Citrus Sinensis ID: 036516

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------71
Protein Sequence
GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSRRYKLDVRRAICKSKQNSLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQPKESRHELKSIQ
Secondary Structure (PSIPRED)
ccEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccEEEEHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHcccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccEEEEEEEccccccHHHHHHHHHccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEEEEEccccccHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHHHHHHccccEEEEEcccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHcccEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccccHHHHcccccccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcHHcccccHccccccccEEEEEEccccccHHHHHHHHHHcccccccEEEEEEEEEEcccccccEEEHcccccccccccHHHHHHHHHHHHHHccccEEEEEEEEEccHHHHHHHHHHHHHHccEEEEEEEccccccccccEccccHHHHHHHHHHHHccccEEEEEEEccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEccccccccccHHHHHHHcHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHcccccEEEEEccccccccHHcccccHHHcccccccHHHcccccccEEEEEEEEcccccccHccccc
Coil and Loop (DISEMBL)
ggalmgpsllreipyldglfpmgsrYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRIshlddetaSSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDsqdnlttikplYITLVVIVYYIIVIFLVRPLtmrivsknseeesmnqNHFIITICIVLVTTILGTLVGQNSILTAFFFglclpdgpplgtqlvqkldfftsgfllPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVgylydpsrrykLDVRRAICKSKQNSLRILVCIHKEQNVNPLISLLevsnptrnspIAAFVLQLMELKGSvtaflkphhqqtkseaASSTQLINAFTQFQRCYYGHVVVQhfttiapyatmhDDVCTLALDKRVVIIIVPfhkqwgvggilestDLSIRALNRnvlhkapcsvgilvhrgqnksnrpvytGELLYHIVMLFIGGADDREALAYSRrmaehpntsLTVVWFITtdqnrpstempddheldnqafdefkdsmvgnkiiFREEIVKDGIGTTQVIQAFAETFDLFIvgknhdpcckatlglsewieypelgilgdtlvnsndEFSVLVVQQQPKESRHELKSIQ
Flexible Loop (DISEMBL)
GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSRRYKLDVRRAICKSKQNSLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVpfhkqwgvggILESTDLSIRALNRNVLHKAPCSVGilvhrgqnksnrPVYTGELLYHIVMLFIGGADDREALAYSRRMaehpntsltvVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLvvqqqpkesrhelksiq
Low Complexity Region (SEG)
GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETassiaasvvvNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPlyitlvvivyyiiviflvRPLTMRIVSKNSEEESMNQNHFiiticivlvttilgtlvgQNSILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMviitgisttivgYLYDPSRRYKLDVRRAICKSKQNSLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQPKESRHELKSIQ
Disordered region (IsUnstruct)
********LLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLVRPLTMRIVS*********QNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSRRYKLDVRRAICKSKQNSLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLK**************QLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITT**********************FKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVV***************
Disordered Region (DISOPRED)
GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSR*****************LRILVCIHKEQNVNPLISLLEVSN****SPIAAFVLQLMELKGS************************AFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWG******S*DLSIRALNRNVLHKAPCSVGILVHRGQNKSNR**YTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFIT***************LDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKN***************EYPELGILGDTLVNSNDEFSVLVV***************
Disordered Region (DISEMBL)
GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSRRYKLDVRRAICKSKQNSLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFL*************STQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ*********DHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ**************
Disordered Region (DISPRO)
GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSRRYKLDVRRAICKSKQNSLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQPKE*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSRRYKLDVRRAICKSKQNSLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQPKESRHELKSIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	709	2.2.26 [Sep-21-2011]
Q9LMJ1	829	Cation/H(+) antiporter 14	yes	no	0.973	0.832	0.367	1e-141
O22920	831	Cation/H(+) symporter 13	no	no	0.963	0.821	0.365	1e-137
Q9SIT5	821	Cation/H(+) antiporter 15	no	no	0.971	0.839	0.361	1e-123
Q9FFB8	822	Cation/H(+) antiporter 3	no	no	0.971	0.838	0.330	1e-100
Q9FYC1	817	Cation/H(+) antiporter 4	no	no	0.928	0.805	0.334	1e-100
Q58P71	816	Cation/H(+) antiporter 8	no	no	0.922	0.801	0.315	5e-89
Q58P69	783	Cation/H(+) antiporter 10	no	no	0.943	0.854	0.308	6e-88
Q8VYD4	867	Cation/H(+) antiporter 23	no	no	0.984	0.805	0.295	2e-86
Q9FFR9	810	Cation/H(+) antiporter 18	no	no	0.967	0.846	0.319	2e-84
Q9FFB7	800	Cation/H(+) antiporter 9	no	no	0.946	0.838	0.303	4e-84

>sp|Q9LMJ1|CHX14_ARATH Cation/H(+) antiporter 14 OS=Arabidopsis thaliana GN=CHX14 PE=2 SV=1

 Score =  502 bits (1292), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 263/716 (36%), Positives = 428/716 (59%), Gaps = 26/716 (3%)

Query: 1   GGALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRA 59
            G ++GPSL  +   Y+    P+  +  L+T +  G  +H F+LG++ID  +++    +A
Sbjct: 85  AGIILGPSLFGQSSAYMQMFLPISGKITLQTLSNLGFFIHLFLLGLRIDASIIRKAGSKA 144

Query: 60  VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKM 119
           ++IG  S  LP   G  +   ++   +L  +    I+  + +N+MTS  V T +L EL +
Sbjct: 145 ILIGTASYALPFSLGNLTVLFLKNTYNLPPDVVHCISTVISLNAMTSFPVTTTVLAELNI 204

Query: 120 LNSELGRLAASITIVSHIFGWSASMIL-LSVRDSQDNLTTIKPLYITLVVIVYYIIVIFL 178
           LNS+LGRLA + +IV   F W  +++  + +RD      T+  ++  + V    +++ F+
Sbjct: 205 LNSDLGRLATNCSIVCEAFSWIVALVFRMFLRDG-----TLASVWSFVWVTALILVIFFV 259

Query: 179 VRPLTMRIVSKNSEE-ESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGP 237
            RP  + +  + S   +   +  F   I ++L  ++   ++G ++   AF+ G+ LPDGP
Sbjct: 260 CRPAIIWLTERRSISIDKAGEIPFFPIIMVLLTISLTSEVLGVHAAFGAFWLGVSLPDGP 319

Query: 238 PLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMV 297
           PLGT L  KL+ F +  +LP F +ISG++   ++I E     IE +IL++Y  KF G   
Sbjct: 320 PLGTGLTTKLEMFATSLMLPCFISISGLQTNFFIIGESHVKIIEAVILITYGCKFLGTAA 379

Query: 298 PSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTT 357
            S +  +    A  LAL+MCC+G+ EI    MWKD K++  + F ++I  ++++TGIS  
Sbjct: 380 ASAYCNIQIGDAFSLALLMCCQGVIEIYTCVMWKDEKVLNTECFNLLIITLLLVTGISRF 439

Query: 358 IVGYLYDPSRRYKLDVRRAICKSKQNSL--RILVCIHKEQNVNPLISLLEVSNPTRNSPI 415
           +V  LYDPS+RY+   +R I  ++Q +L  R+L+C++  +NV  +++LLE S P+R SPI
Sbjct: 440 LVVCLYDPSKRYRSKSKRTILDTRQRNLQFRLLLCVYNVENVPSMVNLLEASYPSRFSPI 499

Query: 416 AAFVLQLMELKGSVTAFLKPHHQQTK--SEAASSTQLINAFTQFQRCYYGHVVVQHFTTI 473
           + F L L+ELKG   A L PHHQ  K       ST ++N F +F++   G ++ QHFT  
Sbjct: 500 SVFTLHLVELKGRAHAVLVPHHQMNKLDPNTVQSTHIVNGFQRFEQQNQGTLMAQHFTAA 559

Query: 474 APYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGI 533
           AP+++++DD+CTLALDK+  +I++PFHKQ+ + G ++  + SIR +N NVL KAPCSVGI
Sbjct: 560 APFSSINDDICTLALDKKATLIVIPFHKQYAIDGTVDHVNPSIRNINLNVLEKAPCSVGI 619

Query: 534 LVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ 593
            + RG+ +  R V       ++ ++FI G DD EALA+S R+AEHP  S+T++ F     
Sbjct: 620 FIDRGETEGRRSVLMSYTWRNVAVIFIEGRDDAEALAFSMRIAEHPEVSVTMIHF----- 674

Query: 594 NRPSTEMPDDHELDNQA-------FDEFKD-SMVGNKIIFREEIVKDGIGTTQVIQAFAE 645
            R  + +  +H +D ++        ++FK+ +M   KI +REEIV+DG+ TTQVI +  +
Sbjct: 675 -RHKSSLQQNHVVDVESELAESYLINDFKNFAMSKPKISYREEIVRDGVETTQVISSLGD 733

Query: 646 TFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQPKES 701
           +FDL +VG++HD       GL++W E PELG++GD   +S+  FSVLV+ QQ  +S
Sbjct: 734 SFDLVVVGRDHDLESSVLYGLTDWSECPELGVIGDMFASSDFHFSVLVIHQQEGDS 789

May operate as a cation/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)

>sp|O22920|CHX13_ARATH Cation/H(+) symporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1

 Score =  488 bits (1256), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/712 (36%), Positives = 421/712 (59%), Gaps = 29/712 (4%)

Query: 2   GALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAV 60
           G ++GPS L   + Y++   P G + +++T +  G ++H F+LG++ID  +++    +A+
Sbjct: 88  GVVLGPSFLGHNVIYMNMFLPAGGKIIIQTLSNVGFVIHLFLLGLKIDGSIIRKAGSKAI 147

Query: 61  IIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKML 120
           +IG  S   P   G  +   + +   L  +  S  ++++ ++SMTS  V T +L EL +L
Sbjct: 148 LIGTASYAFPFSLGNLTIMFISKTMGLPSDVISCTSSAISLSSMTSFPVTTTVLAELNIL 207

Query: 121 NSELGRLAASITIVSHIFGWSASMIL-LSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLV 179
           NSELGRLA   ++V  +  W  ++   L  RD      T+  LY   ++I   +++ F+ 
Sbjct: 208 NSELGRLATHCSMVCEVCSWFVALAFNLYTRDR-----TMTSLYALSMIIGLLLVIYFVF 262

Query: 180 RPLTMRIVSKNSEEESMNQNH---FIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDG 236
           RP+ + +  + ++  SM++     F   + ++ + ++ G  +G ++   AF+ G+ LPDG
Sbjct: 263 RPIIVWLTQRKTK--SMDKKDVVPFFPVLLLLSIASLSGEAMGVHAAFGAFWLGVSLPDG 320

Query: 237 PPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLI---NEKSFIKIEFIILMSYLGKFT 293
           PPLGT+L  KL+ F S   LP F AISG++   + I   +E   + IE I+L++Y  KF 
Sbjct: 321 PPLGTELAAKLEMFASNLFLPCFIAISGLQTNFFEITESHEHHVVMIEIILLITYGCKFL 380

Query: 294 GVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITG 353
           G    S +       A CLA +MCC+GI E+    +WKD +++  + F ++I  ++ +TG
Sbjct: 381 GTAAASAYCQTQIGDALCLAFLMCCQGIIEVYTTIVWKDAQVVDTECFNLVIITILFVTG 440

Query: 354 ISTTIVGYLYDPSRRYKLDVRRAICKSKQNSLRILVCI--HKEQNVNPLISLLEVSNPTR 411
           IS  +V YLYDPS+RYK   +R I  ++Q++L++ + +  +  +NV  +++LLE + PTR
Sbjct: 441 ISRFLVVYLYDPSKRYKSKSKRTILNTRQHNLQLRLLLGLYNVENVPSMVNLLEATYPTR 500

Query: 412 NSPIAAFVLQLMELKGSVTAFLKPHHQQTK--SEAASSTQLINAFTQFQRCYYGHVVVQH 469
            +PI+ F L L+ELKG   A L PHHQ  K     A ST ++NAF +F++ Y G ++ QH
Sbjct: 501 FNPISFFTLHLVELKGRAHALLTPHHQMNKLDPNTAQSTHIVNAFQRFEQKYQGALMAQH 560

Query: 470 FTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPC 529
           FT  APY+++++D+CTLALDK+  +I++PFHKQ+ + G +   +  IR +N NVL  APC
Sbjct: 561 FTAAAPYSSINNDICTLALDKKATLIVIPFHKQYAIDGTVGQVNGPIRTINLNVLDAAPC 620

Query: 530 SVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFI 589
           SV I + RG+ +  R V       ++ MLFIGG DD EALA   RMAE P+ ++T++ F 
Sbjct: 621 SVAIFIDRGETEGRRSVLMTNTWQNVAMLFIGGKDDAEALALCMRMAEKPDLNVTMIHF- 679

Query: 590 TTDQNRPSTEMPDDHELDNQAFDEFKD--SMVGN--KIIFREEIVKDGIGTTQVIQAFAE 645
                R  + + D+   D   ++   D  S   N  KI + EEIV+DG+ TTQVI +  +
Sbjct: 680 -----RHKSALQDEDYSDMSEYNLISDFKSYAANKGKIHYVEEIVRDGVETTQVISSLGD 734

Query: 646 TFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQ 697
            +D+ +VG++HD       GL++W E PELG++GD L + +  FSVLVV QQ
Sbjct: 735 AYDMVLVGRDHDLESSVLYGLTDWSECPELGVIGDMLTSPDFHFSVLVVHQQ 786

High-affinity potassium transporter that plays a role in K(+) acquisition. May operate as a K(+)/H(+) symporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIT5|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1

 Score =  443 bits (1139), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 262/724 (36%), Positives = 422/724 (58%), Gaps = 35/724 (4%)

Query: 1   GGALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRA 59
           GG ++GPS+L R   +   +FP  S  VL T A  G++   F++GV++D+ +V+   KRA
Sbjct: 72  GGIVLGPSVLGRSTKFAHTIFPQRSVMVLETMANVGLLYFLFLVGVEMDIMVVRKTGKRA 131

Query: 60  VIIGITSTLLPLVFGLS-SFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELK 118
           + I I   +LP + G + SF + +   HL   T   I    V  S+T+  V+  +L ELK
Sbjct: 132 LTIAIGGMVLPFLIGAAFSFSMHRSEDHLGQGT--YILFLGVALSVTAFPVLARILAELK 189

Query: 119 MLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFL 178
           ++N+E+GR++ S  +V+ +F W    + +++ +S    T+   L++ +   V+  + +F+
Sbjct: 190 LINTEIGRISMSAALVNDMFAWILLALAIALAESDK--TSFASLWVMISSAVFIAVCVFV 247

Query: 179 VRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPP 238
           VRP    I+ K  E E+ ++ H  + +  V+++  +   +G +S+  AF FGL +P+GP 
Sbjct: 248 VRPGIAWIIRKTPEGENFSEFHICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGP- 306

Query: 239 LGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLIN-EKSFIKIEFIILMSYLGKFTGVMV 297
           LG  L++KL+ F SG LLP+F AISG++  +  I    +++ +  +I ++  GK  G ++
Sbjct: 307 LGLTLIEKLEDFVSGLLLPLFFAISGLKTNIAAIQGPATWLTLFLVIFLACAGKVIGTVI 366

Query: 298 PSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTT 357
            + F GM   +   L L++  +G+ E+ V  + KD+K++ ++ FA M+   +++TG+ T 
Sbjct: 367 VAFFHGMPVREGITLGLLLNTKGLVEMIVLNVGKDQKVLDDETFATMVLVALVMTGVITP 426

Query: 358 IVGYLYDPSRRYKLDVRRAICKSKQNS-LRILVCIHKEQNVNPLISLLEVSNPTRNSPIA 416
           IV  LY P ++     RR I ++K +S LR+LVC+H  +NV  +I+LLE S+PT+ SPI 
Sbjct: 427 IVTILYKPVKKSVSYKRRTIQQTKPDSELRVLVCVHTPRNVPTIINLLEASHPTKRSPIC 486

Query: 417 AFVLQLMELKGSVTAFLKPHHQQTKSEAA------SSTQLINAFTQFQRCYYGHVVVQHF 470
            +VL L+EL G  +A L  H+ +     A       S  +INAF  +++ +   V VQ  
Sbjct: 487 IYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQ-HAAFVAVQPL 545

Query: 471 TTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCS 530
           T I+PY+TMH+DVC+LA DKRV  II+PFHKQ  V G +EST+ + R +N+N+L  +PCS
Sbjct: 546 TAISPYSTMHEDVCSLAEDKRVSFIIIPFHKQQTVDGGMESTNPAYRLVNQNLLENSPCS 605

Query: 531 VGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFI- 589
           VGILV RG N + R + +  +   + +LF GG DDREALAY+ RMA+HP  +LTV+ FI 
Sbjct: 606 VGILVDRGLNGATR-LNSNTVSLQVAVLFFGGPDDREALAYAWRMAQHPGITLTVLRFIH 664

Query: 590 ---------TTDQNRPSTEMPD-DHELDNQAFDEF-----KDSMVGNKIIFREEIVKDGI 634
                    T   N    ++P  DH    Q  D++      ++     I++ E++V +G 
Sbjct: 665 DEDEADTASTRATNDSDLKIPKMDHRKQRQLDDDYINLFRAENAEYESIVYIEKLVSNGE 724

Query: 635 GTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSN--DEFSVL 692
            T   +++   + DLFIVG+        T GL++W E PELG +GD L +S+     SVL
Sbjct: 725 ETVAAVRSMDSSHDLFIVGRGEGMSSPLTAGLTDWSECPELGAIGDLLASSDFAATVSVL 784

Query: 693 VVQQ 696
           VVQQ
Sbjct: 785 VVQQ 788

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFB8|CHX3_ARATH Cation/H(+) antiporter 3 OS=Arabidopsis thaliana GN=CHX3 PE=2 SV=1

 Score =  367 bits (942), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 243/735 (33%), Positives = 390/735 (53%), Gaps = 46/735 (6%)

Query: 2   GALMGPSLLREIPYLDGLFPMGS--RYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRA 59
           G L+  S L+E       F        V    A    ++  F++GV++D GL++   ++A
Sbjct: 91  GVLLSKSFLKENSAARRFFSTEDYKEIVFSLTAACSYMMFWFLMGVKMDTGLIRTTGRKA 150

Query: 60  VIIGITSTLLP-LVFGLSSFRIVQRISHLD-DETASSIAASVV--VNSMTSLVVITGLLK 115
           + IG++S LL  LV  +  F  ++ +   + D T +S+   V+  +  ++S  V+  LL 
Sbjct: 151 ITIGLSSVLLSTLVCSVIFFGNLRDVGTKNSDHTLNSLEYVVIYSIQCLSSFPVVGNLLF 210

Query: 116 ELKMLNSELGRLAASITIVSHIFGWSASMILLSV-------RDSQDNLTTI--------- 159
           EL++ NSELGRLA S  ++S      ++ IL SV       +D Q  L ++         
Sbjct: 211 ELRLQNSELGRLAISSAVISDF----STSILASVLIFMKELKDEQTRLGSVFIGDVIAGN 266

Query: 160 KPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVG 219
           +PL    +V+++  I I++ RPL   I+ +      +   +    I +V  + IL     
Sbjct: 267 RPLMRAGIVVLFVCIAIYVFRPLMFYIIKQTPSGRPVKAIYLSTIIVMVSGSAILANWCK 326

Query: 220 QNSILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMEL-YLINEKSFI 278
           Q+  +  F  GL +P GPPLG+ ++QK +    G  LP F A S   +++  L   +   
Sbjct: 327 QSIFMGPFILGLAVPHGPPLGSAIIQKYESAIFGTFLPFFIASSSTEIDISALFGWEGLN 386

Query: 279 KIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITN 338
            I  I++ S++ KF    VP+LF+GM       L+LIM  +GI E+  Y +   R  +  
Sbjct: 387 GIILIMVTSFVVKFIFTTVPALFYGMPMEDCFALSLIMSFKGIFELGAYALAYQRGSVRP 446

Query: 339 QIFAIMITNMVIITGISTTIVGYLYDPSRRYKLDVRRAICKSKQNS-LRILVCIHKEQNV 397
           + F +    + + + I   I+ YLYDPSR Y    +R +   K NS LRIL CI++  ++
Sbjct: 447 ETFTVACLYITLNSAIIPPILRYLYDPSRMYAGYEKRNMQHLKPNSELRILSCIYRTDDI 506

Query: 398 NPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTK--SEAASSTQLINAFT 455
           +P+I+LLE   P+R SP+A +VL LMEL G        H  QT+   E + S  ++ +F 
Sbjct: 507 SPMINLLEAICPSRESPVATYVLHLMELVGQANPIFISHKLQTRRTEETSYSNNVLVSFE 566

Query: 456 QFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGV-GGILESTDL 514
           +F++ +YG V V  +T ++   TMH D+C LAL+    +I++PFH+ W   G  L S + 
Sbjct: 567 KFRKDFYGSVFVSTYTALSMPDTMHGDICMLALNNTTSLILLPFHQTWSADGSALISNNN 626

Query: 515 SIRALNRNVLHKAPCSVGILVHRGQN-----KSNRPVYTGEL----LYHIVMLFIGGADD 565
            IR LN++VL  APCSVG+ V+R  +      S R    G +     Y+I M+F+GG DD
Sbjct: 627 MIRNLNKSVLDVAPCSVGVFVYRSSSGRKNISSGRKTINGTVPNLSSYNICMIFLGGKDD 686

Query: 566 REALAYSRRMAEHPNTSLTVVWFITTDQN-RPSTEMPDDHELDNQAFDEFKDSMVGNKII 624
           REA+  + RMA  P  ++T+V  ITTD+  R +T    D  LD++   + K + + + I 
Sbjct: 687 REAVTLATRMARDPRINITIVRLITTDEKARENTVW--DKMLDDELLRDVKSNTLVD-IF 743

Query: 625 FREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVN 684
           + E+ ++D   T+ ++++    FD+FIVG+ +      T GL EW E+ ELGI+GD L +
Sbjct: 744 YSEKAIEDAAETSSLLRSMVSDFDMFIVGRGNGRTSVFTEGLEEWSEFKELGIIGDLLTS 803

Query: 685 S--NDEFSVLVVQQQ 697
              N + SVLV+QQQ
Sbjct: 804 QDFNCQASVLVIQQQ 818

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYC1|CHX4_ARATH Cation/H(+) antiporter 4 OS=Arabidopsis thaliana GN=CHX4 PE=2 SV=1

 Score =  366 bits (939), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 231/690 (33%), Positives = 376/690 (54%), Gaps = 32/690 (4%)

Query: 37  ILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPL-VFGLSSFRIVQRISHLDDETASSI 95
           ++  F++GV++DL L++   ++AV IG++S LL + V  L  F I++ +     E   S 
Sbjct: 127 MMFWFLMGVKMDLSLIRSTGRKAVAIGLSSVLLSITVCALIFFLILRDVGTKKGEPVMSF 186

Query: 96  AASV---VVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDS 152
              +   ++  ++S  VI  LL EL++ NSELGRLA S  ++S       S +L+ +++ 
Sbjct: 187 FEIIFIYLIQCLSSFPVIGNLLFELRLQNSELGRLAMSSAVISDFSTSILSAVLVFLKEL 246

Query: 153 QDNLTTIKPLYITLV------------VIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNH 200
           +D+ + +  ++I  V            V+++    I++ RPL   I+ +      + + +
Sbjct: 247 KDDKSRLGSVFIGDVIVGNRPMKRAGTVVLFVCFAIYIFRPLMFFIIKRTPSGRPVKKFY 306

Query: 201 FIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFC 260
               I +V  + IL     Q+  +  F  GL +P GPPLG+ ++QK +    G  LP F 
Sbjct: 307 IYAIIILVFGSAILADWCKQSIFIGPFILGLAVPHGPPLGSAILQKFESVVFGTFLPFFV 366

Query: 261 AISGIRMELYLINEKSFIKIEFIILM---SYLGKFTGVMVPSLFFGMSFLKASCLALIMC 317
           A S   ++  ++  +S+I ++ I+++   S++ KF    +P+  +GM       L+LIM 
Sbjct: 367 ATSAEEIDTSIL--QSWIDLKSIVILVSVSFIVKFALTTLPAFLYGMPAKDCIALSLIMS 424

Query: 318 CRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSRRYKLDVRRAI 377
            +GI E   Y     R  I    F ++   +++ + +   ++  +YDPSR Y    +R +
Sbjct: 425 FKGIFEFGAYGYAYQRGTIRPVTFTVLSLYILLNSAVIPPLLKRIYDPSRMYAGYEKRNM 484

Query: 378 CKSKQNS-LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPH 436
              K NS LRIL CI+K  ++ P+I+LLE + P+R +P+A +VL LMEL G     L  H
Sbjct: 485 LHMKPNSELRILSCIYKTDDIRPMINLLEATCPSRENPVATYVLHLMELVGQANPVLISH 544

Query: 437 HQQT-KSEAAS--STQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVV 493
             QT KSE  S  S  ++ +F QF   ++G V V  +T ++    MH D+C LAL+    
Sbjct: 545 RLQTRKSENMSYNSENVVVSFEQFHNDFFGSVFVSTYTALSVPKMMHGDICMLALNNTTS 604

Query: 494 IIIVPFHKQWGV-GGILESTDLSIRALNRNVLHKAPCSVGILVHRGQN--KSNRPVYTGE 550
           +II+PFH+ W   G  + S  L IR LN++VL  +PCSVGI V+R  N  ++ +      
Sbjct: 605 LIILPFHQTWSADGSAIVSDSLMIRQLNKSVLDLSPCSVGIFVYRSSNGRRTIKETAANF 664

Query: 551 LLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQA 610
             Y + MLF+GG DDREAL+ ++RMA     ++TVV  I+++Q R +     D  LD + 
Sbjct: 665 SSYQVCMLFLGGKDDREALSLAKRMARDSRITITVVSLISSEQ-RANQATDWDRMLDLEL 723

Query: 611 FDEFKDS-MVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEW 669
             + K + + G  I+F EE+V D   T+Q++++ A  +DLFIVG+        T GL EW
Sbjct: 724 LRDVKSNVLAGADIVFSEEVVNDANQTSQLLKSIANEYDLFIVGREKGRKSVFTEGLEEW 783

Query: 670 IEYPELGILGDTLVNS--NDEFSVLVVQQQ 697
            E+ ELGI+GD L +   N + SVLV+QQQ
Sbjct: 784 SEFEELGIIGDLLTSQDLNCQASVLVIQQQ 813

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q58P71|CHX8_ARATH Cation/H(+) antiporter 8 OS=Arabidopsis thaliana GN=CHX8 PE=2 SV=1

 Score =  329 bits (843), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 218/690 (31%), Positives = 367/690 (53%), Gaps = 36/690 (5%)

Query: 31  FAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDE 90
              FG ++  F+ GV++D+  +     +A + G+ +   P+V G   F +  + +     
Sbjct: 133 LGSFGFLIFWFLKGVRMDVKRIFKAEAKARVTGVAAVTFPIVVGFLLFNL--KSAKNRPL 190

Query: 91  TASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVR 150
           T       +++ S+TS   I  LL++L M +S +GR+A S  +VS I G    ++LL   
Sbjct: 191 TFQEYDVMLLMESITSFSGIARLLRDLGMNHSSIGRVALSSALVSDIVG----LLLLIAN 246

Query: 151 DSQDNLTTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLV 210
            S+ + T    L I   + ++ +I   +VRP+  +I+ +  E   +   +    + +V +
Sbjct: 247 VSRSSATLADGLAILTEITLFLVIAFAVVRPIMFKIIKRKGEGRPIEDKYIHGVLVLVCL 306

Query: 211 TTILGTLVGQNSILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRME-- 268
           + +    + Q   L AFF GL +P+GPP+G+ LV++L+ F  G +LP+F     +R +  
Sbjct: 307 SCMYWEDLSQFPPLGAFFLGLAIPNGPPIGSALVERLESFNFGIILPLFLTAVMLRTDTT 366

Query: 269 -------LYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGI 321
                   +  ++K F     ++L+  L     V+VP L + M    +  LALIM  +GI
Sbjct: 367 AWKGALTFFSGDDKKFAVASLVLLIFLLKLSVSVIVPYL-YKMPLRDSIILALIMSHKGI 425

Query: 322 AEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSRRYKLDVRRAICKSK 381
            E++ Y      K++T   F+I++ ++V+ + +    +G+LYDPS+++    +R +   K
Sbjct: 426 IELSFYLFSLSLKLVTKDTFSILVLSIVLNSLLIPMAIGFLYDPSKQFICYQKRNLASMK 485

Query: 382 Q-NSLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQT 440
               L+ LVCIH+  +++ +I+LLE S  + +SP+  +VL L+EL+G     L  H  Q 
Sbjct: 486 NMGELKTLVCIHRPDHISSMINLLEASYQSEDSPLTCYVLHLVELRGQDVPTLISHKVQK 545

Query: 441 KSEAAS---STQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIV 497
               A    S  +I +F  F R     + +  FT IA    M DD+C LALDK V +II+
Sbjct: 546 LGVGAGNKYSENVILSFEHFHRSVCSSISIDTFTCIANANHMQDDICWLALDKAVTLIIL 605

Query: 498 PFHKQWGVGGILESTDL-SIRALNRNVLHKAPCSVGILVHRGQ-NKSNRPVYTGELLYHI 555
           PFH+ W +      +D+ +IR LN NVL +APCSVGIL+ R   NK   P  +      +
Sbjct: 606 PFHRTWSLDRTSIVSDVEAIRFLNVNVLKQAPCSVGILIERHLVNKKQEPHES----LKV 661

Query: 556 VMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFK 615
            ++F+GG DDREALA+++RMA   N +LTV+  + + +++ +T    D  LD     E  
Sbjct: 662 CVIFVGGKDDREALAFAKRMARQENVTLTVLRLLASGKSKDATGW--DQMLDTVELRELI 719

Query: 616 DS----MVGNK--IIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEW 669
            S    MV  +   I+ E+ + DG  T+ ++++ A  +DLF+VG+      +AT G+  W
Sbjct: 720 KSNNAGMVKEETSTIYLEQEILDGADTSMLLRSMAFDYDLFVVGRTCGENHEATKGIENW 779

Query: 670 IEYPELGILGDTLVNSN--DEFSVLVVQQQ 697
            E+ ELG++GD L + +   + SVLVVQQQ
Sbjct: 780 CEFEELGVIGDFLASPDFPSKTSVLVVQQQ 809

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q58P69|CHX10_ARATH Cation/H(+) antiporter 10 OS=Arabidopsis thaliana GN=CHX10 PE=2 SV=2

 Score =  325 bits (834), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 217/704 (30%), Positives = 362/704 (51%), Gaps = 35/704 (4%)

Query: 1   GGALMGPSLLREI----------PYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLG 50
            G ++GP L   +          P LDG+        LR  + FG ++  F++ V+    
Sbjct: 72  AGIVLGPQLFDVLEKSSGKLSVDPALDGI------AALRCISVFGTLMFTFLMTVRTSRR 125

Query: 51  LVKHIRKRAVIIGITSTLLPLV-FGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVV 109
           +  H  K  V+IGI S   PL   G  +F       H    T +    + +V + +S+++
Sbjct: 126 VAFHSGKLPVVIGIVSFFAPLFGLGFQNFFSDNIDPHYMPLTKALGERTAIVITQSSILL 185

Query: 110 --ITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLV 167
              T +L ELK++NSELGRLA S  +++ I G   SMI+ S++ +  +++       T+ 
Sbjct: 186 PSTTYILLELKIINSELGRLALSACVINDILGI-FSMIVASIQATYIHVSHATAYRDTVA 244

Query: 168 VIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAF 227
           VI+++++V  + +P+   ++ +  E++ +   +    I   L +           IL   
Sbjct: 245 VIIFFLVVFLVFKPMVQWVIDRTPEDKPVEDMYIHAVIITALASAAYFVFFNMKYILGPL 304

Query: 228 FFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMS 287
             G+ +P+GPPLG+ L  K +  T    LP+    S +R +   I  + F  I F I ++
Sbjct: 305 MIGIIIPEGPPLGSALEAKFERLTMNVFLPISITFSAMRCDGARILSQ-FNDIFFNIFLT 363

Query: 288 YLG---KFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIM 344
           +L    K    + P L++ +   ++  ++ I+  +  A+  +Y    D   I+   ++ +
Sbjct: 364 FLILVIKLVACLAPCLYYKLPLSESLAVSFILSYKSFADFVLYEAVLDDTYISQATYSFL 423

Query: 345 ITNMVIITGISTTIVGYLYDPSRRYKLDVRRAICKSKQNS-LRILVCIHKEQNVNPLISL 403
           I   ++  GI  T++  +YDP R+Y    +R I   ++NS LRIL C+HK +NV+  I+ 
Sbjct: 424 ILYSLLNAGIVPTVLRRMYDPRRKYVNYQKRDILHLERNSDLRILTCLHKPENVSETIAF 483

Query: 404 LEV-SNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKS-EAASSTQLIN-AFTQFQRC 460
           L++ S+P  + PIA  VL L++L G +   +  H ++ K     S     N AF QF   
Sbjct: 484 LQLLSSPNLDFPIAVTVLHLVKLVGQINPIIVSHDKKLKRLNKDSYIHTANLAFRQFVLE 543

Query: 461 YYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALN 520
               V V  FT  +    MH+D+CTLALDK   +I+VP  ++W V G+ ES + +IR LN
Sbjct: 544 SLESVTVTTFTAFSHENLMHEDICTLALDKTTSMIVVPSGRKWTVDGLFESDNTAIRHLN 603

Query: 521 RNVLHKAPCSVGILVHRGQNKSNRPVYTGELLY--HIVMLFIGGADDREALAYSRRMAEH 578
           +++L +APCS+GILV RGQ  S + + T +  Y   + +LFIGG DDREAL+  +RM  +
Sbjct: 604 QSLLDRAPCSIGILVDRGQF-SRKSIVTSKKRYIIDVGVLFIGGKDDREALSLVKRMKNN 662

Query: 579 PNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQ 638
           P   +TV+  +   +     E   D+ LDN+   + K +     I + E IV   +   +
Sbjct: 663 PRIRVTVIRLVFDHE----IESDWDYILDNEGLKDLKSTEDNKDIDYIERIVTSSVEVVK 718

Query: 639 VIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTL 682
            +Q  AE +DL +VG++HD   +   GL EW+E PELG++GD L
Sbjct: 719 AVQLLAEEYDLMVVGRDHDMTSQDLSGLMEWVELPELGVIGDLL 762

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYD4|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana GN=CHX23 PE=1 SV=1

 Score =  320 bits (820), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 214/723 (29%), Positives = 366/723 (50%), Gaps = 25/723 (3%)

Query: 2   GALMGPSLLREIPYLDG-LFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAV 60
           G L  PS+L    ++   +FP     VL TFA   ++ + F+LG+ +DL +V+    + V
Sbjct: 87  GLLFSPSVLGNTRFIIAHVFPYRFTMVLETFANLALVYNIFLLGLGMDLRMVRITELKPV 146

Query: 61  IIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKML 120
           II  T  L+ L  G   + +     H D   +  +  SV + + T+   +  +L +LK+L
Sbjct: 147 IIAFTGLLVALPVGAFLYYLPGN-GHPDKIISGCVFWSVAL-ACTNFPDLARILADLKLL 204

Query: 121 NSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLVR 180
            S++GR A    IV+ +  W   +   +          + P ++ +   ++ ++ IF++R
Sbjct: 205 RSDMGRTAMCAAIVTDLCTWVLLVFGFASFSKSGTWNKMMP-FVIITTAIFVLLCIFVIR 263

Query: 181 PLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLG 240
           P    I +K  +   +   H    +  V++  ++    G +SI  AF FGL +P    + 
Sbjct: 264 PGIAWIFAKTVKAGHVGDTHVWFILGGVVLCGLITDACGVHSITGAFLFGLSIPHDHIIR 323

Query: 241 TQLVQKLDFFTSGFLLPVFCAISGIRMEL-YLINEKSFIKIEFIILMSYLGKFTGVMVPS 299
             + +KL  F SG L+P+F  I G+R ++ +++       +  +I  S+L K    ++ S
Sbjct: 324 NMIEEKLHDFLSGILMPLFYIICGLRADIGFMLQFTDKFMMVVVICSSFLVKIVTTVITS 383

Query: 300 LFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIV 359
           LF  +    A  +  +M  +G   + V    +D K + + ++  M   +++++ +   ++
Sbjct: 384 LFMHIPMRDAFAIGALMNTKGTLSLVVLNAGRDTKALDSPMYTHMTIALLVMSLVVEPLL 443

Query: 360 GYLYDPSRRYKLDVRRAICKSK-QNSLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAF 418
            + Y P ++      R + K K +  LR+L C+H   NV+ + +LL+VSN T+ SP++ F
Sbjct: 444 AFAYKPKKKLAHYKHRTVQKIKGETELRVLACVHVLPNVSGITNLLQVSNATKQSPLSVF 503

Query: 419 VLQLMELKGSVTAFLKPHHQQTKSEA-------ASSTQLINAFTQFQRCYYGHVVVQHFT 471
            + L+EL G  TA L   + + K +A       A S Q+   F   +      + VQ  T
Sbjct: 504 AIHLVELTGRTTASLLIMNDECKPKANFSDRVRAESDQIAETFEAME-VNNDAMTVQTIT 562

Query: 472 TIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSV 531
            ++PYATMH+D+C LA DKRV  II+P+HK     G +   + S   +N+NVL  APCSV
Sbjct: 563 AVSPYATMHEDICVLAEDKRVCFIILPYHKHLTPDGRMGEGNSSHAEINQNVLSHAPCSV 622

Query: 532 GILVHRGQNKSNRPVYTGE-LLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFIT 590
           GILV RG        + GE +   + MLF+GG DDREAL+Y+ RM       LTVV F+ 
Sbjct: 623 GILVDRGMAMVRSESFRGESMKREVAMLFVGGPDDREALSYAWRMVGQHVIKLTVVRFVP 682

Query: 591 TDQ-----NRPSTEMPDDHELDNQAFDEFK-DSMVGNKIIFREEIVKDGIGTTQVIQAFA 644
             +      + + E   + ++D++   EF   +M  + + + E++V DG  T   I+   
Sbjct: 683 GREALISSGKVAAEYEREKQVDDECIYEFNFKTMNDSSVKYIEKVVNDGQDTIATIREME 742

Query: 645 E--TFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEF--SVLVVQQQPKE 700
           +  ++DL++VG+ ++     T GL++W   PELG +GDTL +SN     SVLV+QQ    
Sbjct: 743 DNNSYDLYVVGRGYNSDSPVTAGLNDWSSSPELGTIGDTLASSNFTMHASVLVIQQYSAT 802

