Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value
Query 119
COG3000 271
COG3000, ERG3, Sterol desaturase [Lipid metabolism
1e-15
pfam04116 114
pfam04116, FA_hydroxylase, Fatty acid hydroxylase
2e-10
>gnl|CDD|225546 COG3000, ERG3, Sterol desaturase [Lipid metabolism]
Back Hide alignment and domain information
Score = 70.2 bits (172), Expect = 1e-15
Identities = 40/114 (35%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 2 LYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTTVIFFCFAVIK 61
L H HH VP + AL HPLE LLL LG L+ G++ + F F +
Sbjct: 122 LLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFLGLLPLLLL-GLSPVAVALLFIFLLFW 180
Query: 62 TVDDHSELWLPGNIFHLFFQNNTA-YHDVHHQLKGLKYNYSQPFFSICDRLLGT 114
V HS L LP + L + NT +H +HH NY + DRL GT
Sbjct: 181 AVLIHSNLDLPLPLGWLRYVFNTPRHHRLHHSKDPYDKNYGV-TLTFWDRLFGT 233
>gnl|CDD|217907 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily
Back Show alignment and domain information
Score = 53.7 bits (129), Expect = 2e-10
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTTVIFFCFAVI 60
FL+R H HH P + A HPLE LLL + L L+ G+ ++ +
Sbjct: 24 FLWR-FHKVHHSDESPNPLTAFRFHPLEALLLALIPLLLLLLLFGLHLLVILLGLLLGTL 82
Query: 61 KTVDDHSELWLPGNIFHLFFQNNTAYHDVHH 91
+ HS L L + YH +HH
Sbjct: 83 LYLFIHSGLHLWLPPLLSYLFVTPRYHRLHH 113
This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins. Length = 114
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability
Query
119
COG3000 271
ERG3 Sterol desaturase [Lipid metabolism]
99.95
KOG0873 283
consensus C-4 sterol methyl oxidase [Lipid transpo
99.94
KOG0874 287
consensus Sphingolipid hydroxylase [Lipid transpor
99.92
KOG0872 312
consensus Sterol C5 desaturase [Lipid transport an
99.9
PLN02869
620
fatty aldehyde decarbonylase
99.9
PF04116 114
FA_hydroxylase: Fatty acid hydroxylase superfamily
99.66
PLN02434 237
fatty acid hydroxylase
98.46
PRK07424
406
bifunctional sterol desaturase/short chain dehydro
97.61
KOG0539 240
consensus Sphingolipid fatty acid hydroxylase [Lip
96.02
PF10520 178
Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme
95.43
PLN02601 303
beta-carotene hydroxylase
92.79
KOG3011 293
consensus Ubiquitin-conjugating enzyme [Posttransl
84.5
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Back Hide alignment and domain information
Probab=99.95 E-value=1.5e-28 Score=183.84 Aligned_cols=115 Identities=33% Similarity=0.435 Sum_probs=101.5
Q ss_pred hhchhhhhcCCCCCCccccccccChHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhcCCcccCCccccc--c
Q 036463 2 LYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTTVIFFCFAVIKTVDDHSELWLPGNIFHL--F 79 (119)
Q Consensus 2 ly~~~H~~HH~~~~~~~~~~~~~hp~e~ll~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~--~ 79 (119)
+|+++|++||+.++|+++++.+.||+|.++... ...+++.++|.++.++.++..+..+.++++|||++.| .+.+. .
