consensus         4 ~~DViIIGa-Gl~Gl~aA~~La~~G~---~VlvlE~n~-~~GG~~   43 (445)
                      .-.|+|||+ |..|+.|+..+..-|.   +|+++|.+. .-||..
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~~  258 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGPF  258 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSCC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCch
Confidence            357999999 9999999999999997   999999987 567763

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=87.14  E-value=1.4  Score=44.79  Aligned_cols=37  Identities=19%  Similarity=0.343  Sum_probs=34.2

Q ss_pred             CcccEEEECCChhHHHHHHHhhh------------CCCeEEEEecCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSV------------DGLKVLHMDRNAYY   39 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~------------~G~~VlvlE~n~~~   39 (445)
                      ..+||||||||++|+++|..|++            .|.+|+|+|+++.+
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~   54 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVA   54 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCC
Confidence            46899999999999999999999            99999999998653

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=87.09  E-value=0.38  Score=44.89  Aligned_cols=32  Identities=13%  Similarity=0.124  Sum_probs=29.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|..|...|..|++.|++|++++ +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            369999999999999999999999999998 54

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=87.08  E-value=0.66  Score=43.22  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=30.7

Q ss_pred             cEEEECC-ChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            6 DVIVLGT-GLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         6 DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      .|+|.|| |.-|..++..|.++|++|+++-|++..
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~   36 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP   36 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            4899997 999999999999999999999887644

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=87.02  E-value=0.63  Score=43.79  Aligned_cols=33  Identities=24%  Similarity=0.274  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|-.|..+|..|...|.+|++++++.
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            469999999999999999999999999999874

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=86.99  E-value=0.56  Score=43.94  Aligned_cols=35  Identities=20%  Similarity=0.269  Sum_probs=31.8

Q ss_pred             cccEEEECC-ChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            4 DYDVIVLGT-GLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ...|+|.|+ |.-|..++..|.++|++|+++.|+..
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            357999998 99999999999999999999998765

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=86.91  E-value=0.6  Score=43.66  Aligned_cols=38  Identities=18%  Similarity=0.178  Sum_probs=32.3

Q ss_pred             CCCcccEEEECC-ChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            1 MDEDYDVIVLGT-GLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      |.+...|+|.|| |.-|..++..|.++|++|.++.|+..
T Consensus         1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~   39 (313)
T 1qyd_A            1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   39 (313)
T ss_dssp             -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCc
Confidence            654567999995 99999999999999999999999853

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=86.84  E-value=0.47  Score=52.75  Aligned_cols=33  Identities=27%  Similarity=0.290  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHhhhCCC-eEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~   38 (445)
                      +|+|||+|..|+-+|..|++.|. +|+++++.++
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~  367 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF  367 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecCh
Confidence            79999999999999999999995 9999999873

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=86.80  E-value=0.51  Score=44.14  Aligned_cols=32  Identities=16%  Similarity=0.324  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|+|+|+|-.|..+|..|++.| +|++.+|+.
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            46999999999999999999999 999998873

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=86.70  E-value=0.69  Score=42.51  Aligned_cols=32  Identities=22%  Similarity=0.293  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      .++|||+|-+|.+++..|.+.|. +|++++|+.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            79999999999999999999997 999999874

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=86.68  E-value=0.48  Score=45.33  Aligned_cols=33  Identities=15%  Similarity=0.090  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      ..|.|||+|..|..+|..|+..|.  +|.++|.+.
T Consensus        22 ~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           22 NKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            579999999999999999999997  999999864

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=86.62  E-value=1.2  Score=46.87  Aligned_cols=41  Identities=20%  Similarity=0.210  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      .++||||||+|++||+||+.|+++|.+|+||||+...||.+
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~s   44 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS   44 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred             ccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            46899999999999999999999999999999998776554

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=86.56  E-value=0.52  Score=44.59  Aligned_cols=34  Identities=18%  Similarity=0.282  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC--eEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~~   38 (445)
                      ..|.|||+|..|...|..|+.+|.  .|.++|.+..
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            579999999999999999999999  9999999873

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=86.44  E-value=0.71  Score=43.29  Aligned_cols=33  Identities=27%  Similarity=0.251  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||+|-.|..+|..|...|.+|++++++.
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999874

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=86.38  E-value=0.6  Score=44.38  Aligned_cols=33  Identities=24%  Similarity=0.419  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      ..|.|||+|..|.++|..|+..|.  +|.++|.+.
T Consensus         7 ~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            579999999999999999998885  899999874

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=86.33  E-value=1  Score=47.11  Aligned_cols=41  Identities=17%  Similarity=0.190  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      .++||||||+|++||+||..|+++|.+|+|+||....||.+
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s   57 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHT   57 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            46899999999999999999999999999999998776654

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=86.23  E-value=0.61  Score=48.07  Aligned_cols=34  Identities=18%  Similarity=0.360  Sum_probs=32.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      -.++|||.|--|..+|..|.+.|++|+++|+++.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~  382 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQES  382 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChH
Confidence            4699999999999999999999999999999975

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=86.22  E-value=1.3  Score=41.18  Aligned_cols=57  Identities=11%  Similarity=-0.018  Sum_probs=43.2

Q ss_pred             cchHHHHHHHHHHH-cCcEEEeCCcceeEEEcCCCcEEEEEe----------CC-----eEEEcCEEEECCCCC
Q 036458          231 LGELPQAFARLSAV-YGGTYMLNKPECKVEFDGDGKVIGVTS----------EG-----ETAKCKKVVCDPSYL  288 (445)
Q Consensus       231 ~~~L~q~l~r~~~~-~Gg~i~l~~~V~~I~~~~~g~~~~v~~----------~g-----~~~~ad~VI~~~~~~  288 (445)
                      ..++.+.+.+.+.. .|.+++++++|++|..+ ++++.+|..          +|     .++.||.||.+.+..
T Consensus       118 ~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~-~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~  190 (284)
T 1rp0_A          118 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHD  190 (284)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSS
T ss_pred             HHHHHHHHHHHHHhcCCCEEEcCcEEEEEEec-CCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCc
Confidence            35677777776655 69999999999999884 666767653          22     679999999987754

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=86.11  E-value=0.56  Score=44.62  Aligned_cols=32  Identities=19%  Similarity=0.345  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      .|.|||+|..|.++|..|++.|.  +|.++|.+.
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            58999999999999999999997  999999986

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=86.01  E-value=0.64  Score=46.69  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ...|+|||+|-.|...|..|.++|.+|+|++.+.
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            3569999999999999999999999999999853

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=85.97  E-value=0.55  Score=43.78  Aligned_cols=33  Identities=15%  Similarity=0.083  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      ..++|||+|-+|.++|..|++.|. +|+++.|+.
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            469999999999999999999998 999998875

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=85.83  E-value=0.58  Score=43.59  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhC--CCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~   37 (445)
                      ..|.|||+|.-|...|..|+++  |++|+++|++.
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            4699999999999999999988  68999999874

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=85.73  E-value=0.66  Score=43.78  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=30.4

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|-+||-|.-|...|..|.++|++|++++++.
T Consensus         5 kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~   36 (300)
T 3obb_A            5 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   36 (300)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEeeehHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            59999999999999999999999999999875

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=85.47  E-value=1.3  Score=41.89  Aligned_cols=55  Identities=13%  Similarity=0.099  Sum_probs=42.6

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSY  287 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~  287 (445)
                      .++.+.+.+.++..|.+++++++|++|..+ ++.+.+|.+++.++.+|+||.+.+.
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~v~~~~g~~~~d~vV~AtG~  130 (357)
T 4a9w_A           76 AEVLAYLAQYEQKYALPVLRPIRVQRVSHF-GERLRVVARDGRQWLARAVISATGT  130 (357)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSCCEEEEEEE-TTEEEEEETTSCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEC-CCcEEEEEeCCCEEEeCEEEECCCC
Confidence            466677777778889999999999999884 5544436665458999999998764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=85.35  E-value=0.69  Score=44.00  Aligned_cols=34  Identities=15%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      ..+|+|||+|-.|.++|..|+..|.  .|.++|.+.
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999985  899999873

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=85.24  E-value=1.5  Score=45.55  Aligned_cols=39  Identities=21%  Similarity=0.207  Sum_probs=36.0

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      +++||||||||++||++|+.|+++|++|+|+|+++.+++
T Consensus        22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~   60 (591)
T 3i3l_A           22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRY   60 (591)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCC
Confidence            469999999999999999999999999999999976654

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=85.22  E-value=0.64  Score=47.18  Aligned_cols=33  Identities=18%  Similarity=0.243  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHH-HHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECI-LSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~-aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|.|||-|-+|++ +|..|.+.|++|++.|.+.
T Consensus        23 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~   56 (494)
T 4hv4_A           23 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP   56 (494)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC
Confidence            57999999999997 7999999999999999874

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=85.20  E-value=1.4  Score=44.91  Aligned_cols=59  Identities=10%  Similarity=0.017  Sum_probs=45.0

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCC---cEEEEEeCC---eEEEcCEEEECCCCCC
Q 036458          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDG---KVIGVTSEG---ETAKCKKVVCDPSYLP  289 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g---~~~~v~~~g---~~~~ad~VI~~~~~~p  289 (445)
                      -..+-+.|.+.++..|++++++++|++|..++++   .+.....++   .+++||.||.+.+...
T Consensus       119 ~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          119 QDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence            3467788888888889999999999999985432   344333444   7899999999887664

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=85.11  E-value=1.9  Score=45.06  Aligned_cols=39  Identities=26%  Similarity=0.304  Sum_probs=35.3

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC-CCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA-YYGG   41 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~-~~GG   41 (445)
                      .+|||||||||++||.||..|++.|.+|+++|++. .+|+
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~   65 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQ   65 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCC
Confidence            46999999999999999999999999999999984 5553

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=84.97  E-value=0.77  Score=46.24  Aligned_cols=33  Identities=18%  Similarity=0.153  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|+|+|+|-.|..+|..|+..|.+|++.|+++
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            469999999999999999999999999999874

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=84.92  E-value=0.45  Score=45.55  Aligned_cols=33  Identities=9%  Similarity=0.002  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      -.++|+|.|-.|...|..|.+.|+ |+++|+++.
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~  148 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENV  148 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGG
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChh
Confidence            369999999999999999999999 999999863

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=84.90  E-value=0.84  Score=43.75  Aligned_cols=34  Identities=12%  Similarity=0.115  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|.|||.|..|...|..|+..|++|++++++..
T Consensus       151 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          151 KTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            3599999999999999999999999999998764

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=85.13  E-value=0.18  Score=44.70  Aligned_cols=34  Identities=26%  Similarity=0.136  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..+.|||+|--|...|..|+++|++|++++++..
T Consensus        20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   53 (201)
T 2yjz_A           20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ   53 (201)
Confidence            4689999999999999999999999999998754

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=84.82  E-value=0.58  Score=47.58  Aligned_cols=37  Identities=14%  Similarity=0.150  Sum_probs=31.7

Q ss_pred             cEEEECCChhHHHHHHHhhhC--------------CCeEEEEecCCCCCCc
Q 036458            6 DVIVLGTGLKECILSGVLSVD--------------GLKVLHMDRNAYYGGE   42 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~--------------G~~VlvlE~n~~~GG~   42 (445)
                      .++|||+|.+|+-+|..|+..              ..+|+++|+.+++-..
T Consensus       219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~  269 (502)
T 4g6h_A          219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNM  269 (502)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTT
T ss_pred             ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccC
Confidence            599999999999999998753              3689999999987654

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=84.80  E-value=0.74  Score=44.01  Aligned_cols=33  Identities=18%  Similarity=0.272  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      ..|.|||+|..|.++|..|+..|.  ++.++|.+.
T Consensus        10 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   44 (326)
T 3vku_A           10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            479999999999999999999998  899999863

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=84.79  E-value=0.96  Score=39.97  Aligned_cols=32  Identities=19%  Similarity=0.289  Sum_probs=29.0

Q ss_pred             cEEEEC-CChhHHHHHHHhh-hCCCeEEEEecCC
Q 036458            6 DVIVLG-TGLKECILSGVLS-VDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIG-aGl~Gl~aA~~La-~~G~~VlvlE~n~   37 (445)
                      .|+|.| +|-.|..+|..|+ +.|++|+++.|+.
T Consensus         7 ~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~   40 (221)
T 3r6d_A            7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQL   40 (221)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCc
Confidence            399999 5999999999999 8999999999874

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=84.74  E-value=0.72  Score=46.24  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhC--------------------C-CeEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVD--------------------G-LKVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~--------------------G-~~VlvlE~n~~~   39 (445)
                      -.|+|||+|..|+-+|..|++.                    | .+|+++++++..
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            4699999999999999999974                    6 599999988654

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=84.72  E-value=0.9  Score=43.48  Aligned_cols=33  Identities=15%  Similarity=0.183  Sum_probs=30.2

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCC--eEEEEecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGL--KVLHMDRN   36 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n   36 (445)
                      ...|.|||+|..|.++|..|+..|.  .+.++|.+
T Consensus        19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           19 QNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            3579999999999999999999998  89999987

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=84.71  E-value=0.97  Score=42.93  Aligned_cols=32  Identities=16%  Similarity=0.311  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRN   36 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n   36 (445)
                      ..|+|+|+|=+|.++|..|++.|. +|+++.|+
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            469999999999999999999997 89999887

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=84.70  E-value=0.84  Score=45.70  Aligned_cols=36  Identities=31%  Similarity=0.373  Sum_probs=31.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      |.. ..|+|+|+|-.|..+|..|++.|++|++.+++.
T Consensus         1 M~~-k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~   36 (450)
T 1ff9_A            1 MAT-KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   36 (450)
T ss_dssp             -CC-CEEEEECCSTTHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHhCcCEEEEEECCH
Confidence            543 469999999999999999999999999999863

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=84.62  E-value=0.84  Score=43.36  Aligned_cols=32  Identities=28%  Similarity=0.175  Sum_probs=29.9

Q ss_pred             cEEEECC-ChhHHHHHHHhhhCC--CeEEEEecCC
Q 036458            6 DVIVLGT-GLKECILSGVLSVDG--LKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGa-Gl~Gl~aA~~La~~G--~~VlvlE~n~   37 (445)
                      +|+|||| |..|..+|..|+..|  ..|.++|.+.
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            5999998 999999999999999  7999999986

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=84.60  E-value=0.94  Score=42.06  Aligned_cols=33  Identities=18%  Similarity=0.138  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      ..++|+|+|-+|.++|..|++.|. +|+++.|+.
T Consensus       121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            469999999999999999999994 999998863

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=84.53  E-value=2.2  Score=43.13  Aligned_cols=57  Identities=7%  Similarity=-0.009  Sum_probs=43.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCe---EEEcCEEEECCCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGE---TAKCKKVVCDPSYLP  289 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~---~~~ad~VI~~~~~~p  289 (445)
                      ..+-+.|.+.++..|++++++++|++|..+ ++.+.....++.   +++||+||.+.+...
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A          107 STTESVLEEWALGRGAELLRGHTVRALTDE-GDHVVVEVEGPDGPRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCEEEEEEEC-SSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence            456777888888889999999999999885 444443334443   799999999877653

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=84.34  E-value=1  Score=41.99  Aligned_cols=33  Identities=12%  Similarity=0.087  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      ..++|+|+|-.|.++|..|++.|. +|+++.|+.
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            469999999999999999999995 999998874

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=84.31  E-value=1  Score=40.46  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=29.4

Q ss_pred             cEEEECC-ChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGT-GLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .|+|.|+ |--|..+|..|+++|++|++++|+..
T Consensus         3 ~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~   36 (255)
T 2dkn_A            3 VIAITGSASGIGAALKELLARAGHTVIGIDRGQA   36 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            3888887 89999999999999999999998753

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=84.26  E-value=0.96  Score=42.17  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=30.2

Q ss_pred             ccEEEEC-CChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLG-TGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..++|+| +|-.|..+|..|++.|.+|.+++|+.
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            4689999 99999999999999999999999874

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=84.22  E-value=0.88  Score=42.33  Aligned_cols=38  Identities=32%  Similarity=0.391  Sum_probs=31.4