Query: 701 SRH 703
            R 
Sbjct: 803 KRQ 805

Operates as a K(+)/H(+) antiporter or Na(+)/H(+) antiporter of the chloroplast envelope that functions in pH homeostasis and chloroplast development. Monovalent cation transporter with a preference for Cs(+), K(+) and Rb(+) relative to Na(+) or Li(+). Required for pollen tube guidance, but not for normal pollen development. May also be involved in the development or function of the female gametophyte.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFR9|CHX18_ARATH Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1

 Score =  314 bits (804), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 233/729 (31%), Positives = 377/729 (51%), Gaps = 43/729 (5%)

Query: 1   GGALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRA 59
           GG ++GPSLL R   +LD +FP  S  VL T A  G++   F+ G++ID   ++   K+A
Sbjct: 66  GGIMLGPSLLGRSKAFLDAVFPKKSLTVLETLANLGLLFFLFLAGLEIDTKALRRTGKKA 125

Query: 60  VIIGITSTLLPLVFGL-SSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELK 118
           + I +    LP   G+ SSF +   IS   + TA  +   V + S+T+  V+  +L ELK
Sbjct: 126 LGIALAGITLPFALGIGSSFVLKATISKGVNSTAFLVFMGVAL-SITAFPVLARILAELK 184

Query: 119 MLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFL 178
           +L +E+GRLA S   V+ +  W   ++ L++  S  N + +  L++ L    + I   F+
Sbjct: 185 LLTTEIGRLAMSAAAVNDVAAWI--LLALAIALSGSNTSPLVSLWVFLSGCAFVIGASFI 242

Query: 179 VRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPP 238
           + P+   I  +  E E + + +   T+ +VLV   +   +G +S+  AF  G+ +P   P
Sbjct: 243 IPPIFRWISRRCHEGEPIEETYICATLAVVLVCGFITDAIGIHSMFGAFVVGVLIPKEGP 302

Query: 239 LGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLI-NEKSFIKIEFIILMSYLGKFTGVMV 297
               LV+K++   SG  LP++   SG++  +  I   +S+  +  +   +  GK  G + 
Sbjct: 303 FAGALVEKVEDLVSGLFLPLYFVASGLKTNVATIQGAQSWGLLVLVTATACFGKILGTLG 362

Query: 298 PSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTT 357
            SL F +   +A  L  +M  +G+ E+ V  + KDRK++ +Q FAIM+   +  T I+T 
Sbjct: 363 VSLAFKIPMREAITLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMALFTTFITTP 422

Query: 358 IVGYLYDPSRRYKLD---VRRAICKSKQNS-LRILVCIHKEQNVNPLISLLEVSNP-TRN 412
           +V  +Y P+RR K +     RA+ +   N+ LRIL C H   ++  +I+LLE S    + 
Sbjct: 423 VVMAVYKPARRAKKEGEYKHRAVERENTNTQLRILTCFHGAGSIPSMINLLEASRGIEKG 482

Query: 413 SPIAAFVLQLMELKGSVTAFLKPHHQQT--------KSEAASSTQLINAFTQFQRCYYGH 464
             +  + L L EL    +A L  H  +         +   A + Q++ AF  FQ+     
Sbjct: 483 EGLCVYALHLRELSERSSAILMVHKVRKNGMPFWNRRGVNADADQVVVAFQAFQQ--LSR 540

Query: 465 VVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVL 524
           V V+  T I+  + +H+D+CT A+ K+  I+I+PFHK   + G LE+T    R +NR VL
Sbjct: 541 VNVRPMTAISSMSDIHEDICTTAVRKKAAIVILPFHKHQQLDGSLETTRGDYRWVNRRVL 600

Query: 525 HKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLT 584
            +APCSVGI V RG   S++ V   ++ Y +V+LF GG DDREALAY  RMAEHP   LT
Sbjct: 601 LQAPCSVGIFVDRGLGGSSQ-VSAQDVSYSVVVLFFGGPDDREALAYGLRMAEHPGIVLT 659

Query: 585 VVWFITTDQN------------RPSTEMPDDHELDNQAFDEFKD-SMVGNKIIFREEIVK 631
           V  F+ + +                 +   + + D +   E +  S V   + F E+ ++
Sbjct: 660 VFRFVVSPERVGEIVNVEVSNNNNENQSVKNLKSDEEIMSEIRKISSVDESVKFVEKQIE 719

Query: 632 DGIGTTQVIQAFAET--FDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVN--SND 687
           +      V  A  E    +LF+VG+   P  +  L + E  E PELG +G  L++  S+ 
Sbjct: 720 N--AAVDVRSAIEEVRRSNLFLVGRM--PGGEIALAIRENSECPELGPVGSLLISPESST 775

Query: 688 EFSVLVVQQ 696
           + SVLV+QQ
Sbjct: 776 KASVLVIQQ 784

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFB7|CHX9_ARATH Cation/H(+) antiporter 9 OS=Arabidopsis thaliana GN=CHX9 PE=2 SV=1

 Score =  313 bits (801), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 217/715 (30%), Positives = 374/715 (52%), Gaps = 44/715 (6%)

Query: 1   GGALMGPSLLREIPYLDGLFPMG--SRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKR 58
            G ++GP LL  + Y      +       L   A  G+++  F++GV+ +   V  I KR
Sbjct: 84  AGLILGPQLLDLLEYSSDRLSLDIPGNVALEGVARLGLVMFTFLMGVKTNKRAVYQIGKR 143

Query: 59  AVIIGITSTLLPLVFGLSSFRIVQRISHLDD--------ETASSIAASVVVNSMTSLVVI 110
            ++I ++S  + ++ GL+ FR   R+  +D          T  S+  S+   ++T L VI
Sbjct: 144 PIVIAVSSFFVTMISGLA-FRNF-RLDKVDPLYMPLRLAPTERSVIVSI--QAVTLLPVI 199

Query: 111 TGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIV 170
           T L+ ELKM NSELGR+A S   VS   G+  +++ +S   +   ++        + +I+
Sbjct: 200 THLVYELKMSNSELGRIAISTAAVSDFLGF-LTLVCISYVGTYRYVSPGIANRDIVALII 258

Query: 171 YYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFG 230
             ++++F+ +P+  RIV    E + + + +  +TI   +  +I  ++  Q  IL A   G
Sbjct: 259 LVLVILFIFKPMAQRIVDMTPEGKPVPKVYLYVTILTAIAASIYLSVFNQMYILGALLVG 318

Query: 231 LCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRME----LYLINEKSFIKIEFIILM 286
           L +PDGPPLG+ L  + +   +    P+  A+  ++ +    LY     SF  I F IL+
Sbjct: 319 LAIPDGPPLGSALEARFESLVTNIFFPISIAVMAMKADVVRALY-----SFDDISFNILL 373

Query: 287 ---SYLGKFTGVMVPSLFF-GMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFA 342
              + + K+T   VP L F  +   ++  +A IM  +G  ++  + +   R+ ++   + 
Sbjct: 374 LGLTVVVKWTASFVPCLIFCELPTRESVIIATIMNYKGFVDLCFFDVALRRRNLSRATYT 433

Query: 343 IMITNMVIITGISTTIVGYLYDPSRRYKLDVRRAICKSKQNS-LRILVCIHKEQNVNPLI 401
           +MI  +++  GI  TI+  LYDP R+Y   V+R I   K NS L+IL C+HK  N++  I
Sbjct: 434 VMIIYVLLNAGILPTIIKALYDPKRKYIGYVKRDIMHLKTNSDLKILTCLHKPDNISGAI 493

Query: 402 SLLEVSNPTRNSP------IAAFVLQLMELKGSVTAFLKPHHQQTKSEAASST---QLIN 452
           SLLE+ +   N+       IA   L L++L G     L PH +++K+    ++    ++ 
Sbjct: 494 SLLELLSSPLNNDNKDRGVIAVTALHLVKLAGRTFPILIPHDKRSKARLLQNSYIQTMML 553

Query: 453 AFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILEST 512
           AFT+FQ+  +    V  FT  +    M  D+C LALD    +IIVP  ++W   G  ES 
Sbjct: 554 AFTEFQQENWESTTVSSFTAYSHENLMDQDICNLALDHLTSMIIVPSGRKWSPDGEYESD 613

Query: 513 DLSIRALNRNVLHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYS 572
           D+ IR +N ++L  APCSVGIL +RG NK  +   +   + ++ ++FIGG DDREAL+ +
Sbjct: 614 DIMIRRVNESLLDLAPCSVGILNYRGYNKGKKKTNS---IINVGVIFIGGKDDREALSLA 670

Query: 573 RRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSM-VGNKIIFREEIVK 631
           + M ++    LTV+ F++  +   S     D+ +D++  ++ K +  + N   + E++V 
Sbjct: 671 KWMGQNSRVCLTVIRFLSGQELDKSKNW--DYLVDDEVLNDLKATYSLANNFNYMEKVVN 728

Query: 632 DGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSN 686
            G      ++  AE  DL IVG++H+       GL++W+E PELG++GD L + +
Sbjct: 729 GGPAVATTVRLVAEDHDLMIVGRDHEDYSLDLTGLAQWMELPELGVIGDLLASKD 783

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	709
297745811	1497	unnamed protein product [Vitis vinifera]	0.966	0.457	0.448	1e-166
225434427	790	PREDICTED: cation/H(+) antiporter 14-lik	0.964	0.865	0.449	1e-166
255545273	819	monovalent cation:proton antiporter, put	0.971	0.841	0.419	1e-155
356537620	779	PREDICTED: cation/H(+) antiporter 14-lik	0.984	0.896	0.410	1e-153
357458003	788	Cation/H+ exchanger [Medicago truncatula	0.971	0.874	0.412	1e-151
356569482	1581	PREDICTED: uncharacterized protein LOC10	0.970	0.435	0.407	1e-149
297843492	829	ATCHX14 [Arabidopsis lyrata subsp. lyrat	0.973	0.832	0.371	1e-141
15222247	829	cation/H(+) antiporter 14 [Arabidopsis t	0.973	0.832	0.367	1e-139
297826419	830	ATCHX13 [Arabidopsis lyrata subsp. lyrat	0.968	0.827	0.364	1e-137
15227727	831	cation/H(+) symporter 13 [Arabidopsis th	0.963	0.821	0.365	1e-135

>gi|297745811|emb|CBI15867.3| unnamed protein product [Vitis vinifera]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 319/711 (44%), Positives = 455/711 (63%), Gaps = 26/711 (3%)

Query: 1   GGALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRA 59
            G +MGPS+L  +  Y + LFP G + VL T A  G +LH F++G+Q+D  ++K   K A
Sbjct: 73  AGIIMGPSILGHDGAYAEKLFPPGGKLVLETLANVGFMLHLFLVGLQMDPRILKKAGKTA 132

Query: 60  VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKM 119
           V+IGI   +LP   G  +F I+  +  LD + + SI   V +NSMTS VV++ LL +L +
Sbjct: 133 VLIGIGGFILPYGLGELAFIIIHHVMTLDRKLSVSIPFMVALNSMTSFVVVSSLLTDLNI 192

Query: 120 LNSELGRLAASITIVSHIFGWSASMIL----LSVRDSQDNLTTIKPLYITLVVIVYYIIV 175
           LNSELGRLA   ++VS +  W  + ++    ++ RDS D +         + ++++ I +
Sbjct: 193 LNSELGRLATQTSMVSDLCSWFMATMMNTVGIAARDS-DWMLLWS----LIWLLIFLISI 247

Query: 176 IFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPD 235
           +F+ RP+ + I  +  E E M++  F I I +++       ++GQ++ L     G+ LPD
Sbjct: 248 VFVFRPIIIWISKQTPEGERMDEVLFFIIIVMIMGCAFCAEVLGQHAALGPLVLGMALPD 307

Query: 236 GPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSF-IKIEFIILMSYLGKFTG 294
           GPP+GT L+QK D   +G LLP+F A+SG + +L+ + +  F   +EFII++ Y+GKFTG
Sbjct: 308 GPPIGTILLQKFDTMVTGLLLPIFFALSGSKTKLFSLGKGMFPFMVEFIIILGYIGKFTG 367

Query: 295 VMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGI 354
            ++P++F G+    + CLA+IMCC+GI E+A Y MWKDRKI++ Q +++++  M+I+TG+
Sbjct: 368 TLIPAIFSGVPRWDSLCLAMIMCCKGIIEVATYSMWKDRKILSYQSYSLLLITMLIVTGV 427

Query: 355 STTIVGYLYDPSRRYKLDVRRAICKSKQNS-LRILVCIHKEQNVNPLISLLEVSNPTRNS 413
              IVGYLYDP+  +    R++I   K +S  RILVCIH E NV+ +I+LLE S+ T++S
Sbjct: 428 CRPIVGYLYDPASSHMSYSRKSIMYPKHDSEFRILVCIHNEHNVSTIINLLEASHATKSS 487

Query: 414 PIAAFVLQLMELKGSVTAFLKPHHQQTK--SEAASSTQLINAFTQFQRCYYGHVVVQHFT 471
           PI+   L LMEL GS ++ L+ +  + K  S       +INAF  +++  +G V VQHFT
Sbjct: 488 PISIVALCLMELTGSSSSVLESYDSKKKLTSGVTHLGHIINAFNYYEQHNHGRVTVQHFT 547

Query: 472 TIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSV 531
            IAPY++MH D+C +AL+ R  I+IVPFHKQ   GG  E+T  SI+ +N NV+ KAPCSV
Sbjct: 548 AIAPYSSMHTDICAIALEMRANIVIVPFHKQMAFGGTEEATATSIKTVNLNVIDKAPCSV 607

Query: 532 GILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITT 591
           GILV RG    +R    G  LYHI +LF+GGADDREAL+YSRRMAE P   LTVV F   
Sbjct: 608 GILVDRGHIGGHRSFVAGHSLYHIALLFLGGADDREALSYSRRMAEDPKIRLTVVCF--- 664

Query: 592 DQNRPSTEMPDDHE----LDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETF 647
              RP  E     E    LD +  +EFK   V +KI++ E IVKDG GTTQVI++  E F
Sbjct: 665 ---RPWGEQAYTEETEEYLDKKLMNEFKADAV-DKIVYSEVIVKDGEGTTQVIRSMEEGF 720

Query: 648 DLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQP 698
           DLFIVG++HD     TLGL+EW E  ELG++GD L  S+  FSVLVVQQQP
Sbjct: 721 DLFIVGRHHDK-SPFTLGLTEWHECTELGLIGDMLAGSDFLFSVLVVQQQP 770

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434427|ref|XP_002277552.1| PREDICTED: cation/H(+) antiporter 14-like [Vitis vinifera]

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 319/710 (44%), Positives = 455/710 (64%), Gaps = 26/710 (3%)

Query: 2   GALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAV 60
           G +MGPS+L  +  Y + LFP G + VL T A  G +LH F++G+Q+D  ++K   K AV
Sbjct: 80  GIIMGPSILGHDGAYAEKLFPPGGKLVLETLANVGFMLHLFLVGLQMDPRILKKAGKTAV 139

Query: 61  IIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKML 120
           +IGI   +LP   G  +F I+  +  LD + + SI   V +NSMTS VV++ LL +L +L
Sbjct: 140 LIGIGGFILPYGLGELAFIIIHHVMTLDRKLSVSIPFMVALNSMTSFVVVSSLLTDLNIL 199

Query: 121 NSELGRLAASITIVSHIFGWSASMIL----LSVRDSQDNLTTIKPLYITLVVIVYYIIVI 176
           NSELGRLA   ++VS +  W  + ++    ++ RDS D +         + ++++ I ++
Sbjct: 200 NSELGRLATQTSMVSDLCSWFMATMMNTVGIAARDS-DWMLLWS----LIWLLIFLISIV 254

Query: 177 FLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDG 236
           F+ RP+ + I  +  E E M++  F I I +++       ++GQ++ L     G+ LPDG
Sbjct: 255 FVFRPIIIWISKQTPEGERMDEVLFFIIIVMIMGCAFCAEVLGQHAALGPLVLGMALPDG 314

Query: 237 PPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSF-IKIEFIILMSYLGKFTGV 295
           PP+GT L+QK D   +G LLP+F A+SG + +L+ + +  F   +EFII++ Y+GKFTG 
Sbjct: 315 PPIGTILLQKFDTMVTGLLLPIFFALSGSKTKLFSLGKGMFPFMVEFIIILGYIGKFTGT 374

Query: 296 MVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGIS 355
           ++P++F G+    + CLA+IMCC+GI E+A Y MWKDRKI++ Q +++++  M+I+TG+ 
Sbjct: 375 LIPAIFSGVPRWDSLCLAMIMCCKGIIEVATYSMWKDRKILSYQSYSLLLITMLIVTGVC 434

Query: 356 TTIVGYLYDPSRRYKLDVRRAICKSKQNS-LRILVCIHKEQNVNPLISLLEVSNPTRNSP 414
             IVGYLYDP+  +    R++I   K +S  RILVCIH E NV+ +I+LLE S+ T++SP
Sbjct: 435 RPIVGYLYDPASSHMSYSRKSIMYPKHDSEFRILVCIHNEHNVSTIINLLEASHATKSSP 494

Query: 415 IAAFVLQLMELKGSVTAFLKPHHQQTK--SEAASSTQLINAFTQFQRCYYGHVVVQHFTT 472
           I+   L LMEL GS ++ L+ +  + K  S       +INAF  +++  +G V VQHFT 
Sbjct: 495 ISIVALCLMELTGSSSSVLESYDSKKKLTSGVTHLGHIINAFNYYEQHNHGRVTVQHFTA 554

Query: 473 IAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVG 532
           IAPY++MH D+C +AL+ R  I+IVPFHKQ   GG  E+T  SI+ +N NV+ KAPCSVG
Sbjct: 555 IAPYSSMHTDICAIALEMRANIVIVPFHKQMAFGGTEEATATSIKTVNLNVIDKAPCSVG 614

Query: 533 ILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTD 592
           ILV RG    +R    G  LYHI +LF+GGADDREAL+YSRRMAE P   LTVV F    
Sbjct: 615 ILVDRGHIGGHRSFVAGHSLYHIALLFLGGADDREALSYSRRMAEDPKIRLTVVCF---- 670

Query: 593 QNRPSTEMPDDHE----LDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFD 648
             RP  E     E    LD +  +EFK   V +KI++ E IVKDG GTTQVI++  E FD
Sbjct: 671 --RPWGEQAYTEETEEYLDKKLMNEFKADAV-DKIVYSEVIVKDGEGTTQVIRSMEEGFD 727

Query: 649 LFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQP 698
           LFIVG++HD     TLGL+EW E  ELG++GD L  S+  FSVLVVQQQP
Sbjct: 728 LFIVGRHHDK-SPFTLGLTEWHECTELGLIGDMLAGSDFLFSVLVVQQQP 776

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545273|ref|XP_002513697.1| monovalent cation:proton antiporter, putative [Ricinus communis] gi|223547148|gb|EEF48644.1| monovalent cation:proton antiporter, putative [Ricinus communis]

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 295/704 (41%), Positives = 426/704 (60%), Gaps = 15/704 (2%)

Query: 2   GALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAV 60
           G L+GPS L    P +  LFP G R +L   A+ G ILH F L +QID  +++  R    
Sbjct: 84  GILLGPSFLWYYFPAMKNLFPSGGRVILNVAADLGAILHLFTLALQIDTSIIRQARATEA 143

Query: 61  IIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKML 120
           ++ +T  L PL  G  +F  +     LDD    +I   +VVN ++S  VITGLL +LK+L
Sbjct: 144 LLAVTGVLFPLTIGWIAFNSLIHARMLDDTIVQAIPPVLVVNCLSSFPVITGLLSDLKIL 203

Query: 121 NSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLVR 180
           NSELGR A+ I++++ +  +  S ++ +VR +  + +    +   +   +  +++++++R
Sbjct: 204 NSELGRFASKISMINDMSCFFISQVI-AVRQAYVHESADMAMKYIVCFTILLVLIVYIIR 262

Query: 181 PLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLG 240
           P  +R+ S     + M   HF + I  VL+ +    L+GQ+     F  G  LPDGPPLG
Sbjct: 263 PFLLRMTSYAKHGQPMEDTHFFLIIISVLICSFGSELLGQHYFFGPFVLGAVLPDGPPLG 322

Query: 241 TQLVQKLDFFTSGFLLPVFCAISGIRMELYLI---NEKSFIKIEFIILMSYLGKFTGVMV 297
           T++  KL  F  G LLPVF AI G+ M++  I   N  S +K+ F +  +Y+ KFTGV++
Sbjct: 323 TEIEHKLHIFCRGLLLPVFVAIGGLNMDVLAIRDGNTHSAVKVIFAV--TYIAKFTGVVL 380

Query: 298 PSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTT 357
           P++  G+ FL A CLALI+C +GI E+A+Y +W D K++    F I++T+++I++  S  
Sbjct: 381 PAICCGVQFLDALCLALILCSKGIIEVAIYGIWLDAKVLDAPSFNILLTSLLIVSCFSRP 440

Query: 358 IVGYLYDPSRRYKLDVRRAICKSK-QNSLRILVCIHKEQNVNPLISLLEVSNPTRNSPIA 416
           I+ YLYDPS+RYK   RR I  S  Q  LRIL+CIH   +V  ++SLL+  NPTR+S I 
Sbjct: 441 IIFYLYDPSKRYKTSNRRTIRGSNYQTQLRILICIHNPDDVPTILSLLKAFNPTRDSLIT 500

Query: 417 AFVLQLMELKGSVTAFLKPHHQ--QTKSEAASSTQLINAFTQFQRCYYGHVVVQHFTTIA 474
            FVLQLM+L G   A L PH++    KS    S  + NAF + ++   G ++VQHFT +A
Sbjct: 501 VFVLQLMQLTGRAAAILVPHNEINTLKSTRNCSLHIFNAFERLEQHCKGSILVQHFTAVA 560

Query: 475 PYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL 534
           PY +MH D+CT+ALDKR  I+I+P+HK+W   G + STD SIRA+N  V+  APCSVG+L
Sbjct: 561 PYKSMHTDICTIALDKRTTIVIIPYHKRWSFDGTIASTDSSIRAVNHTVMEMAPCSVGLL 620

Query: 535 VHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQN 594
           + RGQ   NR V +   +Y I M F GG DD EALA S R+A HPN S TVV F     N
Sbjct: 621 IDRGQIGGNRFVSSEYSMYRIAMFFFGGDDDGEALAISERIASHPNVSFTVVLFKHDLYN 680

Query: 595 RPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGK 654
               E   D+ ++N   ++ KD     K+  +E IVK+G  T + I +  + FDL IVG+
Sbjct: 681 NEEKERTIDYWIENLPSEDCKD-----KLQVKEVIVKNGEETIKEICSLGDAFDLAIVGR 735

Query: 655 NHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQP 698
           + DP    T+GL+EW E PELG +GD L +++  FSVLVV QQP
Sbjct: 736 HQDPHSPCTMGLTEWSEGPELGAIGDMLSSTDFGFSVLVVAQQP 779

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537620|ref|XP_003537324.1| PREDICTED: cation/H(+) antiporter 14-like [Glycine max]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 292/712 (41%), Positives = 440/712 (61%), Gaps = 14/712 (1%)

Query: 1   GGALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRA 59
            G ++GP  L +     + +FP  S+  L TFAEFGMI+H F +GVQI+  L+  I K+A
Sbjct: 79  AGIILGPLFLGQHNSSYEMIFPTASKMTLTTFAEFGMIIHFFQIGVQINPMLILKIEKQA 138

Query: 60  VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKM 119
           + IG+   +  +  G   F IV+ + + +    + I   V+ +S+++  VI+G L E+ +
Sbjct: 139 IAIGLIGNISSIALGGIIFNIVKGM-YPEGMENTGIHVLVISSSVSTFPVISGFLAEMNI 197

Query: 120 LNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLV 179
           LNSE+GR+A SI+++S +  W    ++++   + +   T KP+    V I Y+ I+ F +
Sbjct: 198 LNSEIGRMAISISMISDLCMWVMYFVVINSAKAVEQ-QTYKPITEIAVTICYFSILFFFL 256

Query: 180 RPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL 239
           RPL + I ++N + + M ++HF+  ICI+L      +++GQ   L AF FGL LPDGPPL
Sbjct: 257 RPLVIWISNRNPQGKPMTESHFLSIICILLFVGFSASMLGQPPFLVAFCFGLILPDGPPL 316

Query: 240 GTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPS 299
           G+ L ++LD   S F++P +C I+G+R ++  + E   + IE I++ +Y+GKF G ++PS
Sbjct: 317 GSVLAERLDTVGSTFMVPSYCTITGLRTDVPSLVESKTVTIEVILISTYVGKFMGTILPS 376

Query: 300 LFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIV 359
           L F + F  +  LALIMCC+G+ ++ V  M  + K I    F + I  MV ITG+++ +V
Sbjct: 377 LHFHIEFWDSFALALIMCCKGLVDLCVLNMLLNVKAIEELPFTLAIFTMVAITGLASIVV 436

Query: 360 GYLYDPSRRYKLDVRRAICKSKQN-SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAF 418
            Y+YDPSRRYK  +R+ I   +    ++ILVC+H E+NV P+I+LL+ SNPT  +PI+ F
Sbjct: 437 HYIYDPSRRYKAYIRKTIKDGQHEPDIKILVCVHNEENVYPMINLLQASNPTNVTPISIF 496

Query: 419 VLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHVVVQHFTTIAPYAT 478
           VL L+EL G   + L     + KS   SS  + NAF QFQ    G V++Q+F  I PY +
Sbjct: 497 VLHLIELSGRAISTLT----KNKSTNKSSQHIKNAFDQFQMHNRGCVMLQYFNAITPYLS 552

Query: 479 MHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRG 538
           MHDD+C +A+D +  I+I+PFHKQW + G +E ++ SIR LN+NVL KAPCSVGI + R 
Sbjct: 553 MHDDICYMAMDSKSNIVIMPFHKQWSINGNVEYSNASIRILNQNVLRKAPCSVGIFIDRS 612

Query: 539 QNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ-NRPS 597
           Q      V   +    I M+F+GG DD+EALAYS R+A+HPN  LTV W     Q N+  
Sbjct: 613 QMNGKLLVIYEKSFCEIAMVFLGGGDDQEALAYSLRIAQHPNVRLTVFWITFKIQGNKRK 672

Query: 598 TEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHD 657
           T+ P    +++  +  + +     K+ F+EEIV+DG GTTQVI++    + L +VG+++ 
Sbjct: 673 TKNPYIDLMEHIRYSSYHEG----KVTFKEEIVEDGEGTTQVIRSIEGQYKLVVVGRHYI 728

Query: 658 PCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQPKESRHELKSIQ 709
                TLGL+EW E PELG LG+ L  S+  FSVLVVQQQP    HE + I+
Sbjct: 729 KDSPCTLGLTEWCELPELGPLGNLLATSDFTFSVLVVQQQPP-FNHEYRYIR 779

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458003|ref|XP_003599282.1| Cation/H+ exchanger [Medicago truncatula] gi|355488330|gb|AES69533.1| Cation/H+ exchanger [Medicago truncatula]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 292/708 (41%), Positives = 440/708 (62%), Gaps = 19/708 (2%)

Query: 1   GGALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRA 59
            G ++GP  L R+    + LFP  S  +L TFAEFGMI++ F +GVQI+   +  + KRA
Sbjct: 81  AGIIVGPLFLGRDNTSFEMLFPTASIMILSTFAEFGMIIYFFKMGVQINSKQIFMVEKRA 140

Query: 60  VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKM 119
           VIIGI+  L  +V G+ + R+V+R + L  E  S +  ++   S+TS  VI+  L E+ +
Sbjct: 141 VIIGISGHLSSMVLGIIALRLVERFTPLGSEKLSMVNLAIF-GSLTSFSVISSFLSEMNI 199

Query: 120 LNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLV 179
           LNSE+GR+A S +IVS    W    I+++   + +   + K L    + I Y+ ++ FL+
Sbjct: 200 LNSEIGRMALSTSIVSDACMWVVYFIVINGTLALER-KSYKFLLEMSMTIGYFAVLYFLL 258

Query: 180 RPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL 239
           RPL + I ++N + +SM ++HF++ I I+L+  +   + GQ+S + AF+FGL LPDGPPL
Sbjct: 259 RPLVIWISNRNPKGKSMTESHFLMIIGILLIVGLSAQIAGQSSFIIAFWFGLFLPDGPPL 318

Query: 240 GTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPS 299
           G+ L ++L    S   +P +C ISG+R ++  +       +E II+  Y+GKF G ++PS
Sbjct: 319 GSILSERLGTIGSTLTVPAYCTISGLRTKVPNLVGPKIAFMEVIIIAGYIGKFVGTIIPS 378

Query: 300 LFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIV 359
           L+F + F  +  LA IMCC+G+ ++++Y +  + K I    F +M+  MV ITG++T  V
Sbjct: 379 LYFHIEFWDSFALATIMCCKGLIDLSLYNILLNSKQIGELPFTLMVYTMVAITGLTTIAV 438

Query: 360 GYLYDPSRRYKLDVRRAICKSKQN-SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAF 418
            Y+YDPSRRYK  +R+ +  S+++  L+ILVCI  E NV+P+I+LL+V+NPT  +P++ F
Sbjct: 439 HYIYDPSRRYKTYMRKTVKDSQKDFDLKILVCIQDEANVHPMINLLQVTNPTNTTPLSVF 498

Query: 419 VLQLMELKGSVTAFLKPHHQ---QTKSEAASSTQLI-NAFTQFQRCYYGHVVVQHFTTIA 474
           VL LMEL G   + L  +     +++S   +S+Q I N F QF     G V +Q FT IA
Sbjct: 499 VLHLMELSGRAASILTKNESTKFKSRSFKENSSQHISNVFNQFLLHNQGCVTLQLFTAIA 558

Query: 475 PYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL 534
           PYA+MHDD+C +A+D +  I+IVPFHKQW + G +E+++ S+R +N+ +L+KAPCS G+L
Sbjct: 559 PYASMHDDICYMAMDTKSNILIVPFHKQWSMNGNIEASNGSVRLVNQKLLNKAPCSTGVL 618

Query: 535 VHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQN 594
           + R Q      V   +    I MLF+GGADD+EA+AY+ R+AEHPN  LTV+W     Q 
Sbjct: 619 IDRSQMSGKLLVIHEKCFCEIAMLFLGGADDQEAMAYAMRIAEHPNVKLTVIWVRYMMQQ 678

Query: 595 RPSTEMPDDHELDNQAFDEFKD----SMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLF 650
           +          + N   D  +     S +  K+ F+EEIV+DG GTTQVI+     F L 
Sbjct: 679 K-------QFNIKNPYIDLMEHVRYTSNLKEKVFFKEEIVEDGAGTTQVIRRMEGRFSLV 731

Query: 651 IVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQP 698
           IVG++H       +GL+EW E PELG +G+ L  S+  FSVLVVQQQP
Sbjct: 732 IVGRHHIANSPCIMGLTEWCELPELGPVGNLLATSDFTFSVLVVQQQP 779

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569482|ref|XP_003552929.1| PREDICTED: uncharacterized protein LOC100804488 [Glycine max]

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 286/701 (40%), Positives = 430/701 (61%), Gaps = 13/701 (1%)

Query: 1    GGALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRA 59
             G ++GP  L +     + +F   S+  L TFAEFGMI+H F +GVQI+  L+  I K+A
Sbjct: 881  AGIILGPLFLGQHNSSYEMIFSTPSQMTLTTFAEFGMIIHFFKMGVQINPKLILKIEKQA 940

Query: 60   VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKM 119
            V IG+   +  +  G   F IV ++ + +    + +   V+ +S+T+  VI+G L E+ +
Sbjct: 941  VTIGLIGHMSAIALGGVIFNIV-KVMYPEGIKDTDVHVLVISSSVTTFPVISGFLAEMNI 999

Query: 120  LNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLV 179
            LNSE+GR+A S ++VS    W    ++++   + +  T I P+    V I Y+ I+ F +
Sbjct: 1000 LNSEIGRMAISTSMVSDSCMWILYFVVINSAKAVEQQTYI-PVTEIAVTICYFSILFFFL 1058

Query: 180  RPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL 239
            RPL + I ++N + + M ++HF+  ICI+L      ++ GQ   L AF FGL LPDGPPL
Sbjct: 1059 RPLVIWISNRNPQGKPMTESHFLSIICILLFVAFSASVAGQPPFLVAFCFGLILPDGPPL 1118

Query: 240  GTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPS 299
            G+ L ++LD   S  ++P +C I+G+R  +  + +   I I+ I++ +Y+GKF G ++PS
Sbjct: 1119 GSVLAERLDTIGSTLMVPSYCTITGLRTNVPSLVKSKTITIQVILIATYVGKFVGTILPS 1178

Query: 300  LFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIV 359
            L F + F  +  LALIMCC+G+ ++ +  M  + K I    F + I  MV++TG ++ +V
Sbjct: 1179 LHFQIEFWDSFALALIMCCKGLVDLCMLNMLLNSKAIEELPFTLAIFTMVVVTGFASIVV 1238

Query: 360  GYLYDPSRRYKLDVRRAICKSKQN-SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAF 418
             Y+YDPSRRYK  +R+ I   +    ++ILVC+H E+NV P+I+LL+ SNPT+ +PI+ F
Sbjct: 1239 HYIYDPSRRYKAYIRKTIKGGQHEPDIKILVCVHNEENVYPIINLLQASNPTKATPISVF 1298

Query: 419  VLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHVVVQHFTTIAPYAT 478
            V+ LMEL G   + L     ++KS   SS  + N F QFQ      V++Q FT I PY +
Sbjct: 1299 VIHLMELSGRAISTL----TKSKSTNKSSQHIKNVFDQFQMHNKEGVMLQCFTAITPYVS 1354

Query: 479  MHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRG 538
            MHDD+C +A+D +  I+I+PFHKQW + G +E ++ SIR LN+NVL KAPCSVGI + R 
Sbjct: 1355 MHDDICYMAMDSKSNIVIMPFHKQWSMDGNVEYSNASIRILNQNVLKKAPCSVGIFIDRS 1414

Query: 539  QNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWF-ITTDQNRPS 597
            Q +    +   + L  I M+F+GG DD+EALAYS RMA+HPN  LTV W  I    N+  
Sbjct: 1415 QMRGKLLIIYEKSLCEIAMVFLGGGDDQEALAYSLRMAQHPNVRLTVFWVTIKMQDNQRK 1474

Query: 598  TEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHD 657
            T+ P    +++  +  + +     K+ F+EEIV+DG GTTQVI+     + L IVG++H 
Sbjct: 1475 TKNPYIDLMEHIRYSSYHE----GKVTFKEEIVEDGAGTTQVIRMIEGHYSLVIVGRHHM 1530

Query: 658  PCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQP 698
                 TLGL+EW + PELG LG+ L  S+  FSVLVVQQQP
Sbjct: 1531 ADSPCTLGLTEWCDIPELGPLGNLLATSDFTFSVLVVQQQP 1571

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843492|ref|XP_002889627.1| ATCHX14 [Arabidopsis lyrata subsp. lyrata] gi|297335469|gb|EFH65886.1| ATCHX14 [Arabidopsis lyrata subsp. lyrata]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/716 (37%), Positives = 429/716 (59%), Gaps = 26/716 (3%)

Query: 1   GGALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRA 59
            G ++GPSL  +   Y+    P+  +  L+T +  G  +H F+LG++ID  +++    +A
Sbjct: 85  AGIILGPSLFGQSSAYMQMFLPISGKITLQTLSNLGFFIHLFLLGLRIDASIIRKAGSKA 144

Query: 60  VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKM 119
           ++IG  S  LP   G  +   ++    L  +    I+  + +N+MTS  V T +L EL +
Sbjct: 145 ILIGTASYALPFSLGNLTVLFLKNTYKLPPDVVHCISTVISLNAMTSFPVTTTVLAELNI 204

Query: 120 LNSELGRLAASITIVSHIFGWSASMIL-LSVRDSQDNLTTIKPLYITLVVIVYYIIVIFL 178
           LNS+LGRLA + +IV   F W  +++  + +RD      T+  L+    V V  +++ F+
Sbjct: 205 LNSDLGRLATNCSIVCEAFSWIVALVFRMFLRDG-----TVSSLWSFGWVAVLILVIFFV 259

Query: 179 VRPLTMRIVSKNSEE-ESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGP 237
            RP+ + +  + S   +   +  F   I ++L  ++   ++G ++   AF+ G+ LPDGP
Sbjct: 260 CRPVIIWLTDRRSISIDKSGEIPFFPIIMVLLTISLTSEVLGVHAAFGAFWLGVSLPDGP 319

Query: 238 PLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMV 297
           PLGT L  KLD F +  +LP F AISG++   ++I E     IE +IL++Y  KF G   
Sbjct: 320 PLGTGLTTKLDMFATSLMLPCFIAISGLQTNFFIIGESHVKIIEAVILITYGCKFLGTAA 379

Query: 298 PSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTT 357
            S +  +    A  LAL+MCC+G+ EI    MWKD K++  + F ++I  ++++TGIS  
Sbjct: 380 ASAYCNIQIGDAFSLALLMCCQGVIEIYTCVMWKDEKVLNTECFNLLIITLLLVTGISRF 439

Query: 358 IVGYLYDPSRRYKLDVRRAICKSKQNSL--RILVCIHKEQNVNPLISLLEVSNPTRNSPI 415
           +V  LYDPS+RY+   +R I  ++Q +L  R+L+C++  +NV  +++LLE S P+R SPI
Sbjct: 440 LVVCLYDPSKRYRSKSKRTILNTRQRNLQFRLLLCVYNVENVPSMVNLLEASYPSRFSPI 499

Query: 416 AAFVLQLMELKGSVTAFLKPHHQQTK--SEAASSTQLINAFTQFQRCYYGHVVVQHFTTI 473
           + F L L+ELKG   A L PHHQ  K       ST ++N F +F++   G ++ QHFT  
Sbjct: 500 SVFTLHLVELKGRAHAVLVPHHQMNKLDPNTVQSTHIVNGFQRFEQQNQGTLMAQHFTAA 559

Query: 474 APYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGI 533
           AP+++++DD+CTLALDK+  +I++PFHKQ+ + G +++ + SIR +N NVL KAPCSVGI
Sbjct: 560 APFSSINDDICTLALDKKATLIVIPFHKQYAIDGTVDNVNPSIRNINLNVLEKAPCSVGI 619

Query: 534 LVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ 593
            + RG+ +  R V       ++ ++FI G DD EALA+S R+AEHP  S+T++ F     
Sbjct: 620 FIDRGETEGRRSVLMSYTWRNVAVIFIEGRDDAEALAFSMRIAEHPEVSVTMIHF----- 674