T Consensus 122 ~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~ 199 (271)
T COG3000 122 LLWAFHKVHHSSEVPDPLTALRFHPLEILLLAF-LGLLPLLLLGLSPVAVALLFIFLLFWAVLIHSNLDLP-LPLGWLRY 199 (271)
T ss_pred HHHHHHHhhcCcccCCchhhhhcChHHHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCcccc-CCccccee
Confidence 467999999999999999999999999999964 6777777889999999999999999999999999987 44332 2
Q ss_pred cccCCcccccCcCCCCCCccCCCCCchhhhhhcCcCCCCC
Q 036463 80 FQNNTAYHDVHHQLKGLKYNYSQPFFSICDRLLGTHMSYQ 119 (119)
Q Consensus 80 ~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~ 119 (119)
++++|++|++||++++.++|||. .+++|||+|||+..++
T Consensus 200 v~~~p~~H~lHH~~~~~~~Nyg~-~~~~WDrlFGT~~~~~ 238 (271)
T COG3000 200 VFNTPRHHRLHHSKDPYDKNYGV-TLTFWDRLFGTYHPPD 238 (271)
T ss_pred eecCchHHHHhccCCCCCCcchh-hhHHHHHHcccCCCCc
Confidence 57999999999999855699996 7999999999998763
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Back Show alignment and domain information
Probab=99.94 E-value=6.3e-28 Score=178.89 Aligned_cols=115 Identities=30% Similarity=0.459 Sum_probs=103.7
Q ss_pred ChhchhhhhcCCCCCCccccccccChHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhcCCcccCCccccc-c
Q 036463 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTTVIFFCFAVIKTVDDHSELWLPGNIFHL-F 79 (119)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~e~ll~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~-~ 79 (119)
|+||.+||+||+.++|.+.++.+.||+|.++.++.+... +++++.|+.+.+++++++.+..+..||||++||.+.|. +
T Consensus 146 ~~Yk~iHKvHHe~taPf~~sa~YaHp~E~~~lg~~~~~~-p~~~~~H~~t~wiw~~l~i~~t~~~HsGY~fPwsl~~~~p 224 (283)
T KOG0873|consen 146 WLYKYIHKVHHEYTAPFGLSAEYAHPLEHLFLGLGTVMG-PALLCGHVITLWIWIALRILETVESHSGYDFPWSLSKLIP 224 (283)
T ss_pred HHHHHHHhhhhcccCchhHhhhhcCHHHHHHcCChhhhh-hHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCccccccCc
Confidence 689999999999999999999999999999998644444 44556699999999999999999999999999998876 5
Q ss_pred cccCCcccccCcCCCCCCccCCCCCchhhhhhcCcCCCCC
Q 036463 80 FQNNTAYHDVHHQLKGLKYNYSQPFFSICDRLLGTHMSYQ 119 (119)
Q Consensus 80 ~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~ 119 (119)
+.++++.||+||..+ .+||+. .|+.|||++||.+.|+
T Consensus 225 fy~ga~~HD~HH~~f--~~n~~~-~f~~~D~i~GTd~~~~ 261 (283)
T KOG0873|consen 225 FYGGAEHHDYHHLVF--IGNFAS-VFGYLDRIHGTDSTYR 261 (283)
T ss_pred ccCCCcccchhhhhc--cccccc-hhHHHHHHhccCccHh
Confidence 788999999999998 779996 8999999999999875
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Back Show alignment and domain information
Probab=99.92 E-value=9.7e-28 Score=172.40 Aligned_cols=118 Identities=71% Similarity=1.308 Sum_probs=112.0
Q ss_pred ChhchhhhhcCCCCCCccccccccChHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhcCCcccCCccccccc
Q 036463 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTTVIFFCFAVIKTVDDHSELWLPGNIFHLFF 80 (119)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~e~ll~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~~~ 80 (119)
+|||.+|++||+-..|.+..+.++||+|.++..+++..+..++-|+++.+.++++.+.++-.+-.|||+.+|..|..+.+
T Consensus 149 ~LYk~iHs~HHrL~VPYayGALyNhP~EGllLDT~G~gla~l~sglspr~aiifFtfaTiKTVDDHCGy~lP~dpfqm~F 228 (287)
T KOG0874|consen 149 FLYKHIHSQHHRLIVPYAYGALYNHPVEGLLLDTIGGGLAFLLSGLSPRTAIIFFTFATIKTVDDHCGYWLPGDPFQMFF 228 (287)
T ss_pred HHHHHHHhhceeEecchhhhhhhcCcchhhhhhhhchHHHHHHcCCCccceEEEEEeeeeeeeccccccccCCCceeEec
Confidence 48999999999999999999999999999999999999999899999999999999999999999999999999988778
Q ss_pred ccCCcccccCcCCCCCCccCCCCCchhhhhhcCcCCCC
Q 036463 81 QNNTAYHDVHHQLKGLKYNYSQPFFSICDRLLGTHMSY 118 (119)
Q Consensus 81 ~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~ 118 (119)
-+.+++||+||...+.++||++++|++|||++||+.+|
T Consensus 229 ~NNa~YHDiHHQ~yG~k~NFsQPFFtfWD~ilgTYmp~ 266 (287)
T KOG0874|consen 229 PNNAAYHDIHHQLYGTKYNFSQPFFTFWDRILGTYMPY 266 (287)
T ss_pred cCCchhhhhhhhhhccccccCCcHHHHHHHHHhhcCCc
Confidence 89999999999998779999999999999999999987
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Back Show alignment and domain information
Probab=99.90 E-value=7.3e-25 Score=161.47 Aligned_cols=111 Identities=26% Similarity=0.393 Sum_probs=101.3
Q ss_pred ChhchhhhhcCCCCCCccccccccChHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhcCCcccCCccccccc
Q 036463 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTTVIFFCFAVIKTVDDHSELWLPGNIFHLFF 80 (119)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~e~ll~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~~~ 80 (119)
.+||+.|+.||+.+..+|+++.++||+|.++++ +|..+.++++|+|+.+++....+..++.+.+|.|.-.... +.