Q ss_pred             CCCcccEEEECC-ChhHHHHHHHhhhCC-CeEEEEecCCC
Q 036458            1 MDEDYDVIVLGT-GLKECILSGVLSVDG-LKVLHMDRNAY   38 (445)
Q Consensus         1 m~~~~DViIIGa-Gl~Gl~aA~~La~~G-~~VlvlE~n~~   38 (445)
                      |.....|+|.|+ |..|..++..|.++| ++|..+.|+..
T Consensus         2 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~   41 (299)
T 2wm3_A            2 MVDKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPR   41 (299)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCC
Confidence            544456999998 999999999999999 99999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	445
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	1e-108
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	4e-20
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	2e-58
d1d5ta2	97	d.16.1.6 (A:292-388) Guanine nucleotide dissociati	7e-57
d2bcgg3	98	d.16.1.6 (G:302-399) Guanine nucleotide dissociati	2e-54
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	3e-46
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-07
d1vg0a2	113	d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Ra	6e-31
d2bcgg2	47	c.3.1.3 (G:400-446) Guanine nucleotide dissociatio	2e-17
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	0.001

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  326 bits (837), Expect = e-108
 Identities = 72/298 (24%), Positives = 131/298 (43%), Gaps = 21/298 (7%)

Query: 56  KGDDKPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKI 115
           K      + +   + +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G +
Sbjct: 207 KNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTV 266

Query: 116 YKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYG 175
            +VP +  +   S  + + EKR   KF  +  EYEE  P  +   +    T  E +    
Sbjct: 267 EQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEE-HPDEYRAYE--GTTFSEYLKTQK 323

Query: 176 LEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELP 235
           L  +   F+ H++A+    +      +   K  K + + L R+ G +P+++PLYG GELP
Sbjct: 324 LTPNLQYFVLHSIAMTSETTSCTVDGL---KATKKFLQCLGRY-GNTPFLFPLYGQGELP 379

Query: 236 QAFARLSAVYGGTYMLNKPECKVEFDGD-GKVIGV-TSEGETAKCKKVVCDPSYLPDKVQ 293
           Q F R+ AV+GG Y L      +  D +  K   V    G+    K  + + SYL +   
Sbjct: 380 QCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENT- 438

Query: 294 KVGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCC-SYAHNVAPNGQY 350
              +V+R  C  + P        S   +      G  +D  +    +    + PN  +
Sbjct: 439 -CSRVSR-DCYNDLP--------SNVYVCSGPDSGLGNDNAVKQAETLFQQICPNEDF 486

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 90.2 bits (223), Expect = 4e-20
 Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 5/235 (2%)

Query: 3   EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPP 62
            D+DVIV+GTGL E I++   S  G +VLH+D  +YYGG   S + + L    K   +  
Sbjct: 5   SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENN 64

Query: 63  ERLGSSKEYNVDM-IPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPAT 121
           + +  +  +   +   +  +      + + H +V  Y +        V   G + K  A+
Sbjct: 65  DVVTENSMWQEQILENEEAIPLSSKDKTIQHVEVFCYASQD--LHKDVEEAGALQKNHAS 122

Query: 122 DVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDDTI 181
              A  +      E          +     + P         + +     ++   + +  
Sbjct: 123 VTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCPGPESSPEVNDAEATGKKENS 182

Query: 182 DFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYP--LYGLGEL 234
           D          N   +++      K    Y++ +   +  +  +    LY  G L
Sbjct: 183 DAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLL 237

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  191 bits (486), Expect = 2e-58
 Identities = 163/296 (55%), Positives = 223/296 (75%), Gaps = 6/296 (2%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGD-- 58
           +D DYDVIVLGTG+ ECILSG+LSVDG KVLH+D+  +YGGE+ S+ L+QL+++FK +  
Sbjct: 2   IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 61

Query: 59  --DKPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIY 116
             ++   + G  +++NVD+IPKF+MANG L  ILIHTDVT+Y++FK V GS+V+ +GKIY
Sbjct: 62  SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 121

Query: 117 KVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGL 176
           KVPA ++EA+ SPLMG+FEKRR +KF  ++  Y+EDD  +H+GLDL+K T  E+  K+GL
Sbjct: 122 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 181

Query: 177 EDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQ 236
            + T +FIGHA+AL  ND YL++PA    +RI LY +S+AR+    PY+YP+YGLGELPQ
Sbjct: 182 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKS-PYLYPMYGLGELPQ 240

Query: 237 AFARLSAVYGGTYMLNKPECKVEFDGD-GKVIGVTSEGETAKCKKVVCDPSYLPDK 291
            FARLSA+YGGTYML+ P  +V +  D GK  GV ++  T K   V+ DP+Y P+K
Sbjct: 241 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEK 296

>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 97

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  180 bits (459), Expect = 7e-57
 Identities = 50/96 (52%), Positives = 70/96 (72%)

Query: 293 QKVGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIA 352
           +K G+V R ICI++HPI +TND++SCQ+I+PQ Q+ RKSD+Y+   SYAHNVA  G+YIA
Sbjct: 1   RKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIA 60

Query: 353 FVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRF 388
             ST  ET +PE E++P + LL P+D+ F    D +
Sbjct: 61  IASTTVETTDPEKEVEPALGLLEPIDQKFVAISDLY 96

>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 98

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  174 bits (442), Expect = 2e-54
 Identities = 49/97 (50%), Positives = 68/97 (70%), Gaps = 1/97 (1%)

Query: 293 QKVG-KVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYI 351
           +  G +V RAICI+NHP+P+T+++ S Q+I+PQ QLGRKSD+Y+   S AHNV   G Y+
Sbjct: 1   KSTGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYL 60

Query: 352 AFVSTEAETDNPEVELKPGIDLLGPVDEIFFDTYDRF 388
           A +ST  ETD P +EL+P   LLGP++E F    + F
Sbjct: 61  AIISTIIETDKPHIELEPAFKLLGPIEEKFMGIAELF 97

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  160 bits (405), Expect = 3e-46
 Identities = 181/293 (61%), Positives = 239/293 (81%), Gaps = 3/293 (1%)

Query: 1   MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLT-QLWKRFKGDD 59
           MDE+YDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+    +L+KRF+  +
Sbjct: 3   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62

Query: 60  KPPERLGSSKEYNVDMIPKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVP 119
            PPE +G  +++NVD+IPKF+MANG LV++L++T+VT+YL+FK V+GSFVY  GKIYKVP
Sbjct: 63  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122

Query: 120 ATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIISKYGLEDD 179
           +T+ EAL S LMG+FEKRR RKF ++V  ++E+DPK+ EG+D    + R++  K+ L  D
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182

Query: 180 TIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+  D YL++P ++ + RIKLY+ESLAR+ G SPY+YPLYGLGELPQ FA
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 241

Query: 240 RLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPDKV 292
           RLSA+YGGTYMLNKP   +  + +GKV+GV SEGE A+CK+++CDPSY+PD+V
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYVPDRV 293

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 389 VPTNNHEADHCFISTSYDATTHFESTVQDVLEMYTKITGKAVD 431
           VP ++      F S SYDATTHFE+T  D+ ++Y ++ G A D
Sbjct: 293 VPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFD 335

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  112 bits (283), Expect = 6e-31
 Identities = 12/96 (12%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 297 KVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVST 356
           +++RA+ I +  +  T+      ++    +      + +     +      G Y+  ++ 
Sbjct: 4   QISRAVLITDGSVLRTDADQQVSILTVPAEEPGSFAVRVIELCSSTMTCMKGTYLVHLTC 63

Query: 357 EAETDNPEVELKPGID-LLGPVDEIFFDTYDRFVPT 391
              +     +L+  +  L  P  EI  +      P 
Sbjct: 64  M-SSKTAREDLERVVQKLFTPYTEIEAENEQVEKPR 98

>d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.2 bits (180), Expect = 2e-17
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 390 PTNNHEADHCFISTSYDATTHFESTVQDVLEMYTKITGKAVDLS 433
           P  +   D+ ++S SYDA++HFES   DV ++Y ++TG  + L 
Sbjct: 1   PREDGSKDNIYLSRSYDASSHFESMTDDVKDIYFRVTGHPLVLK 44

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 1  MDEDYDVIVLGTGLKECILSGVLSVDGLKVL 31
          MD  YDV+++G+G   C  +  L   G KV 
Sbjct: 1  MDIKYDVVIVGSGPIGCTYARELVGAGYKVA 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	445
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	100.0
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	100.0
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	100.0
d1d5ta2	97	Guanine nucleotide dissociation inhibitor, GDI {Co	99.96
d2bcgg3	98	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.95
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.88
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.85
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.83
d1vg0a2	113	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	99.73
d2bcgg2	47	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.72
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.71
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.55
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.54
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.52
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.49
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.48
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.47
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.44
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.39
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.39
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.27
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.18
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.13
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.02
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.89
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.89
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.85
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.84
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.82
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.82
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.8
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.8
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.78
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.76
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.73
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.72
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.63
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.62
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.59
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.56
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.55
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.55
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.54
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.54
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.54
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.51
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.5
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.5
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.48
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.48
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.47
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.47
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.46
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.45
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.45
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.45
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.38
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.37
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.34
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.33
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.33
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.32
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.19
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.18
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.16
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.13
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.1
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.82
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.79
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.78
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.74
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.72
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.72
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.71
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.69
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.69
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.65
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.53
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.51
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.5
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.38
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.32
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.2
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.18
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.17
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.15
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.12
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.06
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	96.98
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.89
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.77
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.75
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.72
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.7
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.69
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.68
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.61
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.6
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.58
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.52
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.5
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.47
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.45
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.29
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.25
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.08
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.84
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.68
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.64
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.62
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.57
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.55
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.55
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.55
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.52
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.51
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.43
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.3
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.24
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.19
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.1
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.06
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.91
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.61
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.45
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.34
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	94.24
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	94.21
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	94.2
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	93.88
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.87
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	93.21
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.15
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.88
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.86
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.58
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	92.44
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	92.42
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	92.31
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	92.28
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	92.18
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	92.18
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	92.18
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.01
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	91.74
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	91.69
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	91.63
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	91.59
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.59
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	91.57
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	91.51
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	91.4
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	91.33
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.16
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	91.14
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	90.92
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	90.81
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.79
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	90.78
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	90.65
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	90.56
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	90.54
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	90.2
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	90.15
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	90.13
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	89.83
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	89.26
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	89.23
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	88.71
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	88.68
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.57
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	88.09
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	87.95
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	87.81
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	87.45
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	87.26
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	86.97
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	86.66
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	86.55
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	86.22
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	86.2
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	86.14
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	85.84
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	85.82
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	85.68
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	85.4
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	85.31
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	85.23
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	83.92
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	83.91
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	83.9
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	83.88
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	83.65
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	83.45
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	82.97
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	82.3
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	81.69
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	81.28
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	81.11
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	81.06
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	80.76
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	80.61
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	80.53
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	80.49

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.8e-63  Score=495.50  Aligned_cols=328  Identities=30%  Similarity=0.551  Sum_probs=282.8

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCC--------------------
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKP--------------------   61 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~--------------------   61 (445)
                      .++|||||+||||.++++|++|||.|++|||+|+|+||||.++||+++++.+|+......                    
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~~~~L~~w~~~~~~~~~~~~~~~~~~~~~~e~e~~   83 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEEA   83 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEEE
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccceeHHHHHHHHHhhhcccccccccccccccccccchh
Confidence            468999999999999999999999999999999999999999999999998887311000                    


Q ss_pred             --------------------------------------------------------------------------------
Q 036458           62 --------------------------------------------------------------------------------   61 (445)
Q Consensus        62 --------------------------------------------------------------------------------   61 (445)
                                                                                                      
T Consensus        84 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  163 (491)
T d1vg0a1          84 IPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCPG  163 (491)
T ss_dssp             EEBCSSCCCEEEEEEEECSCC-----------------------------------------------------------
T ss_pred             cccccccccccccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence                                                                                            


Q ss_pred             CC-------------------------------------------------ccCCCCCeEEecccceeecCchhHHHhhh
Q 036458           62 PE-------------------------------------------------RLGSSKEYNVDMIPKFMMANGGLVRILIH   92 (445)
Q Consensus        62 ~~-------------------------------------------------~~~~~~~~~iDlgp~~l~~~~~l~~~l~~   92 (445)
                      |+                                                 .++.+|+|+|||.|++++++|.++++|++
T Consensus       164 ~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~r~~niDL~Pk~l~a~g~lv~~Li~  243 (491)
T d1vg0a1         164 PESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIK  243 (491)
T ss_dssp             ---------------------------------------------CCCHHHHHHTGGGCCEESSCCCEESSSHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccchheecccHHHHHHHH
Confidence            00                                                 03457999999999999999999999999


Q ss_pred             ccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCccccccccCCCCCHHHHHH
Q 036458           93 TDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDLNKVTAREIIS  172 (445)
Q Consensus        93 ~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  172 (445)
                      +++.+|+||+.++++|+|.+|++++||+++.++|+++++++++||++|||+.++.++.+ +|..++.+  +..||.+|++
T Consensus       244 S~v~rYlEFk~v~~~~v~~~g~~~~VP~sr~eif~s~~l~l~eKR~lmkFl~~v~~~~~-~~~~~~~~--~~~~~~e~l~  320 (491)
T d1vg0a1         244 SNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEE-HPDEYRAY--EGTTFSEYLK  320 (491)
T ss_dssp             HTGGGGCCEEECCEEEEESSSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGG-CHHHHHTT--TTSBHHHHHT
T ss_pred             cChhhheeEEEeceEEEecCCeEEECCCCHHHHhcCCCCCHHHHHHHHHHHHHHhhccC-Cccccccc--cCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999864 56655543  5789999999


Q ss_pred             HcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHHHHHHHHHHcCcEEEeC
Q 036458          173 KYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLN  252 (445)
Q Consensus       173 ~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~  252 (445)
                      +++|++.+++++.|+++|+..+.+   ++.++++|+++|+.|+++| |++||+||+||+|||||+|||.+|++||+|+||
T Consensus       321 ~~~l~~~~~~~i~~aial~~~~~~---~~~~~l~ri~~yl~Slg~y-G~spflyp~YG~gEipQ~FcR~~AV~Gg~Y~L~  396 (491)
T d1vg0a1         321 TQKLTPNLQYFVLHSIAMTSETTS---CTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLR  396 (491)
T ss_dssp             TSSSCHHHHHHHHHHTTC--CCSC---BHHHHHHHHHHHHHHTTSS-SSSSEEEETTCTTHHHHHHHHHHHHTTCEEESS
T ss_pred             HcCCChHHHHHHHhheeccCCCCc---cHHHHHHHHHHHHHHHHhh-CCCCeEeecCCcchHHHHHHHHHHhcCcEEEcC
Confidence            999999999999999999876544   7889999999999999999 999999999999999999999999999999999


Q ss_pred             CcceeEEEc-CCCcEEEEE-eCCeEEEcCEEEECCCCCCccccccceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCC
Q 036458          253 KPECKVEFD-GDGKVIGVT-SEGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRK  330 (445)
Q Consensus       253 ~~V~~I~~~-~~g~~~~v~-~~g~~~~ad~VI~~~~~~p~~~~~~~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~  330 (445)
                      ++|++|..+ +++++.+|. .+|+++.|++||++|+|+|.+.  .+++.| +|+.++|        +.++|+|+.+.++.
T Consensus       397 ~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~~~--~~~v~r-~c~~~~~--------s~~~i~~~p~~~~~  465 (491)
T d1vg0a1         397 HSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENT--CSRVSR-DCYNDLP--------SNVYVCSGPDSGLG  465 (491)
T ss_dssp             CCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCTTT--TTTCCG-GGSSSCC--------TTEEEECCCCSSSS
T ss_pred             CccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCccc--cceeee-hhhcCCC--------ceEEEECCCCcCCc
Confidence            999999985 567888887 5789999999999999998754  345555 3444443        56778887777777


Q ss_pred             CCEEEEE-------ecCCccccCC
Q 036458          331 SDMYLFC-------CSYAHNVAPN  347 (445)
Q Consensus       331 ~~i~v~~-------~s~~~~~aP~  347 (445)
                      +++|+..       .+.+..+||+
T Consensus       466 ~d~~v~~a~~~~~~~~p~~~~cP~  489 (491)
T d1vg0a1         466 NDNAVKQAETLFQQICPNEDFCPA  489 (491)
T ss_dssp             SHHHHHHHHHHHHHHSTTCCSSCC
T ss_pred             cchhhhhHhhhhhhcCCCCCcCCC
Confidence            7777643       2566778885