Query: 594 NRPSTEMPDDHELDNQA-------FDEFKD-SMVGNKIIFREEIVKDGIGTTQVIQAFAE 645
            R  + +  +H +D ++        ++FK+ +M   KI +REEIV+DG+ TTQVI +  +
Sbjct: 675 -RHKSSLQQNHAIDTESEFSESYLINDFKNFAMNKPKISYREEIVRDGVETTQVISSLGD 733

Query: 646 TFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQPKES 701
           ++DL +VG++HD       GL++W E PELG++GD   +S+  FSVLV+ QQ  +S
Sbjct: 734 SYDLVVVGRDHDLDSSVLYGLTDWSECPELGVIGDMFASSDFHFSVLVIHQQEGDS 789

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222247|ref|NP_172178.1| cation/H(+) antiporter 14 [Arabidopsis thaliana] gi|75311367|sp|Q9LMJ1.1|CHX14_ARATH RecName: Full=Cation/H(+) antiporter 14; AltName: Full=Protein CATION/H+ EXCHANGER 14; Short=AtCHX14 gi|8954048|gb|AAF82222.1|AC067971_30 Strong similarity to Na+/H+-exchanging protein homolog T27E13.2 gi|7487968 from Arabidopsis thaliana BAC T27E13 gb|AC002338 [Arabidopsis thaliana] gi|91805753|gb|ABE65605.1| cation/hydrogen exchanger [Arabidopsis thaliana] gi|152013343|gb|ABS19937.1| CHX14 [Arabidopsis thaliana] gi|332189940|gb|AEE28061.1| cation/H(+) antiporter 14 [Arabidopsis thaliana]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/716 (36%), Positives = 428/716 (59%), Gaps = 26/716 (3%)

Query: 1   GGALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRA 59
            G ++GPSL  +   Y+    P+  +  L+T +  G  +H F+LG++ID  +++    +A
Sbjct: 85  AGIILGPSLFGQSSAYMQMFLPISGKITLQTLSNLGFFIHLFLLGLRIDASIIRKAGSKA 144

Query: 60  VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKM 119
           ++IG  S  LP   G  +   ++   +L  +    I+  + +N+MTS  V T +L EL +
Sbjct: 145 ILIGTASYALPFSLGNLTVLFLKNTYNLPPDVVHCISTVISLNAMTSFPVTTTVLAELNI 204

Query: 120 LNSELGRLAASITIVSHIFGWSASMIL-LSVRDSQDNLTTIKPLYITLVVIVYYIIVIFL 178
           LNS+LGRLA + +IV   F W  +++  + +RD      T+  ++  + V    +++ F+
Sbjct: 205 LNSDLGRLATNCSIVCEAFSWIVALVFRMFLRDG-----TLASVWSFVWVTALILVIFFV 259

Query: 179 VRPLTMRIVSKNSEE-ESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGP 237
            RP  + +  + S   +   +  F   I ++L  ++   ++G ++   AF+ G+ LPDGP
Sbjct: 260 CRPAIIWLTERRSISIDKAGEIPFFPIIMVLLTISLTSEVLGVHAAFGAFWLGVSLPDGP 319

Query: 238 PLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMV 297
           PLGT L  KL+ F +  +LP F +ISG++   ++I E     IE +IL++Y  KF G   
Sbjct: 320 PLGTGLTTKLEMFATSLMLPCFISISGLQTNFFIIGESHVKIIEAVILITYGCKFLGTAA 379

Query: 298 PSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTT 357
            S +  +    A  LAL+MCC+G+ EI    MWKD K++  + F ++I  ++++TGIS  
Sbjct: 380 ASAYCNIQIGDAFSLALLMCCQGVIEIYTCVMWKDEKVLNTECFNLLIITLLLVTGISRF 439

Query: 358 IVGYLYDPSRRYKLDVRRAICKSKQNSL--RILVCIHKEQNVNPLISLLEVSNPTRNSPI 415
           +V  LYDPS+RY+   +R I  ++Q +L  R+L+C++  +NV  +++LLE S P+R SPI
Sbjct: 440 LVVCLYDPSKRYRSKSKRTILDTRQRNLQFRLLLCVYNVENVPSMVNLLEASYPSRFSPI 499

Query: 416 AAFVLQLMELKGSVTAFLKPHHQQTK--SEAASSTQLINAFTQFQRCYYGHVVVQHFTTI 473
           + F L L+ELKG   A L PHHQ  K       ST ++N F +F++   G ++ QHFT  
Sbjct: 500 SVFTLHLVELKGRAHAVLVPHHQMNKLDPNTVQSTHIVNGFQRFEQQNQGTLMAQHFTAA 559

Query: 474 APYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGI 533
           AP+++++DD+CTLALDK+  +I++PFHKQ+ + G ++  + SIR +N NVL KAPCSVGI
Sbjct: 560 APFSSINDDICTLALDKKATLIVIPFHKQYAIDGTVDHVNPSIRNINLNVLEKAPCSVGI 619

Query: 534 LVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ 593
            + RG+ +  R V       ++ ++FI G DD EALA+S R+AEHP  S+T++ F     
Sbjct: 620 FIDRGETEGRRSVLMSYTWRNVAVIFIEGRDDAEALAFSMRIAEHPEVSVTMIHF----- 674

Query: 594 NRPSTEMPDDHELDNQA-------FDEFKD-SMVGNKIIFREEIVKDGIGTTQVIQAFAE 645
            R  + +  +H +D ++        ++FK+ +M   KI +REEIV+DG+ TTQVI +  +
Sbjct: 675 -RHKSSLQQNHVVDVESELAESYLINDFKNFAMSKPKISYREEIVRDGVETTQVISSLGD 733

Query: 646 TFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQPKES 701
           +FDL +VG++HD       GL++W E PELG++GD   +S+  FSVLV+ QQ  +S
Sbjct: 734 SFDLVVVGRDHDLESSVLYGLTDWSECPELGVIGDMFASSDFHFSVLVIHQQEGDS 789

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826419|ref|XP_002881092.1| ATCHX13 [Arabidopsis lyrata subsp. lyrata] gi|297326931|gb|EFH57351.1| ATCHX13 [Arabidopsis lyrata subsp. lyrata]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/716 (36%), Positives = 426/716 (59%), Gaps = 29/716 (4%)

Query: 2   GALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAV 60
           G ++GPS L   + Y++   P G + +++T +  G ++H F+LG++ID  +++    +A+
Sbjct: 88  GVVLGPSFLGHNVRYMNMFLPAGGKIIIQTLSNVGFVIHLFLLGLKIDGSIIRKAGSKAI 147

Query: 61  IIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKML 120
           +IG  S   P   G  +   + +   L  +  S  ++++ ++SMTS  V T +L EL +L
Sbjct: 148 LIGTASYAFPFSLGNLTILFISKTMGLPSDVISCTSSAISLSSMTSFPVTTTVLAELNIL 207

Query: 121 NSELGRLAASITIVSHIFGWSASMIL-LSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLV 179
           NSELGRLA   ++V  I  W  ++   L  R+      T+  LY   +++   +++ F+ 
Sbjct: 208 NSELGRLATHCSMVCEICSWFVALAFNLYTRER-----TMTSLYAIFMIVGLLLVIYFVF 262

Query: 180 RPLTMRIVSKNSEEESMNQNH---FIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDG 236
           RP+ + +  + S+  SM++     F   + ++ V ++ G  +G ++   AF+ G+ LPDG
Sbjct: 263 RPIIVWLTQRKSK--SMDKKDVVPFFPVLFLLSVASLSGEAMGVHAAFGAFWLGVSLPDG 320

Query: 237 PPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLI---NEKSFIKIEFIILMSYLGKFT 293
           PPLGT+L  KL+ F S   LP F AISG++   + I   +E   + IE I+L++Y  KF 
Sbjct: 321 PPLGTELAAKLEMFASNLFLPCFIAISGLQTNFFEITESHEHHVVMIEIILLITYGCKFL 380

Query: 294 GVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITG 353
           G    S +       A CLA +MCC+GI E+    +WKD +++  + F ++I  ++++TG
Sbjct: 381 GTAAASAYCQTQIGDALCLAFLMCCQGIIEVYTTIVWKDAQVVDTECFNLVIITILLVTG 440

Query: 354 ISTTIVGYLYDPSRRYKLDVRRAICKSKQNSLRILVCI--HKEQNVNPLISLLEVSNPTR 411
           IS  +V YLYDPS+RYK   +R I  ++Q++L++ + +  +  +NV  +++LLE + PTR
Sbjct: 441 ISRFLVVYLYDPSKRYKSKSKRTILNTRQHNLQLRLLLGLYNVENVPSMVNLLEATYPTR 500

Query: 412 NSPIAAFVLQLMELKGSVTAFLKPHHQQTK--SEAASSTQLINAFTQFQRCYYGHVVVQH 469
            +PI+ F L L+ELKG   A L PHHQ  K     A ST ++NAF +F++ Y G ++ QH
Sbjct: 501 FNPISFFTLHLVELKGRAHAVLTPHHQMNKLDPNTAQSTHIVNAFQRFEQKYQGALMAQH 560

Query: 470 FTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPC 529
           FT  APY+++++DVCTLALDK+  +I++PFHKQ+ + G +   +  IR +N NVL  APC
Sbjct: 561 FTAAAPYSSINNDVCTLALDKKATLIVIPFHKQYAIDGTVGQVNGPIRNINLNVLEAAPC 620

Query: 530 SVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFI 589
           SV I + RG+ +  R V      +++ MLFIGG DD EALA   RMAE P+ ++T++ F 
Sbjct: 621 SVAIFIDRGETEGRRSVLMTNTWHNVAMLFIGGKDDAEALALCMRMAEKPDLNVTMIHF- 679

Query: 590 TTDQNRPSTEMPDDHELDNQAFD---EFKDSMVGN-KIIFREEIVKDGIGTTQVIQAFAE 645
                R  + + D+   D   ++   +FK       K+ + EEIV+DG+ TTQVI +  +
Sbjct: 680 -----RHKSALQDEDYSDMSEYNLICDFKSHAANKGKVHYVEEIVRDGVETTQVISSLGD 734

Query: 646 TFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQPKES 701
           ++D+ +VG++HD       GL++W E PELG++GD L + +  FSVLVV QQ  +S
Sbjct: 735 SYDMVLVGRDHDLESSVLYGLTDWSECPELGVIGDMLTSPDFHFSVLVVHQQQGDS 790

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227727|ref|NP_180583.1| cation/H(+) symporter 13 [Arabidopsis thaliana] gi|75277347|sp|O22920.1|CHX13_ARATH RecName: Full=Cation/H(+) symporter 13; AltName: Full=Protein CATION/H+ EXCHANGER 13; Short=AtCHX13 gi|2347190|gb|AAC16929.1| putative Na/H antiporter [Arabidopsis thaliana] gi|20197104|gb|AAM14917.1| putative Na H antiporter [Arabidopsis thaliana] gi|154800382|gb|AAX49543.2| CHX3 [Arabidopsis thaliana] gi|330253267|gb|AEC08361.1| cation/H(+) symporter 13 [Arabidopsis thaliana]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 260/712 (36%), Positives = 421/712 (59%), Gaps = 29/712 (4%)

Query: 2   GALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAV 60
           G ++GPS L   + Y++   P G + +++T +  G ++H F+LG++ID  +++    +A+
Sbjct: 88  GVVLGPSFLGHNVIYMNMFLPAGGKIIIQTLSNVGFVIHLFLLGLKIDGSIIRKAGSKAI 147

Query: 61  IIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKML 120
           +IG  S   P   G  +   + +   L  +  S  ++++ ++SMTS  V T +L EL +L
Sbjct: 148 LIGTASYAFPFSLGNLTIMFISKTMGLPSDVISCTSSAISLSSMTSFPVTTTVLAELNIL 207

Query: 121 NSELGRLAASITIVSHIFGWSASMIL-LSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLV 179
           NSELGRLA   ++V  +  W  ++   L  RD      T+  LY   ++I   +++ F+ 
Sbjct: 208 NSELGRLATHCSMVCEVCSWFVALAFNLYTRDR-----TMTSLYALSMIIGLLLVIYFVF 262

Query: 180 RPLTMRIVSKNSEEESMNQNH---FIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDG 236
           RP+ + +  + ++  SM++     F   + ++ + ++ G  +G ++   AF+ G+ LPDG
Sbjct: 263 RPIIVWLTQRKTK--SMDKKDVVPFFPVLLLLSIASLSGEAMGVHAAFGAFWLGVSLPDG 320

Query: 237 PPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLI---NEKSFIKIEFIILMSYLGKFT 293
           PPLGT+L  KL+ F S   LP F AISG++   + I   +E   + IE I+L++Y  KF 
Sbjct: 321 PPLGTELAAKLEMFASNLFLPCFIAISGLQTNFFEITESHEHHVVMIEIILLITYGCKFL 380

Query: 294 GVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITG 353
           G    S +       A CLA +MCC+GI E+    +WKD +++  + F ++I  ++ +TG
Sbjct: 381 GTAAASAYCQTQIGDALCLAFLMCCQGIIEVYTTIVWKDAQVVDTECFNLVIITILFVTG 440

Query: 354 ISTTIVGYLYDPSRRYKLDVRRAICKSKQNSLRILVCI--HKEQNVNPLISLLEVSNPTR 411
           IS  +V YLYDPS+RYK   +R I  ++Q++L++ + +  +  +NV  +++LLE + PTR
Sbjct: 441 ISRFLVVYLYDPSKRYKSKSKRTILNTRQHNLQLRLLLGLYNVENVPSMVNLLEATYPTR 500

Query: 412 NSPIAAFVLQLMELKGSVTAFLKPHHQQTK--SEAASSTQLINAFTQFQRCYYGHVVVQH 469
            +PI+ F L L+ELKG   A L PHHQ  K     A ST ++NAF +F++ Y G ++ QH
Sbjct: 501 FNPISFFTLHLVELKGRAHALLTPHHQMNKLDPNTAQSTHIVNAFQRFEQKYQGALMAQH 560

Query: 470 FTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPC 529
           FT  APY+++++D+CTLALDK+  +I++PFHKQ+ + G +   +  IR +N NVL  APC
Sbjct: 561 FTAAAPYSSINNDICTLALDKKATLIVIPFHKQYAIDGTVGQVNGPIRTINLNVLDAAPC 620

Query: 530 SVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFI 589
           SV I + RG+ +  R V       ++ MLFIGG DD EALA   RMAE P+ ++T++ F 
Sbjct: 621 SVAIFIDRGETEGRRSVLMTNTWQNVAMLFIGGKDDAEALALCMRMAEKPDLNVTMIHF- 679

Query: 590 TTDQNRPSTEMPDDHELDNQAFDEFKD--SMVGN--KIIFREEIVKDGIGTTQVIQAFAE 645
                R  + + D+   D   ++   D  S   N  KI + EEIV+DG+ TTQVI +  +
Sbjct: 680 -----RHKSALQDEDYSDMSEYNLISDFKSYAANKGKIHYVEEIVRDGVETTQVISSLGD 734

Query: 646 TFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQ 697
            +D+ +VG++HD       GL++W E PELG++GD L + +  FSVLVV QQ
Sbjct: 735 AYDMVLVGRDHDLESSVLYGLTDWSECPELGVIGDMLTSPDFHFSVLVVHQQ 786

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	709
TAIR|locus:2007392	829	CHX14 "cation/hydrogen exchang	0.978	0.837	0.356	9.2e-123
TAIR|locus:2060827	831	ATCHX13 [Arabidopsis thaliana	0.966	0.824	0.349	4.2e-118
TAIR|locus:2054152	821	CHX15 "cation/hydrogen exchang	0.973	0.840	0.343	8.6e-104
TAIR|locus:2172631	822	CHX3 "cation/H+ exchanger 3" [	0.832	0.717	0.330	1.2e-81
TAIR|locus:2082142	817	CHX4 "cation/H+ exchanger 4" [	0.833	0.723	0.334	5.2e-81
TAIR|locus:2082102	783	CHX10 "cation/H+ exchanger 10"	0.974	0.882	0.295	9.7e-80
TAIR|locus:2172646	800	CHX9 "cation/H+ exchanger 9" [	0.970	0.86	0.298	1e-77
TAIR|locus:2090462	800	CHX19 "cation/H+ exchanger 19"	0.957	0.848	0.298	2.4e-76
TAIR|locus:2031968	867	CHX23 "cation/H+ exchanger 23"	0.983	0.803	0.288	5e-76
TAIR|locus:2205165	815	ATCHX5 [Arabidopsis thaliana (	0.653	0.568	0.342	3.2e-75

TAIR|locus:2007392 CHX14 "cation/hydrogen exchanger 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
 Identities = 253/710 (35%), Positives = 400/710 (56%)

Query:     2 GALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAV 60
             G ++GPSL  +   Y+    P+  +  L+T +  G  +H F+LG++ID  +++    +A+
Sbjct:    86 GIILGPSLFGQSSAYMQMFLPISGKITLQTLSNLGFFIHLFLLGLRIDASIIRKAGSKAI 145

Query:    61 IIGITSTLLPLVFGLSSFRIVQRISHLDDETXXXXXXXXXXNSMTSLVVITGLLKELKML 120
             +IG  S  LP   G  +   ++   +L  +           N+MTS  V T +L EL +L
Sbjct:   146 LIGTASYALPFSLGNLTVLFLKNTYNLPPDVVHCISTVISLNAMTSFPVTTTVLAELNIL 205

Query:   121 NSELGRLAASITIVSHIFGWSASMIL-LSVRDSQDNLTTIKPXXXXXXXXXXXXXXXXXX 179
             NS+LGRLA + +IV   F W  +++  + +RD      T+                    
Sbjct:   206 NSDLGRLATNCSIVCEAFSWIVALVFRMFLRDG-----TLASVWSFVWVTALILVIFFVC 260

Query:   180 RPLTMRIVSKNSEE-ESMNQNHFXXXXXXXXXXXXXXXXXXQNSILTAFFFGLCLPDGPP 238
             RP  + +  + S   +   +  F                   ++   AF+ G+ LPDGPP
Sbjct:   261 RPAIIWLTERRSISIDKAGEIPFFPIIMVLLTISLTSEVLGVHAAFGAFWLGVSLPDGPP 320

Query:   239 LGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKI-EFIILMSYLGKFTGVMV 297
             LGT L  KL+ F +  +LP F +ISG++   ++I E S +KI E +IL++Y  KF G   
Sbjct:   321 LGTGLTTKLEMFATSLMLPCFISISGLQTNFFIIGE-SHVKIIEAVILITYGCKFLGTAA 379

Query:   298 PSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMXXXXXXXXX 357
              S +  +    A  LAL+MCC+G+ EI    MWKD K++  + F ++I  +         
Sbjct:   380 ASAYCNIQIGDAFSLALLMCCQGVIEIYTCVMWKDEKVLNTECFNLLIITLLLVTGISRF 439

Query:   358 XXXYLYDPSRRYKLDVRRAICKSKQNSL--RILVCIHKEQNVNPLISLLEVSNPTRNSPI 415
                 LYDPS+RY+   +R I  ++Q +L  R+L+C++  +NV  +++LLE S P+R SPI
Sbjct:   440 LVVCLYDPSKRYRSKSKRTILDTRQRNLQFRLLLCVYNVENVPSMVNLLEASYPSRFSPI 499

Query:   416 AAFVLQLMELKGSVTAFLKPHHQQTKSE--AASSTQLINAFTQFQRCYYGHVVVQHFTTI 473
             + F L L+ELKG   A L PHHQ  K +     ST ++N F +F++   G ++ QHFT  
Sbjct:   500 SVFTLHLVELKGRAHAVLVPHHQMNKLDPNTVQSTHIVNGFQRFEQQNQGTLMAQHFTAA 559

Query:   474 APYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGI 533
             AP+++++DD+CTLALDK+  +I++PFHKQ+ + G ++  + SIR +N NVL KAPCSVGI
Sbjct:   560 APFSSINDDICTLALDKKATLIVIPFHKQYAIDGTVDHVNPSIRNINLNVLEKAPCSVGI 619

Query:   534 LVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ 593
              + RG+ +  R V       ++ ++FI G DD EALA+S R+AEHP  S+T++ F     
Sbjct:   620 FIDRGETEGRRSVLMSYTWRNVAVIFIEGRDDAEALAFSMRIAEHPEVSVTMIHFRHKSS 679

Query:   594 NRPSTEMPDDHEL-DNQAFDEFKD-SMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFI 651
              + +  +  + EL ++   ++FK+ +M   KI +REEIV+DG+ TTQVI +  ++FDL +
Sbjct:   680 LQQNHVVDVESELAESYLINDFKNFAMSKPKISYREEIVRDGVETTQVISSLGDSFDLVV 739

Query:   652 VGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQPKES 701
             VG++HD       GL++W E PELG++GD   +S+  FSVLV+ QQ  +S
Sbjct:   740 VGRDHDLESSVLYGLTDWSECPELGVIGDMFASSDFHFSVLVIHQQEGDS 789

GO:0005886 "plasma membrane" evidence=ISM

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006814 "sodium ion transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2060827 ATCHX13 [Arabidopsis thaliana (taxid:3702)]

 Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
 Identities = 248/710 (34%), Positives = 387/710 (54%)

Query:     2 GALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAV 60
             G ++GPS L   + Y++   P G + +++T +  G ++H F+LG++ID  +++    +A+
Sbjct:    88 GVVLGPSFLGHNVIYMNMFLPAGGKIIIQTLSNVGFVIHLFLLGLKIDGSIIRKAGSKAI 147

Query:    61 IIGITSTLLPLVFGLSSFRIVQRISHLDDETXXXXXXXXXXNSMTSLVVITGLLKELKML 120
             +IG  S   P   G  +   + +   L  +           +SMTS  V T +L EL +L
Sbjct:   148 LIGTASYAFPFSLGNLTIMFISKTMGLPSDVISCTSSAISLSSMTSFPVTTTVLAELNIL 207

Query:   121 NSELGRLAASITIVSHIFGWSASMIL-LSVRDSQDNLTTIKPXXXXXXXXXXXXXXXXXX 179
             NSELGRLA   ++V  +  W  ++   L  RD      T+                    
Sbjct:   208 NSELGRLATHCSMVCEVCSWFVALAFNLYTRDR-----TMTSLYALSMIIGLLLVIYFVF 262

Query:   180 RPLTMRIVSKNSEE-ESMNQNHFXXXXXXXXXXXXXXXXXXQNSILTAFFFGLCLPDGPP 238
             RP+ + +  + ++  +  +   F                   ++   AF+ G+ LPDGPP
Sbjct:   263 RPIIVWLTQRKTKSMDKKDVVPFFPVLLLLSIASLSGEAMGVHAAFGAFWLGVSLPDGPP 322

Query:   239 LGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKS---FIKIEFIILMSYLGKFTGV 295
             LGT+L  KL+ F S   LP F AISG++   + I E      + IE I+L++Y  KF G 
Sbjct:   323 LGTELAAKLEMFASNLFLPCFIAISGLQTNFFEITESHEHHVVMIEIILLITYGCKFLGT 382

Query:   296 MVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMXXXXXXX 355
                S +       A CLA +MCC+GI E+    +WKD +++  + F ++I  +       
Sbjct:   383 AAASAYCQTQIGDALCLAFLMCCQGIIEVYTTIVWKDAQVVDTECFNLVIITILFVTGIS 442

Query:   356 XXXXXYLYDPSRRYKLDVRRAICKSKQNSL--RILVCIHKEQNVNPLISLLEVSNPTRNS 413
                  YLYDPS+RYK   +R I  ++Q++L  R+L+ ++  +NV  +++LLE + PTR +
Sbjct:   443 RFLVVYLYDPSKRYKSKSKRTILNTRQHNLQLRLLLGLYNVENVPSMVNLLEATYPTRFN 502

Query:   414 PIAAFVLQLMELKGSVTAFLKPHHQQTKSE--AASSTQLINAFTQFQRCYYGHVVVQHFT 471
             PI+ F L L+ELKG   A L PHHQ  K +   A ST ++NAF +F++ Y G ++ QHFT
Sbjct:   503 PISFFTLHLVELKGRAHALLTPHHQMNKLDPNTAQSTHIVNAFQRFEQKYQGALMAQHFT 562

Query:   472 TIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSV 531
               APY+++++D+CTLALDK+  +I++PFHKQ+ + G +   +  IR +N NVL  APCSV
Sbjct:   563 AAAPYSSINNDICTLALDKKATLIVIPFHKQYAIDGTVGQVNGPIRTINLNVLDAAPCSV 622

Query:   532 GILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITT 591
              I + RG+ +  R V       ++ MLFIGG DD EALA   RMAE P+ ++T++ F   
Sbjct:   623 AIFIDRGETEGRRSVLMTNTWQNVAMLFIGGKDDAEALALCMRMAEKPDLNVTMIHF--- 679

Query:   592 DQNRPSTEMPDDHELDNQAFDEFKD--SMVGNK--IIFREEIVKDGIGTTQVIQAFAETF 647
                R  + + D+   D   ++   D  S   NK  I + EEIV+DG+ TTQVI +  + +
Sbjct:   680 ---RHKSALQDEDYSDMSEYNLISDFKSYAANKGKIHYVEEIVRDGVETTQVISSLGDAY 736

Query:   648 DLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQ 697
             D+ +VG++HD       GL++W E PELG++GD L + +  FSVLVV QQ
Sbjct:   737 DMVLVGRDHDLESSVLYGLTDWSECPELGVIGDMLTSPDFHFSVLVVHQQ 786

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006813 "potassium ion transport" evidence=IGI

GO:0015079 "potassium ion transmembrane transporter activity" evidence=IGI;IMP;IDA

GO:0006814 "sodium ion transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2054152 CHX15 "cation/hydrogen exchanger 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
 Identities = 249/724 (34%), Positives = 397/724 (54%)

Query:     1 GGALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRA 59
             GG ++GPS+L R   +   +FP  S  VL T A  G++   F++GV++D+ +V+   KRA
Sbjct:    72 GGIVLGPSVLGRSTKFAHTIFPQRSVMVLETMANVGLLYFLFLVGVEMDIMVVRKTGKRA 131

Query:    60 VIIGITSTLLPLVFGLS-SFRIVQRISHLDDETXXXXXXXXXXNSMTSLVVITGLLKELK 118
             + I I   +LP + G + SF + +   HL   T           S+T+  V+  +L ELK
Sbjct:   132 LTIAIGGMVLPFLIGAAFSFSMHRSEDHLGQGTYILFLGVAL--SVTAFPVLARILAELK 189

Query:   119 MLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPXXXXXXXXXXXXXXXXX 178
             ++N+E+GR++ S  +V+ +F W   ++ L++  ++ + T+                    
Sbjct:   190 LINTEIGRISMSAALVNDMFAWI--LLALAIALAESDKTSFASLWVMISSAVFIAVCVFV 247

Query:   179 XRPLTMRIVSKNSEEESMNQNHFXXXXXXXXXXXXXXXXXXQNSILTAFFFGLCLPDGPP 238
              RP    I+ K  E E+ ++ H                    +S+  AF FGL +P+GP 
Sbjct:   248 VRPGIAWIIRKTPEGENFSEFHICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGP- 306

Query:   239 LGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLIN-EKSFIKIEFIILMSYLGKFTGVMV 297
             LG  L++KL+ F SG LLP+F AISG++  +  I    +++ +  +I ++  GK  G ++
Sbjct:   307 LGLTLIEKLEDFVSGLLLPLFFAISGLKTNIAAIQGPATWLTLFLVIFLACAGKVIGTVI 366

Query:   298 PSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMXXXXXXXXX 357
              + F GM   +   L L++  +G+ E+ V  + KD+K++ ++ FA M+            
Sbjct:   367 VAFFHGMPVREGITLGLLLNTKGLVEMIVLNVGKDQKVLDDETFATMVLVALVMTGVITP 426

Query:   358 XXXYLYDPSRRYKLDVRRAICKSKQNS-LRILVCIHKEQNVNPLISLLEVSNPTRNSPIA 416
                 LY P ++     RR I ++K +S LR+LVC+H  +NV  +I+LLE S+PT+ SPI 
Sbjct:   427 IVTILYKPVKKSVSYKRRTIQQTKPDSELRVLVCVHTPRNVPTIINLLEASHPTKRSPIC 486

Query:   417 AFVLQLMELKGSVTAFLKPHHQQTKSEAA-SSTQ-----LINAFTQFQRCYYGHVVVQHF 470
              +VL L+EL G  +A L  H+ +     A + TQ     +INAF  +++ +   V VQ  
Sbjct:   487 IYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQ-HAAFVAVQPL 545

Query:   471 TTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCS 530
             T I+PY+TMH+DVC+LA DKRV  II+PFHKQ  V G +EST+ + R +N+N+L  +PCS
Sbjct:   546 TAISPYSTMHEDVCSLAEDKRVSFIIIPFHKQQTVDGGMESTNPAYRLVNQNLLENSPCS 605

Query:   531 VGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFI- 589
             VGILV RG N + R + +  +   + +LF GG DDREALAY+ RMA+HP  +LTV+ FI 
Sbjct:   606 VGILVDRGLNGATR-LNSNTVSLQVAVLFFGGPDDREALAYAWRMAQHPGITLTVLRFIH 664

Query:   590 ---------TTDQNRPSTEMPD-DH----ELDNQAFDEFK-DSMVGNKIIFREEIVKDGI 634
                      T   N    ++P  DH    +LD+   + F+ ++     I++ E++V +G 
Sbjct:   665 DEDEADTASTRATNDSDLKIPKMDHRKQRQLDDDYINLFRAENAEYESIVYIEKLVSNGE 724

Query:   635 GTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLV- 693
              T   +++   + DLFIVG+        T GL++W E PELG +GD L +S+   +V V 
Sbjct:   725 ETVAAVRSMDSSHDLFIVGRGEGMSSPLTAGLTDWSECPELGAIGDLLASSDFAATVSVL 784

Query:   694 VQQQ 697
             V QQ
Sbjct:   785 VVQQ 788

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006885 "regulation of pH" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2172631 CHX3 "cation/H+ exchanger 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 206/624 (33%), Positives = 320/624 (51%)

Query:   104 MTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWS--ASMILL--SVRDSQDNLTTI 159
             ++S  V+  LL EL++ NSELGRLA S  ++S  F  S  AS+++    ++D Q  L ++
Sbjct:   199 LSSFPVVGNLLFELRLQNSELGRLAISSAVISD-FSTSILASVLIFMKELKDEQTRLGSV 257

Query:   160 ---------KPXXXXXXXXXXXXXXXXXXRPLTMRIVSKNSEEESMNQNHFXXXXXXXXX 210
                      +P                  RPL   I+ +      +   +          
Sbjct:   258 FIGDVIAGNRPLMRAGIVVLFVCIAIYVFRPLMFYIIKQTPSGRPVKAIYLSTIIVMVSG 317

Query:   211 XXXXXXXXXQNSILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELY 270
                      Q+  +  F  GL +P GPPLG+ ++QK +    G  LP F A S   +++ 
Sbjct:   318 SAILANWCKQSIFMGPFILGLAVPHGPPLGSAIIQKYESAIFGTFLPFFIASSSTEIDIS 377

Query:   271 -LINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCM 329
              L   +    I  I++ S++ KF    VP+LF+GM       L+LIM  +GI E+  Y +
Sbjct:   378 ALFGWEGLNGIILIMVTSFVVKFIFTTVPALFYGMPMEDCFALSLIMSFKGIFELGAYAL 437

Query:   330 WKDRKIITNQIFAIMITNMXXXXXXXXXXXXYLYDPSRRYKLDVRRAICKSKQNS-LRIL 388
                R  +  + F +    +            YLYDPSR Y    +R +   K NS LRIL
Sbjct:   438 AYQRGSVRPETFTVACLYITLNSAIIPPILRYLYDPSRMYAGYEKRNMQHLKPNSELRIL 497

Query:   389 VCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTK--SEAAS 446
              CI++  +++P+I+LLE   P+R SP+A +VL LMEL G        H  QT+   E + 
Sbjct:   498 SCIYRTDDISPMINLLEAICPSRESPVATYVLHLMELVGQANPIFISHKLQTRRTEETSY 557

Query:   447 STQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGV- 505
             S  ++ +F +F++ +YG V V  +T ++   TMH D+C LAL+    +I++PFH+ W   
Sbjct:   558 SNNVLVSFEKFRKDFYGSVFVSTYTALSMPDTMHGDICMLALNNTTSLILLPFHQTWSAD 617

Query:   506 GGILESTDLSIRALNRNVLHKAPCSVGILVHRGQN-----KSNRPVYTGEL----LYHIV 556
             G  L S +  IR LN++VL  APCSVG+ V+R  +      S R    G +     Y+I 
Sbjct:   618 GSALISNNNMIRNLNKSVLDVAPCSVGVFVYRSSSGRKNISSGRKTINGTVPNLSSYNIC 677

Query:   557 MLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQN-RPSTEMPDDHELDNQAFDEFK 615
             M+F+GG DDREA+  + RMA  P  ++T+V  ITTD+  R +T    D  LD++   + K
Sbjct:   678 MIFLGGKDDREAVTLATRMARDPRINITIVRLITTDEKARENTVW--DKMLDDELLRDVK 735

Query:   616 DSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPEL 675
              + + + I + E+ ++D   T+ ++++    FD+FIVG+ +      T GL EW E+ EL
Sbjct:   736 SNTLVD-IFYSEKAIEDAAETSSLLRSMVSDFDMFIVGRGNGRTSVFTEGLEEWSEFKEL 794

Query:   676 GILGDTLVNS--NDEFSVLVVQQQ 697
             GI+GD L +   N + SVLV+QQQ
Sbjct:   795 GIIGDLLTSQDFNCQASVLVIQQQ 818

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006814 "sodium ion transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2082142 CHX4 "cation/H+ exchanger 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 207/619 (33%), Positives = 318/619 (51%)

Query:   104 MTSLVVITGLLKELKMLNSELGRLAASITIVSHIFG--WSASMILLS-VRDSQDNLTTI- 159
             ++S  VI  LL EL++ NSELGRLA S  ++S       SA ++ L  ++D +  L ++ 
Sbjct:   198 LSSFPVIGNLLFELRLQNSELGRLAMSSAVISDFSTSILSAVLVFLKELKDDKSRLGSVF 257

Query:   160 --------KPXXXXXXXXXXXXXXXXXXRPLTMRIVSKNSEEESMNQNHFXXXXXXXXXX 211
                     +P                  RPL   I+ +      + + +           
Sbjct:   258 IGDVIVGNRPMKRAGTVVLFVCFAIYIFRPLMFFIIKRTPSGRPVKKFYIYAIIILVFGS 317

Query:   212 XXXXXXXXQNSILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYL 271
                     Q+  +  F  GL +P GPPLG+ ++QK +    G  LP F A S   ++  +
Sbjct:   318 AILADWCKQSIFIGPFILGLAVPHGPPLGSAILQKFESVVFGTFLPFFVATSAEEIDTSI 377

Query:   272 INEKSFIKIEFIILM---SYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYC 328
             +  +S+I ++ I+++   S++ KF    +P+  +GM       L+LIM  +GI E   Y 
Sbjct:   378 L--QSWIDLKSIVILVSVSFIVKFALTTLPAFLYGMPAKDCIALSLIMSFKGIFEFGAYG 435

Query:   329 MWKDRKIITNQIFAIMITNMXXXXXXXXXXXXYLYDPSRRYKLDVRRAICKSKQNS-LRI 387
                 R  I    F ++   +             +YDPSR Y    +R +   K NS LRI
Sbjct:   436 YAYQRGTIRPVTFTVLSLYILLNSAVIPPLLKRIYDPSRMYAGYEKRNMLHMKPNSELRI 495

Query:   388 LVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQT-KSEAAS 446
             L CI+K  ++ P+I+LLE + P+R +P+A +VL LMEL G     L  H  QT KSE  S
Sbjct:   496 LSCIYKTDDIRPMINLLEATCPSRENPVATYVLHLMELVGQANPVLISHRLQTRKSENMS 555

Query:   447 --STQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWG 504
               S  ++ +F QF   ++G V V  +T ++    MH D+C LAL+    +II+PFH+ W 
Sbjct:   556 YNSENVVVSFEQFHNDFFGSVFVSTYTALSVPKMMHGDICMLALNNTTSLIILPFHQTWS 615

Query:   505 V-GGILESTDLSIRALNRNVLHKAPCSVGILVHRGQN--KSNRPVYTGELLYHIVMLFIG 561
               G  + S  L IR LN++VL  +PCSVGI V+R  N  ++ +        Y + MLF+G
Sbjct:   616 ADGSAIVSDSLMIRQLNKSVLDLSPCSVGIFVYRSSNGRRTIKETAANFSSYQVCMLFLG 675

Query:   562 GADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMV-G 620
             G DDREAL+ ++RMA     ++TVV  I+++Q R +     D  LD +   + K +++ G
Sbjct:   676 GKDDREALSLAKRMARDSRITITVVSLISSEQ-RANQATDWDRMLDLELLRDVKSNVLAG 734

Query:   621 NKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGD 680
               I+F EE+V D   T+Q++++ A  +DLFIVG+        T GL EW E+ ELGI+GD
Sbjct:   735 ADIVFSEEVVNDANQTSQLLKSIANEYDLFIVGREKGRKSVFTEGLEEWSEFEELGIIGD 794

Query:   681 TLVNS--NDEFSVLVVQQQ 697
              L +   N + SVLV+QQQ
Sbjct:   795 LLTSQDLNCQASVLVIQQQ 813

GO:0006812 "cation transport" evidence=IEA;IC

GO:0008152 "metabolic process" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006814 "sodium ion transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2082102 CHX10 "cation/H+ exchanger 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 213/720 (29%), Positives = 348/720 (48%)

Query:     2 GALMGPSLLREIPYLDGLFPMGSRY----VLRTFAEFGMILHAFVLGVQIDLGLVKHIRK 57
             G ++GP L   +    G   +         LR  + FG ++  F++ V+    +  H  K
Sbjct:    73 GIVLGPQLFDVLEKSSGKLSVDPALDGIAALRCISVFGTLMFTFLMTVRTSRRVAFHSGK 132

Query:    58 RAVIIGITSTLLPLV-FGLSSFRIVQRISHLDDETXXXXXXXXXXNSMTSLVV--ITGLL 114
               V+IGI S   PL   G  +F       H    T           + +S+++   T +L
Sbjct:   133 LPVVIGIVSFFAPLFGLGFQNFFSDNIDPHYMPLTKALGERTAIVITQSSILLPSTTYIL 192