T Consensus 154 ~vy~~LH~~HH~~~~~tpfAslafhpidg~lqa-ip~~I~~Fi~Plh~~t~L~l~~f~~iwt~~IHd~~~~~l~----~~ 228 (312)
T KOG0872|consen 154 GVYKRLHKPHHIWNICTPFASLAFHPIDGFLQA-IPYHIYPFIFPLHKVTYLSLFTFVNIWTISIHDGIYGSLN----PP 228 (312)
T ss_pred HHHhhhcchhhhhhccCchhhhhcCcchhHhhh-chhHheeeeecchHHHHHHHHHHHHhHheeeecccccccc----Cc
Confidence 379999999999999999999999999999996 7999999999999999999999999999999999854322 24
Q ss_pred ccCCcccccCcCCCCCCccCCCCCchhhhhhcCcCCCCC
Q 036463 81 QNNTAYHDVHHQLKGLKYNYSQPFFSICDRLLGTHMSYQ 119 (119)
Q Consensus 81 ~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~ 119 (119)
+++|.+|+.||.+. |.|||+ ++++|||+|||++.|+
T Consensus 229 ingaahHtvHH~~f--~~NYG~-~tilwDrmfgSfr~p~ 264 (312)
T KOG0872|consen 229 INGAAHHTVHHTYF--DYNYGQ-YTILWDRMFGSFRAPD 264 (312)
T ss_pred cccccccceeeeeE--ecCCCc-EEEeHHhccCcccCcc
Confidence 79999999999997 899997 9999999999999874
>PLN02869 fatty aldehyde decarbonylase
Back Show alignment and domain information
Probab=99.90 E-value=4e-24 Score=172.00 Aligned_cols=113 Identities=26% Similarity=0.431 Sum_probs=87.5
Q ss_pred ChhchhhhhcCCCCCCccccccccChH-HHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHHHHhcCCcc-cCCc
Q 036463 1 FLYRHIHSQHHRLVVPYAIGALYNHPL-EGLLLDTLGGALSFLV----SGMTARTTVIFFCFAVIKTVDDHSELW-LPGN 74 (119)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~-e~ll~~~~~~~l~~~l----~~~~~~~~~~~~~~~~~~~~~~Hsg~~-~p~~ 74 (119)
++|+++|++||++++|+|+++. .||+ |.+... +...+|+++ .+.+..++.+++++..+.++++|||++ +|+.
T Consensus 153 ~LYwr~HkvHHss~~~~P~Ts~-~HP~~E~L~y~-ll~~IPLllli~~g~~hi~t~~~yli~~~f~~~~gHSN~El~P~~ 230 (620)
T PLN02869 153 YLYSRYHSHHHSSIVTEPITSV-IHPFAEHIAYF-LLFAIPLLTTIFTGTASIAAFFGYISYIDFMNNMGHCNFELIPKW 230 (620)
T ss_pred HHHHHHHhhccCCCCCCchhhh-cCcHHHHHHHH-HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcccccCccccccc
Confidence 5899999999999999999886 7886 544432 223333332 235778888888889999999999998 4654
Q ss_pred cccc-----ccccCCcccccCcCCCCCCccCCCCCchhhhhhcCcCCCC
Q 036463 75 IFHL-----FFQNNTAYHDVHHQLKGLKYNYSQPFFSICDRLLGTHMSY 118 (119)
Q Consensus 75 ~~~~-----~~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~ 118 (119)
+.+. .++++|++|++||++. ++|||. +|++|||+|||+.+.