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-43  Score=328.63  Aligned_cols=290  Identities=57%  Similarity=1.020  Sum_probs=248.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCC----CccCCCCCeEEecc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPP----ERLGSSKEYNVDMI   76 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~iDlg   76 (445)
                      |+++|||||||||++||+||++||++|++|+||||++++||+++|++.+++..++..+...+    ......++|++|++
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   81 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLI   81 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEeeccccccccCCCccccccccccccccccceeccC
Confidence            99999999999999999999999999999999999999999999999988777766543221    12345578999999


Q ss_pred             cceeecCchhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCccc
Q 036458           77 PKFMMANGGLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKS  156 (445)
Q Consensus        77 p~~l~~~~~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~  156 (445)
                      |+++..++.+.+.+...+..+++.|+.+++.+++.++...++|....+.+.....+..+++.+++|...+..+.......
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (297)
T d2bcgg1          82 PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLST  161 (297)
T ss_dssp             CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEETTEEEECCSSHHHHHHCTTSCHHHHHHHHHHHHHHHHCBTTBGGG
T ss_pred             cccccCCCcceeeeeeccccccccccccCcccccccCCccccccchhhhhhccccccccchhhhhhhhhhhhhhhccccc
Confidence            99999999999999899999999999999999999999999999988999888888889999999988887765433322


Q ss_pred             cccccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCCcchHHH
Q 036458          157 HEGLDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQ  236 (445)
Q Consensus       157 ~~~~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG~~~L~q  236 (445)
                      .....+...++.++++.+++++.+++++.+.+.+.....+...++...+.++..+..+...+ +..++.||+||+++|++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gG~~~l~~  240 (297)
T d2bcgg1         162 HQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ  240 (297)
T ss_dssp             STTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHH-SSCSEEEETTCTTHHHH
T ss_pred             hhhhcccchhhhhhhhhhccCHHHHHHHHHHHhhhccccccchhhhhhhhhhhhhhhccccc-ccCcceeccCcHHHHHH
Confidence            33334566889999999999999999887777766555555667888888888888888777 77889999999999999


Q ss_pred             HHHHHHHHcCcEEEeCCcceeEEEcC-CCcEEEEEeCCeEEEcCEEEECCCCCCcc
Q 036458          237 AFARLSAVYGGTYMLNKPECKVEFDG-DGKVIGVTSEGETAKCKKVVCDPSYLPDK  291 (445)
Q Consensus       237 ~l~r~~~~~Gg~i~l~~~V~~I~~~~-~g~~~~v~~~g~~~~ad~VI~~~~~~p~~  291 (445)
                      +|++.++.+|++|++|++|++|..++ ++++++|+++|++++||+||++|+|+|++
T Consensus       241 ~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~~s~~~~~  296 (297)
T d2bcgg1         241 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEK  296 (297)
T ss_dssp             HHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEECGGGCGGG
T ss_pred             HHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEChhhccCC
Confidence            99999999999999999999998743 56788888999999999999999999864

>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=3.9e-29  Score=188.06  Aligned_cols=96  Identities=52%  Similarity=0.918  Sum_probs=93.4

Q ss_pred             ccceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEEEecCCccccCCCcEEEEEEeeeCCCCcccccHhHHhh
Q 036458          294 KVGKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGIDL  373 (445)
Q Consensus       294 ~~~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~s~~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~~  373 (445)
                      +.+++.|+|||++||++++++..|+|+|+|++|++|+++||+++.|+.+++||+|+|++++||.+||++|++||+|++++
T Consensus         2 k~G~ViRaICIl~hPIpnt~~a~S~QIIiPq~Qv~Rk~DIYv~~~S~~h~V~~kg~yiaiVST~vET~nPe~El~pgl~l   81 (97)
T d1d5ta2           2 KAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALGL   81 (97)
T ss_dssp             EEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTTCSSCEEEEEEEGGGTSSCTTCEEEEEEEECCSSCHHHHTHHHHTT
T ss_pred             cccEEEEEEEEecCCcCCCCCCccEEEEeehHHhccCCCEEEEEeccccccCCCCeEEEEEEEEEecCCcHHHHHHHHHh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccceeeeeeccc
Q 036458          374 LGPVDEIFFDTYDRFV  389 (445)
Q Consensus       374 l~~~~~~~~~~~~~~~  389 (445)
                      ||||+++|+.++|+||
T Consensus        82 LgpI~e~F~~v~d~yE   97 (97)
T d1d5ta2          82 LEPIDQKFVAISDLYE   97 (97)
T ss_dssp             TCSCSEEEEEEEEEEE
T ss_pred             hccHHheeechhhccC
Confidence            9999999999999987

>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.3e-29  Score=187.27  Aligned_cols=96  Identities=51%  Similarity=0.913  Sum_probs=92.8

Q ss_pred             ccce-EEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEEEecCCccccCCCcEEEEEEeeeCCCCcccccHhHHh
Q 036458          294 KVGK-VARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGID  372 (445)
Q Consensus       294 ~~~~-~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~s~~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~  372 (445)
                      +.|+ +.|+|||++||++++++..|+|+|+|++|++|+++||+++.|+.+++||+|+|++++||.+||++|+.||+|+++
T Consensus         2 ~~GqkViRaICIl~hPipnt~~a~S~QIIiPq~Qv~Rk~DIYv~~~S~~h~V~~kg~yiAiVST~vET~nPe~El~pgl~   81 (98)
T d2bcgg3           2 STGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAIISTIIETDKPHIELEPAFK   81 (98)
T ss_dssp             EEEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTTCSSCEEEEEEEGGGTSSCTTCEEEEEEEECCSSCHHHHTHHHHG
T ss_pred             cccceEEEEEEEecCCcCCCCCCceEEEEEehHHhCCCcCEEEEEeccccccCCCCcEEEEEEEEeecCCcHHHHHHHHH
Confidence            4565 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCcccceeeeeeccc
Q 036458          373 LLGPVDEIFFDTYDRFV  389 (445)
Q Consensus       373 ~l~~~~~~~~~~~~~~~  389 (445)
                      +||||+++|+.++|+||
T Consensus        82 lLG~I~e~F~~v~d~yE   98 (98)
T d2bcgg3          82 LLGPIEEKFMGIAELFE   98 (98)
T ss_dssp             GGCSCSEEEEEEEEEEE
T ss_pred             hhccHHheEEcceeccC
Confidence            99999999999999997

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.2e-22  Score=191.83  Aligned_cols=251  Identities=18%  Similarity=0.241  Sum_probs=147.8

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC-c
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN-G   84 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~-~   84 (445)
                      ||||||||++||+||+.|+++|++|+||||++++||++.|.+..                   .++.+|+|++++... .
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~-------------------~g~~~d~G~~~~~~~~~   61 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQ-------------------KVKYVDLGGSYVGPTQN   61 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCT-------------------TTSCEESSCCEECTTCH
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECC-------------------CCcEEeCCceEeCCCCh
Confidence            89999999999999999999999999999999999999998753                   368899999999764 3


Q ss_pred             hhHHHhhhccccCceeeEEecceEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCc----ccc-cc
Q 036458           85 GLVRILIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDP----KSH-EG  159 (445)
Q Consensus        85 ~l~~~l~~~g~~~~l~~~~~~~~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~----~~~-~~  159 (445)
                      .+.+++.++|+..+ .+........+.+...........     .............+...+........    ... ..
T Consensus        62 ~~~~l~~~lgl~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (383)
T d2v5za1          62 RILRLAKELGLETY-KVNEVERLIHHVKGKSYPFRGPFP-----PVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLA  135 (383)
T ss_dssp             HHHHHHHHTTCCEE-ECCCSSEEEEEETTEEEEECSSSC-----CCCSHHHHHHHHHHHHHHHHHHTTSCTTCGGGSTTH
T ss_pred             HHHHHHHHcCCcce-eccCccceEEecCccccccccccc-----chhhhhhhhhHHHHHHHHHHhhhhcccccccchhhh
Confidence            56677777886421 111111122233333333222100     00111111122223322222211111    000 00


Q ss_pred             ccCCCCCHHHHHHHcCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHH---HhhhccCCCceEEeCCCcchHHH
Q 036458          160 LDLNKVTAREIISKYGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAE---SLARFQGGSPYIYPLYGLGELPQ  236 (445)
Q Consensus       160 ~~~~~~s~~~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~---s~~~~~g~s~~~~p~gG~~~L~q  236 (445)
                      ......++.+++.+....+....+................++...+..+.....   ..... .......+.+|++.+++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  214 (383)
T d2v5za1         136 EEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTT-NGGQERKFVGGSGQVSE  214 (383)
T ss_dssp             HHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCST-TSTTSEEETTCTHHHHH
T ss_pred             hhhhhhHHHHHHHHhccchHHHHHHHHhhhhhhccccchhhHHHHHHHHHhhcccccccccc-cCcceeeeccchhHHHH
Confidence            012347888888887777766654432221111111112233333332221111   11111 23334677899999988


Q ss_pred             HHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 036458          237 AFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPS  286 (445)
Q Consensus       237 ~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~  286 (445)
                      +++   +..|+++++|++|++|..+ ++++...+.+|++++||+||++.+
T Consensus       215 ~l~---~~~g~~i~~~~~v~~I~~~-~~~v~v~~~~g~~~~ad~vI~a~p  260 (383)
T d2v5za1         215 RIM---DLLGDRVKLERPVIYIDQT-RENVLVETLNHEMYEAKYVISAIP  260 (383)
T ss_dssp             HHH---HHHGGGEEESCCEEEEECS-SSSEEEEETTSCEEEESEEEECSC
T ss_pred             HHH---HHcCCeEEecCcceEEEec-CCeEEEEECCCCEEECCEEEECCC
Confidence            775   4578999999999999874 556654456899999999999864

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.85  E-value=4.4e-20  Score=174.25  Aligned_cols=245  Identities=15%  Similarity=0.128  Sum_probs=133.5

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecCc-
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMANG-   84 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~~-   84 (445)
                      ||+|||||++||+||++|+++|++|+||||++++||+++|++.                    .+|.+|.|++++.... 
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~--------------------~g~~~d~G~~~~~~~~~   61 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHAL--------------------AGYLVEQGPNSFLDREP   61 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEE--------------------TTEEEESSCCCEETTCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEee--------------------CCEEEecCceEEecCCH
Confidence            7999999999999999999999999999999999999999987                    4699999999998655 


Q ss_pred             hhHHHhhhccccCceeeEEecc--eEEEeCCeEEEccCChHHHhhccccCchhHHHHHHHHHHHHhhhccCccccccccC
Q 036458           85 GLVRILIHTDVTKYLNFKAVDG--SFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQEYEEDDPKSHEGLDL  162 (445)
Q Consensus        85 ~l~~~l~~~g~~~~l~~~~~~~--~~~~~~g~~~~vp~~~~~~~~~~l~~~~~k~~~~~f~~~~~~~~~~~~~~~~~~~~  162 (445)
                      .+.+++.+.++...+.+.....  .+.................+..........   .+   ..........     ...
T Consensus        62 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~-----~~~  130 (347)
T d2ivda1          62 ATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGAR---LR---VAGELFSRRA-----PEG  130 (347)
T ss_dssp             HHHHHHHHTTCGGGEECSCSSCCCEEEEETTEEEECCCSHHHHHTCSSSCHHHH---HH---HHGGGGCCCC-----CTT
T ss_pred             HHHHHHHHhcccccceeccccccceeeeccccccccccchhhhhhhhhccchhh---HH---HHhhhhhhhc-----ccc
Confidence            4455566677655443322221  122233344444444333333333222211   11   1111110000     011


Q ss_pred             CCCCHHHHHHHcCCChhHHHHHHHHh-hccccCCCCCCcHHHHHHHHHHHH-----------HH---h--------hhcc
Q 036458          163 NKVTAREIISKYGLEDDTIDFIGHAL-ALHINDSYLEEPAMDFVKRIKLYA-----------ES---L--------ARFQ  219 (445)
Q Consensus       163 ~~~s~~~~~~~~~l~~~~~~~i~~~~-~l~~~~~~~~~~~~~~l~~i~~~~-----------~s---~--------~~~~  219 (445)
                      ...++.++++................ ...... .........++.+....           ..   .        ....
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (347)
T d2ivda1         131 VDESLAAFGRRHLGHRATQVLLDAVQTGIYAGD-VEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPK  209 (347)
T ss_dssp             CCCBHHHHHHHHTCHHHHHHTHHHHHHHHHCCC-TTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSCC
T ss_pred             ccccHHHHHHhhhhcchhccccchhhhhhhccc-cchhhHHHHHHHHHHhhhhccchhhhhhhccchhcccccccccccc
Confidence            23455555543322111111110100 000000 00011111111111000           00   0        0000


Q ss_pred             CCCceEEeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCC--eEEEcCEEEECCC
Q 036458          220 GGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEG--ETAKCKKVVCDPS  286 (445)
Q Consensus       220 g~s~~~~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g--~~~~ad~VI~~~~  286 (445)
                      .......+.+|++.+.+++++   ..|++|++|++|++|..+ ++++..+. .+|  +++.||.||++.+
T Consensus       210 ~~~~~~~~~~g~~~~~~~l~~---~~g~~i~~~~~V~~I~~~-~~~~~v~~~~~~~~~~~~ad~VV~a~p  275 (347)
T d2ivda1         210 LSGALSTFDGGLQVLIDALAA---SLGDAAHVGARVEGLARE-DGGWRLIIEEHGRRAELSVAQVVLAAP  275 (347)
T ss_dssp             CCCCEEEETTCTHHHHHHHHH---HHGGGEESSEEEEEEECC---CCEEEEEETTEEEEEECSEEEECSC
T ss_pred             ccCcccccCCchHHHHHHHHH---HhhcccccCCEEEEEEEe-CCeEEEEEEcCCeEEEEECCEEEECCC
Confidence            122346788999999988765   458899999999999885 44444333 444  5789999999865

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.83  E-value=1.2e-19  Score=174.24  Aligned_cols=246  Identities=17%  Similarity=0.167  Sum_probs=140.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN   83 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~   83 (445)
                      ..+|+|||||++||+||++|+++|++|+|||+++++||++.|++...                  .++.+|.|++++...
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~------------------~g~~~d~G~~~~~~~   91 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEE------------------AGWYANLGPMRLPEK   91 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETT------------------TTEEEESSCCCEETT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecCC------------------CCceeccCceeecCc
Confidence            46899999999999999999999999999999999999999988643                  579999999998765


Q ss_pred             c-hhHHHhhhccccCceeeEE-ecceEEEeCCeEEEccCCh--HHHhhccccCchh----H----HHHHHHHHHHHhhhc
Q 036458           84 G-GLVRILIHTDVTKYLNFKA-VDGSFVYNKGKIYKVPATD--VEALKSPLMGLFE----K----RRARKFFIYVQEYEE  151 (445)
Q Consensus        84 ~-~l~~~l~~~g~~~~l~~~~-~~~~~~~~~g~~~~vp~~~--~~~~~~~l~~~~~----k----~~~~~f~~~~~~~~~  151 (445)
                      . .+.+++.+.++.. .++.. ....+++.++.......-.  .......+.....    .    ....++...+.....
T Consensus        92 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (370)
T d2iida1          92 HRIVREYIRKFDLRL-NEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNC  170 (370)
T ss_dssp             CHHHHHHHHHTTCCE-EEECSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCH
T ss_pred             cHHHHHHHHHhCCcc-ceeeccCCceEEecCCccccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence            4 4555666666532 12221 1233455555444332110  0001011100000    0    011111111111100


Q ss_pred             cCccccccccCCCCCHHHHHHH-cCCChhHHHHHHHHhhccccCCCCCCcHHHHHHHHHHHHHHhhhccCCCceEEeCCC
Q 036458          152 DDPKSHEGLDLNKVTAREIISK-YGLEDDTIDFIGHALALHINDSYLEEPAMDFVKRIKLYAESLARFQGGSPYIYPLYG  230 (445)
Q Consensus       152 ~~~~~~~~~~~~~~s~~~~~~~-~~l~~~~~~~i~~~~~l~~~~~~~~~~~~~~l~~i~~~~~s~~~~~g~s~~~~p~gG  230 (445)
                        .....  .....+..+++.. ..........+.........   ...........       ...+.....+.++.+|
T Consensus       171 --~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  236 (370)
T d2iida1         171 --SYILN--KYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSG---YYVSFIESLKH-------DDIFAYEKRFDEIVDG  236 (370)
T ss_dssp             --HHHHH--HHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCGGG---TTSBHHHHHHH-------HHHHTTCCCEEEETTC
T ss_pred             --hhhhh--hccchhHHHHHHHhccccHHHHHHhhccccccch---hhhHHHhhhhh-------hhhhccccccccchhh
Confidence              00001  1133556666644 34455555444332221111   01122211111       1111124456789999


Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEE-Ee---CCeEEEcCEEEECCC
Q 036458          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGV-TS---EGETAKCKKVVCDPS  286 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v-~~---~g~~~~ad~VI~~~~  286 (445)
                      +..|+++++   +..|+++++|++|++|..+ ++++... ..   ++++++||+||++.+
T Consensus       237 ~~~l~~~l~---~~~g~~i~~~~~V~~I~~~-~~~v~v~~~~~~~~~~~~~aD~VI~A~p  292 (370)
T d2iida1         237 MDKLPTAMY---RDIQDKVHFNAQVIKIQQN-DQKVTVVYETLSKETPSVTADYVIVCTT  292 (370)
T ss_dssp             TTHHHHHHH---HHTGGGEESSCEEEEEEEC-SSCEEEEEECSSSCCCEEEESEEEECSC
T ss_pred             HHHHHHHHH---HhcCCccccCceEEEEEEe-CCeEEEEEEecCCCeEEEEeeEEEecCC
Confidence            999999876   4578999999999999985 5554433 22   457899999999864

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=5.1e-18  Score=135.81  Aligned_cols=94  Identities=13%  Similarity=0.199  Sum_probs=77.9

Q ss_pred             ceEEEEEEeeccCCCCCCCCCceEEEeCCCcCCCCCCEEEEEecCCccccCCCcEEEEEEeeeCCCCcccccHhHHh-hc
Q 036458          296 GKVARAICIMNHPIPDTNDSHSCQVILPQKQLGRKSDMYLFCCSYAHNVAPNGQYIAFVSTEAETDNPEVELKPGID-LL  374 (445)
Q Consensus       296 ~~~~r~i~i~~~~i~~~~~~~~~~i~~p~~~~~~~~~i~v~~~s~~~~~aP~G~~~~~vst~~~~~~~~~~l~~~~~-~l  374 (445)
                      .+++|+|||+++|++++.+..++++++|+.+.+++++||++++|+++++||+|+|++|++|. ++++|+++|+++++ +|
T Consensus         3 ~~V~RaI~I~d~si~~~~~~~~v~ii~~p~~~~~~~~v~vl~~ss~~~vCP~G~yv~~~St~-~t~~~~~~L~~a~~~Ll   81 (113)
T d1vg0a2           3 RQISRAVLITDGSVLRTDADQQVSILTVPAEEPGSFAVRVIELCSSTMTCMKGTYLVHLTCM-SSKTAREDLERVVQKLF   81 (113)
T ss_dssp             EEEEEEEEEESSCSSCCSCCCCCEEEEECCSSTTSCCEEEEEECGGGTSSCTTCEEEEEEEE-CSSCHHHHHHHHHHHHC
T ss_pred             EEEEEEEEEECCCCCCCCCCccEEEeecCcccCCCCCEEEEEecCCcccCCCCCEEEEEEEc-CCCCHHHHHHHHHHHhh
Confidence            57999999999999877766788998888877889999999999999999999999999996 57899999999998 99


Q ss_pred             CCcccceeeeeecccc
Q 036458          375 GPVDEIFFDTYDRFVP  390 (445)
Q Consensus       375 ~~~~~~~~~~~~~~~~  390 (445)
                      +++.+.+....+.++|
T Consensus        82 ~~~~e~~~~~~~~~kP   97 (113)
T d1vg0a2          82 TPYTEIEAENEQVEKP   97 (113)
T ss_dssp             BSCSCCC-------CC
T ss_pred             CccccccccccccCCC
Confidence            9888777654444443

>d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2.6e-18  Score=110.00  Aligned_cols=46  Identities=37%  Similarity=0.700  Sum_probs=43.8

Q ss_pred             cCCCCCCCcEEEccCCCCCCccHhHHHHHHHHHHHhcCCCcccccC
Q 036458          390 PTNNHEADHCFISTSYDATTHFESTVQDVLEMYTKITGKAVDLSVD  435 (445)
Q Consensus       390 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (445)
                      |+++|..+|||||+|||+++|||+++++|++||+||+|+++||+++
T Consensus         1 P~~dG~~d~ifISkSYDAtsHFEtt~~Dv~diY~ritG~~ldl~k~   46 (47)
T d2bcgg2           1 PREDGSKDNIYLSRSYDASSHFESMTDDVKDIYFRVTGHPLVLKQR   46 (47)
T ss_dssp             ESSCSTTTSEEECCCCCSCSBSHHHHHHHHHHHHHHHSSCCCCCCC
T ss_pred             CCCcCccCCEEEecCcCccchhHHHHHHHHHHHHHhhCCccceecc
Confidence            6778889999999999999999999999999999999999999976

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.71  E-value=6.4e-17  Score=152.31  Aligned_cols=74  Identities=18%  Similarity=0.198  Sum_probs=63.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMANG   84 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~~   84 (445)
                      .+|+|||||++||+||++|+++|++|+|||+++++||+++|++.                    .+|.+|+|++++....
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~--------------------~g~~~d~G~~~~~~~~   61 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQ--------------------DGLIWDEGANTMTESE   61 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEE--------------------TTEEEESSCCCBCCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEecc--------------------CCEEEecCceEEeCCC
Confidence            36999999999999999999999999999999999999999987                    4699999999998654


Q ss_pred             -hhHHHhhhccccCc
Q 036458           85 -GLVRILIHTDVTKY   98 (445)
Q Consensus        85 -~l~~~l~~~g~~~~   98 (445)
                       .+.+++.+.++...
T Consensus        62 ~~~~~~~~~~~~~~~   76 (373)
T d1seza1          62 GDVTFLIDSLGLREK   76 (373)
T ss_dssp             HHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHhCCccc
Confidence             55566666666443

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.55  E-value=7.7e-15  Score=140.30  Aligned_cols=97  Identities=13%  Similarity=0.235  Sum_probs=75.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMAN   83 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~~   83 (445)
                      ..+|+|||||++||+||+.|+++|++|+|+||++++||++.|+...+                 ..++.+|.|||+++..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~-----------------~g~~~~~~Gphif~t~   64 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSE-----------------TNVMVHVYGPHIFHTD   64 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTT-----------------TCCEEETTSCCCEEES
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecC-----------------CCceEEecCceeecCc
Confidence            45799999999999999999999999999999999999999986422                 1568899999999876


Q ss_pred             chhH-HHhhhccccCceeeEEec-ceEEEeCCeEEEccCCh
Q 036458           84 GGLV-RILIHTDVTKYLNFKAVD-GSFVYNKGKIYKVPATD  122 (445)
Q Consensus        84 ~~l~-~~l~~~g~~~~l~~~~~~-~~~~~~~g~~~~vp~~~  122 (445)
                      .+.+ +.+.+.     .+|.... ....+.+|+.+++|.+.
T Consensus        65 ~~~v~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~P~~~  100 (314)
T d2bi7a1          65 NETVWNYVNKH-----AEMMPYVNRVKATVNGQVFSLPINL  100 (314)
T ss_dssp             CHHHHHHHHTT-----SCEEECCCCEEEEETTEEEEESCCH
T ss_pred             cHHHHHHHHHh-----hhhhhhccccceeecceeeccCccH
Confidence            5433 444322     2454432 33466789999999884

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.2e-15  Score=142.47  Aligned_cols=74  Identities=15%  Similarity=0.259  Sum_probs=65.1

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA   82 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~   82 (445)
                      ++.+|||||||++||+||+.|+++|++|+|||+++++||++.|++.                    .+|.+|+|++++..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~--------------------~g~~~d~G~~~i~~   63 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRK--------------------GNYVADLGAMVVTG   63 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEE--------------------TTEEEESSCCEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEe--------------------CCEEEECCCEEECC
Confidence            4578999999999999999999999999999999999999999987                    46999999999974


Q ss_pred             C--chhHHHhhhcccc
Q 036458           83 N--GGLVRILIHTDVT   96 (445)
Q Consensus        83 ~--~~l~~~l~~~g~~   96 (445)
                      .  ..+.+++.++|+.
T Consensus        64 ~~~~~~~~l~~~lgl~   79 (449)
T d2dw4a2          64 LGGNPMAVVSKQVNME   79 (449)
T ss_dssp             SBTCHHHHHHHHHTCC
T ss_pred             CCCcHHHHHHHHcCCc
Confidence            3  3566777778863

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.52  E-value=9.5e-16  Score=140.84  Aligned_cols=58  Identities=24%  Similarity=0.382  Sum_probs=53.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEEecccceeec
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNVDMIPKFMMA   82 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iDlgp~~l~~   82 (445)
                      .||+|||||++||+||+.|+++|+ +|+||||++++||+++|++.                    .+|.+|+|++++..
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~--------------------~g~~~d~G~~~~~~   59 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNF--------------------AGINVELGANWVEG   59 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEE--------------------TTEEEESSCCEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEecc--------------------CCEEEecCCeEEec
Confidence            489999999999999999999995 79999999999999999887                    46999999999864

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.8e-14  Score=136.68  Aligned_cols=94  Identities=18%  Similarity=0.320  Sum_probs=72.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccccchhhhhhhhcCCCCCCCccCCCCCeEE-ecccceeec
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSLNLTQLWKRFKGDDKPPERLGSSKEYNV-DMIPKFMMA   82 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i-Dlgp~~l~~   82 (445)
                      .|||||||||++||+||..|+++|++|+|+|+++++||++.|.+.                    .|+.+ |.|||+++.
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~--------------------~g~~~~~~G~h~f~t   60 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDC--------------------EGIQIHKYGAHIFHT   60 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEE--------------------TTEEEETTSCCCEEE
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCc--------------------CCEEEeecCcEEEEe
Confidence            389999999999999999999999999999999999999999876                    45776 789999987


Q ss_pred             CchhH-HHhhhccccCceeeEEe-cceEEEeCCeEEEccCCh
Q 036458           83 NGGLV-RILIHTDVTKYLNFKAV-DGSFVYNKGKIYKVPATD  122 (445)
Q Consensus        83 ~~~l~-~~l~~~g~~~~l~~~~~-~~~~~~~~g~~~~vp~~~  122 (445)
                      ..+-+ +.+.+..     +|... ...+.+.+|+..++|.+.
T Consensus        61 ~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~P~~~   97 (298)
T d1i8ta1          61 NDKYIWDYVNDLV-----EFNRFTNSPLAIYKDKLFNLPFNM   97 (298)
T ss_dssp             SCHHHHHHHHTTS-----CBCCCCCCCEEEETTEEEESSBSH
T ss_pred             cchHHHHHhhccc-----cceeeccccceeeeceeEEecccH
Confidence            65444 4443321     22222 223455689999999873

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.48  E-value=1e-13  Score=129.62  Aligned_cols=63  Identities=11%  Similarity=0.164  Sum_probs=50.7

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      +.|..|   ...+.+++.+.++..|++++++++|++|..+ ++++ .|.++..+++||.||.+++.+.
T Consensus       140 ~~~~~g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v-~V~t~~g~i~a~~VViAaG~~s  205 (281)
T d2gf3a1         140 FEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDIS-PDSV-KIETANGSYTADKLIVSMGAWN  205 (281)
T ss_dssp             EETTCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSCE-EEEETTEEEEEEEEEECCGGGH
T ss_pred             eccccccccccccccccccccccccccccCCcEEEEEEEE-CCEE-EEEECCcEEEcCEEEECCCCcc
Confidence            345555   3578889999999999999999999999984 6654 5777777899999999987663

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.47  E-value=1.2e-13  Score=128.75  Aligned_cols=64  Identities=14%  Similarity=0.132  Sum_probs=51.6

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 036458          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLPD  290 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p~  290 (445)
                      +.|..|   ...+.++|.+.+...|++|+.+++|++|..  +++.++|.++..++.||.||.+++.+..
T Consensus       141 ~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~V~t~~g~i~a~~vV~AaG~~s~  207 (276)
T d1ryia1         141 FIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVER--DGEALFIKTPSGDVWANHVVVASGVWSG  207 (276)
T ss_dssp             EETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEEC--SSSSEEEEETTEEEEEEEEEECCGGGTH
T ss_pred             EeccceeeecccchhHHHHHHHHcCCEEecceEEEeEEe--ecceEEEecCCeEEEcCEEEECCCccHH
Confidence            345555   446888899999999999999999999986  3455778887778999999999887743

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.44  E-value=1.3e-12  Score=123.61  Aligned_cols=64  Identities=20%  Similarity=0.218  Sum_probs=54.4

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 036458          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPSYLP  289 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~~~p  289 (445)
                      ++|..|   ...+.+++.+.++..|++++.+++|++|.. +++++++|.++..+++||+||.+++.+.
T Consensus       138 ~~~~~g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~-~~~~v~~V~T~~g~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         138 HVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADGVIPADIVVSCAGFWG  204 (305)
T ss_dssp             EETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTEEEECSEEEECCGGGH
T ss_pred             ecccccccchhhhhhhHHhhhhcccccccCCceEEEEEE-eCCEEEEEeccceeEECCEEEEecchhH
Confidence            345555   346888999999999999999999999998 4888999998888899999999988764

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.39  E-value=4.1e-12  Score=116.40  Aligned_cols=62  Identities=19%  Similarity=0.289  Sum_probs=50.8

Q ss_pred             EEeCCC-cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE-eCCeEEEcCEEEECCCC
Q 036458          225 IYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT-SEGETAKCKKVVCDPSY  287 (445)
Q Consensus       225 ~~p~gG-~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~-~~g~~~~ad~VI~~~~~  287 (445)
                      .+|... ..++.+.|.+.++..|++++++++|++|..+ ++++.+|. .+|++++||.||.+.+.
T Consensus       102 ~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~a~~vI~AtGg  165 (251)
T d2i0za1         102 MFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVIAVGG  165 (251)
T ss_dssp             EEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEECCCC
T ss_pred             eecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEE-CCEEEEEEeCCCCeEecCeEEEccCC
Confidence            355544 5678899999999999999999999999984 77777776 57889999999987654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.39  E-value=1.2e-12  Score=120.73  Aligned_cols=61  Identities=15%  Similarity=0.230  Sum_probs=49.0

Q ss_pred             EeCCCcchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCc-EE-EEEeCCeEEEcCEEEECCC
Q 036458          226 YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGK-VI-GVTSEGETAKCKKVVCDPS  286 (445)
Q Consensus       226 ~p~gG~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~-~~-~v~~~g~~~~ad~VI~~~~  286 (445)
                      +|.....++.+.|.+.++..|++++++++|++|...+++. +. .+.+++++++||+||.+.+
T Consensus       103 ~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtG  165 (253)
T d2gqfa1         103 FCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATG  165 (253)
T ss_dssp             EETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCC
T ss_pred             ccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCC
Confidence            5556677888999999999999999999999998854443 22 3457899999999999765

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.27  E-value=5.1e-11  Score=112.55  Aligned_cols=64  Identities=17%  Similarity=0.069  Sum_probs=49.6

Q ss_pred             EEeCCC---cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe---CC--eEEEcCEEEECCCCC
Q 036458          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS---EG--ETAKCKKVVCDPSYL  288 (445)
Q Consensus       225 ~~p~gG---~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~---~g--~~~~ad~VI~~~~~~  288 (445)
                      .+|.++   ...+.+.+.+.+...|++++++++|++++.+++|+++||..   ++  .+++|+.||.+.+-+
T Consensus       135 ~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~  206 (308)
T d1y0pa2         135 HRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGF  206 (308)
T ss_dssp             EESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred             cccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCcc
Confidence            345443   34577888888888999999999999999877789999873   23  368899999976644

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.18  E-value=1.2e-10  Score=110.87  Aligned_cols=58  Identities=22%  Similarity=0.164  Sum_probs=47.2