Query:   115 KELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPXXXXXXXXXXXXX 174
              ELK++NSELGRLA S  +++ I G   SMI+ S++ +  +++                 
Sbjct:   193 LELKIINSELGRLALSACVINDILG-IFSMIVASIQATYIHVSHATAYRDTVAVIIFFLV 251

Query:   175 XXXXXRPLTMRIVSKNSEEESMNQNHFXXXXXXXXXXXXXXXXXXQNSILTAFFFGLCLP 234
                  +P+   ++ +  E++ +   +                      IL     G+ +P
Sbjct:   252 VFLVFKPMVQWVIDRTPEDKPVEDMYIHAVIITALASAAYFVFFNMKYILGPLMIGIIIP 311

Query:   235 DGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRME----LYLINEKSF-IKIEFIILMSYL 289
             +GPPLG+ L  K +  T    LP+    S +R +    L   N+  F I + F+IL+   
Sbjct:   312 EGPPLGSALEAKFERLTMNVFLPISITFSAMRCDGARILSQFNDIFFNIFLTFLILVI-- 369

Query:   290 GKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMX 349
              K    + P L++ +   ++  ++ I+  +  A+  +Y    D   I+   ++ +I    
Sbjct:   370 -KLVACLAPCLYYKLPLSESLAVSFILSYKSFADFVLYEAVLDDTYISQATYSFLILYSL 428

Query:   350 XXXXXXXXXXXYLYDPSRRYKLDVRRAICKSKQNS-LRILVCIHKEQNVNPLISLLEV-S 407
                         +YDP R+Y    +R I   ++NS LRIL C+HK +NV+  I+ L++ S
Sbjct:   429 LNAGIVPTVLRRMYDPRRKYVNYQKRDILHLERNSDLRILTCLHKPENVSETIAFLQLLS 488

Query:   408 NPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKS-EAASSTQLIN-AFTQFQRCYYGHV 465
             +P  + PIA  VL L++L G +   +  H ++ K     S     N AF QF       V
Sbjct:   489 SPNLDFPIAVTVLHLVKLVGQINPIIVSHDKKLKRLNKDSYIHTANLAFRQFVLESLESV 548

Query:   466 VVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLH 525
              V  FT  +    MH+D+CTLALDK   +I+VP  ++W V G+ ES + +IR LN+++L 
Sbjct:   549 TVTTFTAFSHENLMHEDICTLALDKTTSMIVVPSGRKWTVDGLFESDNTAIRHLNQSLLD 608

Query:   526 KAPCSVGILVHRGQNKSNRPVYTGELLY--HIVMLFIGGADDREALAYSRRMAEHPNTSL 583
             +APCS+GILV RGQ  S + + T +  Y   + +LFIGG DDREAL+  +RM  +P   +
Sbjct:   609 RAPCSIGILVDRGQF-SRKSIVTSKKRYIIDVGVLFIGGKDDREALSLVKRMKNNPRIRV 667

Query:   584 TVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAF 643
             TV+  +   +     E   D+ LDN+   + K +     I + E IV   +   + +Q  
Sbjct:   668 TVIRLVFDHE----IESDWDYILDNEGLKDLKSTEDNKDIDYIERIVTSSVEVVKAVQLL 723

Query:   644 AETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLV--NSNDEFSVLVVQQQPKES 701
             AE +DL +VG++HD   +   GL EW+E PELG++GD L   + + + SVLVVQQQ + +
Sbjct:   724 AEEYDLMVVGRDHDMTSQDLSGLMEWVELPELGVIGDLLAARDLSSKVSVLVVQQQQQRT 783

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

TAIR|locus:2172646 CHX9 "cation/H+ exchanger 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 215/720 (29%), Positives = 356/720 (49%)

Query:     2 GALMGPSLLREIPYL-DGL-FPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRA 59
             G ++GP LL  + Y  D L   +     L   A  G+++  F++GV+ +   V  I KR 
Sbjct:    85 GLILGPQLLDLLEYSSDRLSLDIPGNVALEGVARLGLVMFTFLMGVKTNKRAVYQIGKRP 144

Query:    60 VIIGITSTLLPLVFGLS--SFRIVQRISHLDDETXXXXXXXX---XXNSMTSLVVITGLL 114
             ++I ++S  + ++ GL+  +FR+  ++  L                  ++T L VIT L+
Sbjct:   145 IVIAVSSFFVTMISGLAFRNFRL-DKVDPLYMPLRLAPTERSVIVSIQAVTLLPVITHLV 203

Query:   115 KELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPXXXXXXXXXXXXX 174
              ELKM NSELGR+A S   VS   G+  +++ +S   +   ++                 
Sbjct:   204 YELKMSNSELGRIAISTAAVSDFLGF-LTLVCISYVGTYRYVSPGIANRDIVALIILVLV 262

Query:   175 XXXXXRPLTMRIVSKNSEEESMNQNHFXXXXXXXXXXXXXXXXXXQNSILTAFFFGLCLP 234
                  +P+  RIV    E + + + +                   Q  IL A   GL +P
Sbjct:   263 ILFIFKPMAQRIVDMTPEGKPVPKVYLYVTILTAIAASIYLSVFNQMYILGALLVGLAIP 322

Query:   235 DGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILM---SYLGK 291
             DGPPLG+ L  + +   +    P+  A+  ++ ++      SF  I F IL+   + + K
Sbjct:   323 DGPPLGSALEARFESLVTNIFFPISIAVMAMKADVVRALY-SFDDISFNILLLGLTVVVK 381

Query:   292 FTGVMVPSLFF-GMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMXX 350
             +T   VP L F  +   ++  +A IM  +G  ++  + +   R+ ++   + +MI  +  
Sbjct:   382 WTASFVPCLIFCELPTRESVIIATIMNYKGFVDLCFFDVALRRRNLSRATYTVMIIYVLL 441

Query:   351 XXXXXXXXXXYLYDPSRRYKLDVRRAICKSKQNS-LRILVCIHKEQNVNPLISLLEV-SN 408
                        LYDP R+Y   V+R I   K NS L+IL C+HK  N++  ISLLE+ S+
Sbjct:   442 NAGILPTIIKALYDPKRKYIGYVKRDIMHLKTNSDLKILTCLHKPDNISGAISLLELLSS 501

Query:   409 PTRNSP-----IAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQL---INAFTQFQRC 460
             P  N       IA   L L++L G     L PH +++K+    ++ +   + AFT+FQ+ 
Sbjct:   502 PLNNDNKDRGVIAVTALHLVKLAGRTFPILIPHDKRSKARLLQNSYIQTMMLAFTEFQQE 561

Query:   461 YYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALN 520
              +    V  FT  +    M  D+C LALD    +IIVP  ++W   G  ES D+ IR +N
Sbjct:   562 NWESTTVSSFTAYSHENLMDQDICNLALDHLTSMIIVPSGRKWSPDGEYESDDIMIRRVN 621

Query:   521 RNVLHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPN 580
              ++L  APCSVGIL +RG NK  +   T  ++ ++ ++FIGG DDREAL+ ++ M ++  
Sbjct:   622 ESLLDLAPCSVGILNYRGYNKGKKK--TNSII-NVGVIFIGGKDDREALSLAKWMGQNSR 678

Query:   581 TSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSM-VGNKIIFREEIVKDGIGTTQV 639
               LTV+ F++  +   S     D+ +D++  ++ K +  + N   + E++V  G      
Sbjct:   679 VCLTVIRFLSGQELDKSKNW--DYLVDDEVLNDLKATYSLANNFNYMEKVVNGGPAVATT 736

Query:   640 IQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSN--DEFSVLVVQQQ 697
             ++  AE  DL IVG++H+       GL++W+E PELG++GD L + +     SVLVVQQQ
Sbjct:   737 VRLVAEDHDLMIVGRDHEDYSLDLTGLAQWMELPELGVIGDLLASKDLRARVSVLVVQQQ 796

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

TAIR|locus:2090462 CHX19 "cation/H+ exchanger 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 215/720 (29%), Positives = 359/720 (49%)

Query:     1 GGALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRA 59
             GG L+GPS L R   YLD +FP  S  VL T A  G++   F++G+++D   +K   K++
Sbjct:    67 GGILLGPSALGRSKAYLDTIFPKKSLTVLDTLANIGLLFFLFLVGLELDFAAIKKTGKKS 126

Query:    60 VIIGITSTLLPLVFGL-SSFRIVQRISHLDDETXXXXXXXXXXNSMTSLVVITGLLKELK 118
             ++I I    LP + G+ +SF +   IS   D+            S+T+  V+  +L ELK
Sbjct:   127 LLIAIAGISLPFIVGVGTSFVLSATISKGVDQLPFIVFMGVAL-SITAFPVLARILAELK 185

Query:   119 MLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPXXXXXXXXXXXXXXXXX 178
             +L +++GR+A S   V+ +  W   ++ L++  S D  + +                   
Sbjct:   186 LLTTDIGRMAMSAAGVNDVAAWI--LLALAIALSGDGTSPLVSVWVLLCGTGFVIFAVVA 243

Query:   179 XRPLTMRIVSKNSEEESMNQNHFXXXXXXXXXXXXXXXXXXQNSILTAFFFGLCLPDGPP 238
              +PL   +  +  E E + + +                    +++  AF  G+  P   P
Sbjct:   244 IKPLLAYMARRCPEGEPVKELYVCVTLTVVLAASFVTDTIGIHALFGAFVVGIVAPKEGP 303

Query:   239 LGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLIN-EKSFIKIEFIILMSYLGKFTGVMV 297
                 L +K++   SG LLP++ A SG++ ++  I   +S+  +  +IL +  GK  G + 
Sbjct:   304 FCRILTEKIEDLVSGLLLPLYFAASGLKTDVTTIRGAQSWGLLVLVILTTCFGKIVGTVG 363

Query:   298 PSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMXXXXXXXXX 357
              S+   + F +A  L  +M  +G+ E+ V  + KDRK++ +Q FAI++            
Sbjct:   364 SSMLCKVPFREAVTLGFLMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTP 423

Query:   358 XXXYLYDPSRRYKLDVRRAICKSKQNS-LRILVCIHKEQNVNPLISLLEVSNPT-RNSPI 415
                 +Y P+R+      R I +   +S LRIL C H  +N+  LI+L+E S  T +   +
Sbjct:   424 IVMLIYKPARKGAPYKHRTIQRKDHDSELRILACFHSTRNIPTLINLIESSRGTGKKGRL 483

Query:   416 AAFVLQLMELKGSVTAFLKPHHQQTK-----SEAASST-QLINAFTQFQRCYYGHVVVQH 469
               + + LMEL    +A    H  +       ++   ST Q++ AF  +Q  +   V V+ 
Sbjct:   484 CVYAMHLMELSERSSAIAMVHKARNNGLPIWNKIERSTDQMVIAFEAYQ--HLRAVAVRP 541

Query:   470 FTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPC 529
              T I+  +++H+D+CT A  KRV +I++PFHK   + G +ES       +N+ VL +APC
Sbjct:   542 MTAISGLSSIHEDICTSAHQKRVAMILLPFHKHQRMDGAMESIGHRFHEVNQRVLQRAPC 601

Query:   530 SVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFI 589
             SVGILV RG   +++ V   E+ Y +V+ F GG DDREALAY  +M EHP  +LTV  F+
Sbjct:   602 SVGILVDRGLGGTSQ-VVASEVAYKVVIPFFGGLDDREALAYGMKMVEHPGITLTVYKFV 660

Query:   590 T---TDQNRPSTEMPDDHELDNQAFDEFKDSMV----GNK-IIFREEIV--KDGIGTTQV 639
                 T +    +E  +  + + +  +EF   ++    GN+ + + E +V  KD I  T  
Sbjct:   661 AARGTLKRFEKSEHDEKEKKEKETDEEFVRELMNDPRGNESLAYEERVVESKDDIIAT-- 718

Query:   640 IQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFS----VLVVQ 695
             +++ ++  +LF+VG+N      A   L +  + PELG +G  L  S+ EFS    VLVVQ
Sbjct:   719 LKSMSKC-NLFVVGRN-----AAVASLVKSTDCPELGPVGRLL--SSSEFSTTASVLVVQ 770

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005770 "late endosome" evidence=IDA

GO:0006885 "regulation of pH" evidence=IMP

TAIR|locus:2031968 CHX23 "cation/H+ exchanger 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 208/722 (28%), Positives = 336/722 (46%)

Query:     2 GALMGPSLLREIPYLDG-LFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAV 60
             G L  PS+L    ++   +FP     VL TFA   ++ + F+LG+ +DL +V+    + V
Sbjct:    87 GLLFSPSVLGNTRFIIAHVFPYRFTMVLETFANLALVYNIFLLGLGMDLRMVRITELKPV 146

Query:    61 IIGITSTLLPLVFGLSSFRIVQRISHLDDETXXXXXXXXXXNSMTSLVVITGLLKELKML 120
             II  T  L+ L  G   + +     H  D+            + T+   +  +L +LK+L
Sbjct:   147 IIAFTGLLVALPVGAFLYYLPGN-GH-PDKIISGCVFWSVALACTNFPDLARILADLKLL 204

Query:   121 NSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPXXXXXXXXXXXXXXXXXXR 180
              S++GR A    IV+ +  W   +   +          + P                  R
Sbjct:   205 RSDMGRTAMCAAIVTDLCTWVLLVFGFASFSKSGTWNKMMPFVIITTAIFVLLCIFVI-R 263

Query:   181 PLTMRIVSKNSEEESMNQNHFXXXXXXXXXXXXXXXXXXQNSILTAFFFGLCLPDGPPLG 240
             P    I +K  +   +   H                    +SI  AF FGL +P    + 
Sbjct:   264 PGIAWIFAKTVKAGHVGDTHVWFILGGVVLCGLITDACGVHSITGAFLFGLSIPHDHIIR 323

Query:   241 TQLVQKLDFFTSGFLLPVFCAISGIRMEL-YLINEKSFIKIEFIILMSYLGKFTGVMVPS 299
               + +KL  F SG L+P+F  I G+R ++ +++       +  +I  S+L K    ++ S
Sbjct:   324 NMIEEKLHDFLSGILMPLFYIICGLRADIGFMLQFTDKFMMVVVICSSFLVKIVTTVITS 383

Query:   300 LFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMXXXXXXXXXXX 359
             LF  +    A  +  +M  +G   + V    +D K + + ++  M   +           
Sbjct:   384 LFMHIPMRDAFAIGALMNTKGTLSLVVLNAGRDTKALDSPMYTHMTIALLVMSLVVEPLL 443

Query:   360 XYLYDPSRRYKLDVRRAICKSK-QNSLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAF 418
              + Y P ++      R + K K +  LR+L C+H   NV+ + +LL+VSN T+ SP++ F
Sbjct:   444 AFAYKPKKKLAHYKHRTVQKIKGETELRVLACVHVLPNVSGITNLLQVSNATKQSPLSVF 503

Query:   419 VLQLMELKGSVTAFLKPHHQQTKSEA-------ASSTQLINAFTQFQRCYYGHVVVQHFT 471
              + L+EL G  TA L   + + K +A       A S Q+   F   +      + VQ  T
Sbjct:   504 AIHLVELTGRTTASLLIMNDECKPKANFSDRVRAESDQIAETFEAME-VNNDAMTVQTIT 562

Query:   472 TIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSV 531
              ++PYATMH+D+C LA DKRV  II+P+HK     G +   + S   +N+NVL  APCSV
Sbjct:   563 AVSPYATMHEDICVLAEDKRVCFIILPYHKHLTPDGRMGEGNSSHAEINQNVLSHAPCSV 622

Query:   532 GILVHRGQNKSNRPVYTGELLYH-IVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFIT 590
             GILV RG        + GE +   + MLF+GG DDREAL+Y+ RM       LTVV F+ 
Sbjct:   623 GILVDRGMAMVRSESFRGESMKREVAMLFVGGPDDREALSYAWRMVGQHVIKLTVVRFVP 682

Query:   591 -----TDQNRPSTEMPDDHELDNQAFDEFK-DSMVGNKIIFREEIVKDGIGTTQVIQAFA 644
                      + + E   + ++D++   EF   +M  + + + E++V DG  T   I+   
Sbjct:   683 GREALISSGKVAAEYEREKQVDDECIYEFNFKTMNDSSVKYIEKVVNDGQDTIATIREME 742

Query:   645 E--TFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEF--SVLVVQQQPKE 700
             +  ++DL++VG+ ++     T GL++W   PELG +GDTL +SN     SVLV+QQ    
Sbjct:   743 DNNSYDLYVVGRGYNSDSPVTAGLNDWSSSPELGTIGDTLASSNFTMHASVLVIQQYSAT 802

Query:   701 SR 702
              R
Sbjct:   803 KR 804

GO:0005886 "plasma membrane" evidence=ISM

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0010183 "pollen tube guidance" evidence=IGI

GO:0071805 "potassium ion transmembrane transport" evidence=IDA

TAIR|locus:2205165 ATCHX5 [Arabidopsis thaliana (taxid:3702)]

 Score = 655 (235.6 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
 Identities = 169/493 (34%), Positives = 266/493 (53%)

Query:   227 FFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRME-LYLINE----KSF---- 277
             F  GLC+P GPPLG+QLV+K + F +G LLP+F   S ++++  +L N+    + F    
Sbjct:   325 FLLGLCVPHGPPLGSQLVEKFESFNTGILLPLFLFFSMLQIDGPWLANQIGQLRHFDGQL 384

Query:   278 IKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIIT 337
              +   II++ ++ K    M+P+L   M    +  +ALI+  +GI E+  +    +  ++ 
Sbjct:   385 YEALTIIIVVFVAKIIFSMIPALLAKMPLTDSFVMALILSNKGIVELCYFLYGVESNVLH 444

Query:   338 NQIFAIMITNMXXXXXXXXXXXXYLYDPSRRYKLDVRRAICKSKQNS-LRILVCIHKEQN 396
              + F IM T +            YLYD S+R+    +R +   K  S L+ LVCIHK  +
Sbjct:   445 VKSFTIMATMILVSSTISPVLIHYLYDSSKRFISFQKRNLMSLKLGSELKFLVCIHKADH 504

Query:   397 VNPLISLLEVSNPTRNSPIAAFVLQLMELKG-SVTAFLKPHHQQTKSEAAS---STQLIN 452
             ++ +I+LL  S P   S I+ +V+ L+EL G     F+   HQ  K+E  +   S  ++ 
Sbjct:   505 ISGMINLLAQSFPLHESTISCYVIHLVELVGLDNPVFIS--HQMQKAEPGNRSYSNNVLI 562

Query:   453 AFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGI-LES 511
             AF  F+  Y+  + ++ FT I+    MH ++ +LALDK+   +++PFH  W +    + S
Sbjct:   563 AFDNFKH-YWKSISLELFTCISNPRYMHQEIYSLALDKQASFLMLPFHIIWSLDQTTVVS 621

Query:   512 TDLSIRALNRNVLHKAPCSVGILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAY 571
              D+  R  N NVL +APCSVGI VHR +  S +        + +  +F+GG DDREALA 
Sbjct:   622 DDVMRRNANLNVLRQAPCSVGIFVHRQKLLSAQKSSPS---FEVCAIFVGGKDDREALAL 678

Query:   572 SRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEF---KDSMVGNK--IIFR 626
              R+M  +PN +LTV+  I    +  +T    D  LD+    E     ++ VG    + + 
Sbjct:   679 GRQMMRNPNVNLTVLKLIPAKMDGMTTGW--DQMLDSAEVKEVLRNNNNTVGQHSFVEYV 736

Query:   627 EEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSN 686
             EE V DG  T+ ++ + A +FDLF+VG++          LSEW E+ ELG++GD LV+ +
Sbjct:   737 EETVNDGSDTSTLLLSIANSFDLFVVGRSAGVGTDVVSALSEWTEFDELGVIGDLLVSQD 796

Query:   687 --DEFSVLVVQQQ 697
                  SVLVVQQQ
Sbjct:   797 FPRRGSVLVVQQQ 809

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LMJ1	CHX14_ARATH	No assigned EC number	0.3673	0.9732	0.8323	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023997001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (1525 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	709
PLN03159	832	PLN03159, PLN03159, cation/H(+) antiporter 15; Pro	1e-155
COG0475	397	COG0475, KefB, Kef-type K+ transport systems, memb	6e-30
pfam00999	370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	4e-29
TIGR00932	273	TIGR00932, 2a37, transporter, monovalent cation:pr	7e-14

>gnl|CDD|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional

 Score =  469 bits (1208), Expect = e-155
 Identities = 256/727 (35%), Positives = 428/727 (58%), Gaps = 39/727 (5%)

Query: 1   GGALMGPSLL-REIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRA 59
           GG ++GPS+L +   + + +FP+ S  VL T A  G++   F++GV++D+ +++   K+A
Sbjct: 76  GGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKA 135

Query: 60  VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKM 119
           + I I    LP   GL+   I  ++S    +    +   V + S+T+  V+  +L E+K+
Sbjct: 136 LAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVAL-SVTAFPVLARILAEIKL 194

Query: 120 LNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLV 179
           +N+ELGR+A S  +V+ +  W   ++ L++  ++++ T++  L++ L  + + +   ++V
Sbjct: 195 INTELGRIAMSAALVNDMCAWI--LLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVV 252

Query: 180 RPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL 239
           RP    I+ +  E E+ ++ +  + +  V+++  +   +G +S+  AF FGL +P+GP L
Sbjct: 253 RPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGP-L 311

Query: 240 GTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEF-IILMSYLGKFTGVMVP 298
           G  L++KL+ F SG LLP+F AISG++  +  I   +   +   +I+M+  GK  G ++ 
Sbjct: 312 GVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIII 371

Query: 299 SLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTI 358
           + F+ M F +   L  +M  +G+ E+ V  + +D++++ ++ FA+M+   V +T + T +
Sbjct: 372 AFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPV 431

Query: 359 VGYLYDPSRRYKLDVRRAICKSKQNS-LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAA 417
           V  +Y P+RR     RR I +SK ++ LR+LVC+H  +NV  +I+LLE S+PT+ SPI  
Sbjct: 432 VTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICI 491

Query: 418 FVLQLMELKGSVTAFLKPHHQQTKSEAASST------QLINAFTQFQRCYYGHVVVQHFT 471
           +VL L+EL G  +A L  H+ +     A +        +INAF  +++ + G V VQ  T
Sbjct: 492 YVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQ-HAGCVSVQPLT 550

Query: 472 TIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSV 531
            I+PY+TMH+DVC LA DKRV +II+PFHKQ  V G +E+T+ + R +N+NVL  APCSV
Sbjct: 551 AISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSV 610

Query: 532 GILVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITT 591
           GILV RG + + R   + ++ +H+ +LF GG DDREALAY+ RM+EHP  +LTV+ FI  
Sbjct: 611 GILVDRGLSGATRLA-SNQVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPG 669

Query: 592 DQNRPSTEMPDDH-----------------ELDNQAFDEFKDSMVGNK-IIFREEIVKDG 633
           +   P+   P                    +LD +  +EF+    GN+ I++ E++V +G
Sbjct: 670 EDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNG 729

Query: 634 IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEF---- 689
             T   I++     DLFIVG+        T GL++W E PELG +GD L +S  +F    
Sbjct: 730 EETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASS--DFAATV 787

Query: 690 SVLVVQQ 696
           SVLVVQQ
Sbjct: 788 SVLVVQQ 794

Length = 832

>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

 Score =  122 bits (308), Expect = 6e-30
 Identities = 78/376 (20%), Positives = 154/376 (40%), Gaps = 25/376 (6%)

Query: 1   GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKR-A 59
            G ++GP  L        L  + S  ++   AE G++   F++G++ DL  +K + +   
Sbjct: 39  AGIILGPWGL--------LLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVG 90

Query: 60  VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKM 119
           + +       P + GL    ++  I  L    A  + A++   +++S  ++  +L EL +
Sbjct: 91  LGVAQVGLTAPFLLGLL---LLLGILGLSLIAALFLGAAL---ALSSTAIVLKILMELGL 144

Query: 120 LNSELGRLAASITIVSHIFGWS--ASMILLSVRDSQDNLTTIKPLY-ITLVVIVYYIIVI 176
           L +  G+L     +   I      A +  L+   S      +  L  I   + +  ++  
Sbjct: 145 LKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGR 204

Query: 177 FLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDG 236
           +L+ PL  R V+K    E       +  + +VL    L  L+G + IL AF  GL L + 
Sbjct: 205 YLLPPLF-RRVAKTESSELF----ILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSES 259

Query: 237 PPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVM 296
                +L +K++ F  G  +P+F    G+ ++L ++ E   + +  + L   LGK  G  
Sbjct: 260 EYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAI-LGKILGAY 318

Query: 297 VPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGIST 356
           + +   G S   A  + L++   G     +  +      I+  +   ++   +I T I  
Sbjct: 319 LAARLLGFSKRLALGIGLLLRQGGEFAFVLAGI-ALGSAISEALLTAVVILSMITTPILP 377

Query: 357 TIVGYLYDPSRRYKLD 372
            +   L     +   D
Sbjct: 378 LLTPILLKRLLKKSED 393

Length = 397

>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family

 Score =  119 bits (300), Expect = 4e-29
 Identities = 79/360 (21%), Positives = 163/360 (45%), Gaps = 23/360 (6%)

Query: 2   GALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVI 61
           G L+GPS         GL  +     L   AE G+ L  F+ G+++DL  ++   K  ++
Sbjct: 30  GILLGPS---------GLGLVEPDLDLEVLAELGLPLLLFLAGLELDLRELRKNGKSILL 80

Query: 62  IGITSTLLPLVFGLS-SFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKML 120
           + +   L+P + GL  +      I  L+   A    A++   S TS VV+  +LKE   L
Sbjct: 81  LALLGVLIPFLLGLLLALLGGLGIPLLE---ALLFGAAL---SATSPVVVLAILKERGRL 134

Query: 121 NSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLVR 180
           N+ LG L    ++++         +LL+V  +   +  +  L + L++ +   +   L+ 
Sbjct: 135 NTRLGTLILGESVLNDAVAV----VLLAVLLALAGVGGLSDLGLLLLIFLVVALGGLLLG 190

Query: 181 PLTMRIVSK-NSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL 239
            +   ++           +   ++ + + L+  +L  L+G + IL AF  GL L +    
Sbjct: 191 LVFGWLLRLITRFTSGDRELEVLLVLALALLAALLAELLGLSGILGAFLAGLVLSNYAF- 249

Query: 240 GTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPS 299
             +L +KL+ F  G  LP+F    G+ ++L  +     + +  +++   LGK  GV + +
Sbjct: 250 ANELSEKLEPFGYGLFLPLFFVSVGLSLDLSSLLLSLLLLVLLLLVAILLGKLLGVFLLA 309

Query: 300 LFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIV 359
              G+S  +A  +      RG   +A+  +     +I  +++ +++  +V++T +   ++
Sbjct: 310 RLLGLSLREALIVGFGGLQRGAVSLALAAIGLQLGLIDRELYTLLVA-VVLLTTLLKPLL 368

Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Length = 370

>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family

 Score = 72.3 bits (178), Expect = 7e-14
 Identities = 60/270 (22%), Positives = 123/270 (45%), Gaps = 23/270 (8%)

Query: 1   GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAV 60
            G L+GPS L  I  ++G+            AEFG+IL  F++G+++DL  +  +RK A 
Sbjct: 25  AGVLIGPSGLGLISNVEGVN---------HLAEFGVILLMFLIGLELDLERLWKLRKAAF 75

Query: 61  IIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKML 120
            +G+   L+P V        +     L     +++   +++ +++S  V+  +LKE  +L
Sbjct: 76  GVGVLQVLVPGVLLGLLLGHL-----LGLALGAAVVIGIIL-ALSSTAVVVQVLKERGLL 129

Query: 121 NSELGRLAASITIVSHIFGWS--ASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFL 178
            +  G+    I +   I      A + LL+   S +++       + L V + +++++ L
Sbjct: 130 KTPFGQTVLGILLFQDIAVVPLLALLPLLATSASTEHVAL---ALLLLKVFLAFLLLVLL 186

Query: 179 VRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPP 238
            R L   ++   +E    ++     ++ ++  +     L+G +  L AF  G+ L +   
Sbjct: 187 GRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFADLLGLSMALGAFLAGVVLSES-E 244

Query: 239 LGTQLVQKLDFFTSGFLLPVFCAISGIRME 268
              +L   L+    G LLP+F    G+ ++
Sbjct: 245 YRHKLESDLEPI-GGVLLPLFFISVGMSVD 273

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 273

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	709
PLN03159	832	cation/H(+) antiporter 15; Provisional	100.0
KOG1650	769	consensus Predicted K+/H+-antiporter [Inorganic io	100.0
PRK10669	558	putative cation:proton antiport protein; Provision	100.0
PRK03562	621	glutathione-regulated potassium-efflux system prot	100.0
PRK03659	601	glutathione-regulated potassium-efflux system prot	100.0
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	100.0
PRK05326	562	potassium/proton antiporter; Reviewed	100.0
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	100.0
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	100.0
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	99.97
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	99.91
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.89
COG0025	429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.83
TIGR00840	559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.8
PRK14853	423	nhaA pH-dependent sodium/proton antiporter; Provis	99.8
COG3263	574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.76
PRK11175	305	universal stress protein UspE; Provisional	99.75
KOG4505	467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.61
TIGR00773	373	NhaA Na+/H+ antiporter NhaA. These proteins are me	99.6
cd01988	132	Na_H_Antiporter_C The C-terminal domain of a subfa	99.53
PRK14856	438	nhaA pH-dependent sodium/proton antiporter; Provis	99.32
PRK15005	144	universal stress protein F; Provisional	99.32
PRK15456	142	universal stress protein UspG; Provisional	99.31
PRK09560	389	nhaA pH-dependent sodium/proton antiporter; Review	99.3
cd01989	146	STK_N The N-terminal domain of Eukaryotic Serine T	99.27
PRK09561	388	nhaA pH-dependent sodium/proton antiporter; Review	99.27
KOG1965	575	consensus Sodium/hydrogen exchanger protein [Inorg	99.26
PRK14854	383	nhaA pH-dependent sodium/proton antiporter; Provis	99.23
PRK14855	423	nhaA pH-dependent sodium/proton antiporter; Provis	99.22
PRK09982	142	universal stress protein UspD; Provisional	99.2
PRK15118	144	universal stress global response regulator UspA; P	99.17
cd01987	124	USP_OKCHK USP domain is located between the N-term	99.11
PF00582	140	Usp: Universal stress protein family; InterPro: IP	99.1
PF06965	378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	99.09
PRK10116	142	universal stress protein UspC; Provisional	99.01
PRK11175	305	universal stress protein UspE; Provisional	98.97
COG3004	390	NhaA Na+/H+ antiporter [Inorganic ion transport an	98.95
cd00293	130	USP_Like Usp: Universal stress protein family. The	98.89
COG0589	154	UspA Universal stress protein UspA and related nuc	98.6
cd01988	132	Na_H_Antiporter_C The C-terminal domain of a subfa	98.29
cd01989	146	STK_N The N-terminal domain of Eukaryotic Serine T	98.26
PF00582	140	Usp: Universal stress protein family; InterPro: IP	97.96
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.91
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	97.89
PRK15005	144	universal stress protein F; Provisional	97.87
PRK15118	144	universal stress global response regulator UspA; P	97.87
PRK10116	142	universal stress protein UspC; Provisional	97.79
KOG1966	670	consensus Sodium/hydrogen exchanger protein [Inorg	97.77
cd01987	124	USP_OKCHK USP domain is located between the N-term	97.77
PRK12652	357	putative monovalent cation/H+ antiporter subunit E	97.75
cd00293	130	USP_Like Usp: Universal stress protein family. The	97.74
PRK09982	142	universal stress protein UspD; Provisional	97.74
PRK15456	142	universal stress protein UspG; Provisional	97.67
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	97.16
PRK12652	357	putative monovalent cation/H+ antiporter subunit E	97.08
COG0385	319	Predicted Na+-dependent transporter [General funct	97.04
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	96.73
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	96.65
PRK10490	895	sensor protein KdpD; Provisional	96.45
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	96.42
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	96.37
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.25
PF03390	414	2HCT: 2-hydroxycarboxylate transporter family; Int	96.2
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	96.01
TIGR00930	953	2a30 K-Cl cotransporter.	95.93
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	95.88
PRK10669	558	putative cation:proton antiport protein; Provision	95.84
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	95.79
COG0589	154	UspA Universal stress protein UspA and related nuc	95.76
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	95.75
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	95.71
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	95.7
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.7
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	95.57
PRK05326	562	potassium/proton antiporter; Reviewed	95.56
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	95.44
COG2855	334	Predicted membrane protein [Function unknown]	95.16
cd01984	86	AANH_like Adenine nucleotide alpha hydrolases supe	95.15
COG3493	438	CitS Na+/citrate symporter [Energy production and	95.04
TIGR00698	335	conserved hypothetical integral membrane protein.	95.01
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	94.87
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	93.91
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	93.79
TIGR00841	286	bass bile acid transporter. Functionally character	93.79
TIGR00698	335	conserved hypothetical integral membrane protein.	93.57
COG2205	890	KdpD Osmosensitive K+ channel histidine kinase [Si	93.42
PLN03159	832	cation/H(+) antiporter 15; Provisional	93.34
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	93.23
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	93.05
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	91.93
PRK10490	895	sensor protein KdpD; Provisional	91.06
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	90.92
TIGR03136	399	malonate_biotin Na+-transporting malonate decarbox	90.7
PF06826	169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	90.31
PF03977	360	OAD_beta: Na+-transporting oxaloacetate decarboxyl	89.63
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	88.37
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	86.63
TIGR01625	154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	85.77
TIGR02039	294	CysD sulfate adenylyltransferase, small subunit. I	85.12
COG2205	890	KdpD Osmosensitive K+ channel histidine kinase [Si	84.75
COG0025	429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	84.74
PRK15475	433	oxaloacetate decarboxylase subunit beta; Provision	84.3
PRK15477	433	oxaloacetate decarboxylase subunit beta; Provision	84.18
PRK15476	433	oxaloacetate decarboxylase subunit beta; Provision	84.17
TIGR02432	189	lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t	83.39
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	83.07
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	82.8
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	82.7
PRK03818	552	putative transporter; Validated	81.22
TIGR01109	354	Na_pump_decarbB sodium ion-translocating decarboxy	80.84
PRK05253	301	sulfate adenylyltransferase subunit 2; Provisional	80.76

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=100.00  E-value=8.1e-143  Score=1256.44  Aligned_cols=691  Identities=36%  Similarity=0.664  Sum_probs=628.9

Q ss_pred             CcEEEcccccccc-cccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 036516            1 GGALMGPSLLREI-PYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFR   79 (709)
Q Consensus         1 aGiilGPs~Lg~~-~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~   79 (709)
                      |||+|||++||++ .+.+.+||.++.+.+++++++|++++||++|+|+|++.+||++|+++.+|+.++++|+++|+++++
T Consensus        76 aGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~  155 (832)
T PLN03159         76 GGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSF  155 (832)
T ss_pred             HHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999 888999999888899999999999999999999999999999999999999999999999998888


Q ss_pred             HHhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-ccc
Q 036516           80 IVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN-LTT  158 (709)
Q Consensus        80 ~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~-~~~  158 (709)
                      ++.. ...........+++++++|.||+||++++|+|+|+++|+.||+++++++++|+++|++++++.++...+.. ..+
T Consensus       156 ~l~~-~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~  234 (832)
T PLN03159        156 IFHQ-VSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLAS  234 (832)
T ss_pred             HHhh-cccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence            7743 22112224567899999999999999999999999999999999999999999999999988776544322 334


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCC
Q 036516          159 IKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPP  238 (709)
Q Consensus       159 ~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~  238 (709)
                      +|   .++..++|++++++++||++.|+.||++++++.+|.++.++++++++++++++.+|+|+++|||++|+++|+ +|
T Consensus       235 l~---~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~  310 (832)
T PLN03159        235 LW---VLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GP  310 (832)
T ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cc
Confidence            56   667777888889999999999999999988888899999999999999999999999999999999999998 58


Q ss_pred             hhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccch-hhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhh
Q 036516          239 LGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEK-SFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMC  317 (709)
Q Consensus       239 ~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~  317 (709)
                      +++++++|++++++++|+|+||+++|+++|+..+.+. .|..+++++++++++|+++++++++++|+|++|++.+|++||
T Consensus       311 ~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~  390 (832)
T PLN03159        311 LGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMN  390 (832)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999888654 465566777888999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCccccccchhhcccccCCCc-cceeEEEeccCCC
Q 036516          318 CRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSRRYKLDVRRAICKSKQN-SLRILVCIHKEQN  396 (709)
Q Consensus       318 ~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p~~~~~~~~~r~i~~~~~~-e~riLv~v~~~~~  396 (709)
                      +||+++++++++|++.|+++++.|++++++++++|++++|+++++|||+|||..|++|++|+.+++ |+|||+|+|+++|
T Consensus       391 ~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~  470 (832)
T PLN03159        391 TKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRN  470 (832)
T ss_pred             cccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             hHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCcccccc------chhchhHHHHHHHHHHHhcCcceEEEEE
Q 036516          397 VNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKS------EAASSTQLINAFTQFQRCYYGHVVVQHF  470 (709)
Q Consensus       397 ~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~------~~~~~~~i~~af~~~~~~~~~~v~v~~~  470 (709)
                      ++++++|++++++++++|.++|++||+|+++|++|++++|+.+++.      ...++|+++++|+.|++++ ++|+++++
T Consensus       471 v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~  549 (832)
T PLN03159        471 VPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQPL  549 (832)
T ss_pred             HHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhc-CceEEEEE
Confidence            9999999999999999999999999999999999999999865431      2345899999999999753 57999999


Q ss_pred             EEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCCCCCCCcccCCC
Q 036516          471 TTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSNRPVYTGE  550 (709)
Q Consensus       471 ~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~~~~~~~~~~~  550 (709)
                      |+++||++||+|||+.|+|+++|+||+||||+|+.||++++++..+|.+|+||+++||||||||||||..... ..+..+
T Consensus       550 t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~-~~~~~~  628 (832)
T PLN03159        550 TAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGAT-RLASNQ  628 (832)
T ss_pred             EEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccc-cccccc
Confidence            9999999999999999999999999999999999999999988899999999999999999999999975321 123445


Q ss_pred             cceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCC-----------------CCCCCCchhHHHHHHHH
Q 036516          551 LLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRP-----------------STEMPDDHELDNQAFDE  613 (709)
Q Consensus       551 ~~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~-----------------~~~~~~~~~~d~~~l~~  613 (709)
                      ..+||+++|+|||||||||+||+|||+||++++||+||++.++...                 .+.++.|+++||++++|
T Consensus       629 ~~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~e  708 (832)
T PLN03159        629 VSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINE  708 (832)
T ss_pred             cceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999997322110                 01134578899999999