T Consensus 231 ~~~~~ppLkyll~TPsfHdlHHs~f--d~NYGl-fF~~WDrLFGT~d~~ 276 (620)
T PLN02869 231 LFSIFPPLKYLMYTPSYHSLHHTQF--RTNYSL-FMPIYDYIYGTMDKS 276 (620)
T ss_pred hhccCCcchheecCchHHhHHhccC--CcCccc-chHHHHhccCCCCCC
Confidence 3221 1478999999999987 899996 899999999999763
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases
Back Show alignment and domain information
Probab=99.66 E-value=1.3e-16 Score=104.05 Aligned_cols=91 Identities=27% Similarity=0.295 Sum_probs=76.7
Q ss_pred ChhchhhhhcCCCCCCccccccccChHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhcCCcccCCccccccc
Q 036463 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTTVIFFCFAVIKTVDDHSELWLPGNIFHLFF 80 (119)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~e~ll~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~~~ 80 (119)
++| ++|+.||+.++|+++++.+.+|+|.++...++..++.++.+.++.++.+..++..+.+.++|||+..+..+....+
T Consensus 24 ~l~-~~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~ 102 (114)
T PF04116_consen 24 FLW-RIHKVHHSPKNPTPLSAFRFHPLEALLLALLPLLLPLLLLPFHALAFLLGIALFYLWYIFIHSGYHHRFPPRLRYL 102 (114)
T ss_pred hHH-HHHHHHhCCcccCchHHHHcChHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhcCccCCCCCcchhH
Confidence 478 8999999999999999999999999999876666666778999999999999999999999999933222221235
Q ss_pred ccCCcccccCcC
Q 036463 81 QNNTAYHDVHHQ 92 (119)
Q Consensus 81 ~~~~~~H~~HH~ 92 (119)
..+|+.|++||+
T Consensus 103 ~~~~~~H~~HH~ 114 (114)
T PF04116_consen 103 FVTPRHHDLHHS 114 (114)
T ss_pred hcCHHHHHhhCc
Confidence 789999999995
Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
>PLN02434 fatty acid hydroxylase
Back Show alignment and domain information
Probab=98.46 E-value=3.4e-07 Score=67.57 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=28.8
Q ss_pred CcccccCcCCCCCCccCCCCCchhhhhhcCcCCCCC
Q 036463 84 TAYHDVHHQLKGLKYNYSQPFFSICDRLLGTHMSYQ 119 (119)
Q Consensus 84 ~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~ 119 (119)
=+.|..||-++. +.|||. -.++|||+|||..+.+
T Consensus 198 kr~H~~HHfk~~-~~~fGV-Ts~~wD~vFGT~~~~~ 231 (237)
T PLN02434 198 KKYHLNHHFRDQ-DKGFGI-TSSLWDRVFGTLPPSK 231 (237)
T ss_pred HHHHHHHcCCCC-CCCCCc-CchHHHHhcCCCCCcc
Confidence 678999998874 789997 6999999999987643
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Back Show alignment and domain information
Probab=97.61 E-value=0.00011 Score=58.18 Aligned_cols=113 Identities=27% Similarity=0.334 Sum_probs=64.9
Q ss_pred ChhchhhhhcCCCCCCccc---------cccccChHHHHHHHHHHHHHHHHhcC----C------cHHHHHHHH---HHH
Q 036463 1 FLYRHIHSQHHRLVVPYAI---------GALYNHPLEGLLLDTLGGALSFLVSG----M------TARTTVIFF---CFA 58 (119)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~---------~~~~~hp~e~ll~~~~~~~l~~~l~~----~------~~~~~~~~~---~~~ 58 (119)
||| |.|..||+.-.++-- +..+..|.|++++..+...+..++.. - .....+.|. ++.
T Consensus 35 ~l~-~~h~~hh~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 113 (406)
T PRK07424 35 PLY-RLHNWHHRVFRPDLSVVSEEIYRKAHWYNDVPEALVMLLFGTLPVLLLQQWNVPYGWLAWLGVLYTLTFLFGAIAR 113 (406)
T ss_pred HHH-HHHHhHHhhcCCcCCcccHHHHhhhhhhcCCHHHHHHHHHhhHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHH
Confidence 567 799999999866532 46778999987776554444433221 1 111111222 111
Q ss_pred HHHHHHhc-CCcccCCcc--c-ccc--cccCCcccccCcCCCCCCccCCCCCchhhhhhcCcCCC
Q 036463 59 VIKTVDDH-SELWLPGNI--F-HLF--FQNNTAYHDVHHQLKGLKYNYSQPFFSICDRLLGTHMS 117 (119)
Q Consensus 59 ~~~~~~~H-sg~~~p~~~--~-~~~--~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~ 117 (119)