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe---CC--eEEEcCEEEECCCCC
Q 036458          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS---EG--ETAKCKKVVCDPSYL  288 (445)
Q Consensus       231 ~~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~---~g--~~~~ad~VI~~~~~~  288 (445)
                      ...+.+.+.+.+...|++++++++|++|..+++|+++||..   ++  .+++|+.||.+.+-+
T Consensus       151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~  213 (322)
T d1d4ca2         151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGF  213 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred             hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCCc
Confidence            34688889898889999999999999999877888888863   23  358999999987644

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.13  E-value=5.1e-10  Score=106.19  Aligned_cols=56  Identities=20%  Similarity=0.188  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe---CCe--EEEcCEEEECCCCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS---EGE--TAKCKKVVCDPSYL  288 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~---~g~--~~~ad~VI~~~~~~  288 (445)
                      +|.++|.+.++..|++++++++|+++..++++++.||..   +++  ++.|+.||.+.+-+
T Consensus       149 ~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~  209 (317)
T d1qo8a2         149 EIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGY  209 (317)
T ss_dssp             HHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCC
T ss_pred             hhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEecccc
Confidence            688999999999999999999999998877889998863   443  57899999987654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=3.9e-11  Score=108.35  Aligned_cols=45  Identities=16%  Similarity=0.342  Sum_probs=42.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      |+++|||+|||+|++||+||.+|++.|++|+++|+++.+||.+..
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~   46 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN   46 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEE
Confidence            889999999999999999999999999999999999999998754

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.89  E-value=6.5e-09  Score=100.29  Aligned_cols=34  Identities=15%  Similarity=0.308  Sum_probs=32.4

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      ++|||||||+|.+|+++|.+|+++|++|+|||+.
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4799999999999999999999999999999984

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.89  E-value=4.6e-10  Score=100.33  Aligned_cols=43  Identities=19%  Similarity=0.375  Sum_probs=40.7

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s   45 (445)
                      ++|||||||+|.+||+||.++++.|++|+++|+++.+||.+..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~   44 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLN   44 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeec
Confidence            6799999999999999999999999999999999999998753

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.85  E-value=4.6e-10  Score=101.26  Aligned_cols=43  Identities=35%  Similarity=0.490  Sum_probs=40.2

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +.+|||||||+|++||+||.+|++.|++|+++|+++.+||.+.
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~   46 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            3579999999999999999999999999999999999999764

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.84  E-value=2.1e-08  Score=96.39  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      .||||||+|.+|+++|.+|+++|++|+|||+-
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            59999999999999999999999999999994

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.82  E-value=1.1e-09  Score=105.46  Aligned_cols=43  Identities=33%  Similarity=0.501  Sum_probs=39.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      ||.+|||||||+|.+|+++|.+||++|++|+|||+....++..
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~   43 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   43 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCCCcc
Confidence            9999999999999999999999999999999999976655443

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=1.5e-09  Score=93.80  Aligned_cols=42  Identities=19%  Similarity=0.289  Sum_probs=39.6

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +..+|+|||||++||+||..|+++|++|+++|+++.+||...
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~   83 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN   83 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEE
Confidence            457899999999999999999999999999999999999765

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.80  E-value=1.2e-09  Score=106.32  Aligned_cols=42  Identities=24%  Similarity=0.381  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHhhh------CCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSV------DGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~------~G~~VlvlE~n~~~GG~~~   44 (445)
                      .+|||||||||++||+||+.|||      +|++|+||||+.++|....
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~   78 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTL   78 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCcc
Confidence            46999999999999999999998      8999999999999987653

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.80  E-value=1.4e-09  Score=101.05  Aligned_cols=43  Identities=21%  Similarity=0.275  Sum_probs=39.5

Q ss_pred             CcccEEEECCChhHHHHHHHhhh-CCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSV-DGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~-~G~~VlvlE~n~~~GG~~~s   45 (445)
                      .++||+|||||++||+||..|++ .|++|+++|+++.+||.+.+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~   75 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL   75 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceee
Confidence            36899999999999999999987 59999999999999998764

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.78  E-value=1.9e-09  Score=96.36  Aligned_cols=42  Identities=24%  Similarity=0.356  Sum_probs=38.8

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      +++|||||||||++||+||.+|+|.|++|+++|+...+||..
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~   42 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccc
Confidence            468999999999999999999999999999999998877754

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.76  E-value=3.2e-09  Score=96.55  Aligned_cols=42  Identities=24%  Similarity=0.274  Sum_probs=38.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      |.++.+|||||||++||++|+.|+++|++|+|+||+...+|.
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~   44 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS   44 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTT
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence            778889999999999999999999999999999998755543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.73  E-value=2.7e-09  Score=100.25  Aligned_cols=43  Identities=26%  Similarity=0.261  Sum_probs=40.5

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      .+++||||||||++||++|..|.++|.+|+||||++.+||.|+
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~   47 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY   47 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccc
Confidence            4678999999999999999999999999999999999999764

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=2.6e-09  Score=95.18  Aligned_cols=41  Identities=22%  Similarity=0.329  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      ++|||||||+|.+|++||..|++.|++|+++|++ .+||.|.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~   41 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV   41 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEe
Confidence            4799999999999999999999999999999995 6899763

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.63  E-value=4.6e-09  Score=94.60  Aligned_cols=41  Identities=15%  Similarity=0.158  Sum_probs=38.1

Q ss_pred             cccEEEECCChhHHHHHHHhhhCC-------CeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDG-------LKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G-------~~VlvlE~n~~~GG~~~   44 (445)
                      .++|+|||+|++||+||++|+++|       ++|+|+||++++||.++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~   49 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   49 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeee
Confidence            478999999999999999999998       58999999999999774

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.62  E-value=8.6e-09  Score=97.95  Aligned_cols=56  Identities=18%  Similarity=0.130  Sum_probs=44.8

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe----CCe--EEEcCEEEECCCCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS----EGE--TAKCKKVVCDPSYL  288 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~----~g~--~~~ad~VI~~~~~~  288 (445)
                      ..+..++.+.+...|.+++.+++|.++..+ +++++++..    +|+  ++.|+.||.+.+-+
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~-~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~  219 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY  219 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccc-cccccceeEEeccCCcEEEEecCeEEEecccc
Confidence            468888999999999999999999999984 777776642    564  57899999876544

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=1.4e-08  Score=91.32  Aligned_cols=38  Identities=21%  Similarity=0.175  Sum_probs=35.5

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      +|||||||+|.+|++||.+++|.|++|+++|+++..|.
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~   40 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPL   40 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            69999999999999999999999999999999877554

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=1.9e-08  Score=86.91  Aligned_cols=39  Identities=23%  Similarity=0.461  Sum_probs=36.0

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      .|||||||||.+|+.||.+++|.|.+|+++|++  +||.+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~   39 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQIL   39 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCccc
Confidence            389999999999999999999999999999975  788775

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.55  E-value=2.7e-08  Score=94.64  Aligned_cols=45  Identities=16%  Similarity=0.217  Sum_probs=41.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCC--CeEEEEecCCCCCCcccc
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~~GG~~~s   45 (445)
                      |+....|+|||||++||+||..|+++|  ++|+|+||++.+||.|..
T Consensus         1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~   47 (335)
T d2gv8a1           1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   47 (335)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccc
Confidence            777788999999999999999998877  599999999999998864

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.8e-08  Score=89.69  Aligned_cols=39  Identities=21%  Similarity=0.310  Sum_probs=35.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      .|||||||+|.+|++||.++++.|++|+++|+ +.+||.|
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c   41 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTC   41 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCcc
Confidence            59999999999999999999999999999998 4667755

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=1.9e-08  Score=94.50  Aligned_cols=41  Identities=20%  Similarity=0.377  Sum_probs=35.7

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      +++|||||||+|++||+||..+++.| +|+||||++..||.+
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s   45 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGST   45 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC---
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCch
Confidence            45799999999999999999999988 999999999988864

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.54  E-value=1.5e-08  Score=96.55  Aligned_cols=39  Identities=28%  Similarity=0.370  Sum_probs=34.9

Q ss_pred             CCcccEEEECCChhHHHHHHHhh-----hCCCeEEEEecCCCCC
Q 036458            2 DEDYDVIVLGTGLKECILSGVLS-----VDGLKVLHMDRNAYYG   40 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La-----~~G~~VlvlE~n~~~G   40 (445)
                      +..|||+|||||++||++|..|+     ++|++|+||||++.+.
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            45699999999999999999996     6899999999987653

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.54  E-value=2e-08  Score=89.37  Aligned_cols=40  Identities=20%  Similarity=0.308  Sum_probs=36.3

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +|||||||+|.+||+||.+++|.|++|+++|+.. +||.+.
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~-~GG~~~   42 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCL   42 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC-CCccee
Confidence            6999999999999999999999999999999965 677653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.51  E-value=2.9e-08  Score=86.39  Aligned_cols=43  Identities=26%  Similarity=0.390  Sum_probs=38.9

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCCCCCccccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAYYGGESTSL   46 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~~GG~~~s~   46 (445)
                      ...|+|||||++||.||..|+++|+ +|+|+||+++.||.++..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~   47 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE   47 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhh
Confidence            4579999999999999999999998 599999999999977543

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.50  E-value=4.1e-08  Score=88.45  Aligned_cols=44  Identities=23%  Similarity=0.327  Sum_probs=40.8

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSL   46 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~   46 (445)
                      ...+|+|||||++||+||..|++.|++|+++|+++.+||.+...
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~   91 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQV   91 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHH
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccc
Confidence            45799999999999999999999999999999999999987643

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.50  E-value=3.9e-08  Score=90.21  Aligned_cols=41  Identities=32%  Similarity=0.494  Sum_probs=39.6

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      .+||+||||+|.+|+.+|..|++.|.+|+++|+++.+||.|
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c   81 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSC   81 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccc
Confidence            47999999999999999999999999999999999999987

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=3.4e-08  Score=92.99  Aligned_cols=43  Identities=28%  Similarity=0.292  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHhhh--CCCeEEEEecCCCCCCcccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSV--DGLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~--~G~~VlvlE~n~~~GG~~~s   45 (445)
                      .++||+|||+|++||+||..|++  .|++|+++|+++++||.+..
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            36899999999999999999996  49999999999999998753

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.48  E-value=5.8e-08  Score=88.39  Aligned_cols=39  Identities=15%  Similarity=0.120  Sum_probs=35.5

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      +..+|+|||||++||++|..|+++|++|+||||++.++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~   41 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLS   41 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            456899999999999999999999999999999987653

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.47  E-value=3.7e-08  Score=90.23  Aligned_cols=39  Identities=26%  Similarity=0.412  Sum_probs=36.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      ||+||||+|.+|+.||..+++.|++|+++|++ .+||.|-
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~   40 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCV   40 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEE
Confidence            89999999999999999999999999999985 5899773

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.47  E-value=2.9e-08  Score=88.44  Aligned_cols=40  Identities=13%  Similarity=0.248  Sum_probs=37.1

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      +||+||||+|.+|+.||..+++.|++|+++|++ .+||.|.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~   44 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCL   44 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCccc
Confidence            699999999999999999999999999999986 5798764

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.46  E-value=5.6e-08  Score=86.74  Aligned_cols=39  Identities=18%  Similarity=0.265  Sum_probs=34.8

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecC-CCCCCc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN-AYYGGE   42 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n-~~~GG~   42 (445)
                      .|||||||||.+||.||.++||.|.+|++++++ +.+|+.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~   41 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMP   41 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhccc
Confidence            599999999999999999999999999999998 444443

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.45  E-value=4.1e-08  Score=88.03  Aligned_cols=41  Identities=15%  Similarity=0.025  Sum_probs=37.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCCcccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGGESTS   45 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG~~~s   45 (445)
                      .+|+|||||++||+||..|+++  |++|+|+|+++++||.++.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~   44 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   44 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence            4799999999999999999876  7899999999999997653

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.45  E-value=6.4e-08  Score=88.70  Aligned_cols=40  Identities=18%  Similarity=0.270  Sum_probs=35.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCCCCCccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAYYGGEST   44 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~~GG~~~   44 (445)
                      .||+|||||++||++|..|+++|. +|+|+||++.++...+
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~   42 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGV   42 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCce
Confidence            699999999999999999999995 9999999988764433

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=3.1e-08  Score=94.11  Aligned_cols=41  Identities=15%  Similarity=0.205  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      .+|||||||+|++||.||..++++|++|+++||.+..||.+
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s   46 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcH
Confidence            47999999999999999999999999999999999988764

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.38  E-value=1.1e-07  Score=90.78  Aligned_cols=41  Identities=22%  Similarity=0.404  Sum_probs=36.6

Q ss_pred             cccEEEECCChhHHHHHHHhhh----CCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSV----DGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~----~G~~VlvlE~n~~~GG~~~   44 (445)
                      ++||||||+|++||+||..|++    +|.+|+|+||++..||.+.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~   65 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAV   65 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChhH
Confidence            5899999999999999999975    7999999999998877653

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.37  E-value=7.3e-08  Score=86.95  Aligned_cols=39  Identities=21%  Similarity=0.212  Sum_probs=34.8

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCCC
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYYG   40 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~G   40 (445)
                      +++|||||||+|.+|++||.++++.| ++|+|+|+....|
T Consensus         1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~   40 (240)
T d1feca1           1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHG   40 (240)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSB
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCC
Confidence            36899999999999999999999998 5799999988743

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.34  E-value=1.5e-07  Score=84.33  Aligned_cols=37  Identities=16%  Similarity=0.136  Sum_probs=32.2

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCC
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAY   38 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~   38 (445)
                      ++.|||||||+|++|++||.++++.|. +|+++|+...
T Consensus         1 ~~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           1 SKIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             CCSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            357999999999999999999999885 7889988643

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=1.1e-07  Score=82.72  Aligned_cols=44  Identities=14%  Similarity=0.148  Sum_probs=37.9

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccccc
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGESTSL   46 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~s~   46 (445)
                      +++||+|||+|.+||.||.+|+|.|.+|+++|+++.-|.+..+-
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~   47 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTT   47 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccc
Confidence            35799999999999999999999999999999987755555443

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.33  E-value=1.2e-07  Score=91.23  Aligned_cols=34  Identities=38%  Similarity=0.567  Sum_probs=32.6

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      +.||+||||+|.+|+++|.+||++|++|+|||+.
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            4799999999999999999999999999999996

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.32  E-value=1.4e-07  Score=87.29  Aligned_cols=35  Identities=20%  Similarity=0.409  Sum_probs=32.8

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ++||+|||||++||++|.+|+++|++|+|+||++.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            46899999999999999999999999999999873

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.19  E-value=4.5e-07  Score=78.84  Aligned_cols=37  Identities=14%  Similarity=0.091  Sum_probs=34.3

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      ++||+|||||.+||.||.+|+|.|.+|+++|+.....
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~   41 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAND   41 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTT
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccc
Confidence            5899999999999999999999999999999887653

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.18  E-value=2.9e-07  Score=88.02  Aligned_cols=38  Identities=32%  Similarity=0.625  Sum_probs=33.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      |+..||+||||+|.+|+++|.+||++ ++|+|||+.+..
T Consensus        23 ~~~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~~   60 (351)
T d1ju2a1          23 LEGSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSLP   60 (351)
T ss_dssp             SEEEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBCG
T ss_pred             ccCCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCCC
Confidence            34579999999999999999999987 999999998654

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.16  E-value=5.5e-07  Score=87.15  Aligned_cols=37  Identities=24%  Similarity=0.402  Sum_probs=33.1

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYY   39 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~   39 (445)
                      +.||+||||+|.+||++|.+|+++| ++|+|||+..+.
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~   53 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYE   53 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCC
Confidence            3599999999999999999999987 799999997543

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=6.1e-07  Score=84.21  Aligned_cols=40  Identities=10%  Similarity=0.076  Sum_probs=36.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhC--CCeEEEEecCCCCCCcc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVD--GLKVLHMDRNAYYGGES   43 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~n~~~GG~~   43 (445)
                      ++||+|||+|++||.||..++++  |.+|+++||....||.+
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s   46 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHT   46 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcH
Confidence            68999999999999999999987  67999999998888764

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.10  E-value=8.1e-07  Score=86.15  Aligned_cols=37  Identities=30%  Similarity=0.543  Sum_probs=33.8

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYY   39 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~   39 (445)
                      +.||+||||+|.+||++|.+||++| ++|+|||+..+.
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            3599999999999999999999999 699999998653