Q ss_pred             HhhhcCCC-cEEEEEEeecChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCc--c
Q 036516          614 FKDSMVGN-KIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEF--S  690 (709)
Q Consensus       614 ~~~~~~~~-~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~--S  690 (709)
                      |+.++.++ ++.|.|++|+||+|+++++|+++++|||+||||+|+.+|++|+||+||+||||||+|||+|||+||.+  |
T Consensus       709 f~~~~~~~~~v~y~E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~S  788 (832)
T PLN03159        709 FRARNAGNESIVYTEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVS  788 (832)
T ss_pred             HHHhcCCCCceEEEEEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCcee
Confidence            99999766 99999999999999999999999899999999999888999999999999999999999999999988  9


Q ss_pred             eEEEeecC
Q 036516          691 VLVVQQQP  698 (709)
Q Consensus       691 vLvvqq~~  698 (709)
                      |||||||.
T Consensus       789 VLVvQQ~~  796 (832)
T PLN03159        789 VLVVQQYV  796 (832)
T ss_pred             EEEEEeec
Confidence            99999997

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-118  Score=1036.06  Aligned_cols=692  Identities=38%  Similarity=0.659  Sum_probs=625.9

Q ss_pred             CcEEEcccccccc-cccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 036516            1 GGALMGPSLLREI-PYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFR   79 (709)
Q Consensus         1 aGiilGPs~Lg~~-~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~   79 (709)
                      |||+|||+.+|++ .+.+.+||.++...+++++.+|+++|+|+.|+|+|.+.++|++|++..||+.++++|+..|.++..
T Consensus        56 ~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~  135 (769)
T KOG1650|consen   56 AGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAF  135 (769)
T ss_pred             HHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhh
Confidence            5999999999999 999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHhhhccCCch----hhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-
Q 036516           80 IVQRISHLDDE----TASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQD-  154 (709)
Q Consensus        80 ~l~~~~~~~~~----~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~-  154 (709)
                      .+.+.......    ...+..++..+++.||||+++++|.|+|++|||+||+++++++++|+.+|.++++..+..+... 
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~  215 (769)
T KOG1650|consen  136 LLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKL  215 (769)
T ss_pred             hccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCC
Confidence            77544331111    1226788889999999999999999999999999999999999999999999888887766442 


Q ss_pred             -CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhc-hhHhHHHHHHHHh
Q 036516          155 -NLTTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVG-QNSILTAFFFGLC  232 (709)
Q Consensus       155 -~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G-~~~~lGaf~~Gl~  232 (709)
                       .....|   .+...++|++++.+++||.+.|+.||+|+++++++.|...++..++.++.+++.++ +|+++|||+.|++
T Consensus       216 ~~~~~~~---~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~  292 (769)
T KOG1650|consen  216 SPLRSVW---DLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLA  292 (769)
T ss_pred             cchHHHH---HHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEe
Confidence             133466   77888889999999999999999999999999999999999999999999999999 8999999999999


Q ss_pred             cCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHH
Q 036516          233 LPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCL  312 (709)
Q Consensus       233 ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~l  312 (709)
                      +|++||+++.+.||+|++.+++|+|+||+.+|+++|+..+..  |......+...+++|++++..++.++|+|+||++++
T Consensus       293 iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~--~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l  370 (769)
T KOG1650|consen  293 IPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRINK--WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLAL  370 (769)
T ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence            999999999999999999999999999999999999988875  666777888889999999999999999999999999


Q ss_pred             HHHhhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCccccccchhhcccccCCCc-cceeEEEe
Q 036516          313 ALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSRRYKLDVRRAICKSKQN-SLRILVCI  391 (709)
Q Consensus       313 g~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p~~~~~~~~~r~i~~~~~~-e~riLv~v  391 (709)
                      |++||+||.+|+++++.+++.|+++++.|++++++++++|.+++|+++.+|||.|+|.+|++|++|+.+++ ++|+|.|+
T Consensus       371 ~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl  450 (769)
T KOG1650|consen  371 GLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCL  450 (769)
T ss_pred             HHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             ccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccc----cchhchhHHHHHHHHHHHhcCcceEE
Q 036516          392 HKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTK----SEAASSTQLINAFTQFQRCYYGHVVV  467 (709)
Q Consensus       392 ~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~----~~~~~~~~i~~af~~~~~~~~~~v~v  467 (709)
                      |++++++++++++|++.+++++|.+++++|++|+.+|+.|++++|+.+++    .....++++..+|+.|++.+.++|.+
T Consensus       451 ~~~~~is~~i~~le~~~~~~~~p~~v~~lhlveL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~~v~v  530 (769)
T KOG1650|consen  451 HGPENISGIINLLELSSGSLESPLSVYALHLVELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQEGVMV  530 (769)
T ss_pred             cCCCcchHHHHHHHHcCCCCCCCcceeeeeeeecccccchhhhhhhhccccccccccccchhhHHHHHHHHHhcCCcEEE
Confidence            99999999999999999998889999999999999999999999976644    12234668999999998744578999


Q ss_pred             EEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCCCCCCCccc
Q 036516          468 QHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSNRPVY  547 (709)
Q Consensus       468 ~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~~~~~~~~  547 (709)
                      +++|+++|+++||+|||.+|.++++++|++|||++|+.++..++++..+|++|++|+++|||||||++|||..+ .....
T Consensus       531 ~~~Ta~s~~~~m~edic~la~~~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~-~~~~~  609 (769)
T KOG1650|consen  531 RTFTALSPEKLMHEDICTLALDKGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRR-SGVTQ  609 (769)
T ss_pred             EeehhhCChhhchhhhhHHHHhhCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCccc-cccee
Confidence            99999999999999999999999999999999999996668999999999999999999999999999998211 11112


Q ss_pred             CCCcceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCC-CCCCCCCCchhHHHHHHHHH-hhhcCCC-cEE
Q 036516          548 TGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQN-RPSTEMPDDHELDNQAFDEF-KDSMVGN-KII  624 (709)
Q Consensus       548 ~~~~~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~-~~~~~~~~~~~~d~~~l~~~-~~~~~~~-~v~  624 (709)
                      ...+.++|++.|+||+||||||++++||++||++++||+|+.++++. +.....++++.+|++..+++ +..+..+ ++.
T Consensus       610 ~~~~~~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~  689 (769)
T KOG1650|consen  610 KRGSSYKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNLDII  689 (769)
T ss_pred             cccceeEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchhhhh
Confidence            23367899999999999999999999999999999999999983331 11112467788888888888 6455444 777


Q ss_pred             EE-EEeecChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCc--ceEEEeecC
Q 036516          625 FR-EEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEF--SVLVVQQQP  698 (709)
Q Consensus       625 y~-e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~--SvLvvqq~~  698 (709)
                      |. |+.++++.||.++++++.++|||++|||+++.+++.++|++||+||||||+|||.|+|+||.+  ||||+|||.
T Consensus       690 ~~~ek~v~~~~et~~~~~~~~~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~  766 (769)
T KOG1650|consen  690 YAEEKIVLNGAETTALLRSITEDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQL  766 (769)
T ss_pred             hhhHHHHhcchhHHHHHHHhccccceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeee
Confidence            88 699999999999999999999999999999999999999999999999999999999999966  999999985

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=100.00  E-value=2.1e-43  Score=404.34  Aligned_cols=344  Identities=16%  Similarity=0.189  Sum_probs=290.8

Q ss_pred             CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036516            1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRI   80 (709)
Q Consensus         1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~   80 (709)
                      +|+++||+++|.+         ...+.++.++++|++++||.+|+|+|++.+++.++.++..++.++++|++++++++++
T Consensus        39 aGillGp~~lg~~---------~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (558)
T PRK10669         39 AGVLAGPFTPGFV---------ADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIAVATLLGMALSAV  109 (558)
T ss_pred             HHHhhCccccccc---------cchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999876         3356789999999999999999999999999998888888888999999988887776


Q ss_pred             HhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CC-Cc
Q 036516           81 VQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDS---QD-NL  156 (709)
Q Consensus        81 l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~---~~-~~  156 (709)
                      ++..       +..++++|++++.||++++.++|+|+|+++++.||+++++++++|+++|++++++..+...   +. +.
T Consensus       110 ~~~~-------~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~  182 (558)
T PRK10669        110 LGWS-------LMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGF  182 (558)
T ss_pred             hCCC-------HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcch
Confidence            6532       4678899999999999999999999999999999999999999999999998877654321   11 11


Q ss_pred             -cchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHH-HHHhchhHhHHHHHHHHhc
Q 036516          157 -TTIKP-LYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTIL-GTLVGQNSILTAFFFGLCL  233 (709)
Q Consensus       157 -~~~~~-~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~-~~~~G~~~~lGaf~~Gl~i  233 (709)
                       ..++. ...++..++|++++.++.|++++|+.++.++.+ .+|.+..+++++++++++. ++.+|+|+++|||++|+++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l  261 (558)
T PRK10669        183 ATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVL  261 (558)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence             11110 114556667777888899999999999987654 5778888888888888865 6999999999999999999


Q ss_pred             CCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHH
Q 036516          234 PDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLA  313 (709)
Q Consensus       234 p~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg  313 (709)
                      |+. |.++++.+...++ .++|+|+||+++|+++|+..+.+. +.....++++.+++|++++++.++++|+|+|+++.+|
T Consensus       262 ~~~-~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~~-~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~g  338 (558)
T PRK10669        262 NES-ELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQQ-PLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIA  338 (558)
T ss_pred             hCC-hhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence            984 6788888777776 789999999999999999876543 3334456667889999999999999999999999999


Q ss_pred             HHhhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 036516          314 LIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYD  364 (709)
Q Consensus       314 ~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~  364 (709)
                      ++|++||+++++++..|++.|+++++.|+++++++++|++++|.+.++..|
T Consensus       339 l~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~  389 (558)
T PRK10669        339 ASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLER  389 (558)
T ss_pred             HHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            999999999999999999999999999999999999988888877777654

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=100.00  E-value=6.9e-43  Score=401.36  Aligned_cols=338  Identities=17%  Similarity=0.204  Sum_probs=281.8

Q ss_pred             CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036516            1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRI   80 (709)
Q Consensus         1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~   80 (709)
                      +|+++||+++|.+         ...+.++.++++|++++||++|+|+|++.+++.+|+++.+|..++++|+++++.++++
T Consensus        38 aGillGP~~lg~i---------~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~  108 (621)
T PRK03562         38 AGCIIGPWGLRLV---------TDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCML  108 (621)
T ss_pred             HHHHhCcccccCC---------CCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999987         3456789999999999999999999999999999999999999999999988887776


Q ss_pred             HhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C-Cccc
Q 036516           81 VQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQ-D-NLTT  158 (709)
Q Consensus        81 l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~-~-~~~~  158 (709)
                      ++..       +..++++|.+++.||++++.++|+|+|+++|+.||.++++++++|+.+|++++++..+...+ . +...
T Consensus       109 ~g~~-------~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~  181 (621)
T PRK03562        109 LGLR-------WQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAIPLVAMIPLLAASGASTTLGA  181 (621)
T ss_pred             hCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhH
Confidence            6432       56789999999999999999999999999999999999999999999999998876554321 1 1111


Q ss_pred             hhhHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcC
Q 036516          159 IKPLYITLVVIV----YYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLP  234 (709)
Q Consensus       159 ~~~~~~~~~~i~----~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip  234 (709)
                      .|  ..++..++    ++++..++.||+++|+.|+.     .+|.+...+++++++++++++.+|+|+++|||++|++++
T Consensus       182 ~~--~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~-----~~e~~~~~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~  254 (621)
T PRK03562        182 FA--LSALKVAGALALVVLGGRYVTRPALRFVARSG-----LREVFTAVALFLVFGFGLLMEEVGLSMALGAFLAGVLLA  254 (621)
T ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhc
Confidence            22  02222222    22333455666666665442     367888888899999999999999999999999999999


Q ss_pred             CCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHH
Q 036516          235 DGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLAL  314 (709)
Q Consensus       235 ~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~  314 (709)
                      +. ++++++.+++++| .++|+|+||+++||++|+..+... ++.++.++++.+++|++++++.++++|+++++++.+|+
T Consensus       255 ~~-~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~~-~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl  331 (621)
T PRK03562        255 SS-EYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLEN-PLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAV  331 (621)
T ss_pred             CC-ccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHH
Confidence            84 6899999999999 799999999999999999877644 33445556678899999999999999999999999999


Q ss_pred             HhhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 036516          315 IMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDP  365 (709)
Q Consensus       315 ~m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p  365 (709)
                      +|+++|++++++++.+.+.|+++++.|+.+++++++ |.+.+|++..+|+|
T Consensus       332 ~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~l-S~~~tP~l~~~~~~  381 (621)
T PRK03562        332 LLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVAL-SMAATPLLLVLLDR  381 (621)
T ss_pred             HHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhhhH
Confidence            999999999999999999999999999999987777 55556666666654

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=100.00  E-value=2.9e-42  Score=395.69  Aligned_cols=340  Identities=17%  Similarity=0.244  Sum_probs=281.2

Q ss_pred             CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036516            1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRI   80 (709)
Q Consensus         1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~   80 (709)
                      ||+++||+++|.+         ...+.+..++++|++++||.+|+|+|++.+++.+|+++.+|..++++|+.+++.++++
T Consensus        38 aGillGP~~lg~i---------~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~  108 (601)
T PRK03659         38 AGIAIGPWGLGFI---------SDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLML  108 (601)
T ss_pred             HHHHhccccccCC---------CcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999987         3346788999999999999999999999999999999999999999999877766655


Q ss_pred             HhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-cch
Q 036516           81 VQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNL-TTI  159 (709)
Q Consensus        81 l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~-~~~  159 (709)
                      ++.       .+..++++|++++.||++++.++|+|+|+++++.||++++..+++|+.+|++++++..+....... .+.
T Consensus       109 ~g~-------~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~  181 (601)
T PRK03659        109 TDF-------SWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDWM  181 (601)
T ss_pred             Hcc-------CHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHH
Confidence            432       157788999999999999999999999999999999999999999999999988876554322111 111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh
Q 036516          160 KPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL  239 (709)
Q Consensus       160 ~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~  239 (709)
                      .....++..++++++..++.||+++|+.+.     +.+|.++..+++++++++++++.+|+|+++|||++|+++++. +.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s-~~  255 (601)
T PRK03659        182 KIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAALLLVLGSALFMDALGLSMALGTFIAGVLLAES-EY  255 (601)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCC-ch
Confidence            100012222222233345566666666443     246788888899999999999999999999999999999994 68


Q ss_pred             hhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhh
Q 036516          240 GTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCR  319 (709)
Q Consensus       240 ~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~k  319 (709)
                      ++++.++++++ .++|+|+||+++||++|+..+.+. |+.++.++++.+++|++++++.++++|+++++++.+|++|+++
T Consensus       256 ~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~~-~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~  333 (601)
T PRK03659        256 RHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYTH-LLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQG  333 (601)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc
Confidence            99999999998 799999999999999999877654 4455566677789999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 036516          320 GIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDP  365 (709)
Q Consensus       320 G~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p  365 (709)
                      |++++++++.+.+.|+++++.|+.+++++++|+ +.+|++..+|+|
T Consensus       334 Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~-~~tP~l~~~~~~  378 (601)
T PRK03659        334 GEFAFVLFSAASSQRLLQGDQMALLLVVVTLSM-MTTPLLMKLIDK  378 (601)
T ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHhHH
Confidence            999999999999999999999999988888755 667777777665

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.1e-41  Score=366.92  Aligned_cols=344  Identities=19%  Similarity=0.319  Sum_probs=293.9

Q ss_pred             CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHH
Q 036516            1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKR-AVIIGITSTLLPLVFGLSSFR   79 (709)
Q Consensus         1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~-~~~i~~~~~~ip~~~g~~~~~   79 (709)
                      ||+++||..++.+        .++.+.++.++++|++++||.+|+|+|++.+||++|+ +...+..++..|++++....+
T Consensus        39 aGiilGp~~~~~~--------~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  110 (397)
T COG0475          39 AGIILGPWGLLLI--------IESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLL  110 (397)
T ss_pred             HHHhcCccccccc--------CCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            6999999554433        4678999999999999999999999999999999999 888899999999988865544


Q ss_pred             H-HhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--c
Q 036516           80 I-VQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN--L  156 (709)
Q Consensus        80 ~-l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~--~  156 (709)
                      . ++..       +..++++|.+++.||+++++++|+|+|.++++.||+++++++++|+.+|++++++..+..++..  .
T Consensus       111 ~~~g~~-------~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~  183 (397)
T COG0475         111 GILGLS-------LIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVG  183 (397)
T ss_pred             HHhccC-------hHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHh
Confidence            3 3222       4679999999999999999999999999999999999999999999999999999988765432  1


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCC
Q 036516          157 TTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDG  236 (709)
Q Consensus       157 ~~~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~  236 (709)
                      .++.   ......+|.++..+..|++.+|+.|+..+. +.+|....+++++++++++++|.+|+|+++|||++|+++++.
T Consensus       184 ~~~~---~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~  259 (397)
T COG0475         184 FILG---LLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSES  259 (397)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhccc
Confidence            2334   555666677666666677777777776432 346788999999999999999999999999999999999997


Q ss_pred             CChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHh
Q 036516          237 PPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIM  316 (709)
Q Consensus       237 ~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m  316 (709)
                      ....++++++++++.+++|+|+||+++|+++|++.+... +..+..++.+..++|++++++.+|..|.+.|++...|+.+
T Consensus       260 ~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~-~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~  338 (397)
T COG0475         260 EYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLEN-LLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLL  338 (397)
T ss_pred             ccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhh
Confidence            544479999999998889999999999999999988765 3346777788899999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 036516          317 CCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDP  365 (709)
Q Consensus       317 ~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p  365 (709)
                      .++|+++++.++.+.+ +.++++.++..+.+++++|.+.+++.+.+++.
T Consensus       339 ~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~  386 (397)
T COG0475         339 RQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLKR  386 (397)
T ss_pred             hhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999886 68889999999888888888877777776644

>PRK05326 potassium/proton antiporter; Reviewed

Probab=100.00  E-value=4e-35  Score=335.78  Aligned_cols=345  Identities=10%  Similarity=0.068  Sum_probs=282.0

Q ss_pred             CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036516            1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRI   80 (709)
Q Consensus         1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~   80 (709)
                      +|+++||+++|.+.       .++.+..+.++++|++++||..|+|+|++.+|+++++++.+++.++++|++++...+++
T Consensus        39 ~GillGp~~lg~i~-------~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~  111 (562)
T PRK05326         39 IGMLAGEDGLGGIQ-------FDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHW  111 (562)
T ss_pred             HHHHhCccccCCcc-------cCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999761       23457889999999999999999999999999999999999999999999885544444


Q ss_pred             HhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhcc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---c
Q 036516           81 VQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKM-LNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN---L  156 (709)
Q Consensus        81 l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~l-l~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~---~  156 (709)
                      +.+.      .+..++++|++++.|+++++.++++|+|+ +++++|+++.+.+.+||.++++++.++..+...+..   +
T Consensus       112 l~g~------~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~  185 (562)
T PRK05326        112 LLGL------DWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPMAVFLTITLIELITGGETGLSW  185 (562)
T ss_pred             HhcC------CHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchH
Confidence            4333      26789999999999999999999999996 899999999999999999999988777766543321   1


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCC
Q 036516          157 TTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDG  236 (709)
Q Consensus       157 ~~~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~  236 (709)
                      ..++   .++..+++.++.+++.++++.|+.+|....  .++.+..+++++++++++++|.+|.|+++|+|++|+++++.
T Consensus       186 ~~~~---~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~--~~~~~~i~~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~  260 (562)
T PRK05326        186 GFLL---LFLQQFGLGALIGLLGGWLLVQLLNRIALP--AEGLYPILVLAGALLIFALTAALGGSGFLAVYLAGLVLGNR  260 (562)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCC
Confidence            1122   344455566666778888899998887421  24567788889999999999999999999999999999987


Q ss_pred             CChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHh
Q 036516          237 PPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIM  316 (709)
Q Consensus       237 ~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m  316 (709)
                      ++..+.-.+++.+...+++.|+||+++|+.+|++.+.+..+...++.+++.+++|++++++..+.+++++||++.+||. 
T Consensus       261 ~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-  339 (562)
T PRK05326        261 PIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSLLPFRFNLREKLFISWV-  339 (562)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeee-
Confidence            6555555566666668899999999999999998776433333333445677899999999999999999999999995 


Q ss_pred             hhhhhHHHHHHHhhhccCccc-hhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 036516          317 CCRGIAEIAVYCMWKDRKIIT-NQIFAIMITNMVIITGISTTIVGYLYD  364 (709)
Q Consensus       317 ~~kG~~~l~~~~~~~~~~~i~-~~~~~~lv~~~ll~t~i~~plv~~ly~  364 (709)
                      ++||.++++++.++++.|+.+ +..|+++.+++++|+.+.++.++.+.|
T Consensus       340 g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~  388 (562)
T PRK05326        340 GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAAR  388 (562)
T ss_pred             cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHH
Confidence            899999999999999999886 467888888888888888877776553

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=100.00  E-value=4.1e-32  Score=284.05  Aligned_cols=246  Identities=23%  Similarity=0.379  Sum_probs=211.1

Q ss_pred             CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHH
Q 036516            1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLP-LVFGLSSFR   79 (709)
Q Consensus         1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip-~~~g~~~~~   79 (709)
                      +|+++||+++|.+         +..+.++.++++|+++++|.+|+|+|++.+||++|++..++..++++| +.+++.+++
T Consensus        25 ~GillGp~~lg~i---------~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (273)
T TIGR00932        25 AGVLIGPSGLGLI---------SNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVLVPGVLLGLLLGH   95 (273)
T ss_pred             HHHHhCcccccCC---------CChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999877         344689999999999999999999999999999999999999999999 677776666


Q ss_pred             HHhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--cc
Q 036516           80 IVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN--LT  157 (709)
Q Consensus        80 ~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~--~~  157 (709)
                      +++..       +..++++|++++.||+|++.++++|+|+.+++.||++++++++||+++|+++++.....++...  ..
T Consensus        96 ~~~~~-------~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~~~~~~  168 (273)
T TIGR00932        96 LLGLA-------LGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSASTEHVA  168 (273)
T ss_pred             HHCCC-------HHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHH
Confidence            65422       4789999999999999999999999999999999999999999999999999888776643221  12


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCC
Q 036516          158 TIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGP  237 (709)
Q Consensus       158 ~~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~  237 (709)
                      ..+   .+...+++.++.+++.|+..+|+.|+.+++++ +|.+..+++.++++.++++|.+|.|+++|||++|+++++. 
T Consensus       169 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~la~~~g~s~~lgaf~aGl~~~~~-  243 (273)
T TIGR00932       169 LAL---LLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFADLLGLSMALGAFLAGVVLSES-  243 (273)
T ss_pred             HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHcCC-
Confidence            223   34445555666677888999999998876543 5778888999999999999999999999999999999996 


Q ss_pred             ChhhHHHhhhhhhhHhhhhHHHHHHhhhccc
Q 036516          238 PLGTQLVQKLDFFTSGFLLPVFCAISGIRME  268 (709)
Q Consensus       238 ~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d  268 (709)
                      +.++++.++++++. ++|+|+||+++|+++|
T Consensus       244 ~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~  273 (273)
T TIGR00932       244 EYRHKLESDLEPIG-GVLLPLFFISVGMSVD  273 (273)
T ss_pred             chHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence            45788999999998 9999999999999987

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=100.00  E-value=5.9e-36  Score=328.34  Aligned_cols=346  Identities=25%  Similarity=0.407  Sum_probs=84.7

Q ss_pred             CcEEEcccccccccccCccCCCCc-HHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHH-HHHHH
Q 036516            1 GGALMGPSLLREIPYLDGLFPMGS-RYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVF-GLSSF   78 (709)
Q Consensus         1 aGiilGPs~Lg~~~~~~~~fp~~~-~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~-g~~~~   78 (709)
                      +|+++||.+++.+         ++ ...++.++++|+.++||.+|+|+|.+.+||++|+++.+++.++++|+++ ++.+.
T Consensus        29 ~Gi~lg~~~~~~~---------~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (380)
T PF00999_consen   29 VGIVLGPSGLGLL---------EPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFLLPFILVGFLLS   99 (380)
T ss_dssp             ----------------------------S-SSHHHHS--SSHHHHTTGGGG-----------------------------
T ss_pred             heeehhhhhhhhc---------cchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccceeeehhhHHHHHHH
Confidence            5899999988855         22 4788899999999999999999999999999999999999999999998 77666


Q ss_pred             HHHhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036516           79 RIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTT  158 (709)
Q Consensus        79 ~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~  158 (709)
                      +++.. .   +..+..++++|.+++.||++++.++++|.+..+++.++++.+.+++||+++++++.+.....+.+.....
T Consensus       100 ~~~~~-~---~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~~~~~~~~~  175 (380)
T PF00999_consen  100 FFLFI-L---GLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSILISLAQASGQSSL  175 (380)
T ss_dssp             ------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT---------------
T ss_pred             Hhhcc-c---hhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhhhhhhhhhhhcccccccc
Confidence            43210 0   1125788999999999999999999999999999999999999999999999998887776522211111


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCC
Q 036516          159 IKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPP  238 (709)
Q Consensus       159 ~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~  238 (709)
                      .+....++..+...++..++.+.+..|+.|+.   ++.++.+..+++++++.+++++|.+|.++++|+|++|+++++ .+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~-~~  251 (380)
T PF00999_consen  176 GQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYGLAEILGLSGILGAFIAGLILSN-SP  251 (380)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhccccccccccccceeeeeehcccc-cc
Confidence            11001222333333333444444444444442   234677888999999999999999999999999999999995 46


Q ss_pred             hhhHHHhhhhhhhHhhhhHHHHHHhhhcccccccc--chhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHh
Q 036516          239 LGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLIN--EKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIM  316 (709)
Q Consensus       239 ~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~--~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m  316 (709)
                      .++++.|+++++.++++.|+||+++|+++|++.+.  ...+.....+.+..+++|++++++.+++.|.++||+..+|+.|
T Consensus       252 ~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~  331 (380)
T PF00999_consen  252 FAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRLFGIPWKEALFIGLGM  331 (380)
T ss_dssp             -----------------------------------------------------------------------HHHHTTTTS
T ss_pred             ccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhhcccccchhHHHHHhh
Confidence            77889999999988999999999999999998885  3356556666667778999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 036516          317 CCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLY  363 (709)
Q Consensus       317 ~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly  363 (709)
                      ++||+++++++..+.+.|.++++.+++++.++++++.+.|+.++.+.
T Consensus       332 ~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~  378 (380)
T PF00999_consen  332 LPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL  378 (380)
T ss_dssp             S--HHHHHHHHHHHHH-------------------------------
T ss_pred             cCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999998888887777654

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=3e-29  Score=247.97  Aligned_cols=343  Identities=17%  Similarity=0.210  Sum_probs=278.6

Q ss_pred             CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036516            1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRI   80 (709)
Q Consensus         1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~   80 (709)
                      ||++.||.--|..         .+...-..++++|++++||-+|++.+++.+......++--++.++.+-...|++++..
T Consensus        39 AGv~~gpftpGFv---------ad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~  109 (408)
T COG4651          39 AGVLAGPFTPGFV---------ADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSL  109 (408)
T ss_pred             HHHhcCCCCCCcc---------cchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHH
Confidence            6888999877766         4455566999999999999999999999998887777777777777777888888887


Q ss_pred             HhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCC--C-
Q 036516           81 VQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRD--SQD--N-  155 (709)
Q Consensus        81 l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~--~~~--~-  155 (709)
                      ++..+       ...+.+|.++|..|+.|+.|-|+|.++.+++-||++++.-++.|+..++.+...-++..  ++.  . 
T Consensus       110 lgws~-------~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~  182 (408)
T COG4651         110 LGWSF-------GTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGF  182 (408)
T ss_pred             cCCCc-------ccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhccccccc
Confidence            76654       34678899999999999999999999999999999999999999999988876655432  111  1 


Q ss_pred             ccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHH-HHhchhHhHHHHHHHHhc
Q 036516          156 LTTIKPL-YITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILG-TLVGQNSILTAFFFGLCL  233 (709)
Q Consensus       156 ~~~~~~~-~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~-~~~G~~~~lGaf~~Gl~i  233 (709)
                      ....+.+ .+..+...|++++.++.|++..|+..+..... ..|.+...++.++++.++.+ +.+|.++.+|||++|+++
T Consensus       183 ~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tG-srElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL  261 (408)
T COG4651         183 ATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATG-SRELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVL  261 (408)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHh
Confidence            1112211 26668889999999999999999998864322 36888899999999988776 889999999999999999


Q ss_pred             CCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHH
Q 036516          234 PDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLA  313 (709)
Q Consensus       234 p~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg  313 (709)
                      .+. .+.++..|..-+. ++.|.-+||+++||.+|+..+.++.+.. .....+...+|-+..+...+.++.|.|.++.++
T Consensus       262 ~es-elshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~~~pl~v-latllii~~gKs~aaf~ivr~Fg~~~~TaLtis  338 (408)
T COG4651         262 AES-ELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILIQQPLAV-LATLLIILFGKSVAAFFIVRAFGHPVRTALTIS  338 (408)
T ss_pred             cch-hhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhhcchHHH-HHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHH
Confidence            986 4677777766665 8889999999999999998877654543 334445567999999999999999999999999


Q ss_pred             HHhhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 036516          314 LIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYD  364 (709)
Q Consensus       314 ~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~  364 (709)
                      ..+.+.|+++++++..|.+.+++++.--..++...++ +++..|+.....+
T Consensus       339 ~SLaqigEFsfIlaGLgi~l~llp~~gr~Lvlagail-sIl~nPllf~~~d  388 (408)
T COG4651         339 ASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAIL-SILLNPLLFALLD  388 (408)
T ss_pred             HHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHH-HHHHhHHHHHHHH
Confidence            9999999999999999999999996555555444444 7777888765543

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=99.91  E-value=1.1e-21  Score=223.01  Aligned_cols=322  Identities=12%  Similarity=0.090  Sum_probs=228.2

Q ss_pred             CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036516            1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRI   80 (709)
Q Consensus         1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~   80 (709)
                      +|+++||.+++.++..++  .......++ ++++++++.+|..|++++.+.+++.++..+.+.+.++.+.++++.+++++
T Consensus        47 ~GiilGP~~l~~idP~~~--g~~d~i~le-IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~  123 (810)
T TIGR00844        47 FGLIVGPHCLNWFNPLSW--GNTDSITLE-ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWI  123 (810)
T ss_pred             HHHHhhhhhhccCChhhc--ccchHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999886511110  001233445 99999999999999999999999999999999999998888888877776


Q ss_pred             HhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHH---HhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-C-CC
Q 036516           81 VQRISHLDDETASSIAASVVVNSMTSLVVITGLLK---ELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDS-Q-DN  155 (709)
Q Consensus        81 l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~---el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~-~-~~  155 (709)
                      +...+     .|..++++|++++.|.+.....+++   ..+ +..++..++.+.+.+||.++++++.+...+... + ..
T Consensus       124 Li~GL-----~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~  197 (810)
T TIGR00844       124 LVPGL-----NFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGG  197 (810)
T ss_pred             HHcCC-----CHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccc
Confidence            63222     2688999999999999655556555   223 457788889999999999999877655444321 1 11


Q ss_pred             -c--cch-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHH
Q 036516          156 -L--TTI-K-PLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFG  230 (709)
Q Consensus       156 -~--~~~-~-~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~G  230 (709)
                       .  .++ . .++.++..+++.++++++.++++.|+.+|...   -.+.+..+.++++++++.+++.+|.+.++++|++|
T Consensus       198 ~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i---~~esfla~~LaLAli~~gla~lLggSGfLAVFVAG  274 (810)
T TIGR00844       198 EIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNII---DRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAG  274 (810)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---chhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence             1  121 1 01133333344444444555555554433221   13456667788888889999999999999999999


Q ss_pred             HhcCCCCChhhH-HHhhhhhhhHhhhhHHHHHHhhhccccccccc-----hhhHHHHHHHHHHHHHHHHHHHHhHhhh--
Q 036516          231 LCLPDGPPLGTQ-LVQKLDFFTSGFLLPVFCAISGIRMELYLINE-----KSFIKIEFIILMSYLGKFTGVMVPSLFF--  302 (709)
Q Consensus       231 l~ip~~~~~~~~-l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~-----~~~~~~~~ii~~~~~~K~~~~~l~~~~~--  302 (709)
                      +++.+.....+. -...+......++..++|+++|+.+....+..     ..|..+++.+++.++.|+.++++.+.+.  
T Consensus       275 l~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~  354 (810)
T TIGR00844       275 TAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPD  354 (810)
T ss_pred             HHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            999986433222 22335556677888999999999998766643     2355556666677788888887754443  


Q ss_pred             CCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCc
Q 036516          303 GMSFLKASCLALIMCCRGIAEIAVYCMWKDRKI  335 (709)
Q Consensus       303 ~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~  335 (709)
                      ..+++|++++|| ..+||..++.++.++++.+.
T Consensus       355 ~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~  386 (810)
T TIGR00844       355 IKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE  386 (810)
T ss_pred             CCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence            368999999999 89999999999999987664

This model is specific for the fungal members of this family.

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=99.89  E-value=9.7e-21  Score=214.41  Aligned_cols=319  Identities=13%  Similarity=0.069  Sum_probs=216.1

Q ss_pred             HHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHhhchHHHH
Q 036516           31 FAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVI  110 (709)
Q Consensus        31 la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv  110 (709)
                      +-.+++..++|..|+++|++.+||+++....+++.++++|++++....+++.+.      ++..++++|+++|.|+++++
T Consensus        51 ~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~vlit~~~v~~~~~~~~~l------~~~~alllGails~TDpvav  124 (525)
T TIGR00831        51 VLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVVVGFSLNWILGI------PLALALILGAVLSPTDAVAV  124 (525)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHhCCCCHHHH
Confidence            445899999999999999999999999999999999999998876666654332      26889999999999999999


Q ss_pred             HHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--C-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036516          111 TGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQD--N-LTTIKPLYITLVVIVYYIIVIFLVRPLTMRIV  187 (709)
Q Consensus       111 ~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~--~-~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~i~  187 (709)
                      .+++++.++ ++++.+++.+.+.+||..+++++.+...+..++.  + ....+   .++..++..+++++++..+..|+.
T Consensus       125 ~~il~~~~~-p~rl~~il~gESllND~~alvlf~~~~~~~~~~~~~~~~~~~~---~f~~~~~~gi~vG~~~g~~~~~l~  200 (525)
T TIGR00831       125 LGTFKSIRA-PKKLSILLEGESLLNDGAALVVFAIAVAVALGKGVFDPLNAAL---DFAVVCVGGIAAGLAVGYLAYRLL  200 (525)
T ss_pred             HHHHhcCCC-CHHHHHHHhhhhhhcchHHHHHHHHHHHHHhcCCCCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999874 7889999999999999999999988877664321  1 11122   222222233333444445555555


Q ss_pred             hhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh-h--hH---HHhhhhhhhHhhhhHHHHH
Q 036516          188 SKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL-G--TQ---LVQKLDFFTSGFLLPVFCA  261 (709)
Q Consensus       188 ~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~-~--~~---l~~kl~~~~~~~flPlFF~  261 (709)
                      |+..+.   +.....+++++.+++++++|.+|.|+++++|++|+++++..+. .  .+   -.+.+-.....++-+++|+
T Consensus       201 ~~~~~~---~~~~~~l~l~~~~~~y~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFv  277 (525)
T TIGR00831       201 RAKIDD---PLVEIALTILAPFAGFLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFI  277 (525)
T ss_pred             HHhccc---cHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            543222   3345678888899999999999999999999999999975433 1  11   1223334457788999999


Q ss_pred             Hhhhcccccc--ccc-h--h-----hHH---HHHHHHHHHHHHHHHHHHh--Hhh-----hCCCHHHHHHHHHHhhhhhh
Q 036516          262 ISGIRMELYL--INE-K--S-----FIK---IEFIILMSYLGKFTGVMVP--SLF-----FGMSFLKASCLALIMCCRGI  321 (709)
Q Consensus       262 ~~G~~~d~~~--l~~-~--~-----~~~---~~~ii~~~~~~K~~~~~l~--~~~-----~~~~~~~~~~lg~~m~~kG~  321 (709)
                      .+|+++....  ... .  .     +..   .+++.......+++..+..  .++     .++++|+.+.++| .+.||.
T Consensus       278 llGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~  356 (525)
T TIGR00831       278 LIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGA  356 (525)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHH
Confidence            9999986311  111 0  0     100   1111122333455433322  111     2478999999999 789999


Q ss_pred             HHHHHHHhh-hc--cC--c-----cchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 036516          322 AEIAVYCMW-KD--RK--I-----ITNQIFAIMITNMVIITGISTTIVGYLY  363 (709)
Q Consensus       322 ~~l~~~~~~-~~--~~--~-----i~~~~~~~lv~~~ll~t~i~~plv~~ly  363 (709)
                      ++++++..- ..  .|  .     +-.-+|.+++++.++.....||+++++-
T Consensus       357 vslA~al~~p~~~~~g~~~p~r~~i~~~~~~vVl~TllvqG~tlp~l~r~l~  408 (525)
T TIGR00831       357 IPLALALSFPNQLLSGMAFPARYELVFLAAGVILFSLLVQGISLPIFVKRKF  408 (525)
T ss_pred             HHHHHHHHccccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence            999877422 11  11  1     1123344555555555555677777754

This model is specific for the bacterial members of this family.