+. ++... ++-|..-.| . +.+ ++..+.+|-.||-.+. +.-|+. .+++-|+..||..+
T Consensus 114 ~~-~~~~~~~~~d~~h~~~~~~~~~~~~~v~~~~h~rh~~~~~-~~~~~~-~~~~~d~~~~ta~s 175 (406)
T PRK07424 114 GL-GLPNADELTDLTHLPGPFETLPSQWFVNRPYHWRHHFDNQ-NAYYCG-TFTLVDKLMGTALS 175 (406)
T ss_pred hc-ccccccccccccCCCCcccCCCccCeecCceeEEEEeccc-cceeee-eEEEeehhcCcccC
Confidence 11 22233 223332111 1 111 4677899999997653 456775 89999999999643
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Back Show alignment and domain information
Probab=96.02 E-value=0.013 Score=42.67 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=26.5
Q ss_pred CcccccCcCCCCCCccCCCCCchhhhhhcCcCCC
Q 036463 84 TAYHDVHHQLKGLKYNYSQPFFSICDRLLGTHMS 117 (119)
Q Consensus 84 ~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~ 117 (119)
-++|.-||-+.. +..||- -.++||++|||.-+
T Consensus 201 K~yHl~HHfk~q-~~GfGI-tS~lWD~VFgTl~~ 232 (240)
T KOG0539|consen 201 KKYHLNHHFKHQ-DLGFGI-TSSLWDYVFGTLGP 232 (240)
T ss_pred HHHHhhhhhhcc-ccCccc-cHHHHHHHhccCCC
Confidence 567888887764 789997 59999999999865
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1
Back Show alignment and domain information
Probab=95.43 E-value=0.031 Score=39.78 Aligned_cols=56 Identities=18% Similarity=0.078 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCcccCCcc--c-ccccccCCcccccCcCCCCCCccCCCCCchhhhhhcCc
Q 036463 57 FAVIKTVDDHSELWLPGNI--F-HLFFQNNTAYHDVHHQLKGLKYNYSQPFFSICDRLLGT 114 (119)
Q Consensus 57 ~~~~~~~~~Hsg~~~p~~~--~-~~~~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT 114 (119)
++...--+.|.....|..- + +.=++.+++.|..||... .+.|||. +.++|+.+...
T Consensus 97 ~tnq~HkWsH~~~~~P~~V~~LQ~~gillsr~~H~~HH~aP-h~~~YCI-~tGw~N~~Ld~ 155 (178)
T PF10520_consen 97 FTNQFHKWSHTYKSLPPWVRFLQDAGILLSRKHHRIHHVAP-HDTNYCI-TTGWLNPPLDK 155 (178)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHCCcccCchhhhccccCc-ccCCeEe-ecccchHHHHH
Confidence 3333445677755555221 1 112678999999999874 4889996 89999887643
UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
>PLN02601 beta-carotene hydroxylase
Back Show alignment and domain information
Probab=92.79 E-value=0.096 Score=39.61 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=23.8
Q ss_pred HHhcCCc---ccCCccc-cc-ccccCCcccccCcCCCCCCccCCC
Q 036463 63 VDDHSEL---WLPGNIF-HL-FFQNNTAYHDVHHQLKGLKYNYSQ 102 (119)
Q Consensus 63 ~~~Hsg~---~~p~~~~-~~-~~~~~~~~H~~HH~~~~~~~Nyg~ 102 (119)
.+.|.++ ++|+.+. +. .+-.-.+-|++||+...+..+||.
T Consensus 225 ffVHDgLVHqRfp~~~~a~~~Y~rrl~~AHklHHa~Ke~Gv~FGf 269 (303)
T PLN02601 225 MFVHDGLVHKRFPVGPIANVPYLRKVAAAHQLHHTDKFKGVPYGL 269 (303)
T ss_pred HHHhhhhhccccccCCCCCCHHHHHHHHHHHhhccCCcCCccceE
Confidence 4677777 5665532 11 122236789999983223678885
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=84.50 E-value=1.7 Score=32.65 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhcCCcccCCc--ccc-cccccCCcccccCcCCCCCCccCCCCCchhhhhh
Q 036463 52 VIFFCFAVIKTVDDHSELWLPGN--IFH-LFFQNNTAYHDVHHQLKGLKYNYSQPFFSICDRL 111 (119)
Q Consensus 52 ~~~~~~~~~~~~~~Hsg~~~p~~--~~~-~~~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~l 111 (119)
.++.+++.-+--+.|.=..+|.. .++ .-++..-.+|+.||... .++||+- ..++|.+.
T Consensus 199 ~i~v~~tnQiHkWsHTy~gLP~wVv~LQd~hlilpRkhH~iHH~aP-h~~yyCI-~tGw~N~~ 259 (293)
T KOG3011|consen 199 AICVLFTNQIHKWSHTYSGLPPWVVLLQDMHLILPRKHHRIHHVAP-HNTYYCI-VSGWWNWV 259 (293)
T ss_pred HHHHHHHHHHHHHHhhhccCchHHHHHhhcceecccccccccccCc-cccceEE-eechhhch
Confidence 34555566666778855566632 111 11456678899999775 5889996 78888764
Homologous Structure Domains