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.82  E-value=9.8e-06  Score=64.19  Aligned_cols=38  Identities=18%  Similarity=0.156  Sum_probs=35.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      -+++|||||..|+-+|..|++.|.+|+++|+.+++...
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~   60 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG   60 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceeccc
Confidence            47999999999999999999999999999999998643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.79  E-value=1.5e-05  Score=63.52  Aligned_cols=40  Identities=13%  Similarity=0.243  Sum_probs=36.5

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      ...++|||+|+.|+-+|..|++.|++|+++|+++++-++.
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~   69 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA   69 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccccccc
Confidence            4579999999999999999999999999999999986544

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.78  E-value=9.5e-07  Score=78.90  Aligned_cols=35  Identities=20%  Similarity=0.176  Sum_probs=31.4

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      .|+|||||+.||++|+.|+++|++|+++|+...++
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~   36 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYA   36 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecc
Confidence            49999999999999999999999999988866554

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.74  E-value=5.8e-06  Score=73.86  Aligned_cols=39  Identities=21%  Similarity=0.250  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCC---CeEEEEecCCCCCCccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDG---LKVLHMDRNAYYGGEST   44 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G---~~VlvlE~n~~~GG~~~   44 (445)
                      .+|||||+|++|++||.++++.|   ++|+++|+ +.+||.|.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cl   43 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAV   43 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceee
Confidence            37999999999999999887665   68999998 56888654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.72  E-value=1.9e-05  Score=63.97  Aligned_cols=40  Identities=18%  Similarity=0.187  Sum_probs=36.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      ..+++|||||+.|+-+|..|++.|++|+++|+++++..+.
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~   74 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV   74 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccc
Confidence            4579999999999999999999999999999999986654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.72  E-value=1.8e-05  Score=63.32  Aligned_cols=39  Identities=23%  Similarity=0.212  Sum_probs=35.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      -+|+|||+|+.|+-+|..|++.|++|+++|+++++-++.
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~   69 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY   69 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccc
Confidence            479999999999999999999999999999999875544

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.71  E-value=1.9e-05  Score=62.53  Aligned_cols=37  Identities=16%  Similarity=0.192  Sum_probs=34.5

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      .-.|+|||||..|+-+|..|++.|.+|+++|+.+++.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il   58 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL   58 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcccc
Confidence            3479999999999999999999999999999999884

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=1.9e-05  Score=62.36  Aligned_cols=38  Identities=24%  Similarity=0.149  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      -.++|||+|+.|+-+|..|++.|.+|+++|+.+++...
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~   59 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS   59 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh
Confidence            36999999999999999999999999999999998643

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.69  E-value=1.6e-05  Score=63.45  Aligned_cols=37  Identities=30%  Similarity=0.471  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      .+++|||||+.|+-+|..|++.|++|+++|+++++.+
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~   69 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG   69 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC
Confidence            4699999999999999999999999999999998854

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.65  E-value=1.9e-05  Score=62.21  Aligned_cols=37  Identities=16%  Similarity=0.089  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -+++|||+|+.|+-+|..|++.|++|+++|+.+++.-
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~   58 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP   58 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccc
Confidence            4699999999999999999999999999999999853

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.53  E-value=4.2e-05  Score=60.60  Aligned_cols=38  Identities=18%  Similarity=0.153  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      -+++|||+|..||-.|..|++.|++|+++|+++++--.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~   60 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA   60 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc
Confidence            46999999999999999999999999999999997543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.51  E-value=4.3e-05  Score=60.85  Aligned_cols=38  Identities=21%  Similarity=0.269  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      -.++|||||..||-+|..|++.|.+|+++|+++++-..
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~   61 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS   61 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh
Confidence            46999999999999999999999999999999998643

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=4.4e-05  Score=61.04  Aligned_cols=37  Identities=24%  Similarity=0.261  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -+++|||+|..||-+|..|++.|.+|+++|+++++-.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~   59 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR   59 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccccc
Confidence            4799999999999999999999999999999998743

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.38  E-value=4.7e-05  Score=64.07  Aligned_cols=41  Identities=20%  Similarity=0.206  Sum_probs=35.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC--eEEEEecCCCCCCcccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNAYYGGESTS   45 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~~~GG~~~s   45 (445)
                      ..|||||+|.+|+.+|..|.+.|.  +|+++|+++++.+....
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~   45 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLS   45 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTH
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcccccccc
Confidence            479999999999999999999985  89999999987666544

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.32  E-value=5.9e-05  Score=60.10  Aligned_cols=38  Identities=16%  Similarity=0.146  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      -.++|||+|+.||-+|..|++.|.+|+++|+++++-..
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~   63 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT   63 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch
Confidence            36999999999999999999999999999999998543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.20  E-value=0.00019  Score=56.91  Aligned_cols=35  Identities=26%  Similarity=0.267  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      -.++|||||..|+-+|..|++.|.+|++++++...
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l   55 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL   55 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEechhh
Confidence            36999999999999999999999999999987544

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.18  E-value=0.00016  Score=57.65  Aligned_cols=39  Identities=13%  Similarity=0.117  Sum_probs=35.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      -.++|||+|..||-+|..|++.|.+|+++|+.+++....
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~   65 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGA   65 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccc
Confidence            469999999999999999999999999999999886543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00019  Score=53.96  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=32.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      ..|+|+|.|.+|+++|.+|++.|.+|++.|.+...
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            46999999999999999999999999999997654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.15  E-value=0.00024  Score=55.97  Aligned_cols=36  Identities=14%  Similarity=0.196  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      -.|+|||+|+.|+-.|..|++.|.+|+++|+++++.
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            479999999999999999999999999999999875

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.12  E-value=0.00017  Score=60.68  Aligned_cols=35  Identities=29%  Similarity=0.303  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      ..|+|||+|..|..+|..|+++|++|+|+||+..-
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~   37 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLES   37 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHH
Confidence            46999999999999999999999999999999663

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.06  E-value=0.00022  Score=60.20  Aligned_cols=41  Identities=17%  Similarity=0.049  Sum_probs=35.8

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCccc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGEST   44 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~~   44 (445)
                      .-+|+|||+|.+|+-+|..|++.|++|++++..+.......
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~   43 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH   43 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchh
Confidence            45899999999999999999999999999998887655443

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.98  E-value=0.00029  Score=58.58  Aligned_cols=34  Identities=24%  Similarity=0.278  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYG   40 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~G   40 (445)
                      .|+|||+|.+|+-+|..|++ +.+|+++|+++++.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~   35 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPY   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccc
Confidence            58999999999999999976 78999999988764

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.89  E-value=0.0003  Score=59.50  Aligned_cols=33  Identities=30%  Similarity=0.363  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..+.|||+|-.|+.+|..|+++|++|.++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            368999999999999999999999999999975

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.77  E-value=0.0006  Score=53.42  Aligned_cols=36  Identities=17%  Similarity=0.217  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHhh---hCCCeEEEEecCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLS---VDGLKVLHMDRNAYYG   40 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La---~~G~~VlvlE~n~~~G   40 (445)
                      ..++|||+|+.|+-+|..|+   ++|.+|+++|+.+++-
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            47999999999999997665   4567899999998873

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00046  Score=60.18  Aligned_cols=38  Identities=11%  Similarity=0.201  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChhHHHHHHHhhhCCC--eEEEEecCCCC
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNAYY   39 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~~~   39 (445)
                      .+++++||||+|++|+.+|..|.+.|+  +|+++++.+++
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            367899999999999999999998886  69999988765

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.72  E-value=0.0024  Score=49.75  Aligned_cols=53  Identities=17%  Similarity=0.222  Sum_probs=44.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEEC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCD  284 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~  284 (445)
                      .++.+.+.+.++..|.++++|+.|++|..+++++......+|+++.||.||++
T Consensus        64 ~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          64 HTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEEC
T ss_pred             hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEe
Confidence            46888888899999999999999999987556665433468899999999986

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.70  E-value=0.0026  Score=49.47  Aligned_cols=55  Identities=20%  Similarity=0.159  Sum_probs=45.3

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPS  286 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~  286 (445)
                      .++.+.+.+.++..|.++++++.|++|..++++....+..+|+++.||.||.+.+
T Consensus        62 ~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          62 SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             chhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            4678888888999999999999999998755665444457899999999998754

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00069  Score=56.13  Aligned_cols=33  Identities=24%  Similarity=0.217  Sum_probs=31.3

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      +|+|||+|--|+..|..|+++|++|++++|++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            589999999999999999999999999999875

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.68  E-value=0.00061  Score=58.39  Aligned_cols=34  Identities=18%  Similarity=0.165  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCC--CeEEEEecCCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAYY   39 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~~   39 (445)
                      +|+|||||.+|+.+|..|++.+  .+|+++|+++++
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            5999999999999999999874  589999999876

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00089  Score=53.95  Aligned_cols=39  Identities=18%  Similarity=0.223  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHhhh----CCCeEEEEecCCCCCCcc
Q 036458            5 YDVIVLGTGLKECILSGVLSV----DGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~----~G~~VlvlE~n~~~GG~~   43 (445)
                      ..++|||+|+.|+-+|..|++    .|.+|+++|+++++.++.
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~   80 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI   80 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCccc
Confidence            469999999999999999964    599999999999987544

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.60  E-value=0.0005  Score=58.12  Aligned_cols=37  Identities=24%  Similarity=0.208  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      -.|+|||+|.+|+-+|..|++.|.+|.+++..+....
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~   40 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER   40 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEeccccc
Confidence            4599999999999999999999999988887766543

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.58  E-value=0.00092  Score=52.21  Aligned_cols=37  Identities=16%  Similarity=0.186  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHhh---hCCCeEEEEecCCCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLS---VDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La---~~G~~VlvlE~n~~~GG   41 (445)
                      ..++|||+|+.|+-+|..|+   +.|.+|+++|+.+++..
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~   58 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR   58 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecccccccc
Confidence            47999999999999997655   45999999999988753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0038  Score=48.47  Aligned_cols=54  Identities=11%  Similarity=0.100  Sum_probs=44.3

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDP  285 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~  285 (445)
                      .++.+.+.+.++..|.++++++.|++|..++++.+.....+|+++.+|.||++.
T Consensus        62 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~  115 (116)
T d1gesa2          62 PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAI  115 (116)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEec
Confidence            467888888899999999999999999885555554334688999999999875

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.50  E-value=0.0013  Score=54.02  Aligned_cols=38  Identities=18%  Similarity=0.098  Sum_probs=33.4

Q ss_pred             cEEEE--CCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            6 DVIVL--GTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         6 DViII--GaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      .|+|+  |+|..|+.+|..|++.|++|+++|+.++++-..
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~   80 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMH   80 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHH
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccccc
Confidence            45665  999999999999999999999999999886544

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00089  Score=57.35  Aligned_cols=34  Identities=26%  Similarity=0.365  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      -.|.|||+|.-|...|..++++|++|+++|+++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            3699999999999999999999999999999864

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.45  E-value=0.00075  Score=57.51  Aligned_cols=33  Identities=24%  Similarity=0.259  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      -.|.|||+|..|...|..++++|++|+++|+++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999999999999985

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0044  Score=49.67  Aligned_cols=53  Identities=17%  Similarity=0.106  Sum_probs=43.1

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPS  286 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~  286 (445)
                      ++.+.+.+.++..|.++++|+.|++|..+ ++++.....+|+++.||.||++.+
T Consensus        84 ~~~~~~~~~l~~~GV~~~~~~~V~~i~~~-~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          84 YLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTEEEEEETTSCEEEESEEEECCC
T ss_pred             HHHHHHHHHHHhCCcEEEeCCEEEEEEec-CCEEEEEECCCCEEECCEEEEeec
Confidence            46677777889999999999999999874 555543446899999999999865

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.25  E-value=0.0015  Score=56.20  Aligned_cols=32  Identities=25%  Similarity=0.504  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|.|||.|.-||.+|..||++|++|+.+|.|.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            48999999999999999999999999999884

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.08  E-value=0.0023  Score=50.92  Aligned_cols=33  Identities=24%  Similarity=0.333  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .|+|+|+|--|..+|..|.++|++|+++|+++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            589999999999999999999999999999853

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.84  E-value=0.0035  Score=51.82  Aligned_cols=32  Identities=28%  Similarity=0.412  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|.|||+|.-|.+.|..|+++|++|+++|++.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            48999999999999999999999999999984

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.68  E-value=0.0089  Score=46.79  Aligned_cols=51  Identities=18%  Similarity=0.144  Sum_probs=42.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEEC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCD  284 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~  284 (445)
                      .++.+.+.+..+..|.++++++.|++|..  ++++..+.++|+++.||.||++
T Consensus        72 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~--~~~~~~v~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          72 KEFTDVLTEEMEANNITIATGETVERYEG--DGRVQKVVTDKNAYDADLVVVA  122 (123)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEEC--SSBCCEEEESSCEEECSEEEEC
T ss_pred             hhhHHHHHHHhhcCCeEEEeCceEEEEEc--CCCEEEEEeCCCEEECCEEEEE
Confidence            45777777888899999999999999975  4566667789999999999976

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.64  E-value=0.018  Score=44.51  Aligned_cols=53  Identities=8%  Similarity=-0.045  Sum_probs=42.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEE-cCEEEEC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAK-CKKVVCD  284 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~-ad~VI~~  284 (445)
                      .++.+.+.+.++..|.++++++.|++|...+++.+.....+|+++. +|.||++
T Consensus        63 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~A  116 (117)
T d1onfa2          63 ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYC  116 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEe
Confidence            4678888888899999999999999998765665544446888774 6999986

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.62  E-value=0.0044  Score=49.20  Aligned_cols=33  Identities=27%  Similarity=0.237  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .+||||.|-.|..+|..|.+.|++|+++|++..
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            589999999999999999999999999999853

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.57  E-value=0.0058  Score=50.44  Aligned_cols=34  Identities=24%  Similarity=0.225  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .-.|+|||+|.+|+.|+..+.+-|-+|+++|.+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            4579999999999999999999999999999873

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.55  E-value=0.0038  Score=53.06  Aligned_cols=33  Identities=27%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .+|.|||+|--|.+.|..|+++|++|+++.+++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            479999999999999999999999999998874

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.55  E-value=0.0057  Score=50.09  Aligned_cols=37  Identities=16%  Similarity=0.263  Sum_probs=33.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      |.++.+|.|||+|-.|.++|+.|+..|. ++.++|.+.
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            6678999999999999999999999986 899999876

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.55  E-value=0.016  Score=44.71  Aligned_cols=53  Identities=15%  Similarity=0.142  Sum_probs=40.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCC--eEEEcCEEEEC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEG--ETAKCKKVVCD  284 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g--~~~~ad~VI~~  284 (445)
                      .++.+.+.+..+..|.++++++.|++|..++++..+....+|  +++.||.||++
T Consensus        63 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          63 KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             chhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            368888888889999999999999999875444332233555  56899999874

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.52  E-value=0.0056  Score=49.79  Aligned_cols=33  Identities=18%  Similarity=0.400  Sum_probs=30.8

Q ss_pred             ccEEEEC-CChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLG-TGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      -.|.||| .|.-|...|..|+++|++|.++|++.
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            4799999 79999999999999999999999875

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.51  E-value=0.0053  Score=49.83  Aligned_cols=37  Identities=16%  Similarity=0.248  Sum_probs=34.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHhhhCC--CeEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECILSGVLSVDG--LKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~   37 (445)
                      |.++.+|.|||+|--|.++|+.|+..|  .++.++|.+.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            778889999999999999999999998  4899999875

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.43  E-value=0.028  Score=44.48  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=42.6

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCcceeEEEcC-CCcEEEEE-eCCeEEEcCEEEECC
Q 036458          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDG-DGKVIGVT-SEGETAKCKKVVCDP  285 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~-~g~~~~v~-~~g~~~~ad~VI~~~  285 (445)
                      ++.+.+.+..+..|.++++|+.|++|.... ++++..+. .+|+++.||.||.+.
T Consensus        78 ~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~  132 (133)
T d1q1ra2          78 PVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGI  132 (133)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECC
T ss_pred             hhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEee
Confidence            566667778899999999999999998743 45666666 578899999999875

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.30  E-value=0.022  Score=44.04  Aligned_cols=54  Identities=15%  Similarity=0.079  Sum_probs=43.2