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

Probab=99.83  E-value=1e-17  Score=184.76  Aligned_cols=346  Identities=13%  Similarity=0.128  Sum_probs=248.3

Q ss_pred             cEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036516            2 GALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIV   81 (709)
Q Consensus         2 GiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l   81 (709)
                      |++.||.+++..       +++....-+.+-.+.+..++|..|+|+|.+.++|+++....+++.+.+++.+......+++
T Consensus        40 g~i~g~~~l~~~-------~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l  112 (429)
T COG0025          40 GLLGGPPGLNLI-------SPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWL  112 (429)
T ss_pred             HHHHhhhhhccc-------cccccCChHHHHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677766655       1112222333449999999999999999999999999999999999998887766666666


Q ss_pred             hhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc---cc
Q 036516           82 QRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNL---TT  158 (709)
Q Consensus        82 ~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~---~~  158 (709)
                      .+.     .++..++.+|+++|.|++..+.++.++.+ ...++.++..+.+.+||..+++++.+...+..++...   ..
T Consensus       113 ~~~-----i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~  186 (429)
T COG0025         113 LPG-----IPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWA  186 (429)
T ss_pred             hCC-----hhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHH
Confidence            332     23678999999999999888899988866 6789999999999999999999998887766533211   11


Q ss_pred             hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcC---
Q 036516          159 IK-PLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLP---  234 (709)
Q Consensus       159 ~~-~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip---  234 (709)
                      .. .+...+..++...+..++.+++++|+.+|.  .. .........+...+....++|.+|.+++++.+++|+...   
T Consensus       187 ~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~--~~-~~~~~~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~  263 (429)
T COG0025         187 LLLFLIEALGGILLGLLLGYLLGRLLRRLDRRG--WT-SPLLETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAV  263 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cc-chHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhh
Confidence            11 011333333444445555555555555442  11 134567889999999999999999999999999998774   


Q ss_pred             C--CCChh-hHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhC------CC
Q 036516          235 D--GPPLG-TQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFG------MS  305 (709)
Q Consensus       235 ~--~~~~~-~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~------~~  305 (709)
                      .  ..+.. +...+.+......++--+.|+..|++++........++..+++++..+++|++++++..+..+      .+
T Consensus       264 ~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~  343 (429)
T COG0025         264 RINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLP  343 (429)
T ss_pred             hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC
Confidence            1  11212 333344555567778889999999999987766545666777788889999999999888743      89


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHhhhcc-C-----ccchhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 036516          306 FLKASCLALIMCCRGIAEIAVYCMWKDR-K-----IITNQIFAIMITNMVIITGISTTIVGYLYD  364 (709)
Q Consensus       306 ~~~~~~lg~~m~~kG~~~l~~~~~~~~~-~-----~i~~~~~~~lv~~~ll~t~i~~plv~~ly~  364 (709)
                      ++|++.++| -++||.+.++++...... .     .+-.-.+.+++.++++.+...+|+.++...
T Consensus       344 ~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl~v~g~t~~~l~~~~~~  407 (429)
T COG0025         344 WRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILFSLLVQGLTLPPLAKKLEV  407 (429)
T ss_pred             HHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Confidence            999999999 799999999987655421 1     222233445555555555556777776553

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3

Probab=99.80  E-value=3e-17  Score=185.95  Aligned_cols=328  Identities=11%  Similarity=0.065  Sum_probs=222.3

Q ss_pred             HHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCchhhHHHHHHHHHHhhch
Q 036516           29 RTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISH--LDDETASSIAASVVVNSMTS  106 (709)
Q Consensus        29 ~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~--~~~~~~~~~l~l~~~ls~Ts  106 (709)
                      +.+-.+.+-.++|..|+++|.+.++++.+..+..|+.|+++..++.....+++.....  ....++..++.+|+++|.|+
T Consensus        66 ~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTD  145 (559)
T TIGR00840        66 SYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVD  145 (559)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCc
Confidence            4455567788999999999999999999999999999999988765555554432111  11224788999999999999


Q ss_pred             HHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCccc--h-hhHHH-HHHHHHHHHHHHHHHHH
Q 036516          107 LVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQ-DNLTT--I-KPLYI-TLVVIVYYIIVIFLVRP  181 (709)
Q Consensus       107 ~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~-~~~~~--~-~~~~~-~~~~i~~~~~~~~v~r~  181 (709)
                      +..+..++++.+ .+.++-.++.+.+.+||.++++++.++..+...+ ....+  + ..... +...++ .++++++...
T Consensus       146 PVAVlai~~~~~-v~~~L~~ll~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~G-GiliG~v~G~  223 (559)
T TIGR00840       146 PVAVLAVFEEYH-VNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCG-GLLVGVVFGF  223 (559)
T ss_pred             hHHHHHHHHhcC-CCcchhhheehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            999999999988 5889999999999999999999998777765421 11111  1 10001 111111 3344444555


Q ss_pred             HHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCC-----CChhhHHHhhhhhhhHhhhh
Q 036516          182 LTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDG-----PPLGTQLVQKLDFFTSGFLL  256 (709)
Q Consensus       182 ~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~-----~~~~~~l~~kl~~~~~~~fl  256 (709)
                      +..++.|+....   +.....+++++.++++.++|.+|.+++++.+++|+++.+.     .+..+.-.+.+-.....+.-
T Consensus       224 l~~~l~r~~~~~---~~~e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e  300 (559)
T TIGR00840       224 LVAFITRFTHHI---RQIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSE  300 (559)
T ss_pred             HHHHHHHHhccc---chhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            566666665332   2345667788888899999999999999999999999642     22222223344444567788


Q ss_pred             HHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhh------hCCCHHHHHHHHHHhhhhhhHHHHHHHhh
Q 036516          257 PVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLF------FGMSFLKASCLALIMCCRGIAEIAVYCMW  330 (709)
Q Consensus       257 PlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~------~~~~~~~~~~lg~~m~~kG~~~l~~~~~~  330 (709)
                      .+.|++.|+.+-... ....|...++.++++++.|+++.+..++.      .+.+++|.+.+++ .+.||.+.++++...
T Consensus       301 ~~IFvlLGl~l~~~~-~~~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l  378 (559)
T TIGR00840       301 TLIFIFLGVSLVTEN-HEWNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLL  378 (559)
T ss_pred             HHHHHHHHHHHhcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhC
Confidence            899999999763221 11134444445556678899888766543      3589999999998 788999999887654


Q ss_pred             hccCccchhHHHH-----HHHHHHHHHHHHHHHHHhhc
Q 036516          331 KDRKIITNQIFAI-----MITNMVIITGISTTIVGYLY  363 (709)
Q Consensus       331 ~~~~~i~~~~~~~-----lv~~~ll~t~i~~plv~~ly  363 (709)
                      -+.+.-..+.+..     +++++++.....+|+++++.
T Consensus       379 ~~~~~~~~~~i~~~t~~VVl~TvlvqG~T~~pl~~~L~  416 (559)
T TIGR00840       379 DEKIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLK  416 (559)
T ss_pred             CCCCcchHHHHHHHHHeeehHHHHHHHhhHHHHHHHhC
Confidence            3332222333322     33333444444578888764

This model is specific for the eukaryotic members members of this family.

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.80  E-value=1.4e-16  Score=171.03  Aligned_cols=303  Identities=15%  Similarity=0.237  Sum_probs=199.7

Q ss_pred             HHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHH
Q 036516           26 YVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAAS   98 (709)
Q Consensus        26 ~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l   98 (709)
                      ..+..+-+=|++ +|.|.+|+|++-+.+.   ++.||+   ..-++.|+++|.++-.    .+....+      ...--+
T Consensus        60 ~~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~----~~n~~~~------~~~~GW  129 (423)
T PRK14853         60 LSLGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYV----AVNLAGG------GALRGW  129 (423)
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHH----HHhCCch------hhhhhh
Confidence            355666666766 8889999999776553   233333   3567888999986522    2221110      111222


Q ss_pred             HHHHhhchHHHHHHHHHHhcc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHH
Q 036516           99 VVVNSMTSLVVITGLLKELKM-LNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIF  177 (709)
Q Consensus        99 ~~~ls~Ts~~vv~~iL~el~l-l~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  177 (709)
                       .+-+.|+.+....+|..+|- ..+.++...++.|++||+.++++++++.+   ++  ....+   .......+.  ++ 
T Consensus       130 -~Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfYt---~~--i~~~~---L~~a~~~~~--~l-  197 (423)
T PRK14853        130 -AIPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFYT---SE--LNLEA---LLLALVPLA--LF-  197 (423)
T ss_pred             -hhhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhheccC---CC--CCHHH---HHHHHHHHH--HH-
Confidence             34456888999999999885 48899999999999999999999988762   11  22222   222221111  11 


Q ss_pred             HHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCC-----------ChhhHHHhh
Q 036516          178 LVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGP-----------PLGTQLVQK  246 (709)
Q Consensus       178 v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~-----------~~~~~l~~k  246 (709)
                             |+.+|.    ++++.+.++++.  +++.+..+..|+|+.+|+|++|+++|..+           +..++++++
T Consensus       198 -------~~l~~~----~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~  264 (423)
T PRK14853        198 -------WLLVQK----RVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHR  264 (423)
T ss_pred             -------HHHHHc----CCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHH
Confidence                   222232    234455665553  36667889999999999999999999521           335789999


Q ss_pred             hhhhhHhhhhHHH-HHHhhhcccc-ccccch-hhHHHHHHHHHHHHHHHHHHHHhHhhh----------CCCHHHHHHHH
Q 036516          247 LDFFTSGFLLPVF-CAISGIRMEL-YLINEK-SFIKIEFIILMSYLGKFTGVMVPSLFF----------GMSFLKASCLA  313 (709)
Q Consensus       247 l~~~~~~~flPlF-F~~~G~~~d~-~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg  313 (709)
                      +++++..+++|+| |+..|.++|. ..+.+. .-.....+++..++||.+|.+..++..          +++|++-+.+|
T Consensus       265 L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~  344 (423)
T PRK14853        265 LRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVA  344 (423)
T ss_pred             HHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHH
Confidence            9999999999999 9999999986 434111 111455677778899999987776543          47899999999


Q ss_pred             HHhhhhhhHHHHHHHhhhc-cCccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 036516          314 LIMCCRGIAEIAVYCMWKD-RKIITNQIFAIMITNMVIITGISTTIVGYLY  363 (709)
Q Consensus       314 ~~m~~kG~~~l~~~~~~~~-~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly  363 (709)
                      ++-+.--.+++.+.+.+++ ..-..++.--.+.+.++++..+...+++...
T Consensus       345 ~L~GIGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~s~~~G~~~l~~~~  395 (423)
T PRK14853        345 LLAGIGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLIAALLASVLLRLRN  395 (423)
T ss_pred             HHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9877778899999999994 2212223333344444553444444444433

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

Probab=99.76  E-value=5.1e-17  Score=169.17  Aligned_cols=330  Identities=12%  Similarity=0.087  Sum_probs=264.1

Q ss_pred             cEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036516            2 GALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIV   81 (709)
Q Consensus         2 GiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l   81 (709)
                      |++.|--++|.++|       ++...-..++++++++++|-.|+.++++.+|...++++.++..|++++-.+...+++++
T Consensus        41 Gm~aG~dGlg~I~f-------dNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~l  113 (574)
T COG3263          41 GMLAGVDGLGGIEF-------DNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYL  113 (574)
T ss_pred             HHHcCCCccccccc-------CccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            66778888887733       44567778999999999999999999999999999999999999999988776666666


Q ss_pred             hhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCccchh
Q 036516           82 QRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQ-DNLTTIK  160 (709)
Q Consensus        82 ~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~-~~~~~~~  160 (709)
                      .+..      |.+.+++|+++..|.-+.+..+|.+.+ +|.+++.+.--.+--||-.++++...++-+...+ ++..+..
T Consensus       114 l~l~------wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~stLEiESGtNDPmAvfLTitlieli~~get~l~~~~  186 (574)
T COG3263         114 LNLD------WLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWGF  186 (574)
T ss_pred             hccH------HHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhhEEeecCCCCceeeehhHHHHHHHhccccccCHHH
Confidence            5543      799999999999999999999998887 5788888888888899999988876555554443 2222211


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh-
Q 036516          161 PLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL-  239 (709)
Q Consensus       161 ~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~-  239 (709)
                       +..++...++.++..+....+..|+++|..-+   +..|..+++...++...+++.+|-++++..+++|+.+.+.+-. 
T Consensus       187 -ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd---~GL~pil~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~  262 (574)
T COG3263         187 -LLGFLQQFGLGLLLGLGGGKLLLQLINRINLD---SGLYPILALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRA  262 (574)
T ss_pred             -HHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchh
Confidence             11456677788888888889999999987322   4578889999999999999999999999999999999997533 


Q ss_pred             hhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhh
Q 036516          240 GTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCR  319 (709)
Q Consensus       240 ~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~k  319 (709)
                      ++.+.+..|.+ +++..-+.|...|+...++.+....+..+++.+...++.|.+++++...-++.++||.++++| -.-|
T Consensus       263 r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLR  340 (574)
T COG3263         263 RHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLR  340 (574)
T ss_pred             HHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHHHhHHHHHHhhcccccCccchheeeh-hhcc
Confidence            34566666666 788888899999999999887665566566777778899999999998889999999999999 6899


Q ss_pred             hhHHHHHHHhhhccCccchh-HHHHHHHHHHHH
Q 036516          320 GIAEIAVYCMWKDRKIITNQ-IFAIMITNMVII  351 (709)
Q Consensus       320 G~~~l~~~~~~~~~~~i~~~-~~~~lv~~~ll~  351 (709)
                      |.+.++++....-.|.-+.+ .|++..+.++++
T Consensus       341 GAv~IilAifpm~aglena~l~FNvAF~VVLvS  373 (574)
T COG3263         341 GAVPIILAIFPMMAGLENARLFFNVAFFVVLVS  373 (574)
T ss_pred             cchhhhHhhhHHhcCCccceEEeehhHHHHHHH
Confidence            99999999888777765544 344444444443

>PRK11175 universal stress protein UspE; Provisional

Probab=99.75  E-value=5.4e-17  Score=172.69  Aligned_cols=275  Identities=11%  Similarity=0.100  Sum_probs=166.7

Q ss_pred             eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHh-cCcc
Q 036516          386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRC-YYGH  464 (709)
Q Consensus       386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~-~~~~  464 (709)
                      |||+|++.+++...+++.+..++  +....+++++|+++......+................++..+.++++.+. ...+
T Consensus         5 ~ILv~~D~s~~~~~al~~a~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (305)
T PRK11175          5 NILVVIDPNQDDQPALRRAVYLA--QRNGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPYLDAG   82 (305)
T ss_pred             eEEEEcCCCccccHHHHHHHHHH--HhcCCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            79999999999999999998888  44456899999885432211111100000000000111111222222211 1245


Q ss_pred             eEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCCCCCCC
Q 036516          465 VVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSNR  544 (709)
Q Consensus       465 v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~~~~~  544 (709)
                      ++++..+...  .+.+++|++.|+++++||||||+|++.+..+.      .+|++.+++++++||||.++.++....   
T Consensus        83 ~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~------~~gs~~~~l~~~~~~pvlvv~~~~~~~---  151 (305)
T PRK11175         83 IPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESV------IFTPTDWHLLRKCPCPVLMVKDQDWPE---  151 (305)
T ss_pred             CceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhh------ccChhHHHHHhcCCCCEEEecccccCC---
Confidence            7777655532  48899999999999999999999987654433      589999999999999998876532111   


Q ss_pred             cccCCCcceEEEEeeccCcCh-------HHHHHHHHHHhcCC-CeEEEEEEeeecCCC--C---CC-CCCCCchhHH---
Q 036516          545 PVYTGELLYHIVMLFIGGADD-------REALAYSRRMAEHP-NTSLTVVWFITTDQN--R---PS-TEMPDDHELD---  607 (709)
Q Consensus       545 ~~~~~~~~~~V~~~f~Gg~dd-------reAl~~a~rma~~~-~~~ltvl~v~~~~~~--~---~~-~~~~~~~~~d---  607 (709)
                             ..+|+++.-|++++       ..|+++|.++|+.. +++++++|+.++...  .   +. ..++.++...   
T Consensus       152 -------~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (305)
T PRK11175        152 -------GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQH  224 (305)
T ss_pred             -------CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHH
Confidence                   23688777766542       67999999999998 999999999752110  0   00 0011111111   


Q ss_pred             HHHHHHHhhhcCCCcEEEEEEeecCh---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhc
Q 036516          608 NQAFDEFKDSMVGNKIIFREEIVKDG---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVN  684 (709)
Q Consensus       608 ~~~l~~~~~~~~~~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las  684 (709)
                      ++.++++..+..-.   ..+..+..|   +++.+.+++  .++||+++|.++..      |+.+|    =+|-..+-++.
T Consensus       225 ~~~l~~~~~~~~~~---~~~~~v~~G~~~~~I~~~a~~--~~~DLIVmG~~~~~------~~~~~----llGS~a~~v~~  289 (305)
T PRK11175        225 LLAMKALRQKFGID---EEQTHVEEGLPEEVIPDLAEH--LDAELVILGTVGRT------GLSAA----FLGNTAEHVID  289 (305)
T ss_pred             HHHHHHHHHHhCCC---hhheeeccCCHHHHHHHHHHH--hCCCEEEECCCccC------CCcce----eecchHHHHHh
Confidence            12344444332211   111222233   224444444  38999999998752      12222    47888888886


Q ss_pred             CCCCcceEEEee
Q 036516          685 SNDEFSVLVVQQ  696 (709)
Q Consensus       685 ~d~~~SvLvvqq  696 (709)
                      . .+|+||||..
T Consensus       290 ~-~~~pVLvv~~  300 (305)
T PRK11175        290 H-LNCDLLAIKP  300 (305)
T ss_pred             c-CCCCEEEEcC
Confidence            4 6679999963

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=99.61  E-value=1.5e-13  Score=138.68  Aligned_cols=319  Identities=10%  Similarity=0.125  Sum_probs=216.0

Q ss_pred             CcEEEcccccccccccCccCCCCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036516            1 GGALMGPSLLREIPYLDGLFPMGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRI   80 (709)
Q Consensus         1 aGiilGPs~Lg~~~~~~~~fp~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~   80 (709)
                      .|+++||.+++..+-..+   .+.+.....++.+=+..-.|.+++|+.-..+.++++..+..-+--.+.-+.+.+.+.|.
T Consensus        47 tGlI~Gphvlnlfdp~~w---gn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~  123 (467)
T KOG4505|consen   47 TGLIFGPHVLNLFDPNSW---GNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYA  123 (467)
T ss_pred             hheeechhhhhhcCCccc---cCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999887611111   12345667789999999999999999999999999887654333333333344444455


Q ss_pred             HhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhcccc---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--
Q 036516           81 VQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLN---SELGRLAASITIVSHIFGWSASMILLSVRDSQDN--  155 (709)
Q Consensus        81 l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~---s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~--  155 (709)
                      +.+...     ...++.++.+++.|.+.....+..+-+..+   .++..+..+.+-.||..++.++-+.+-+...+..  
T Consensus       124 l~p~ln-----f~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaipflflai~Ll~h~~~r~  198 (467)
T KOG4505|consen  124 LIPNLN-----FLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRK  198 (467)
T ss_pred             Hhcccc-----HHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCchhc
Confidence            543221     467889999999999555555666555544   3556678888999999999888776665433211  


Q ss_pred             --ccchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHH
Q 036516          156 --LTTIK--PLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGL  231 (709)
Q Consensus       156 --~~~~~--~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl  231 (709)
                        ..++.  .+|-....+.+..+++++.|..++.--|+.--+   .|+++.+-+++.+.|+.+.+.+|.+-.+-.|.||.
T Consensus       199 ~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid---~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi  275 (467)
T KOG4505|consen  199 AGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLID---RESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGI  275 (467)
T ss_pred             cCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHHhhhhheechhHHHHHHHhhh
Confidence              22322  122333334455556666666666555443222   47888899999999999999999999999999999


Q ss_pred             hcCCCCChhhHH-HhhhhhhhHhhhhHHHHHHhhhccccccccch----hhHHHHHHHHH-HHHHHHHHHHHhHhhh--C
Q 036516          232 CLPDGPPLGTQL-VQKLDFFTSGFLLPVFCAISGIRMELYLINEK----SFIKIEFIILM-SYLGKFTGVMVPSLFF--G  303 (709)
Q Consensus       232 ~ip~~~~~~~~l-~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~----~~~~~~~ii~~-~~~~K~~~~~l~~~~~--~  303 (709)
                      +++.+.-+..+. ..++..+...++--.||.+.|..++++.++..    ..|..+++.+. .+.-|+.++++.--+.  =
T Consensus       276 ~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi~iif~RRip~v~l~kp~iPdi  355 (467)
T KOG4505|consen  276 VFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSITIIFIRRIPAVYLMKPLIPDI  355 (467)
T ss_pred             hcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHHHHHHhcccceEEEeccCCcch
Confidence            999876555433 33566666677777899999999999877643    23333333333 3334555554432221  1


Q ss_pred             CCHHHHHHHHHHhhhhhhHHHHHHHhhh
Q 036516          304 MSFLKASCLALIMCCRGIAEIAVYCMWK  331 (709)
Q Consensus       304 ~~~~~~~~lg~~m~~kG~~~l~~~~~~~  331 (709)
                      .+|||++++|. .+|.|.-++..+..+.
T Consensus       356 kswkEALFvGh-FGPIGVgAly~allar  382 (467)
T KOG4505|consen  356 KSWKEALFVGH-FGPIGVGALYYALLAR  382 (467)
T ss_pred             hhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence            57999999999 8999998888777664

>TIGR00773 NhaA Na+/H+ antiporter NhaA

Probab=99.60  E-value=1.3e-13  Score=145.48  Aligned_cols=272  Identities=13%  Similarity=0.179  Sum_probs=173.9

Q ss_pred             HHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHH
Q 036516           26 YVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAAS   98 (709)
Q Consensus        26 ~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l   98 (709)
                      ..+..+-+=|++ +|.|.+|+|++.+.+.   |+.||+   ..-++.|+++|.++=    ..+.. ..+.     ..--+
T Consensus        50 ~~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy----~~~n~-~~~~-----~~~GW  119 (373)
T TIGR00773        50 KSLLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIY----LAFNA-NDPI-----TREGW  119 (373)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHH----hheec-CCCc-----ccCcc
Confidence            456666677766 8889999999998874   444544   456677888887642    22221 1110     01111


Q ss_pred             HHHHh-hchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHH
Q 036516           99 VVVNS-MTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIF  177 (709)
Q Consensus        99 ~~~ls-~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  177 (709)
                      ++-++ -++|.+-+..+--.+ ....+-...++-|++||+.++++++++.+   ++  ....+   .......+.+    
T Consensus       120 ~IP~ATDiAFalgvlallG~~-vP~~lr~FLl~LAIvDDlgaI~vIA~FYt---~~--i~~~~---L~~a~~~~~~----  186 (373)
T TIGR00773       120 AIPAATDIAFALGVMALLGKR-VPLALKIFLLALAIIDDLGAIVIIALFYT---ND--LSMAA---LLVAAVAIAV----  186 (373)
T ss_pred             ccccHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHhheeeecC---CC--CCHHH---HHHHHHHHHH----
Confidence            22221 133333332222222 34556788899999999999998887753   11  22333   3222222211    


Q ss_pred             HHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh----hhHHHhhhhhhhHh
Q 036516          178 LVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL----GTQLVQKLDFFTSG  253 (709)
Q Consensus       178 v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~----~~~l~~kl~~~~~~  253 (709)
                            .++.+|..    +++...+.++..++. .++ ...|+|+.+|+|++|+++|+..+.    .+++++.+++++..
T Consensus       187 ------l~~~~~~~----v~~~~~y~~lgvllW-~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~  254 (373)
T TIGR00773       187 ------LAVLNRCG----VRRLGPYMLVGVILW-FAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAY  254 (373)
T ss_pred             ------HHHHHHcC----CchhhHHHHHHHHHH-HHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHH
Confidence                  12223321    234444444443333 333 799999999999999999986433    35666777777999


Q ss_pred             hhhHHH-HHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh----------CCCHHHHHHHHHHhhhhhhH
Q 036516          254 FLLPVF-CAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF----------GMSFLKASCLALIMCCRGIA  322 (709)
Q Consensus       254 ~flPlF-F~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~  322 (709)
                      +++|+| |+..|.++|...+..........+++..++||.+|++..++..          +++|++-..+|++-..--.+
T Consensus       255 lilPlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTm  334 (373)
T TIGR00773       255 LILPLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTM  334 (373)
T ss_pred             HHHHHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999 9999999987555332233466777888999999998887653          47899999999987777789


Q ss_pred             HHHHHHhhhc
Q 036516          323 EIAVYCMWKD  332 (709)
Q Consensus       323 ~l~~~~~~~~  332 (709)
                      ++.+.+.+++
T Consensus       335 SlfI~~LAf~  344 (373)
T TIGR00773       335 SIFIASLAFG  344 (373)
T ss_pred             HHHHHHHhcC
Confidence            9999999884

These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea

Probab=99.53  E-value=9.1e-14  Score=128.32  Aligned_cols=131  Identities=17%  Similarity=0.261  Sum_probs=101.5

Q ss_pred             eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcce
Q 036516          386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHV  465 (709)
Q Consensus       386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v  465 (709)
                      |||||++++++...+++.+..+++.  .+.+++++|+++.+....+    +..  .......++.++.+.+..+.  .++
T Consensus         1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~--~g~   70 (132)
T cd01988           1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHSSP----SQL--EVNVQRARKLLRQAERIAAS--LGV   70 (132)
T ss_pred             CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCc----chh--HHHHHHHHHHHHHHHHHhhh--cCC
Confidence            6999999999999999999999954  5679999999998754322    110  11233455666666665432  457


Q ss_pred             EEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516          466 VVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL  534 (709)
Q Consensus       466 ~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl  534 (709)
                      ++++.+..+  .++.++||+.|+++++|+||||+|++++..+.      .+|+++++|++++||||+|+
T Consensus        71 ~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~------~lGs~~~~v~~~~~~pvlvv  131 (132)
T cd01988          71 PVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDR------LFGGVIDQVLESAPCDVAVV  131 (132)
T ss_pred             ceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCccce------ecCchHHHHHhcCCCCEEEe
Confidence            788777665  47999999999999999999999998765333      58999999999999999885

Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.32  E-value=2.6e-10  Score=122.56  Aligned_cols=298  Identities=13%  Similarity=0.148  Sum_probs=179.4

Q ss_pred             HHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHH
Q 036516           26 YVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAAS   98 (709)
Q Consensus        26 ~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l   98 (709)
                      ..+..+-+=|++ +|.|.+|+|+.-+.+.   ++.||+   ..-++.|+++|.++    ++.+.. ..+.      .--+
T Consensus        66 ~sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlI----Y~~~n~-~~~~------~~GW  134 (438)
T PRK14856         66 FSLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLI----YFFLNA-DTPS------QHGF  134 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHH----Hhheec-CCCc------cCcc
Confidence            355566666665 8889999999988874   344444   45667788888764    222221 1111      1122


Q ss_pred             HHHHhh-chHHHHHHHHHHhcc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHH
Q 036516           99 VVVNSM-TSLVVITGLLKELKM-LNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVI  176 (709)
Q Consensus        99 ~~~ls~-Ts~~vv~~iL~el~l-l~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  176 (709)
                      |+-+++ ++|.+-  +|.=+|- ..+.+-...++-|++||+.++++++++.+   .+  ....+   ...+..++.++  
T Consensus       135 gIPmATDIAFAlg--vLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~--i~~~~---L~~a~~~~~~l--  202 (438)
T PRK14856        135 GIPMATDIAFALG--VIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---TN--LKFAW---LLGALGVVLVL--  202 (438)
T ss_pred             ccccHHHHHHHHH--HHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CC--CcHHH---HHHHHHHHHHH--
Confidence            222221 333322  2222221 34466688999999999999999887753   11  22334   33333222211  


Q ss_pred             HHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh-----------------
Q 036516          177 FLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL-----------------  239 (709)
Q Consensus       177 ~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~-----------------  239 (709)
                              ++.+|..    ++....++++.+++..+.  ...|+|+.++..++|+++|..++.                 
T Consensus       203 --------~~ln~~~----v~~~~~Y~~~G~~lW~~~--l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~  268 (438)
T PRK14856        203 --------AVLNRLN----VRSLIPYLLLGVLLWFCV--HQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAET  268 (438)
T ss_pred             --------HHHHHcC----CccccHHHHHHHHHHHHH--HHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcc
Confidence                    1122221    233444555554443332  578999999999999999964322                 


Q ss_pred             ---------------------------hhHHHhhhhhhhHhhhhHHH-HHHhhhccccccccchhhHHHHHHHHHHHHHH
Q 036516          240 ---------------------------GTQLVQKLDFFTSGFLLPVF-CAISGIRMELYLINEKSFIKIEFIILMSYLGK  291 (709)
Q Consensus       240 ---------------------------~~~l~~kl~~~~~~~flPlF-F~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K  291 (709)
                                                 .+++++.+++++..+.+|+| |+..|..++...... .-.....+++..++||
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~-~~pv~lGI~~GLvvGK  347 (438)
T PRK14856        269 SSGALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE-VDKVLLGVILGLCLGK  347 (438)
T ss_pred             ccccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc-cCcHHHHHHHHHHhcc
Confidence                                       24577788888999999999 789999887542211 1123345666677899


Q ss_pred             HHHHHHhHhhh----------CCCHHHHHHHHHHhhhhhhHHHHHHHhhhcc--CccchhHHHHHHHHHHHHHHHHHHHH
Q 036516          292 FTGVMVPSLFF----------GMSFLKASCLALIMCCRGIAEIAVYCMWKDR--KIITNQIFAIMITNMVIITGISTTIV  359 (709)
Q Consensus       292 ~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~--~~i~~~~~~~lv~~~ll~t~i~~plv  359 (709)
                      .+|.+..++..          +++|++-+..|++-+.--.+++.+.+.+++.  .-..++.--.+.+.++++..+..-++
T Consensus       348 ~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~lsai~G~~~L  427 (438)
T PRK14856        348 PLGIFLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLISGIIGALYL  427 (438)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988876553          4789999999997777778999999999843  22223333334444445343333344


Q ss_pred             Hh
Q 036516          360 GY  361 (709)
Q Consensus       360 ~~  361 (709)
                      ++
T Consensus       428 ~~  429 (438)
T PRK14856        428 FA  429 (438)
T ss_pred             HH
Confidence            43

>PRK15005 universal stress protein F; Provisional

Probab=99.32  E-value=1.8e-11  Score=115.11  Aligned_cols=137  Identities=15%  Similarity=0.130  Sum_probs=89.1

Q ss_pred             eeEEEeccCCC--hHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhc-C
Q 036516          386 RILVCIHKEQN--VNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCY-Y  462 (709)
Q Consensus       386 riLv~v~~~~~--~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~  462 (709)
                      |||+|++.+++  ...+++.+..++.  ..+.+++++|+++................+......++..+.++++.+.. .
T Consensus         4 ~ILv~~D~s~~~~~~~a~~~a~~la~--~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (144)
T PRK15005          4 TILVPIDISDSELTQRVISHVEAEAK--IDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKL   81 (144)
T ss_pred             cEEEecCCCchhHHHHHHHHHHHHHh--ccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence            69999999998  4678888877773  34578999999985422111100000000001111222333444443322 2


Q ss_pred             cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516          463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL  534 (709)
Q Consensus       463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl  534 (709)
                      .+++++..+..+   +..+.|++.|+++++||||||.|+ .+..+.      .+||+.++|++++||||.|+
T Consensus        82 ~~~~~~~~v~~G---~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~------llGS~a~~vl~~a~cpVlvV  143 (144)
T PRK15005         82 PTDRVHVHVEEG---SPKDRILELAKKIPADMIIIASHR-PDITTY------LLGSNAAAVVRHAECSVLVV  143 (144)
T ss_pred             CCCceEEEEeCC---CHHHHHHHHHHHcCCCEEEEeCCC-CCchhe------eecchHHHHHHhCCCCEEEe
Confidence            345566665555   889999999999999999999984 333332      58999999999999999875

>PRK15456 universal stress protein UspG; Provisional

Probab=99.31  E-value=1.9e-11  Score=114.77  Aligned_cols=136  Identities=9%  Similarity=0.099  Sum_probs=91.2

Q ss_pred             ceeEEEeccCC--ChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhc-
Q 036516          385 LRILVCIHKEQ--NVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCY-  461 (709)
Q Consensus       385 ~riLv~v~~~~--~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-  461 (709)
                      -|||+|+++++  +...+++.+..++..  . .+++++|+++..... ..........+......++..+.++++.+.. 
T Consensus         3 ~~ILv~vD~S~~~~s~~al~~A~~la~~--~-~~l~llhv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (142)
T PRK15456          3 KTIIMPVDVFEMELSDKAVRHAEFLAQD--D-GVIHLLHVLPGSASL-SLHRFAADVRRFEEHLQHEAEERLQTMVSHFT   78 (142)
T ss_pred             ccEEEeccCCchhHHHHHHHHHHHHHhc--C-CeEEEEEEecCcccc-cccccccchhhHHHHHHHHHHHHHHHHHHHhC
Confidence            37999999984  889999999888743  3 489999998754211 1100000000001111122333344443221 


Q ss_pred             CcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516          462 YGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL  534 (709)
Q Consensus       462 ~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl  534 (709)
                      ..++.+++.+..+   +..++|++.|+++++||||||.|++. ..+.      .+||+.++|++++||||.|+
T Consensus        79 ~~~~~v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~------llGS~a~~v~~~a~~pVLvV  141 (142)
T PRK15456         79 IDPSRIKQHVRFG---SVRDEVNELAEELGADVVVIGSRNPS-ISTH------LLGSNASSVIRHANLPVLVV  141 (142)
T ss_pred             CCCcceEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCCC-ccce------ecCccHHHHHHcCCCCEEEe
Confidence            2456777777666   89999999999999999999999864 4332      58999999999999999875

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=99.30  E-value=5.1e-10  Score=118.58  Aligned_cols=272  Identities=14%  Similarity=0.191  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHH
Q 036516           26 YVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAAS   98 (709)
Q Consensus        26 ~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l   98 (709)
                      ..+..+.+=|++ +|.|.+|+|++-+.+.   ++.||+   +.-++.|+++|.++=    +.+....+ .     ..--+
T Consensus        57 ~sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy----~~~n~g~~-~-----~~~GW  126 (389)
T PRK09560         57 KSLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIY----AAFNYNNP-E-----TLRGW  126 (389)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHH----heeecCCC-c-----ccCcc
Confidence            456667777776 8889999999988874   344444   456777888887642    22211111 0     01112


Q ss_pred             HHHHhhchHHHHHHHHHHhc-cccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHH
Q 036516           99 VVVNSMTSLVVITGLLKELK-MLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIF  177 (709)
Q Consensus        99 ~~~ls~Ts~~vv~~iL~el~-ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  177 (709)
                      |+-++ |..+-..-+|.=+| -....+-...++-|++||+.++++++++.+   .+  ....+   ......++.++   
T Consensus       127 gIPmA-TDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt---~~--i~~~~---L~~a~~~~~~l---  194 (389)
T PRK09560        127 AIPAA-TDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT---SD--LSLPA---LALAAIAIAVL---  194 (389)
T ss_pred             ccccH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CC--CCHHH---HHHHHHHHHHH---
Confidence            22221 22222222222122 134556788899999999999998887653   11  22333   33332222211   


Q ss_pred             HHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh------hhHHHhhhhhhh
Q 036516          178 LVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL------GTQLVQKLDFFT  251 (709)
Q Consensus       178 v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~------~~~l~~kl~~~~  251 (709)
                             ++.+|..    ++....+.++.+++..+.  ...|+|+.++..++|+++|..++.      .+++++++++++
T Consensus       195 -------~~ln~~~----v~~~~~Y~~~G~~lW~~~--l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v  261 (389)
T PRK09560        195 -------FLLNRLG----VTKLTPYLIVGAILWFAV--LKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWV  261 (389)
T ss_pred             -------HHHHHcC----CccchHHHHHHHHHHHHH--HHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhh
Confidence                   1122221    233445555554443333  578999999999999999974322      367899999999


Q ss_pred             HhhhhHHH-HHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh----------CCCHHHHHHHHHHhhhhh
Q 036516          252 SGFLLPVF-CAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF----------GMSFLKASCLALIMCCRG  320 (709)
Q Consensus       252 ~~~flPlF-F~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG  320 (709)
                      ..+.+|+| |+..|..++-..+....-.....+++..++||.+|.++.++..          +++|++-..+|++-+.--
T Consensus       262 ~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGF  341 (389)
T PRK09560        262 AFAILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGF  341 (389)
T ss_pred             hhhhHHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999 7889988843222211112344566667789999988876543          478999999999877778


Q ss_pred             hHHHHHHHhhhc
Q 036516          321 IAEIAVYCMWKD  332 (709)
Q Consensus       321 ~~~l~~~~~~~~  332 (709)
                      .+++.+++.++.
T Consensus       342 TmSLFIa~LAF~  353 (389)
T PRK09560        342 TMSLFIGSLAFG  353 (389)
T ss_pred             HHHHHHHHhhcC
Confidence            899999999983

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases

Probab=99.27  E-value=4.5e-11  Score=112.66  Aligned_cols=137  Identities=11%  Similarity=0.144  Sum_probs=92.8

Q ss_pred             eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccC-cccc---ccchhchhHHHHHHHHHHHhc
Q 036516          386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPH-HQQT---KSEAASSTQLINAFTQFQRCY  461 (709)
Q Consensus       386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~-~~~~---~~~~~~~~~i~~af~~~~~~~  461 (709)
                      +||||++.+++...+++.+..++..  ...+++++|+++.+... +..... ....   +......++.++.+.+..+  
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~~--~~~~l~ll~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--   75 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLAT--KGQTIVLVHVHPPITSI-PSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS--   75 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhccC--CCCcEEEEEeccCcccC-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            5899999999999999999988843  45799999998764221 100000 0000   0111222333333332221  


Q ss_pred             CcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhH-HHHHHHhhcCC--ccEEEEE
Q 036516          462 YGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIR-ALNRNVLHKAP--CSVGILV  535 (709)
Q Consensus       462 ~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~-~~~~~Vl~~ap--CsVgIlv  535 (709)
                      ..++.++.....+  .++.+.|++.|++.++|+||||.|++.+....      .+| ++.++|++++|  |||.|+.
T Consensus        76 ~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~------~~gssva~~Vi~~a~~~c~Vlvv~  144 (146)
T cd01989          76 RKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMK------FKKSDVASSVLKEAPDFCTVYVVS  144 (146)
T ss_pred             hcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeec------ccCCchhHHHHhcCCCCceEEEEe
Confidence            2456777665554  47999999999999999999999998765433      356 69999999999  9998754

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=99.27  E-value=8.7e-10  Score=116.60  Aligned_cols=272  Identities=15%  Similarity=0.238  Sum_probs=167.5

Q ss_pred             HHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHH
Q 036516           26 YVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAAS   98 (709)
Q Consensus        26 ~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l   98 (709)
                      ..+..+-+=|++ +|.|.+|+|++-+.+.   ++.||+   ..-++.|+++|.++=    +.+.. ..+.     ..--+
T Consensus        57 ~~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy----~~~n~-~~~~-----~~~GW  126 (388)
T PRK09561         57 KPLLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIY----LLFNY-ADPV-----TREGW  126 (388)
T ss_pred             CcHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHH----hheec-CCCc-----ccCcc
Confidence            346667777776 7889999999998874   344444   456677888887642    22221 1100     00111


Q ss_pred             HHHHhhchHHHHHHHHHHhc-cccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHH
Q 036516           99 VVVNSMTSLVVITGLLKELK-MLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIF  177 (709)
Q Consensus        99 ~~~ls~Ts~~vv~~iL~el~-ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  177 (709)
                      ++-++ |..+-..-++.=+| -....+-...++-|++||+.++++++++.+   ++  ..+.+   .......+.+  + 
T Consensus       127 aIP~A-TDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~--i~~~~---L~~a~~~~~~--l-  194 (388)
T PRK09561        127 AIPAA-TDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT---SD--LSMVS---LGVAAVAIAV--L-  194 (388)
T ss_pred             ccccH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CC--ccHHH---HHHHHHHHHH--H-
Confidence            21111 22222222222222 134556788899999999999999887753   11  22333   2222222111  1 


Q ss_pred             HHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh----hhHHHhhhhhhhHh
Q 036516          178 LVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL----GTQLVQKLDFFTSG  253 (709)
Q Consensus       178 v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~----~~~l~~kl~~~~~~  253 (709)
                             ++.+|..    ++....+.++.+++..+.  ...|+|+.++..+.|+++|...+.    .+++++++++++..
T Consensus       195 -------~~ln~~~----v~~~~~Y~~~G~~lW~~~--l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~  261 (388)
T PRK09561        195 -------AVLNLCG----VRRTSVYILVGVVLWVAV--LKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAF  261 (388)
T ss_pred             -------HHHHHcC----CccchHHHHHHHHHHHHH--HHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhh
Confidence                   1122221    233445555554443332  578999999999999999974221    36789999999999


Q ss_pred             hhhHHH-HHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh----------CCCHHHHHHHHHHhhhhhhH
Q 036516          254 FLLPVF-CAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF----------GMSFLKASCLALIMCCRGIA  322 (709)
Q Consensus       254 ~flPlF-F~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~  322 (709)
                      +.+|+| |+..|..++-..+....-.....+++..++||.+|.+..++..          +++|++-..+|++-..--.+
T Consensus       262 ~IlPlFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTm  341 (388)
T PRK09561        262 LILPLFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTM  341 (388)
T ss_pred             eeHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999 7888888732222211112334566667789999988876543          47899999999977777789


Q ss_pred             HHHHHHhhhc
Q 036516          323 EIAVYCMWKD  332 (709)
Q Consensus       323 ~l~~~~~~~~  332 (709)
                      ++.+.+.+++
T Consensus       342 SLFIa~LAF~  351 (388)
T PRK09561        342 SIFIASLAFG  351 (388)
T ss_pred             HHHHHHHhcC
Confidence            9999999985

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=99.26  E-value=1.5e-10  Score=126.99  Aligned_cols=319  Identities=13%  Similarity=0.089  Sum_probs=203.9

Q ss_pred             HHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHH
Q 036516           38 LHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPL-VFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKE  116 (709)
Q Consensus        38 ~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~-~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~e  116 (709)
                      -+.|..|.+++-+.++|+.......++.|..+.. ++|.++.++.. ........+..++++|+.+|.|.+..+..++.|
T Consensus       108 piif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~-~~~~~~~~f~d~L~fGaliSATDPVtvLaIfne  186 (575)
T KOG1965|consen  108 PIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF-GLLIYDLSFKDCLAFGALISATDPVTVLAIFNE  186 (575)
T ss_pred             hhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc-ccccccccHHHHHHHhhHhcccCchHHHHHHHH
Confidence            4679999999999999999999999988877664 45555544433 222233457899999999999999999999999


Q ss_pred             hccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-cc---chh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 036516          117 LKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN-LT---TIK-PLYITLVVIVYYIIVIFLVRPLTMRIVSKNS  191 (709)
Q Consensus       117 l~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~-~~---~~~-~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~  191 (709)
                      ++ ....+-.++-+.+++||.++++++..+......+.+ +.   .+. .++.+....+..+..+++.    ..+.|.+.
T Consensus       187 l~-vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~Glis----A~~lK~~~  261 (575)
T KOG1965|consen  187 LG-VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLIS----ALVLKFLY  261 (575)
T ss_pred             hC-CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence            98 466788999999999999999999877766544322 11   111 0112222222222222222    22223222


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCC-----CChhhHHHhhhhhhhHhhhhHHHHHHhhh-
Q 036516          192 EEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDG-----PPLGTQLVQKLDFFTSGFLLPVFCAISGI-  265 (709)
Q Consensus       192 ~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~-----~~~~~~l~~kl~~~~~~~flPlFF~~~G~-  265 (709)
                      -++ -...+..+.+++....++++|.+|+++++.-++.|+.+.+.     .+..+.-.+.+-.+...+---+-|.++|+ 
T Consensus       262 l~~-~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~  340 (575)
T KOG1965|consen  262 LRR-TPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLS  340 (575)
T ss_pred             hcC-CcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            211 13456778888899999999999999999999999999864     22233334444444456666778999995 


Q ss_pred             ccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhC----------CCHHHHHHHHHHhhhhhhHHHHHHHhhh-cc-
Q 036516          266 RMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFG----------MSFLKASCLALIMCCRGIAEIAVYCMWK-DR-  333 (709)
Q Consensus       266 ~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~----------~~~~~~~~lg~~m~~kG~~~l~~~~~~~-~~-  333 (709)
                      -++...........+....++.+++|..-.+-.+.+.+          .|.++-..+.|.=.-||.++++++.--. +. 
T Consensus       341 ~f~~~k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~  420 (575)
T KOG1965|consen  341 AFDFQKHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSP  420 (575)
T ss_pred             HhcccceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccc
Confidence            33443333222233445555666777766555554443          3444455555544479999988764321 11 


Q ss_pred             ----CccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 036516          334 ----KIITNQIFAIMITNMVIITGISTTIVGYLY  363 (709)
Q Consensus       334 ----~~i~~~~~~~lv~~~ll~t~i~~plv~~ly  363 (709)
                          +.+-..+..++++.+++....+.|+++++.
T Consensus       421 ~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~  454 (575)
T KOG1965|consen  421 HTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLM  454 (575)
T ss_pred             cccccEEEEeeeeeeeeeeeeeCCccHHHHHHhc
Confidence                222223333444444444556889999876

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.23  E-value=3.2e-09  Score=111.97  Aligned_cols=273  Identities=16%  Similarity=0.183  Sum_probs=167.2

Q ss_pred             HHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHH
Q 036516           26 YVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAAS   98 (709)
Q Consensus        26 ~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l   98 (709)
                      ..++...+=|++ +|.|.+|+|++-+.+.   ++.||+   ..-++.|+++|.++=..    +... + .     ..--+
T Consensus        54 ~~l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~----~n~~-~-~-----~~~GW  122 (383)
T PRK14854         54 KNLMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLS----INHD-I-K-----VINGW  122 (383)
T ss_pred             CcHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHh----hccC-C-c-----ccCcc
Confidence            356667777776 7889999999988774   344444   45677788888765222    2111 1 0     01112


Q ss_pred             HHHHh-hchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHH
Q 036516           99 VVVNS-MTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIF  177 (709)
Q Consensus        99 ~~~ls-~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  177 (709)
                      |+-++ -++|.+-+..+--.+ ....+--..++-|++||+.++++++++.+   ++  ..+.+   .......+.+  ++
T Consensus       123 ~IP~ATDIAFAlgvLallG~r-vP~~lrvFLlaLAIvDDlgAI~VIAlFYt---~~--i~~~~---L~~A~~~~~~--l~  191 (383)
T PRK14854        123 AIPSATDIAFTLGILALLGTR-VPAKLKLLVITIAIFDDIAAIAIIAIFYT---KS--LSLLS---LSLGTLFILA--MI  191 (383)
T ss_pred             ccccHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhhhHhheeeecC---CC--ccHHH---HHHHHHHHHH--HH
Confidence            22221 133333332222222 34556677888899999999998887653   11  22222   2222211111  11


Q ss_pred             HHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh----hhHHHhhhhhhhHh
Q 036516          178 LVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL----GTQLVQKLDFFTSG  253 (709)
Q Consensus       178 v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~----~~~l~~kl~~~~~~  253 (709)
                      +    ++|   +.    .++....+.++.+++..+  ....|+|+.++..+.|+++|...+.    .+++++++++++..
T Consensus       192 ~----~nr---~~----~v~~~~~Y~~~G~~lW~~--~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~  258 (383)
T PRK14854        192 I----CNR---IF----KINRSSVYVVLGFFAWFC--TIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIY  258 (383)
T ss_pred             H----HHH---hc----CCceehHHHHHHHHHHHH--HHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHH
Confidence            1    222   11    123344445544433322  3578999999999999999974211    36788999999999


Q ss_pred             hhhHHH-HHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh----------CCCHHHHHHHHHHhhhhhhH
Q 036516          254 FLLPVF-CAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF----------GMSFLKASCLALIMCCRGIA  322 (709)
Q Consensus       254 ~flPlF-F~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~  322 (709)
                      +.+|+| |+..|..++-..+....-.....+++..++||.+|.+..++..          +++|++-..+|++-..--.+
T Consensus       259 ~IlPlFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTm  338 (383)
T PRK14854        259 FILPVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTM  338 (383)
T ss_pred             hhHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999 7889988842222211112344566667789999988776543          47899999999987777889


Q ss_pred             HHHHHHhhhcc
Q 036516          323 EIAVYCMWKDR  333 (709)
Q Consensus       323 ~l~~~~~~~~~  333 (709)
                      ++.+++.+++.
T Consensus       339 SLFIa~LAF~~  349 (383)
T PRK14854        339 SLFIGVLAFND  349 (383)
T ss_pred             HHHHHHhhCCC
Confidence            99999999853

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.22  E-value=3.5e-09  Score=113.47  Aligned_cols=267  Identities=14%  Similarity=0.150  Sum_probs=167.5

Q ss_pred             HHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHH
Q 036516           26 YVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAAS   98 (709)
Q Consensus        26 ~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l   98 (709)
                      ..+..+-+=|++ +|.|.+|+|++-+.+.   ++.|++   ..-++.|+++|.++=    +.+. ...+.      .--+
T Consensus        61 ~sl~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy----~~~n-~~~~~------~~GW  129 (423)
T PRK14855         61 LSLEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALY----TALN-AGGPG------ASGW  129 (423)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHH----heee-cCCCc------cCcc
Confidence            356667777776 8889999999998874   344554   456677888887642    2221 11111      1122


Q ss_pred             HHHHhh-chHHHHHHHHHHhcc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHH
Q 036516           99 VVVNSM-TSLVVITGLLKELKM-LNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVI  176 (709)
Q Consensus        99 ~~~ls~-Ts~~vv~~iL~el~l-l~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  176 (709)
                      |+-+++ ++|.+-  +|.=+|- ..+.+-...++-|++||+.++++++++.+   ++  ....+   ..++.+++.++  
T Consensus       130 gIPmATDIAFAlg--vLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~--i~~~~---L~~a~~~~~~l--  197 (423)
T PRK14855        130 GVPMATDIAFALG--VLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---SG--LNLLA---LLLAALTWALA--  197 (423)
T ss_pred             ccccHHHHHHHHH--HHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---CC--CCHHH---HHHHHHHHHHH--
Confidence            222221 333332  2222332 33456688899999999999998887753   11  22333   33332222211  


Q ss_pred             HHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCC-h----------------
Q 036516          177 FLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPP-L----------------  239 (709)
Q Consensus       177 ~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~-~----------------  239 (709)
                              ++.+|.    .++....++++.+++..+.  ...|+|+.++..+.|+++|..++ .                
T Consensus       198 --------~~ln~~----~v~~~~~Y~~~G~~lW~~~--l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~  263 (423)
T PRK14855        198 --------LLAGRL----GVTSLKIYAVLGALLWFFV--LKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRP  263 (423)
T ss_pred             --------HHHHHc----CCccccHHHHHHHHHHHHH--HHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccc
Confidence                    112221    1233444555554443332  57899999999999999997411 1                


Q ss_pred             --------------------hhHHHhhhhhhhHhhhhHHH-HHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHh
Q 036516          240 --------------------GTQLVQKLDFFTSGFLLPVF-CAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVP  298 (709)
Q Consensus       240 --------------------~~~l~~kl~~~~~~~flPlF-F~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~  298 (709)
                                          .+++++.+++++..+.+|+| |+..|..++-.. ...   ....+++..++||.+|.+..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~p---v~lGI~~GLvvGK~lGI~~~  339 (423)
T PRK14855        264 EVVGARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LGT---VSLGVFLGLLLGKPLGVVGG  339 (423)
T ss_pred             hhhhHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CCc---HHHHHHHHHHhcchHHHHHH
Confidence                                24678888899999999999 788998884333 222   23455566678999998887


Q ss_pred             Hhhh----------CCCHHHHHHHHHHhhhhhhHHHHHHHhhhcc
Q 036516          299 SLFF----------GMSFLKASCLALIMCCRGIAEIAVYCMWKDR  333 (709)
Q Consensus       299 ~~~~----------~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~  333 (709)
                      ++..          +++|++-..+|++-+.--.+++.+++.+++.
T Consensus       340 s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~  384 (423)
T PRK14855        340 AWLAVRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFAD  384 (423)
T ss_pred             HHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            6553          4789999999998777788999999999853

>PRK09982 universal stress protein UspD; Provisional

Probab=99.20  E-value=9.1e-11  Score=110.26  Aligned_cols=133  Identities=8%  Similarity=0.028  Sum_probs=87.3

Q ss_pred             eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcce
Q 036516          386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHV  465 (709)
Q Consensus       386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v  465 (709)
                      +||+|++.+++...+++.+..++  +..+.+++++|+++......+........ .......++..+.++++.+.. ...
T Consensus         5 ~ILvavD~S~~s~~al~~A~~lA--~~~~a~l~llhV~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~   80 (142)
T PRK09982          5 HIGVAISGNEEDALLVNKALELA--RHNDAHLTLIHIDDGLSELYPGIYFPATE-DILQLLKNKSDNKLYKLTKNI-QWP   80 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHH--HHhCCeEEEEEEccCcchhchhhhccchH-HHHHHHHHHHHHHHHHHHHhc-CCC
Confidence            79999999999999999998888  44568999999987542111100000000 001111122223344443222 223


Q ss_pred             EEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516          466 VVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL  534 (709)
Q Consensus       466 ~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl  534 (709)
                      .++..+..+   ++.+.||+.|++.++||||||.| +.+..       ..++ +.++|+++|+|||.|+
T Consensus        81 ~~~~~v~~G---~p~~~I~~~A~~~~aDLIVmG~~-~~~~~-------~~~~-va~~V~~~s~~pVLvv  137 (142)
T PRK09982         81 KTKLRIERG---EMPETLLEIMQKEQCDLLVCGHH-HSFIN-------RLMP-AYRGMINKMSADLLIV  137 (142)
T ss_pred             cceEEEEec---CHHHHHHHHHHHcCCCEEEEeCC-hhHHH-------HHHH-HHHHHHhcCCCCEEEe
Confidence            455555666   89999999999999999999976 43322       2354 9999999999999886

>PRK15118 universal stress global response regulator UspA; Provisional

Probab=99.17  E-value=1.8e-10  Score=108.35  Aligned_cols=134  Identities=7%  Similarity=0.067  Sum_probs=86.1

Q ss_pred             ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcc
Q 036516          385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGH  464 (709)
Q Consensus       385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~  464 (709)
                      -|||+|++.+++...+++.+..++.  ....+++++|+........+....... ........++..+.++++.+.  .+
T Consensus         4 ~~ILvavD~S~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~--~~   78 (144)
T PRK15118          4 KHILIAVDLSPESKVLVEKAVSMAR--PYNAKVSLIHVDVNYSDLYTGLIDVNL-GDMQKRISEETHHALTELSTN--AG   78 (144)
T ss_pred             eEEEEEccCChhHHHHHHHHHHHHH--hhCCEEEEEEEccChhhhhhhhhhcch-HHHHHHHHHHHHHHHHHHHHh--CC
Confidence            3799999999999999999988873  345789999984321111000000000 000111122333444554432  23


Q ss_pred             eEEE-EEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEE
Q 036516          465 VVVQ-HFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILV  535 (709)
Q Consensus       465 v~v~-~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlv  535 (709)
                      +.+. .....+   +.++.|++.|++.++||||||.|++.     .   + .+||+.++|+++|||||.|+.
T Consensus        79 ~~~~~~~~~~G---~p~~~I~~~a~~~~~DLIV~Gs~~~~-----~---~-~lgSva~~v~~~a~~pVLvv~  138 (144)
T PRK15118         79 YPITETLSGSG---DLGQVLVDAIKKYDMDLVVCGHHQDF-----W---S-KLMSSARQLINTVHVDMLIVP  138 (144)
T ss_pred             CCceEEEEEec---CHHHHHHHHHHHhCCCEEEEeCcccH-----H---H-HHHHHHHHHHhhCCCCEEEec
Confidence            4443 333344   89999999999999999999999631     1   1 268999999999999998864

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family

Probab=99.11  E-value=3.9e-10  Score=103.10  Aligned_cols=122  Identities=16%  Similarity=0.137  Sum_probs=89.3

Q ss_pred             eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcce
Q 036516          386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHV  465 (709)
Q Consensus       386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v  465 (709)
                      |||+|+++++....+++.+..++..  .+..++++|+.+-...  +           .....++.++.+.+..+.  .++
T Consensus         1 ~Ilv~vd~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~~--~-----------~~~~~~~~l~~~~~~~~~--~~~   63 (124)
T cd01987           1 RILVCISGGPNAERLIRRAARLADR--LKAPWYVVYVETPRLN--R-----------LSEAERRRLAEALRLAEE--LGA   63 (124)
T ss_pred             CEEEEECCCcchHHHHHHHHHHHHH--hCCCEEEEEEecCccc--c-----------CCHHHHHHHHHHHHHHHH--cCC
Confidence            6999999999999999999988843  4579999999863211  0           011223444444444332  223


Q ss_pred             EEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcC-CccEEEE
Q 036516          466 VVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKA-PCSVGIL  534 (709)
Q Consensus       466 ~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~a-pCsVgIl  534 (709)
                      .  ..+..+  .+..+.|++.+++.++|+|+||+|++......      .+|++.++|+++| ||||.|.
T Consensus        64 ~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~------~~Gs~~~~v~~~a~~~~v~v~  123 (124)
T cd01987          64 E--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWREL------FRGSLVDRLLRRAGNIDVHIV  123 (124)
T ss_pred             E--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHH------hcccHHHHHHHhCCCCeEEEe
Confidence            3  333344  57899999999999999999999988665433      5899999999999 9999874

The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents

Probab=99.10  E-value=2.6e-10  Score=105.16  Aligned_cols=134  Identities=14%  Similarity=0.200  Sum_probs=89.8

Q ss_pred             ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHH---HHHHhc
Q 036516          385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFT---QFQRCY  461 (709)
Q Consensus       385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~---~~~~~~  461 (709)
                      -|||+|++++++...+++.+..++  +....+++++|+++............    .......+......+   ..... 
T Consensus         3 ~~Ilv~~d~~~~~~~al~~a~~la--~~~~~~i~~l~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-   75 (140)
T PF00582_consen    3 KRILVAIDGSEESRRALRFALELA--KRSGAEITLLHVIPPPPQYSFSAAED----EESEEEAEEEEQARQAEAEEAEA-   75 (140)
T ss_dssp             SEEEEEESSSHHHHHHHHHHHHHH--HHHTCEEEEEEEEESCHCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHH--HhhCCeEEEEEeeccccccccccccc----cccccccchhhhhhhHHHHHHhh-
Confidence            389999999999999999998888  34568999999999764432110000    000000011111000   11111 


Q ss_pred             CcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516          462 YGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL  534 (709)
Q Consensus       462 ~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl  534 (709)
                      .............   +..++|++.+++.++|+||||.|++....+.      .+|++.+++++++||||.|+
T Consensus        76 ~~~~~~~~~~~~~---~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~------~~gs~~~~l~~~~~~pVlvv  139 (140)
T PF00582_consen   76 EGGIVIEVVIESG---DVADAIIEFAEEHNADLIVMGSRGRSGLERL------LFGSVAEKLLRHAPCPVLVV  139 (140)
T ss_dssp             HTTSEEEEEEEES---SHHHHHHHHHHHTTCSEEEEESSSTTSTTTS------SSHHHHHHHHHHTSSEEEEE
T ss_pred             hccceeEEEEEee---ccchhhhhccccccceeEEEeccCCCCccCC------CcCCHHHHHHHcCCCCEEEe
Confidence            1233444434444   9999999999999999999999996655443      48999999999999999886

UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH

Probab=99.09  E-value=6.8e-10  Score=117.45  Aligned_cols=276  Identities=16%  Similarity=0.224  Sum_probs=155.1

Q ss_pred             HHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHH
Q 036516           26 YVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAAS   98 (709)
Q Consensus        26 ~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l   98 (709)
                      ..+...-+=|++ +|.|.+|+|++.+.+.   ++.||+   ..-++.|+++|..+     |+......+     ...--+
T Consensus        53 ~~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalI-----yl~~n~~~~-----~~~~GW  122 (378)
T PF06965_consen   53 LSLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALI-----YLAFNAGGP-----EAAHGW  122 (378)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG--SST-----THHHHT
T ss_pred             CCHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHH-----HheeecCCC-----CcCceE
Confidence            345556666666 8889999999988774   344444   45667788888754     112121111     011222


Q ss_pred             HHHHhhchHHHHHHHHHHhcc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHH
Q 036516           99 VVVNSMTSLVVITGLLKELKM-LNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIF  177 (709)
Q Consensus        99 ~~~ls~Ts~~vv~~iL~el~l-l~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  177 (709)
                      ++-+ .|..+-...++.=+|- ....+-...++-|++||+.++++++++.+-   +  ....+   .......+. + . 
T Consensus       123 ~IP~-ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt~---~--i~~~~---L~~a~~~~~-~-l-  190 (378)
T PF06965_consen  123 AIPM-ATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYTD---G--ISLLW---LLLAAAALL-L-L-  190 (378)
T ss_dssp             SSSS----HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS----------HHH---HHHHHHHHH-H-H-
T ss_pred             Eecc-cccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeCC---C--CCHHH---HHHHHHHHH-H-H-
Confidence            2222 2222222333332321 334566889999999999999998887641   1  22223   222222111 1 1 


Q ss_pred             HHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCChh--------hHHHhhhhh
Q 036516          178 LVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLG--------TQLVQKLDF  249 (709)
Q Consensus       178 v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~~--------~~l~~kl~~  249 (709)
                             |..+|..    ++....+..+.+++.  +.....|+|+.++..+.|+++|..++.+        +++++++++
T Consensus       191 -------~~l~r~~----v~~~~~Y~~~G~~lW--~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p  257 (378)
T PF06965_consen  191 -------FVLNRLG----VRSLWPYLLLGILLW--YAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHP  257 (378)
T ss_dssp             -------HHHHHTT-------THHHHHHHHHHH--HHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHH
T ss_pred             -------HHHHHCC----CceehHHHHHHHHHH--HHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhh
Confidence                   1122221    233444444443322  2235789999999999999999865442        488999999


Q ss_pred             hhHhhhhHHH-HHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh----------CCCHHHHHHHHHHhhh
Q 036516          250 FTSGFLLPVF-CAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF----------GMSFLKASCLALIMCC  318 (709)
Q Consensus       250 ~~~~~flPlF-F~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~  318 (709)
                      +++.+.+|+| |+..|..++-..+....-.....+++..++||.+|.+..++..          +++|++-..+|++-..
T Consensus       258 ~v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGI  337 (378)
T PF06965_consen  258 WVAFVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGI  337 (378)
T ss_dssp             HHHHTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT-
T ss_pred             hhhhhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999 7899988886554322111223455566789999988776543          4678888888887777


Q ss_pred             hhhHHHHHHHhhhccCcc
Q 036516          319 RGIAEIAVYCMWKDRKII  336 (709)
Q Consensus       319 kG~~~l~~~~~~~~~~~i  336 (709)
                      --.+++.+++.+++..-.
T Consensus       338 GFTmSLFIa~LAF~~~~~  355 (378)
T PF06965_consen  338 GFTMSLFIAGLAFDDPAL  355 (378)
T ss_dssp             -HHHHHHHHHHHSTT-SS
T ss_pred             HHHHHHHHHHHHcCChhh
Confidence            778999999999986433

NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.

>PRK10116 universal stress protein UspC; Provisional

Probab=99.01  E-value=2.5e-09  Score=100.25  Aligned_cols=136  Identities=7%  Similarity=0.034  Sum_probs=88.3

Q ss_pred             ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcc
Q 036516          385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGH  464 (709)
Q Consensus       385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~  464 (709)
                      -|||++++.+++...+++.+..++.  ....+++++|+++.+.....  ..............++..+.++++.+.  .+
T Consensus         4 ~~ILv~~D~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~   77 (142)
T PRK10116          4 SNILVAVAVTPESQQLLAKAVSIAR--PVNGKISLITLASDPEMYNQ--FAAPMLEDLRSVMQEETQSFLDKLIQD--AD   77 (142)
T ss_pred             ceEEEEccCCcchHHHHHHHHHHHH--HhCCEEEEEEEccCcccchh--hhHHHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence            4799999999999999999988883  34568999999865421100  000000001111122233344444332  23


Q ss_pred             eEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEe
Q 036516          465 VVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVH  536 (709)
Q Consensus       465 v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvd  536 (709)
                      ++......  ...+..+.|++.|++.++||||||.|++.+.+.        +.++.++|++++||||.|+..
T Consensus        78 ~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~--------~~s~a~~v~~~~~~pVLvv~~  139 (142)
T PRK10116         78 YPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFSR--------ASCSAKRVIASSEVDVLLVPL  139 (142)
T ss_pred             CCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHH--------HHHHHHHHHhcCCCCEEEEeC
Confidence            43322112  335899999999999999999999998754322        347899999999999998754

>PRK11175 universal stress protein UspE; Provisional

Probab=98.97  E-value=3.3e-09  Score=112.89  Aligned_cols=144  Identities=12%  Similarity=0.096  Sum_probs=91.6

Q ss_pred             cceeEEEeccCCCh-------HHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHH
Q 036516          384 SLRILVCIHKEQNV-------NPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQ  456 (709)
Q Consensus       384 e~riLv~v~~~~~~-------~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~  456 (709)
                      .-+||+|++.++..       ..+++.+..++... ....++++|+.+..........+............++..+.+++
T Consensus       152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  230 (305)
T PRK11175        152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQL-NHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKA  230 (305)
T ss_pred             CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhC-cCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHHHHH
Confidence            35899999987654       45788887776332 14689999998754321100000000000011112233344555


Q ss_pred             HHHhcCcceEE-EEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEE
Q 036516          457 FQRCYYGHVVV-QHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILV  535 (709)
Q Consensus       457 ~~~~~~~~v~v-~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlv  535 (709)
                      +.+..  +++. +..+..   .+..+.|++.|+++++||||||.|++.+..+.      .+|++.++|++++||||.++.
T Consensus       231 ~~~~~--~~~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~------llGS~a~~v~~~~~~pVLvv~  299 (305)
T PRK11175        231 LRQKF--GIDEEQTHVEE---GLPEEVIPDLAEHLDAELVILGTVGRTGLSAA------FLGNTAEHVIDHLNCDLLAIK  299 (305)
T ss_pred             HHHHh--CCChhheeecc---CCHHHHHHHHHHHhCCCEEEECCCccCCCcce------eecchHHHHHhcCCCCEEEEc
Confidence            54332  2332 222233   47889999999999999999999998776554      489999999999999999987


Q ss_pred             ecCC
Q 036516          536 HRGQ  539 (709)
Q Consensus       536 drg~  539 (709)
                      .+|+
T Consensus       300 ~~~~  303 (305)
T PRK11175        300 PDGY  303 (305)
T ss_pred             CCCC
Confidence            6654

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=98.95  E-value=3.7e-07  Score=92.96  Aligned_cols=271  Identities=15%  Similarity=0.241  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHHHH-HHHHHHhhhcChHHHH---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHH
Q 036516           25 RYVLRTFAEFGMI-LHAFVLGVQIDLGLVK---HIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAA   97 (709)
Q Consensus        25 ~~~l~~la~iGli-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~   97 (709)
                      ...+...-+=|++ +|.+.+|+|++.+.+.   ++++++   ..-++.|++.|-.+     |++.....+..     .--
T Consensus        59 ~~~l~~WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli-----y~~~n~~~p~~-----~~G  128 (390)
T COG3004          59 NKSLLLWINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI-----YLALNAGDPAT-----LEG  128 (390)
T ss_pred             cccHHHHhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH-----hheeecCChhh-----hcC
Confidence            3445556666776 6777899999998885   444444   34556677777653     22222221100     000


Q ss_pred             HHHHHhhchHHHHHHHHHHhc-cccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHH
Q 036516           98 SVVVNSMTSLVVITGLLKELK-MLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVI  176 (709)
Q Consensus        98 l~~~ls~Ts~~vv~~iL~el~-ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  176 (709)
                      + ++-+.|..+-...++.=++ ...+.+.-..++-|++||+-++++++++..   .+  ....+   ...+.+.   +..
T Consensus       129 W-aIP~ATDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~--Ls~~a---l~~a~~~---i~v  196 (390)
T COG3004         129 W-AIPMATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---TD--LSMAA---LGIAALA---IAV  196 (390)
T ss_pred             c-CcccHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---CC--ccHHH---HHHHHHH---HHH
Confidence            1 1112233333333333232 245566778899999999999998887753   11  11222   2222111   111


Q ss_pred             HHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCCh----hhHHHhhhhhhhH
Q 036516          177 FLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPL----GTQLVQKLDFFTS  252 (709)
Q Consensus       177 ~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~----~~~l~~kl~~~~~  252 (709)
                      .   -.++|+-        +.....+++...++..+.  ..-|+|..+...+.|+++|-....    -+++++.+.+.+.
T Consensus       197 L---~~lN~~~--------v~~l~~Y~~~gviLW~~v--lkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwva  263 (390)
T COG3004         197 L---AVLNRLG--------VRRLSPYLLVGVILWIAV--LKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVA  263 (390)
T ss_pred             H---HHHHHhC--------chhhhHHHHHHHHHHHHH--HHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHH
Confidence            1   1133321        122334455555554443  467999999999999999954322    4678888999999


Q ss_pred             hhhhHHH-HHHhhhccc---cccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh----------CCCHHHHHHHHHHhhh
Q 036516          253 GFLLPVF-CAISGIRME---LYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF----------GMSFLKASCLALIMCC  318 (709)
Q Consensus       253 ~~flPlF-F~~~G~~~d---~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~  318 (709)
                      .+.+|+| |...|..++   ...+.+.   ....+++..++||.+|.+..++..          +.+|++-...+++...
T Consensus       264 f~IlPlFaFaNAGvsl~g~~~~~l~s~---l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGI  340 (390)
T COG3004         264 FFILPLFAFANAGVSLQGVSLSGLTSP---LTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGI  340 (390)
T ss_pred             HHHHHHHHHccCCcccccccccccccc---hHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhh
Confidence            9999999 788888776   3333332   345566677889999988877653          5789999999987777


Q ss_pred             hhhHHHHHHHhhhcc
Q 036516          319 RGIAEIAVYCMWKDR  333 (709)
Q Consensus       319 kG~~~l~~~~~~~~~  333 (709)
                      .-.+++.+.+.+++.
T Consensus       341 GFTMSlFI~~LAf~~  355 (390)
T COG3004         341 GFTMSLFIASLAFGS  355 (390)
T ss_pred             hHHHHHHHHHHhcCC
Confidence            778899999888865

>cd00293 USP_Like Usp: Universal stress protein family

Probab=98.89  E-value=1.6e-08  Score=92.08  Aligned_cols=129  Identities=16%  Similarity=0.188  Sum_probs=91.2

Q ss_pred             eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcce
Q 036516          386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHV  465 (709)
Q Consensus       386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v  465 (709)
                      +||+|+++++....+++.+..++..  .+.+++++|+.+..+....     +.. +......++.++.+....+  ..++
T Consensus         1 ~ilv~i~~~~~~~~~l~~a~~~a~~--~~~~i~~l~v~~~~~~~~~-----~~~-~~~~~~~~~~l~~~~~~~~--~~~~   70 (130)
T cd00293           1 RILVAVDGSEESERALRWAARLARR--LGAELVLLHVVDPPPSSAA-----ELA-ELLEEEARALLEALREALA--EAGV   70 (130)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCCCCcch-----hHH-HHHHHHHHHHHHHHHHHHh--cCCC
Confidence            6899999999999999999999844  4589999999875543221     000 0112223333444333221  2457


Q ss_pred             EEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEE
Q 036516          466 VVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGI  533 (709)
Q Consensus       466 ~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgI  533 (709)
                      +++.....+   +..++|++.+++.++|++|+|++++....+.      .+++..+++++++||||.+
T Consensus        71 ~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~------~~~~~~~~ll~~~~~pvli  129 (130)
T cd00293          71 KVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLRRL------LLGSVAERVLRHAPCPVLV  129 (130)
T ss_pred             ceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCcccee------eeccHHHHHHhCCCCCEEe
Confidence            776665555   4489999999999999999999887543322      4889999999999999976

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]

Probab=98.60  E-value=6.5e-07  Score=84.27  Aligned_cols=138  Identities=13%  Similarity=0.186  Sum_probs=92.8

Q ss_pred             ceeEEEec-cCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCcccc-----ccchhchhHHHHHHHHHH
Q 036516          385 LRILVCIH-KEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQT-----KSEAASSTQLINAFTQFQ  458 (709)
Q Consensus       385 ~riLv~v~-~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~-----~~~~~~~~~i~~af~~~~  458 (709)
                      -+||++++ .++......+.+...+...  ...++++++++................     .......++..+..++..
T Consensus         6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (154)
T COG0589           6 KKILVAVDVGSEAAEKALEEAVALAKRL--GAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA   83 (154)
T ss_pred             ceEEEEeCCCCHHHHHHHHHHHHHHHhc--CCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            58999999 9999999888888877443  356667888876543322211110000     011223344555555544


Q ss_pred             HhcCcceE-EEEEEEEccCCCh-hHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEE
Q 036516          459 RCYYGHVV-VQHFTTIAPYATM-HDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILV  535 (709)
Q Consensus       459 ~~~~~~v~-v~~~~~vs~~~~~-~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlv  535 (709)
                      +.  .++. ++......   +. .+.|++.|.+.++|+|+||.+++++.++.      .+|++.++|++++||||.++.
T Consensus        84 ~~--~~~~~~~~~~~~g---~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~------llGsvs~~v~~~~~~pVlvv~  151 (154)
T COG0589          84 EA--AGVPVVETEVVEG---SPSAEEILELAEEEDADLIVVGSRGRSGLSRL------LLGSVAEKVLRHAPCPVLVVR  151 (154)
T ss_pred             HH--cCCCeeEEEEecC---CCcHHHHHHHHHHhCCCEEEECCCCCccccce------eeehhHHHHHhcCCCCEEEEc
Confidence            32  2333 34444444   55 69999999999999999999988876653      599999999999999998764

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea

Probab=98.29  E-value=1.1e-05  Score=74.13  Aligned_cols=129  Identities=15%  Similarity=0.164  Sum_probs=77.9

Q ss_pred             EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEeecCh
Q 036516          554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKDG  633 (709)
Q Consensus       554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v~~g  633 (709)
                      ||+++.-|.++.+.++++|.+||+.++++++++|+.++.........+.+++..++.++++........+........+|
T Consensus         1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   80 (132)
T cd01988           1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHTIIRIDH   80 (132)
T ss_pred             CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEEEEEecC
Confidence            47888888999999999999999999999999999873221000001111222334444444322111111122222222


Q ss_pred             ---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516          634 ---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ  695 (709)
Q Consensus       634 ---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq  695 (709)
                         +++.+.+++  .++||+++|.++...         | ...-+|..-+-+... .+|+||||+
T Consensus        81 ~~~~~I~~~a~~--~~~dlIV~G~~~~~~---------~-~~~~lGs~~~~v~~~-~~~pvlvv~  132 (132)
T cd01988          81 DIASGILRTAKE--RQADLIIMGWHGSTS---------L-RDRLFGGVIDQVLES-APCDVAVVK  132 (132)
T ss_pred             CHHHHHHHHHHh--cCCCEEEEecCCCCC---------c-cceecCchHHHHHhc-CCCCEEEeC
Confidence               345555553  379999999997531         2 234588888888764 567999985

Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases

Probab=98.26  E-value=1.1e-05  Score=75.70  Aligned_cols=129  Identities=9%  Similarity=0.143  Sum_probs=78.9

Q ss_pred             EEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCC---------CCchhHHHHHHHHHhhhcCCCcEEE
Q 036516          555 IVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEM---------PDDHELDNQAFDEFKDSMVGNKIIF  625 (709)
Q Consensus       555 V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~---------~~~~~~d~~~l~~~~~~~~~~~v~y  625 (709)
                      |++++-|++..+.|+++|.++|+.++.+++++|+.++.........         +..++..++.++++........+.+
T Consensus         2 ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   81 (146)
T cd01989           2 VAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSRKGVQC   81 (146)
T ss_pred             EEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeE
Confidence            7788889999999999999999999999999999873221110000         0011223345555543321112333


Q ss_pred             EEEeecC---hhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccc-hhhhhhhcCCCC--cceEEEee
Q 036516          626 REEIVKD---GIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELG-ILGDTLVNSNDE--FSVLVVQQ  696 (709)
Q Consensus       626 ~e~~v~~---g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG-~igd~las~d~~--~SvLvvqq  696 (709)
                      ....++.   .+++++..++.  +.||+++|+|+..      |+..+    -+| .+.+.+.-. .+  |+|||||.
T Consensus        82 ~~~~~~g~~~~~~I~~~a~~~--~~dlIV~Gs~g~~------~l~~~----~~gssva~~Vi~~-a~~~c~Vlvv~~  145 (146)
T cd01989          82 EDVVLEDDDVAKAIVEYVADH--GITKLVMGASSDN------HFSMK----FKKSDVASSVLKE-APDFCTVYVVSK  145 (146)
T ss_pred             EEEEEeCCcHHHHHHHHHHHc--CCCEEEEeccCCC------ceeec----ccCCchhHHHHhc-CCCCceEEEEeC
Confidence            3344432   23344444443  6899999998752      22221    355 688888765 44  69999985

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents

Probab=97.96  E-value=3.9e-05  Score=70.22  Aligned_cols=128  Identities=18%  Similarity=0.240  Sum_probs=77.4