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEE--e--CCeEEEcCEEEECC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVT--S--EGETAKCKKVVCDP  285 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~--~--~g~~~~ad~VI~~~  285 (445)
                      .++.+.+.+.++..|..+++++.|++|..++++++..+.  .  ++++++||.||++.
T Consensus        63 ~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~  120 (121)
T d1mo9a2          63 NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGL  120 (121)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECC
T ss_pred             cchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEE
Confidence            356777778888999999999999999987677765554  2  35679999999875

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.24  E-value=0.0083  Score=50.19  Aligned_cols=34  Identities=24%  Similarity=0.214  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      -.|+|||+|.+|+.||....+-|-.|+++|.+..
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            5799999999999999999999999999998853

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.19  E-value=0.0081  Score=49.06  Aligned_cols=34  Identities=26%  Similarity=0.261  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHhhhCC-CeEEEEecCCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAYY   39 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~~   39 (445)
                      +|+|||+|-+++=+|..|.|.| ++|+++.+.+..
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            6999999999999999999998 578899887653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.10  E-value=0.009  Score=49.18  Aligned_cols=31  Identities=16%  Similarity=0.169  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      .|.|||.|.-|...|..|+++|++|.++|++
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            4999999999999999999999999999987

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.06  E-value=0.025  Score=44.00  Aligned_cols=53  Identities=15%  Similarity=0.264  Sum_probs=41.8

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-C-----CeEEEcCEEEEC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-E-----GETAKCKKVVCD  284 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~-----g~~~~ad~VI~~  284 (445)
                      .++.+.+.+..+..|.++++|+.|++|..++++..+.++. +     +++++||.|+++
T Consensus        64 ~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          64 GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             hhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            4688888888999999999999999998865665555542 2     257899999875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.91  E-value=0.051  Score=41.89  Aligned_cols=53  Identities=11%  Similarity=0.119  Sum_probs=40.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe--C-CeEEEcCEEEECC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS--E-GETAKCKKVVCDP  285 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~--~-g~~~~ad~VI~~~  285 (445)
                      .++.+.+.+.++..|.++++++.|++|..+ ++.+.....  + ++++.||.||.+.
T Consensus        63 ~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~v~~~~~~~~~~~~~D~vlvAv  118 (119)
T d3lada2          63 EQVAKEAQKILTKQGLKILLGARVTGTEVK-NKQVTVKFVDAEGEKSQAFDKLIVAV  118 (119)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCEEEEEEEC-SSCEEEEEESSSEEEEEEESEEEECS
T ss_pred             chhHHHHHHHHHhcCceeecCcEEEEEEEe-CCEEEEEEEECCCCEEEECCEEEEee
Confidence            468888888899999999999999999985 444332222  2 2579999999875

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.61  E-value=0.014  Score=48.57  Aligned_cols=32  Identities=28%  Similarity=0.223  Sum_probs=29.5

Q ss_pred             cEEEE-CCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVL-GTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViII-GaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +|+|| |+|--|.+.|..|+++|++|++..|+.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48899 789999999999999999999999875

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.45  E-value=0.013  Score=49.09  Aligned_cols=30  Identities=30%  Similarity=0.232  Sum_probs=28.2

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEec
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDR   35 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~   35 (445)
                      +|.|||+|--|.+.|..|+++|++|++.-|
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            589999999999999999999999999854

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.34  E-value=0.041  Score=42.77  Aligned_cols=54  Identities=22%  Similarity=0.338  Sum_probs=41.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe--CC--eEEEcCEEEECC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS--EG--ETAKCKKVVCDP  285 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~--~g--~~~~ad~VI~~~  285 (445)
                      .++.+.+.+.++..|.++++|+.|++|..++++..+.+..  +|  ++++||.|+.++
T Consensus        66 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          66 AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            4688888899999999999999999998755554444443  33  468999998764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=94.24  E-value=0.022  Score=47.41  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      -+|-|||-|.-|...|..|.++|++|.++|++.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            479999999999999999999999999999875

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.21  E-value=0.017  Score=48.90  Aligned_cols=32  Identities=25%  Similarity=0.162  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      .|.|||.|.-||.+|..|| .|++|+.+|-|..
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            4899999999999999888 5999999999865

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.20  E-value=0.019  Score=47.00  Aligned_cols=32  Identities=28%  Similarity=0.329  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +|.|||.|.-|...|..|+++|++|.++|++.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            48999999999999999999999999999873

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.88  E-value=0.025  Score=47.00  Aligned_cols=32  Identities=31%  Similarity=0.395  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      +|-|||.|.-|...|..|.++|++|.++|++.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            58999999999999999999999999999863

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.87  E-value=0.024  Score=43.02  Aligned_cols=33  Identities=15%  Similarity=0.013  Sum_probs=29.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .+|+|||+|.+|+=.|..|++.+++|+++-+++
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            579999999999999999999999988776654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=93.21  E-value=0.089  Score=40.62  Aligned_cols=49  Identities=20%  Similarity=0.215  Sum_probs=39.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDP  285 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~  285 (445)
                      .++.+.+.+.++.+|.++++++.|+++.   ++.  .+..+|+++.||.||.+.
T Consensus        72 ~~~~~~~~~~l~~~GV~i~~~~~v~~~~---~~~--v~l~dg~~i~~D~vi~a~  120 (121)
T d1d7ya2          72 ATLADFVARYHAAQGVDLRFERSVTGSV---DGV--VLLDDGTRIAADMVVVGI  120 (121)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEE---TTE--EEETTSCEEECSEEEECS
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEe---CCE--EEECCCCEEECCEEEEee
Confidence            4677777788899999999999999874   332  234689999999999875

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.15  E-value=0.035  Score=44.81  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=30.9

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      ...+|.|||+|-.|.++|+.|+..|.  ++.++|.++
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            34689999999999999999999986  799999764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.88  E-value=0.067  Score=41.67  Aligned_cols=55  Identities=16%  Similarity=0.233  Sum_probs=41.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe-CC--eEEEcCEEEECCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS-EG--ETAKCKKVVCDPS  286 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~-~g--~~~~ad~VI~~~~  286 (445)
                      .++.+.+.+.++..|.++++++.|+++..++++..+.+.. +|  ++++||.|+.+.+
T Consensus        67 ~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          67 RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             hhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            4788888889999999999999999998754543333332 23  4799999998764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.86  E-value=0.051  Score=44.50  Aligned_cols=32  Identities=25%  Similarity=0.475  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      .+.|||.|+-|.+.|..|.++|+  +|..+|+|.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            49999999999999999999996  778889874

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.58  E-value=0.049  Score=44.62  Aligned_cols=32  Identities=22%  Similarity=0.235  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|+|+|+|..|+.++..+...|.+|+++|+++
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            58999999999999999999999999999875

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=92.44  E-value=0.073  Score=41.47  Aligned_cols=38  Identities=21%  Similarity=0.149  Sum_probs=34.2

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGG   41 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG   41 (445)
                      ..+|+|||+|-+.+-.|..|++-+.+|+++-|.+..-+
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~   64 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA   64 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccc
Confidence            45899999999999999999999999999998886643

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.42  E-value=0.054  Score=43.62  Aligned_cols=33  Identities=21%  Similarity=0.188  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      +|.|||.|..|...|..|+++|++|++.+++..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            489999999999999999999999999987654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.31  E-value=0.075  Score=40.43  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=30.6

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ...|+|||+|-.|..-|..|.+.|-+|+++....
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            4679999999999999999999999999997543

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=92.28  E-value=0.071  Score=43.48  Aligned_cols=33  Identities=15%  Similarity=0.143  Sum_probs=30.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCC--eEEEEecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGL--KVLHMDRN   36 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n   36 (445)
                      ..+|.|||+|--|.++|+.|+..|.  ++.++|.+
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            4689999999999999999999997  89999987

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.18  E-value=0.11  Score=40.07  Aligned_cols=49  Identities=18%  Similarity=0.256  Sum_probs=39.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTSEGETAKCKKVVCDPS  286 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~~g~~~~ad~VI~~~~  286 (445)
                      .++.+.+.+.++..|.++++|+.|+++..  +    ++.++++.+.||.||++.+
T Consensus        72 ~~~~~~~~~~l~~~GV~~~~~~~v~~~~~--~----~v~~~~~~i~~D~vi~a~G  120 (122)
T d1xhca2          72 EELSNMIKDMLEETGVKFFLNSELLEANE--E----GVLTNSGFIEGKVKICAIG  120 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEECS--S----EEEETTEEEECSCEEEECC
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEeC--C----EEEeCCCEEECCEEEEEEE
Confidence            35777777888899999999999998842  3    2567899999999998765

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=92.18  E-value=0.057  Score=43.10  Aligned_cols=32  Identities=16%  Similarity=0.331  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      +|.|||+|--|.++|+.|+..|. +++++|.+.
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            68999999999999999999885 899999765

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.18  E-value=0.048  Score=43.88  Aligned_cols=32  Identities=19%  Similarity=0.173  Sum_probs=29.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEec
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDR   35 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~   35 (445)
                      ...|+|||||-.|+.-|..|.++|-+|+|+..
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            45799999999999999999999999999943

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.063  Score=44.05  Aligned_cols=34  Identities=26%  Similarity=0.219  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~   38 (445)
                      -.|+|+|+|..|+.++..+...|. +|++.|+++.
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            359999999999999999999997 7999998853

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.74  E-value=0.051  Score=44.08  Aligned_cols=27  Identities=22%  Similarity=0.118  Sum_probs=24.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEE
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVL   31 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~Vl   31 (445)
                      .+|+|||+|..|+-+|..|++.|.++.
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~G~~~~   56 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQPGESTS   56 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred             CceEEEcCchhHHHHHHHHHHcCCccc
Confidence            479999999999999999999997543

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=91.69  E-value=0.09  Score=41.98  Aligned_cols=33  Identities=18%  Similarity=0.271  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      .+|.|||+|.-|.++|+.|+.+|.  ++.++|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            469999999999999999999986  899999774

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.63  E-value=0.094  Score=44.21  Aligned_cols=36  Identities=19%  Similarity=0.248  Sum_probs=31.2

Q ss_pred             CCCcccEEEEC-CChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            1 MDEDYDVIVLG-TGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      |.. ..|+|+| ||..|..++..|.++|++|+.+.|+.
T Consensus         1 m~~-kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           1 MAV-KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCC-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCC-CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            443 3599999 69999999999999999999998863

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=91.59  E-value=0.11  Score=40.33  Aligned_cols=40  Identities=15%  Similarity=-0.005  Sum_probs=35.2

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      ..+|+|||+|-+.+-.|..|++-..+|+++-|.+..-+.-
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~~   69 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQ   69 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCH
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccccc
Confidence            3589999999999999999999999999999888765443

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.59  E-value=0.12  Score=40.48  Aligned_cols=39  Identities=21%  Similarity=0.259  Sum_probs=35.9

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCc
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGE   42 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~   42 (445)
                      ..+|+|||+|-+.+-.|..|++--.+|+++-|.+.+.+.
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~   72 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRAS   72 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSC
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccc
Confidence            468999999999999999999999999999999988654

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=91.57  E-value=0.093  Score=41.82  Aligned_cols=32  Identities=13%  Similarity=0.245  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      +|.|||+|--|.++|+.|...|.  ++.++|.+.
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            69999999999999999999986  899999776

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=91.51  E-value=0.093  Score=43.06  Aligned_cols=34  Identities=15%  Similarity=0.083  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..+|+|+|+|=++-++++.|++.|.+|.++.|+.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            3579999999999999999999999999998763

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.40  E-value=0.097  Score=42.58  Aligned_cols=33  Identities=18%  Similarity=0.292  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      .+|.|||+|--|.++|+.|...|.  ++.++|.+.
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            579999999999999999999986  799999874

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.33  E-value=0.12  Score=39.33  Aligned_cols=51  Identities=16%  Similarity=0.129  Sum_probs=38.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcEEEEEe--CCeEEEcCEEEECC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKVIGVTS--EGETAKCKKVVCDP  285 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~~~v~~--~g~~~~ad~VI~~~  285 (445)
                      .++.+.+.+..+..|.+++++++|+++.   ++.......  +++++.||.||.+.
T Consensus        62 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~---~~~~~~~~~~~~~~~i~~D~vi~A~  114 (115)
T d1lvla2          62 SELTAPVAESLKKLGIALHLGHSVEGYE---NGCLLANDGKGGQLRLEADRVLVAV  114 (115)
T ss_dssp             HHHHHHHHHHHHHHTCEEETTCEEEEEE---TTEEEEECSSSCCCEECCSCEEECC
T ss_pred             chhHHHHHHHHHhhcceEEcCcEEEEEc---CCeEEEEEcCCCeEEEEcCEEEEec
Confidence            4577788888899999999999999984   333332332  33579999999875

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.16  E-value=0.11  Score=41.78  Aligned_cols=32  Identities=19%  Similarity=0.112  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .+||+|.|-.|..++..|.+.|++|+++|.++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            49999999999999999999999999999875

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=91.14  E-value=0.082  Score=42.37  Aligned_cols=33  Identities=18%  Similarity=0.311  Sum_probs=29.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      .+|.|||+|--|.++|+.|+..|.  ++.++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            368999999999999999998884  899999874

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.92  E-value=0.12  Score=42.05  Aligned_cols=33  Identities=21%  Similarity=0.149  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      -.|+|+|+|..|+.++..+...|.+|..+|+++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            369999999999999999999999999998874

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.81  E-value=0.12  Score=47.44  Aligned_cols=37  Identities=19%  Similarity=0.301  Sum_probs=33.3

Q ss_pred             CCCcccEEEEC-CChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            1 MDEDYDVIVLG-TGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      |.+...|+|.| +|.-|..++..|.++|++|+++|+..
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            66778899998 89999999999999999999998653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.79  E-value=0.11  Score=42.49  Aligned_cols=34  Identities=15%  Similarity=0.128  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      -.|+|+|+|..|+.++..+...|.+|.++++++.
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            3589999999999999888888999999999864

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=90.78  E-value=0.12  Score=41.07  Aligned_cols=33  Identities=15%  Similarity=0.130  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHhhhCC--CeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG--LKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~~   38 (445)
                      +|.|||+|--|.++|+.|+..|  .++.++|.++.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            5899999999999999999998  48999998873

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.65  E-value=0.12  Score=41.18  Aligned_cols=32  Identities=31%  Similarity=0.238  Sum_probs=28.3

Q ss_pred             cEEEECC-ChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            6 DVIVLGT-GLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         6 DViIIGa-Gl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      +|.|||| |.-|.++|+.|+..|.  .+.++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            5899995 9999999999999996  688889874

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.56  E-value=0.12  Score=41.64  Aligned_cols=32  Identities=9%  Similarity=0.122  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ++.|||+|.-|.+.|..|.++|++|++.+++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            48999999999999999999999999999874

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.54  E-value=0.12  Score=41.28  Aligned_cols=32  Identities=16%  Similarity=0.281  Sum_probs=28.7

Q ss_pred             cEEEECC-ChhHHHHHHHhhhCC--CeEEEEecCC
Q 036458            6 DVIVLGT-GLKECILSGVLSVDG--LKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGa-Gl~Gl~aA~~La~~G--~~VlvlE~n~   37 (445)
                      +|.|||+ |-.|.++|+.|+..|  .++.++|.+.
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            5999995 999999999999999  4999999874

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=90.20  E-value=0.15  Score=41.63  Aligned_cols=35  Identities=26%  Similarity=0.336  Sum_probs=30.9

Q ss_pred             CcccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            3 EDYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         3 ~~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      ...+|+|+|+|=++-++++.|.+.|. ++.|+.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            34679999999999999999999995 899998864

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.15  E-value=0.34  Score=37.28  Aligned_cols=54  Identities=11%  Similarity=-0.061  Sum_probs=39.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCCcE-EEEE-eCC------eEEEcCEEEECC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDGKV-IGVT-SEG------ETAKCKKVVCDP  285 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g~~-~~v~-~~g------~~~~ad~VI~~~  285 (445)
                      .++.+.+.+..+..|.++++|+.|++|..+++|.. ..+. ..|      ....||.||++.
T Consensus        63 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~  124 (125)
T d3grsa2          63 SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAI  124 (125)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECS
T ss_pred             hHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEe
Confidence            46888888888999999999999999987545432 2222 233      256799999875

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=90.13  E-value=0.13  Score=45.33  Aligned_cols=36  Identities=11%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             CcccEEEECC-ChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            3 EDYDVIVLGT-GLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         3 ~~~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ++..|+|+|| |..|..++.+|.++|++|..+.|+..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            4578999996 99999999999999999999998754

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.83  E-value=0.18  Score=40.42  Aligned_cols=34  Identities=15%  Similarity=0.386  Sum_probs=29.7

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      ..+|.|||+|--|.++|+.|.+.+. ++.++|.+.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            3579999999999999999998884 888999865

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=89.26  E-value=0.14  Score=42.24  Aligned_cols=33  Identities=15%  Similarity=0.159  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHhhhCCC-eEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~   38 (445)
                      .|+|+|+|..|+.++..+...|. +|.+.|+++.
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             EEEEECCCccchhheecccccccccccccccccc
Confidence            58999999999999999999996 8999998764

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.23  E-value=0.15  Score=40.58  Aligned_cols=32  Identities=9%  Similarity=-0.009  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      +|.|||+|-.|.++|+.|+.+|.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            58999999999999999998885  799999764

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=88.71  E-value=0.3  Score=37.37  Aligned_cols=35  Identities=26%  Similarity=0.289  Sum_probs=30.8

Q ss_pred             cccEEEECCC-----------hhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            4 DYDVIVLGTG-----------LKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaG-----------l~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ...|+|||+|           .++..|+.+|.+.|++++++--|+.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            4579999999           4788999999999999999988864

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=88.68  E-value=0.2  Score=44.34  Aligned_cols=36  Identities=17%  Similarity=0.138  Sum_probs=31.7

Q ss_pred             CcccEEEEC-CChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            3 EDYDVIVLG-TGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         3 ~~~DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ++-.|+|.| ||..|..++.+|.++|++|+++.|+..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            456799999 499999999999999999999988644

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.57  E-value=0.2  Score=41.21  Aligned_cols=33  Identities=18%  Similarity=0.184  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHhhhCC-CeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~   38 (445)
                      -|+|+|+|..||.+...+...| .+|.++|.++.
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            4999999999999999999999 68999998864

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.09  E-value=0.2  Score=39.65  Aligned_cols=32  Identities=16%  Similarity=0.234  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHhhhCC--CeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG--LKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~n~   37 (445)
                      +|.|||+|--|.++|+.|+.+|  .++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            5899999999999999999888  4899999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=87.95  E-value=0.26  Score=40.01  Aligned_cols=34  Identities=18%  Similarity=0.097  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      -.|+|+|+|..|+.++..+...|.+|++++.++.
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            3589999999999999998899999999987653

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.81  E-value=0.2  Score=40.45  Aligned_cols=32  Identities=22%  Similarity=0.201  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .|+|+|+|..|+.++..+...|.+|.+.+.++
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            58999999999999999999999999998764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=87.45  E-value=0.22  Score=39.74  Aligned_cols=32  Identities=28%  Similarity=0.459  Sum_probs=28.4

Q ss_pred             cEEEECCChhHHHHHHHhhhCC-CeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG-LKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~   37 (445)
                      ++.+||+|--|.+.|..|.++| ++|.+.+|+.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            4899999999999998887777 9999999985

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=87.26  E-value=0.31  Score=35.71  Aligned_cols=37  Identities=16%  Similarity=0.166  Sum_probs=30.8

Q ss_pred             CCCcccEEEECCChhHHHH-HHHhhhCCCeEEEEecCC
Q 036458            1 MDEDYDVIVLGTGLKECIL-SGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         1 m~~~~DViIIGaGl~Gl~a-A~~La~~G~~VlvlE~n~   37 (445)
                      |+....+-+||-|=+|+++ |..|.++|++|+--|.+.
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            5556678888888888766 999999999999999874

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.97  E-value=0.27  Score=39.86  Aligned_cols=33  Identities=18%  Similarity=0.072  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|+|+|.|.-|-.+|..|...|.+|++.|..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            469999999999999999999999999999986

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.66  E-value=0.23  Score=43.37  Aligned_cols=33  Identities=15%  Similarity=0.255  Sum_probs=30.2

Q ss_pred             ccEEEECC-ChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLGT-GLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      .+|+|.|| |.-|..++.+|.++|++|+.+++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            35999997 9999999999999999999999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=86.55  E-value=0.26  Score=40.39  Aligned_cols=33  Identities=15%  Similarity=0.277  Sum_probs=29.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      -.|+|+|+|..|+.++..+...|. +|++.|.++
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            469999999999999999999995 799999874

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.22  E-value=0.23  Score=42.05  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=29.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      ..+|+|||+|-+|.=+|..|++++.+++++=+.
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            357999999999999999999999998888555

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.20  E-value=0.53  Score=35.41  Aligned_cols=40  Identities=23%  Similarity=0.171  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCCeEEEEecCCC-CCCccc
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAY-YGGEST   44 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~-~GG~~~   44 (445)
                      ..|.|||+|==|-..|.+..+-|++|.++|.++. +....+
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~va   52 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVA   52 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGS
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCchhhcC
Confidence            5799999999999999999999999999998744 444433

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.14  E-value=0.39  Score=39.82  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=29.9

Q ss_pred             ccEEEEC-CChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            5 YDVIVLG-TGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ..|+|.| +|-.|..+|..|+++|.+|++++|+.
T Consensus        24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            4688888 69999999999999999999999985

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.84  E-value=0.35  Score=39.64  Aligned_cols=32  Identities=19%  Similarity=0.372  Sum_probs=28.5

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRN   36 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n   36 (445)
                      ...|+|+|+|=++-++++.|++.| +|.|+-|+
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            357999999999999999999888 89999775

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=85.82  E-value=0.19  Score=38.97  Aligned_cols=38  Identities=11%  Similarity=0.263  Sum_probs=28.5

Q ss_pred             CCcccEEEECCChhHHHHHHHhhh-CCCeEE-EEecCCCC
Q 036458            2 DEDYDVIVLGTGLKECILSGVLSV-DGLKVL-HMDRNAYY   39 (445)
Q Consensus         2 ~~~~DViIIGaGl~Gl~aA~~La~-~G~~Vl-vlE~n~~~   39 (445)
                      +.+|.|+|+|||-+|-+++.+|.+ .|++++ .+|-++.-
T Consensus         1 ~~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           1 NRKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             TSCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CCCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            467999999999999999887754 466655 45665543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=85.68  E-value=0.45  Score=39.13  Aligned_cols=35  Identities=17%  Similarity=0.409  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAYY   39 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~~   39 (445)
                      ..|+|+|+|=++-++++.|.+.|. ++.++.|+..-
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~   54 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEF   54 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTT
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHH
Confidence            579999999999999999999985 88899987543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=85.40  E-value=0.85  Score=40.63  Aligned_cols=56  Identities=11%  Similarity=0.195  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHHcCc--EEEeCCcceeEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCC
Q 036458          233 ELPQAFARLSAVYGG--TYMLNKPECKVEFDGDGKVIGVTS-EGETAKCKKVVCDPSYL  288 (445)
Q Consensus       233 ~L~q~l~r~~~~~Gg--~i~l~~~V~~I~~~~~g~~~~v~~-~g~~~~ad~VI~~~~~~  288 (445)
                      ++.+-|.+.++.++-  .|++|++|+++..+++.....|++ ++++++||.||++.+++
T Consensus        86 e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~l  144 (298)
T d1w4xa1          86 EILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  144 (298)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             hHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeeccc
Confidence            343444445555554  599999999999765544455654 78899999999998865

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=85.31  E-value=0.4  Score=37.93  Aligned_cols=32  Identities=19%  Similarity=0.286  Sum_probs=28.0

Q ss_pred             cEEEEC-CChhHHHHHHHhhhCCC--eEEEEecCC
Q 036458            6 DVIVLG-TGLKECILSGVLSVDGL--KVLHMDRNA   37 (445)
Q Consensus         6 DViIIG-aGl~Gl~aA~~La~~G~--~VlvlE~n~   37 (445)
                      +|.||| +|--|.++|+.|..+|.  .+.++|.+.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~   36 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPD   36 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            589999 79999999999999986  788888643

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=85.23  E-value=0.33  Score=39.63  Aligned_cols=34  Identities=18%  Similarity=0.149  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCCeEEEEecCC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~   37 (445)
                      ...|+|+|+|=++-++++.|.+.+.+|.|+-|+.
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            3579999999999999999999999999998884

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=83.92  E-value=0.98  Score=40.36  Aligned_cols=43  Identities=21%  Similarity=0.210  Sum_probs=38.3

Q ss_pred             CCC-cccEEEECCChhHHHHHHHhhhCCCeEEEEecCCCCCCcc
Q 036458            1 MDE-DYDVIVLGTGLKECILSGVLSVDGLKVLHMDRNAYYGGES   43 (445)
Q Consensus         1 m~~-~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~n~~~GG~~   43 (445)
                      |.. .|||||||+|++||+||..|+++|.+|+|+||+...||.+
T Consensus         1 m~~~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~g~S   44 (336)
T d2bs2a2           1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS   44 (336)
T ss_dssp             CCEEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred             CCceecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCch
Confidence            554 4799999999999999999999999999999998877644

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=83.91  E-value=0.49  Score=38.64  Aligned_cols=34  Identities=18%  Similarity=0.173  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~~   38 (445)
                      -.|+|+|+|.-|+.++..+...|. +|++.|.++.
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            358999999999999999999996 6888898764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.90  E-value=0.54  Score=39.17  Aligned_cols=33  Identities=24%  Similarity=0.169  Sum_probs=27.4

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      -.|+|+|+|..|+.++..+...|- +|.+.|.++
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            469999999999999988876664 888988764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=83.88  E-value=0.51  Score=42.66  Aligned_cols=34  Identities=35%  Similarity=0.238  Sum_probs=30.8

Q ss_pred             ccEEEEC-CChhHHHHHHHhhhCCCeEEEEecCCC
Q 036458            5 YDVIVLG-TGLKECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         5 ~DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ..|+|.| +|.-|..++..|.++|++|..++++..
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            5799999 899999999999999999999998643

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.65  E-value=0.46  Score=37.64  Aligned_cols=32  Identities=28%  Similarity=0.231  Sum_probs=26.5

Q ss_pred             cEEEEC-CChhHHHHHHHhhh-C--CCeEEEEecCC
Q 036458            6 DVIVLG-TGLKECILSGVLSV-D--GLKVLHMDRNA   37 (445)
Q Consensus         6 DViIIG-aGl~Gl~aA~~La~-~--G~~VlvlE~n~   37 (445)
                      +|.||| +|--|.++|+.|+. .  +.++.++|.++
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            689999 69999999998864 3  47899999754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=83.45  E-value=0.37  Score=41.73  Aligned_cols=32  Identities=25%  Similarity=0.430  Sum_probs=28.6

Q ss_pred             ccEEEECCChhHHHHHHHhhhCCC-eEEEEecC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDGL-KVLHMDRN   36 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n   36 (445)
                      -.|+|||.|=.|+.+|..|++.|. +++++|..
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            479999999999999999999995 78888754

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=82.97  E-value=0.64  Score=35.79  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=30.7

Q ss_pred             cccEEEECCCh-----------hHHHHHHHhhhCCCeEEEEecCCC
Q 036458            4 DYDVIVLGTGL-----------KECILSGVLSVDGLKVLHMDRNAY   38 (445)
Q Consensus         4 ~~DViIIGaGl-----------~Gl~aA~~La~~G~~VlvlE~n~~   38 (445)
                      ...|+|||+|.           ++.-|+.+|.+.|++|.++.-|+.
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            35799999986           688899999999999999988864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=82.30  E-value=0.62  Score=37.69  Aligned_cols=33  Identities=18%  Similarity=0.166  Sum_probs=27.8

Q ss_pred             cEEEECCChhHHHHHHHhhhCC-CeEEEEecCCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG-LKVLHMDRNAY   38 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~~   38 (445)
                      .|+|+|+|..|+.++..++..| .+|...|+++.
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            3889999999999999888887 57888988753

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=81.69  E-value=0.5  Score=38.12  Aligned_cols=33  Identities=12%  Similarity=0.193  Sum_probs=28.3

Q ss_pred             ccEEEEC-CChhHHHHHHHhhhCC-CeEEEEecCC
Q 036458            5 YDVIVLG-TGLKECILSGVLSVDG-LKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIG-aGl~Gl~aA~~La~~G-~~VlvlE~n~   37 (445)
                      -.|+|+| +|..|+.++..+...| .+|.+.++++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccch
Confidence            3599999 5999999998888888 6999999885

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=81.28  E-value=0.71  Score=37.42  Aligned_cols=32  Identities=19%  Similarity=0.187  Sum_probs=28.4

Q ss_pred             cEEEECCChhHHHHHHHhhhCC-CeEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDG-LKVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~   37 (445)
                      -|+|+|+|-.|++++..++..| .+|...+.++
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            4899999999999999999998 5899998875

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=81.11  E-value=0.72  Score=37.05  Aligned_cols=33  Identities=30%  Similarity=0.406  Sum_probs=29.4

Q ss_pred             cccEEEECCChhHHHHHHHhhhCCC-eEEEEecC
Q 036458            4 DYDVIVLGTGLKECILSGVLSVDGL-KVLHMDRN   36 (445)
Q Consensus         4 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n   36 (445)
                      ...|+|||+|-.|-.+|..|...|. +|++.-|+
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            4579999999999999999999996 69998776

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=81.06  E-value=0.58  Score=38.11  Aligned_cols=32  Identities=13%  Similarity=0.114  Sum_probs=28.5

Q ss_pred             cEEEECCChhHHHHHHHhhhCCC-eEEEEecCC
Q 036458            6 DVIVLGTGLKECILSGVLSVDGL-KVLHMDRNA   37 (445)
Q Consensus         6 DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~n~   37 (445)
                      .|+|+|+|..|+.++..+...|. +|.+.|.++
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            48999999999999999999995 799998874

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=80.76  E-value=0.71  Score=37.32  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=28.1

Q ss_pred             ccEEEECCChhHHHHHHHhhhCC-CeEEEEecCC
Q 036458            5 YDVIVLGTGLKECILSGVLSVDG-LKVLHMDRNA   37 (445)
Q Consensus         5 ~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~n~   37 (445)
                      -.|+|+|+|..|+.++..+...| ..|++.|+++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            46999999999999998887777 5778888886

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=80.61  E-value=0.65  Score=42.31  Aligned_cols=33  Identities=27%  Similarity=0.378  Sum_probs=27.0

Q ss_pred             EEEEC-CChhHHHHHHHhhhCCCeEEEEecCCCC
Q 036458            7 VIVLG-TGLKECILSGVLSVDGLKVLHMDRNAYY   39 (445)
Q Consensus         7 ViIIG-aGl~Gl~aA~~La~~G~~VlvlE~n~~~   39 (445)
                      |+|.| ||.-|..++.+|.++|++|+.+++....
T Consensus         4 vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~   37 (357)
T d1db3a_           4 ALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASS   37 (357)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEECC----
T ss_pred             EEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcc
Confidence            55878 9999999999999999999999997644

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=80.53  E-value=0.37  Score=34.80  Aligned_cols=31  Identities=13%  Similarity=0.034  Sum_probs=23.1

Q ss_pred             EEEECCChhHHH-HHHHhhhCCCeEEEEecCC
Q 036458            7 VIVLGTGLKECI-LSGVLSVDGLKVLHMDRNA   37 (445)
Q Consensus         7 ViIIGaGl~Gl~-aA~~La~~G~~VlvlE~n~   37 (445)
                      |=+||-|=+|++ +|..|.++|++|.--|++.
T Consensus         4 ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           4 IHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            445665555553 3889999999999999875

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.49  E-value=1.1  Score=34.02  Aligned_cols=54  Identities=17%  Similarity=0.144  Sum_probs=37.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCcceeEEEcCCC--cEEEEE--e--CCe--EEEcCEEEECC
Q 036458          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDGDG--KVIGVT--S--EGE--TAKCKKVVCDP  285 (445)
Q Consensus       232 ~~L~q~l~r~~~~~Gg~i~l~~~V~~I~~~~~g--~~~~v~--~--~g~--~~~ad~VI~~~  285 (445)
                      .++.+.+.+..+..|.++++|+.|+++...+++  ....+.  .  +++  ...+|.|+++.
T Consensus        60 ~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~Ai  121 (122)
T d1h6va2          60 QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAV  121 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEe
Confidence            458888888899999999999999999753222  122232  2  223  35689999874