Q ss_pred             eEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHH---------hhhcCCCcE
Q 036516          553 YHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEF---------KDSMVGNKI  623 (709)
Q Consensus       553 ~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~---------~~~~~~~~v  623 (709)
                      +||++++-|++++++|+++|.++|+.++++++++|+.++....+. ....+........++.         ..... ...
T Consensus         3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   80 (140)
T PF00582_consen    3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSF-SAAEDEESEEEAEEEEQARQAEAEEAEAEG-GIV   80 (140)
T ss_dssp             SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSE
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccccccc-ccccccccccccchhhhhhhHHHHHHhhhc-cce
Confidence            579999999999999999999999999999999999983221000 0000000000000000         01111 122


Q ss_pred             EEEEEeecC-hhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516          624 IFREEIVKD-GIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ  695 (709)
Q Consensus       624 ~y~e~~v~~-g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq  695 (709)
                      .+......+ +.++.+.+++  .++||+++|+++..         .|.+ --+|.+.+-++.. .+|+||||.
T Consensus        81 ~~~~~~~~~~~~~i~~~~~~--~~~dliv~G~~~~~---------~~~~-~~~gs~~~~l~~~-~~~pVlvv~  140 (140)
T PF00582_consen   81 IEVVIESGDVADAIIEFAEE--HNADLIVMGSRGRS---------GLER-LLFGSVAEKLLRH-APCPVLVVP  140 (140)
T ss_dssp             EEEEEEESSHHHHHHHHHHH--TTCSEEEEESSSTT---------STTT-SSSHHHHHHHHHH-TSSEEEEEE
T ss_pred             eEEEEEeeccchhhhhcccc--ccceeEEEeccCCC---------CccC-CCcCCHHHHHHHc-CCCCEEEeC
Confidence            222333333 3445555554  48999999999832         2222 2389999988874 677999973

UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=97.91  E-value=0.0019  Score=66.88  Aligned_cols=122  Identities=19%  Similarity=0.222  Sum_probs=78.8

Q ss_pred             CcEEEcccccccccccCccCCCCcH------HHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHH
Q 036516            1 GGALMGPSLLREIPYLDGLFPMGSR------YVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFG   74 (709)
Q Consensus         1 aGiilGPs~Lg~~~~~~~~fp~~~~------~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g   74 (709)
                      +|+.+=|.++|-+  .++++|.--.      ..+-+=+.-=+-.++|-.|-++|++...+..||...+-+.-+++..++|
T Consensus        12 GG~mvVPLllgal--inTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lg   89 (314)
T PF03812_consen   12 GGMMVVPLLLGAL--INTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLG   89 (314)
T ss_pred             CceeHHHHHHHHH--HHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHH
Confidence            5777888887765  3445554211      1111111112346788899999999999999999988888888888888


Q ss_pred             HHHHHHHhhhccCCc-hhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhH
Q 036516           75 LSSFRIVQRISHLDD-ETASSIAASVVVNSMTSLVVITGLLKELKMLNSELG  125 (709)
Q Consensus        75 ~~~~~~l~~~~~~~~-~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G  125 (709)
                      .+++.+++...-..+ ....+.+.+-.+++.+.-..=..+..|++- ++|.|
T Consensus        90 l~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd-~~D~g  140 (314)
T PF03812_consen   90 LLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGD-EEDVG  140 (314)
T ss_pred             HHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCC-HHHhH
Confidence            888877765311000 123556666677777776776777777773 34444

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=97.89  E-value=0.0025  Score=66.34  Aligned_cols=287  Identities=15%  Similarity=0.151  Sum_probs=154.9

Q ss_pred             CcEEEcccccccccccCccCCCCcH---HHHHHH--HHH-HHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHH
Q 036516            1 GGALMGPSLLREIPYLDGLFPMGSR---YVLRTF--AEF-GMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFG   74 (709)
Q Consensus         1 aGiilGPs~Lg~~~~~~~~fp~~~~---~~l~~l--a~i-Gli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g   74 (709)
                      +|+.+=|.++|-.  .+++||.--.   -+-..+  +.. =+..++|-.|-++|++...+..||...+-+.-+.++.++|
T Consensus        12 gg~m~vPl~lga~--inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g   89 (312)
T PRK12460         12 GGMMVVPLLIGAL--INTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIG   89 (312)
T ss_pred             CceeHHHHHHHHH--HHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHH
Confidence            4666777777764  3455554210   011111  111 1336788899999999999998998888788888888888


Q ss_pred             HHHHHHHhhhccCCchhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 036516           75 LSSFRIVQRISHLDDETASSIAASVVVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQD  154 (709)
Q Consensus        75 ~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~  154 (709)
                      ..++.+++..    +....+.+.+-.+++.|.-..=..+..|+|- ++|.|-..+.  .++|.                 
T Consensus        90 ~~~~~~~g~~----g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~-~~d~gA~~~~--sl~~G-----------------  145 (312)
T PRK12460         90 LLVGKFFGAE----GIFGLSGLAIVAAMSNSNGGLYAALMGEFGD-ERDVGAISIL--SLNDG-----------------  145 (312)
T ss_pred             HHHHHHcCcc----cccchHHHHHHHHHhcCcHHHHHHHHHHcCC-HhhhhHHhhh--hhccC-----------------
Confidence            8887777642    2223556666677777776666777778773 4444422111  11111                 


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcC
Q 036516          155 NLTTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLP  234 (709)
Q Consensus       155 ~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip  234 (709)
                         .+.   .++..   ..          .++.+ .|       ..   .+               -+.+=|++.|+++.
T Consensus       146 ---Pf~---tm~aL---ga----------~gLA~-ip-------~~---~l---------------v~lilpILiGmilG  180 (312)
T PRK12460        146 ---PFF---TMLAL---GA----------AGLAN-IP-------IM---AL---------------VAALLPLVLGMILG  180 (312)
T ss_pred             ---cHH---HHHHH---HH----------HHHhc-CC-------hH---HH---------------HHHHHHHHHHHHHh
Confidence               111   22111   10          01111 00       00   00               01233556777777


Q ss_pred             CCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHH-
Q 036516          235 DGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLA-  313 (709)
Q Consensus       235 ~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg-  313 (709)
                      +..+   .+.+.+++= ..+.+|+|-+..|.++|++.+.+..+..+ ++.++.++.-++.++...|++|.+.+-+..+| 
T Consensus       181 Nld~---~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~G~~GI-lL~v~vv~~t~~~~~~i~rllg~~~~~g~li~s  255 (312)
T PRK12460        181 NLDP---DMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQAGLAGI-LLGVLVTIVTGFFNIFADRLVGGTGIAGAAASS  255 (312)
T ss_pred             ccch---hhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHHhChHHH-HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            6432   223333332 34589999999999999988865534322 22223333445556666688898988877777 


Q ss_pred             -HHhhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHH-HHhhcCcc
Q 036516          314 -LIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVIITGISTTI-VGYLYDPS  366 (709)
Q Consensus       314 -~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~pl-v~~ly~p~  366 (709)
                       ..-+.=|-..++...--+  +-. .+.-++.+.++++.|.+..|+ ..+.+|+.
T Consensus       256 tAGnAIcgpAAVaAadP~~--~~~-~~~Ataqvaa~vivTail~P~~t~~~~k~~  307 (312)
T PRK12460        256 TAGNAVATPLAIAAADPSL--APV-AAAATAQVAASVIVTAILTPLLTSWVAKKE  307 (312)
T ss_pred             HhhHHHHHHHHHHHhchhH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             433333333222221111  111 234444455555555555555 56656443

>PRK15005 universal stress protein F; Provisional

Probab=97.87  E-value=0.00015  Score=67.88  Aligned_cols=129  Identities=15%  Similarity=0.117  Sum_probs=75.4

Q ss_pred             eEEEEeeccCcC--hHHHHHHHHHHhcCCCeEEEEEEeeecCCCC----CCCCCCC-----chhHHHHHHHHHhhhcCCC
Q 036516          553 YHIVMLFIGGAD--DREALAYSRRMAEHPNTSLTVVWFITTDQNR----PSTEMPD-----DHELDNQAFDEFKDSMVGN  621 (709)
Q Consensus       553 ~~V~~~f~Gg~d--dreAl~~a~rma~~~~~~ltvl~v~~~~~~~----~~~~~~~-----~~~~d~~~l~~~~~~~~~~  621 (709)
                      ++|+++.-|+++  .+.|+++|.++|+..+++++++|++++....    .....+.     .++.-++.++++..+....
T Consensus         3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (144)
T PRK15005          3 RTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKLP   82 (144)
T ss_pred             ccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            468899887777  4799999999999999999999998731110    0000010     0111223444444332211


Q ss_pred             cEEEEEEeecChhhHHHHHHhhh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516          622 KIIFREEIVKDGIGTTQVIQAFA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ  695 (709)
Q Consensus       622 ~v~y~e~~v~~g~~~~~~i~~~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq  695 (709)
                      .+.+. ..+..|... +.|.+.+  .++|||++|++++       |+.+|    =+|...+-+... .+|+||||.
T Consensus        83 ~~~~~-~~v~~G~p~-~~I~~~a~~~~~DLIV~Gs~~~-------~~~~~----llGS~a~~vl~~-a~cpVlvVr  144 (144)
T PRK15005         83 TDRVH-VHVEEGSPK-DRILELAKKIPADMIIIASHRP-------DITTY----LLGSNAAAVVRH-AECSVLVVR  144 (144)
T ss_pred             CCceE-EEEeCCCHH-HHHHHHHHHcCCCEEEEeCCCC-------Cchhe----eecchHHHHHHh-CCCCEEEeC
Confidence            22222 333344322 3332232  4899999998732       22232    378888888775 667999984

>PRK15118 universal stress global response regulator UspA; Provisional

Probab=97.87  E-value=7.1e-05  Score=70.13  Aligned_cols=128  Identities=16%  Similarity=0.201  Sum_probs=74.8

Q ss_pred             ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCC-CC--CC--CCCchh---HHHHHHHHHhhhcCCCcE
Q 036516          552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNR-PS--TE--MPDDHE---LDNQAFDEFKDSMVGNKI  623 (709)
Q Consensus       552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~-~~--~~--~~~~~~---~d~~~l~~~~~~~~~~~v  623 (709)
                      .+||+++.-|.++++.|+++|..+|+.++++++++++..+.... ..  ..  ++.+++   .-.+.++++....   .+
T Consensus         3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~   79 (144)
T PRK15118          3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA---GY   79 (144)
T ss_pred             ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC---CC
Confidence            35799999999999999999999999999999999985321100 00  00  001111   1112233333222   11


Q ss_pred             EEEEEeecCh---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEeecC
Q 036516          624 IFREEIVKDG---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQP  698 (709)
Q Consensus       624 ~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq~~  698 (709)
                      ...+..+..|   +++.+.+++  .++|||++|+|++       +   |.   .+|-..+-+... .+|+||||....
T Consensus        80 ~~~~~~~~~G~p~~~I~~~a~~--~~~DLIV~Gs~~~-------~---~~---~lgSva~~v~~~-a~~pVLvv~~~~  141 (144)
T PRK15118         80 PITETLSGSGDLGQVLVDAIKK--YDMDLVVCGHHQD-------F---WS---KLMSSARQLINT-VHVDMLIVPLRD  141 (144)
T ss_pred             CceEEEEEecCHHHHHHHHHHH--hCCCEEEEeCccc-------H---HH---HHHHHHHHHHhh-CCCCEEEecCCc
Confidence            1223333333   334444444  4899999999952       1   11   156666666553 556999998643

>PRK10116 universal stress protein UspC; Provisional

Probab=97.79  E-value=9.5e-05  Score=69.01  Aligned_cols=128  Identities=15%  Similarity=0.208  Sum_probs=72.5

Q ss_pred             ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCC-CCCCCCC---CCc---hhHHHHHHHHHhhhcCCCcEE
Q 036516          552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ-NRPSTEM---PDD---HELDNQAFDEFKDSMVGNKII  624 (709)
Q Consensus       552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~-~~~~~~~---~~~---~~~d~~~l~~~~~~~~~~~v~  624 (709)
                      .++|+++.-+.++...|+++|.++|+..++++|++++.++.. .......   +.+   ++.-++++++...+.   .+.
T Consensus         3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~   79 (142)
T PRK10116          3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA---DYP   79 (142)
T ss_pred             CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC
Confidence            357999988899999999999999999999999999975211 0000000   000   111123344443322   111


Q ss_pred             EEEEeecChhhHHHHHHhh-hcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516          625 FREEIVKDGIGTTQVIQAF-AETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ  695 (709)
Q Consensus       625 y~e~~v~~g~~~~~~i~~~-~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq  695 (709)
                      .....+..|..-..+++.. ..++||+|+|+++..      +++.|      +...+-++.. ..|+||||-
T Consensus        80 ~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~------~~~~~------~s~a~~v~~~-~~~pVLvv~  138 (142)
T PRK10116         80 IEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHS------FFSRA------SCSAKRVIAS-SEVDVLLVP  138 (142)
T ss_pred             eEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcch------HHHHH------HHHHHHHHhc-CCCCEEEEe
Confidence            2233444443333333332 238999999998742      12222      2234555443 456999984

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=97.77  E-value=0.00013  Score=80.76  Aligned_cols=317  Identities=12%  Similarity=0.117  Sum_probs=186.5

Q ss_pred             HHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--hhccCCchhhHHHHHHHHHHhhchHHHHHHHHHH
Q 036516           39 HAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQ--RISHLDDETASSIAASVVVNSMTSLVVITGLLKE  116 (709)
Q Consensus        39 ~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~--~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~e  116 (709)
                      ++|-+|.-|.-+.+..+....+..|+.|.+.-.+.-.+.-|.+.  +.+..+ ......++.|...|...+..+..+.+|
T Consensus       109 IvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~-~glld~LlFgSLIsAVDPVAVLaVFEE  187 (670)
T KOG1966|consen  109 IVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMS-IGLLDILLFGSLISAVDPVAVLAVFEE  187 (670)
T ss_pred             HHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhcCchhhhhhhhh
Confidence            34567888888888888888888888888775443222222222  222212 234677888999999998888889999


Q ss_pred             hccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 036516          117 LKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN----LTTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSE  192 (709)
Q Consensus       117 l~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~  192 (709)
                      .. .|.-+=-++.+.+++||.+.+++.-++.+...-++.    .....-...+..+.+..++++.+...+.....|.+.+
T Consensus       188 ih-VNe~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~  266 (670)
T KOG1966|consen  188 IH-VNEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH  266 (670)
T ss_pred             hc-cccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc
Confidence            88 466666778889999999999999777665543211    0000000011111111122222222223333343322


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCC-----CChhhHHHhhhhhhhHhhhhHHHHHHhhhcc
Q 036516          193 EESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDG-----PPLGTQLVQKLDFFTSGFLLPVFCAISGIRM  267 (709)
Q Consensus       193 ~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~-----~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~  267 (709)
                         ++-...++++.+...++..+|.++++++++-.+.|+++...     ......-++.+-...+..--++-|++.|..+
T Consensus       267 ---vrviePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~  343 (670)
T KOG1966|consen  267 ---VRVLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVST  343 (670)
T ss_pred             ---eeeecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhh
Confidence               23344568888899999999999999999999999999853     1112222333333345555677788888766


Q ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh------CCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCcc-chhH
Q 036516          268 ELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF------GMSFLKASCLALIMCCRGIAEIAVYCMWKDRKII-TNQI  340 (709)
Q Consensus       268 d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~------~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i-~~~~  340 (709)
                      -=. -...++.++.+-++.+.+-|.+++...+++.      +++..|-+.++.+ +-||.+...+... .+...+ ..+.
T Consensus       344 v~~-~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~l-id~~~vp~K~~  420 (670)
T KOG1966|consen  344 VSS-NHHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVL-IDGAKVPAKNM  420 (670)
T ss_pred             cCC-cceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEE-eccccCCcccc
Confidence            322 1111455555666667777999988877765      3667777665542 4566654433211 221122 2222


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHhhc
Q 036516          341 -----FAIMITNMVIITGISTTIVGYLY  363 (709)
Q Consensus       341 -----~~~lv~~~ll~t~i~~plv~~ly  363 (709)
                           ..++.+.+.+-.+..-|+++++-
T Consensus       421 Fvttti~VIfFTVflQGiTIkplvk~L~  448 (670)
T KOG1966|consen  421 FVTTTIAVIFFTVFLQGITIKPLVKFLK  448 (670)
T ss_pred             eEeeeeEEEeeeeeecccchHHHHHHHc
Confidence                 22333334444444678888865

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family

Probab=97.77  E-value=0.00013  Score=66.39  Aligned_cols=120  Identities=18%  Similarity=0.239  Sum_probs=73.9

Q ss_pred             EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEeecC-
Q 036516          554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIVKD-  632 (709)
Q Consensus       554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v~~-  632 (709)
                      ||+++.-|++.+++|+++|.++|++.+++++++++.+++..     . . .+..++.+++++.......+.+.  .+.+ 
T Consensus         1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~-----~-~-~~~~~~~l~~~~~~~~~~~~~~~--~~~~~   71 (124)
T cd01987           1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLN-----R-L-SEAERRRLAEALRLAEELGAEVV--TLPGD   71 (124)
T ss_pred             CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccc-----c-C-CHHHHHHHHHHHHHHHHcCCEEE--EEeCC
Confidence            47888889999999999999999999999999999874321     0 1 11123344444432211122221  2222 


Q ss_pred             --hhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEE
Q 036516          633 --GIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVV  694 (709)
Q Consensus       633 --g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv  694 (709)
                        .+.+.+++++  .+.|++++|.++..  .       |.. --+|-..+-+.-.--++.|||+
T Consensus        72 ~~~~~I~~~~~~--~~~dllviG~~~~~--~-------~~~-~~~Gs~~~~v~~~a~~~~v~v~  123 (124)
T cd01987          72 DVAEAIVEFARE--HNVTQIVVGKSRRS--R-------WRE-LFRGSLVDRLLRRAGNIDVHIV  123 (124)
T ss_pred             cHHHHHHHHHHH--cCCCEEEeCCCCCc--h-------HHH-HhcccHHHHHHHhCCCCeEEEe
Confidence              2334555544  37999999999742  1       221 1578878777765324478876

The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed

Probab=97.75  E-value=0.00011  Score=79.11  Aligned_cols=108  Identities=9%  Similarity=0.053  Sum_probs=73.5

Q ss_pred             ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHh----
Q 036516          385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRC----  460 (709)
Q Consensus       385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~----  460 (709)
                      -|||||+|.+++...+++-+..++...+...+++++|+++.....    .  ..  +......+++++..++..+.    
T Consensus         6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~----~--~~--~~~~~~~eelle~~~~~~~~~l~~   77 (357)
T PRK12652          6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVD----P--EG--QDELAAAEELLERVEVWATEDLGD   77 (357)
T ss_pred             CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccc----c--ch--hHHHHHHHHHHHHHHHHHHHhhhc
Confidence            479999999999999999998888432135799999999843211    1  00  01123334455555544322    


Q ss_pred             cCcceEEEEEEEEc-----cCCChhHHHHHHHhhcCccEEEecCC
Q 036516          461 YYGHVVVQHFTTIA-----PYATMHDDVCTLALDKRVVIIIVPFH  500 (709)
Q Consensus       461 ~~~~v~v~~~~~vs-----~~~~~~~dI~~~A~e~~~dlII~g~h  500 (709)
                      ...++++++.+...     ...++++.|++.|+|+++|+||||-.
T Consensus        78 ~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~  122 (357)
T PRK12652         78 DASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPE  122 (357)
T ss_pred             ccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCC
Confidence            12468888766552     11489999999999999999999964

>cd00293 USP_Like Usp: Universal stress protein family

Probab=97.74  E-value=0.0003  Score=63.52  Aligned_cols=128  Identities=15%  Similarity=0.202  Sum_probs=76.1

Q ss_pred             EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhc--CCCcEEEEEEeec
Q 036516          554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSM--VGNKIIFREEIVK  631 (709)
Q Consensus       554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~--~~~~v~y~e~~v~  631 (709)
                      +|+++.-+++..+.++++|.++|+..+.+++++++.++....+......+....++.++++....  .+-.+.+.-..-.
T Consensus         1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   80 (130)
T cd00293           1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGD   80 (130)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence            36778888899999999999999999999999999863321000000112233445666666542  1113322211111


Q ss_pred             ChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEE
Q 036516          632 DGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVV  694 (709)
Q Consensus       632 ~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv  694 (709)
                      ...++.+.+++  .++|++++|.++..         .|.+ --.|.+.+-|... ..++||+|
T Consensus        81 ~~~~i~~~~~~--~~~dlvvig~~~~~---------~~~~-~~~~~~~~~ll~~-~~~pvliv  130 (130)
T cd00293          81 PAEAILEAAEE--LGADLIVMGSRGRS---------GLRR-LLLGSVAERVLRH-APCPVLVV  130 (130)
T ss_pred             CHHHHHHHHHH--cCCCEEEEcCCCCC---------ccce-eeeccHHHHHHhC-CCCCEEeC
Confidence            23345555554  37999999998642         2222 2467777777754 44566654

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.

>PRK09982 universal stress protein UspD; Provisional

Probab=97.74  E-value=0.00019  Score=67.21  Aligned_cols=39  Identities=21%  Similarity=0.291  Sum_probs=36.4

Q ss_pred             ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeee
Q 036516          552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFIT  590 (709)
Q Consensus       552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~  590 (709)
                      .++|+++.-|+++.+.|+++|.++|+.++++++++|+++
T Consensus         3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~   41 (142)
T PRK09982          3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDD   41 (142)
T ss_pred             ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEcc
Confidence            357999999999999999999999999999999999986

>PRK15456 universal stress protein UspG; Provisional

Probab=97.67  E-value=0.00084  Score=62.72  Aligned_cols=128  Identities=13%  Similarity=0.141  Sum_probs=75.0

Q ss_pred             eEEEEeeccCc--ChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCC---CC--CCCc---hhHHHHHHHHHhhhcCCCc
Q 036516          553 YHIVMLFIGGA--DDREALAYSRRMAEHPNTSLTVVWFITTDQNRPS---TE--MPDD---HELDNQAFDEFKDSMVGNK  622 (709)
Q Consensus       553 ~~V~~~f~Gg~--ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~---~~--~~~~---~~~d~~~l~~~~~~~~~~~  622 (709)
                      +||+++.-|++  .++.|+++|.++|+.. .+++++|+.++......   ..  ++.+   ++.-++.++++..+.....
T Consensus         3 ~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   81 (142)
T PRK15456          3 KTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTIDP   81 (142)
T ss_pred             ccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            47889988774  7899999999999885 59999999873211000   00  0011   1222234455543321111


Q ss_pred             EEEEEEeecChhhHHHHHHhhh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516          623 IIFREEIVKDGIGTTQVIQAFA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ  695 (709)
Q Consensus       623 v~y~e~~v~~g~~~~~~i~~~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq  695 (709)
                      ..+ +..+..|. ..+.|.+.+  .+.||+++|+|++  + +    .+    .=+|-..+-++.. .+|+||||.
T Consensus        82 ~~v-~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~--~-~----~~----~llGS~a~~v~~~-a~~pVLvV~  142 (142)
T PRK15456         82 SRI-KQHVRFGS-VRDEVNELAEELGADVVVIGSRNP--S-I----ST----HLLGSNASSVIRH-ANLPVLVVR  142 (142)
T ss_pred             cce-EEEEcCCC-hHHHHHHHHhhcCCCEEEEcCCCC--C-c----cc----eecCccHHHHHHc-CCCCEEEeC
Confidence            222 23333442 233333322  4799999999863  2 1    11    2389999999876 667999984

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=97.16  E-value=0.025  Score=58.46  Aligned_cols=122  Identities=18%  Similarity=0.245  Sum_probs=73.5

Q ss_pred             CcEEEcccccccccccCccCCCCcHH----HHHHH-HHHH-HHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHH
Q 036516            1 GGALMGPSLLREIPYLDGLFPMGSRY----VLRTF-AEFG-MILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFG   74 (709)
Q Consensus         1 aGiilGPs~Lg~~~~~~~~fp~~~~~----~l~~l-a~iG-li~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g   74 (709)
                      +|+.+=|.++|-.  .+++||.--..    +-..+ +..- +..++|-.|-++|++...+..||...+-+.-++++.++|
T Consensus        12 GG~MiVPLllga~--inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g   89 (314)
T TIGR00793        12 GGMMLVPLFLGAL--CHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVA   89 (314)
T ss_pred             CceeHHHHHHHHH--HHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHH
Confidence            4666777777764  34556643111    11111 1111 336788899999999998888888877777888888888


Q ss_pred             HHHHHHHhhhccCCc-hhhHHHHHHHHHHhhchHHHHHHHHHHhccccChhH
Q 036516           75 LSSFRIVQRISHLDD-ETASSIAASVVVNSMTSLVVITGLLKELKMLNSELG  125 (709)
Q Consensus        75 ~~~~~~l~~~~~~~~-~~~~~~l~l~~~ls~Ts~~vv~~iL~el~ll~s~~G  125 (709)
                      .+++.+++...-..+ ....+.+.+-.+++.|--..=+.+..|++- ++|.|
T Consensus        90 ~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd-~~D~g  140 (314)
T TIGR00793        90 AIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGT-KEEAG  140 (314)
T ss_pred             HHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCC-Hhhhh
Confidence            888877764320000 112445555566666665555566666662 33444

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed

Probab=97.08  E-value=0.0049  Score=66.48  Aligned_cols=122  Identities=13%  Similarity=0.167  Sum_probs=71.4

Q ss_pred             ceEEEEeeccCcChHHHHHHHHHHhcCC--CeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcC-----C-CcE
Q 036516          552 LYHIVMLFIGGADDREALAYSRRMAEHP--NTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMV-----G-NKI  623 (709)
Q Consensus       552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~--~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-----~-~~v  623 (709)
                      .+||+++.-|++..+.|+++|..+|+.+  ++++|++|+++......  ..+...+..++.+++.+....     . ..+
T Consensus         5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~--~~~~~~~~~eelle~~~~~~~~~l~~~~~gV   82 (357)
T PRK12652          5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP--EGQDELAAAEELLERVEVWATEDLGDDASSV   82 (357)
T ss_pred             cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc--chhHHHHHHHHHHHHHHHHHHHhhhcccCCC
Confidence            5689999999999999999999999985  69999999987322111  111111222233333332210     0 123


Q ss_pred             EEEEEeec---------C-hhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCC
Q 036516          624 IFREEIVK---------D-GIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSND  687 (709)
Q Consensus       624 ~y~e~~v~---------~-g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~  687 (709)
                      .+...++.         + .+++++..++  +++|||+||..-...+.          .|-|-+++=-|+..+.
T Consensus        83 ~ve~~vv~~~~~~~~~G~pae~Iv~~Aee--~~aDLIVm~~~~~~~~~----------~~~~~~~~~~~~~~~~  144 (357)
T PRK12652         83 TIETALLGTDEYLFGPGDYAEVLIAYAEE--HGIDRVVLDPEYNPGGT----------APMLQPLERELARAGI  144 (357)
T ss_pred             ceEEEEEeccccccCCCCHHHHHHHHHHH--cCCCEEEECCCCCCCCC----------CcccchHHHHHHhcCC
Confidence            34444432         1 3344455554  37999999998643321          2345555555555544

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=97.04  E-value=0.45  Score=50.18  Aligned_cols=150  Identities=16%  Similarity=0.097  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHH
Q 036516           26 YVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKR---AVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVN  102 (709)
Q Consensus        26 ~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~---~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~l  102 (709)
                      ..++..-.+.+.++||..|+.+..+.+++..|+   ......+++++--.+|++++..+.    .+.+.....++++.+=
T Consensus        34 ~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~----l~~~l~~Gl~ll~~~P  109 (319)
T COG0385          34 GWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP----LPPELAVGLLLLGCCP  109 (319)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC----CCHHHHHhHHheeeCC
Confidence            344445588899999999999999999865543   333334444444445666655553    2222233334444444


Q ss_pred             hhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CC---ccchhhHHHHHHHHHHHHHHHHH
Q 036516          103 SMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQ-DN---LTTIKPLYITLVVIVYYIIVIFL  178 (709)
Q Consensus       103 s~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~-~~---~~~~~~~~~~~~~i~~~~~~~~v  178 (709)
                      +.|+. .+...+..     .+. -++++.+.++.+++.++.-+...+.-++ .+   +..++   .++..++.=.+...+
T Consensus       110 ggv~S-~~~t~lAk-----GnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~---~i~~~vllP~~LG~~  179 (319)
T COG0385         110 GGVAS-NAMTYLAK-----GNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFL---SILLQVLLPFVLGQL  179 (319)
T ss_pred             CchhH-HHHHHHhc-----CcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHH---HHHHHHHHHHHHHHH
Confidence            44444 33333333     222 5677778889999988875555544332 11   22333   444444444556667


Q ss_pred             HHHHHHHHHhh
Q 036516          179 VRPLTMRIVSK  189 (709)
Q Consensus       179 ~r~~~~~i~~~  189 (709)
                      .||......++
T Consensus       180 ~r~~~~~~~~~  190 (319)
T COG0385         180 LRPLLPKWVER  190 (319)
T ss_pred             HHHHHHHHHHH
Confidence            77777655555

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=96.73  E-value=1.3  Score=48.59  Aligned_cols=288  Identities=13%  Similarity=0.069  Sum_probs=141.0

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCchhhHHHHHHHH
Q 036516           22 MGSRYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRIS-HLDDETASSIAASVV  100 (709)
Q Consensus        22 ~~~~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~-~~~~~~~~~~l~l~~  100 (709)
                      +...+..+.+.+..+=+-+++.=++.|++.++|.++|.+.. +..-.+..++|..+++++.+.. .++  .|..    +.
T Consensus        47 p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~~~~g~viG~~va~~l~~~~l~~~--~wk~----ag  119 (378)
T PF05684_consen   47 PASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLIGAVGTVIGAVVAFLLFGGFLGPE--GWKI----AG  119 (378)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccch--HHHH----HH
Confidence            34567888888888888888888899999999999887643 3333445556666766665543 222  2222    22


Q ss_pred             HHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-ccchhhHHHHHHHHHHHHHHHHHH
Q 036516          101 VNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN-LTTIKPLYITLVVIVYYIIVIFLV  179 (709)
Q Consensus       101 ~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~v~  179 (709)
                      +++.|-..-..+...=...++.+ ..+.-+....|+++.-+.+.+...+...... ..+..+-..-...           
T Consensus       120 ~l~gsyiGGs~N~~Av~~al~~~-~~~~~a~~aaDnv~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-----------  187 (378)
T PF05684_consen  120 MLAGSYIGGSVNFVAVAEALGVS-DSLFAAALAADNVVMALWFAFLLALPPFARKFDRWTKADTSSIEA-----------  187 (378)
T ss_pred             HHHhcccCchhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhccCCCccccch-----------
Confidence            22222222212211111112222 2344444455556655555555544321000 0000000000000           


Q ss_pred             HHHHHHHHhhc--ccCCCCchhHHHHHHHHHHHHHHHHHHhchh-------------HhHHHHHHHHhcCCCCChhhHHH
Q 036516          180 RPLTMRIVSKN--SEEESMNQNHFIITICIVLVTTILGTLVGQN-------------SILTAFFFGLCLPDGPPLGTQLV  244 (709)
Q Consensus       180 r~~~~~i~~~~--~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~-------------~~lGaf~~Gl~ip~~~~~~~~l~  244 (709)
                        .-....+..  ++.++.. ......+.+.+..+.++..++-.             .++-....|++... +|..+.+ 
T Consensus       188 --~~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~-~~~~~~l-  262 (378)
T PF05684_consen  188 --LEEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALSHALAAWLPPLFAGISSSTWLILTVTTLGLATSF-PPFRKLL-  262 (378)
T ss_pred             --hhhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhc-cchhhcC-
Confidence              000000000  0011111 12223333333333222222111             22333344444433 3444443 


Q ss_pred             hhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHH
Q 036516          245 QKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEI  324 (709)
Q Consensus       245 ~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l  324 (709)
                      .--+.+ ..+++=+||+.+|++.|+..+.+..+  .+++.++.+..-.+..++.+|++|.|..+...- -.=|.-|-...
T Consensus       263 ~g~~~l-g~~lly~ffa~IGa~a~i~~l~~ap~--~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vA-S~AnIGGpaTA  338 (378)
T PF05684_consen  263 RGASEL-GTFLLYLFFAVIGASADISELLDAPS--LFLFGFIILAIHLLLMLILGKLFKIDLFELLVA-SNANIGGPATA  338 (378)
T ss_pred             CchHHH-HHHHHHHHHHHHccccCHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-hhcccCCcchH
Confidence            333444 56677789999999999988765322  223344445667788888999999999766544 44566666665


Q ss_pred             HHHHhhhccCccc
Q 036516          325 AVYCMWKDRKIIT  337 (709)
Q Consensus       325 ~~~~~~~~~~~i~  337 (709)
                      .....+++..+..
T Consensus       339 ~a~A~a~~~~Lv~  351 (378)
T PF05684_consen  339 PAVAAAKGPSLVP  351 (378)
T ss_pred             HHHHHhcCCccHH
Confidence            5555555544333

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=96.65  E-value=0.071  Score=56.81  Aligned_cols=46  Identities=15%  Similarity=0.285  Sum_probs=37.4

Q ss_pred             HHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036516           38 LHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQR   83 (709)
Q Consensus        38 ~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~   83 (709)
                      .++|..|-.+|++...+..||...+.+.-+.+..+++..++.++..
T Consensus        55 ~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g~  100 (326)
T PRK05274         55 VFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIGE  100 (326)
T ss_pred             HHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcchH
Confidence            6888999999999998888888888777777777777776666543

>PRK10490 sensor protein KdpD; Provisional

Probab=96.45  E-value=0.017  Score=70.64  Aligned_cols=123  Identities=10%  Similarity=0.053  Sum_probs=86.4

Q ss_pred             cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCc
Q 036516          384 SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYG  463 (709)
Q Consensus       384 e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  463 (709)
                      ..|||||++.+.+...+++-+..++..  .....+++|+.....+.            ......+++.+.++ ++++.  
T Consensus       250 ~eriLV~v~~~~~~~~lIr~~~rlA~~--~~a~~~~l~V~~~~~~~------------~~~~~~~~l~~~~~-lA~~l--  312 (895)
T PRK10490        250 RDAILLCIGHNTGSEKLVRTAARLAAR--LGSVWHAVYVETPRLHR------------LPEKKRRAILSALR-LAQEL--  312 (895)
T ss_pred             CCeEEEEECCCcchHHHHHHHHHHHHh--cCCCEEEEEEecCCcCc------------CCHHHHHHHHHHHH-HHHHc--
Confidence            679999999999999999999988854  45789999986432111            11223345555554 54432  


Q ss_pred             ceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCC-ccEEEEE
Q 036516          464 HVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAP-CSVGILV  535 (709)
Q Consensus       464 ~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~ap-CsVgIlv  535 (709)
                      +-.+..  ..+  +++.+.|.+.|++++++.||||-+++.+.   +     .-+|+.+++++.+| -+|-|+-
T Consensus       313 Ga~~~~--~~~--~dva~~i~~~A~~~~vt~IViG~s~~~~~---~-----~~~s~~~~l~r~~~~idi~iv~  373 (895)
T PRK10490        313 GAETAT--LSD--PAEEKAVLRYAREHNLGKIIIGRRASRRW---W-----RRESFADRLARLGPDLDLVIVA  373 (895)
T ss_pred             CCEEEE--EeC--CCHHHHHHHHHHHhCCCEEEECCCCCCCC---c-----cCCCHHHHHHHhCCCCCEEEEe
Confidence            233332  223  68999999999999999999998765421   1     13589999999996 7877764

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=96.42  E-value=1.4  Score=47.12  Aligned_cols=113  Identities=16%  Similarity=0.179  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHhhhcChHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHhhc
Q 036516           29 RTFAEFGMILHAFVLGVQIDLGLVKHIRKRA---VIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMT  105 (709)
Q Consensus        29 ~~la~iGli~~lF~~Gle~d~~~l~~~~~~~---~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~T  105 (709)
                      +....+++..++|..|+.++.+++++..++.   ...-...+++.-++++++...+....+  .+ ....+.+..++-.|
T Consensus        30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~--~~-l~~Gl~~~~~lPtT  106 (313)
T PF13593_consen   30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLP--PE-LALGLLILACLPTT  106 (313)
T ss_pred             hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCC--HH-HHHHHHHHhhCCch
Confidence            4677888888999999999999998765443   322233333333445555555543221  11 11122222222222


Q ss_pred             -hHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036516          106 -SLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVR  150 (709)
Q Consensus       106 -s~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~  150 (709)
                       +..|+..   .  ..+.+. ..++..+.++.+++.++.=+...+.
T Consensus       107 v~S~v~~T---~--~AgGN~-a~Al~~~~~snllgv~ltP~ll~l~  146 (313)
T PF13593_consen  107 VSSSVVLT---R--LAGGNV-ALALFNAVLSNLLGVFLTPLLLLLL  146 (313)
T ss_pred             hhHHHHHH---H--HcCCCH-HHHHHHHHHHhhhhHhHHHHHHHHH
Confidence             3333322   1  222222 5677778888888888875544433

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=96.37  E-value=0.11  Score=54.40  Aligned_cols=130  Identities=14%  Similarity=0.181  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHhchhHhHHHHHHHHhcCCCCChhh-HHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHH
Q 036516          207 IVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGT-QLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIIL  285 (709)
Q Consensus       207 ~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~~~-~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~  285 (709)
                      .....+.+++.++++.++|-.++|+++.... ++- .-.+.++.+ ..+-+.++....|+++|++.+... +.....+..
T Consensus         3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~~-~~~~~~~~~   79 (273)
T TIGR00932         3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWKL-RKAAFGVGV   79 (273)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHH-HHHHHHHHH
Confidence            3455678888999999999999999996421 110 011234444 456666777889999999887643 222222222


Q ss_pred             HHHHHH-HHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCccchhHH
Q 036516          286 MSYLGK-FTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIF  341 (709)
Q Consensus       286 ~~~~~K-~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~~  341 (709)
                      ..++.- ++.++..+++++.++.+++.+|..+++-..  -+++.+..|.+..+.+.-
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~--~v~~~il~~~~~~~~~~g  134 (273)
T TIGR00932        80 LQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSST--AVVVQVLKERGLLKTPFG  134 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHH--HHHHHHHHHcCcccChHH
Confidence            333333 333444567789999999999998886542  344555566666554433

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.25  E-value=0.13  Score=60.28  Aligned_cols=131  Identities=14%  Similarity=0.136  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCC-CCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHH
Q 036516          201 FIITICIVLVTTILGTLVGQNSILTAFFFGLCLPD-GPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIK  279 (709)
Q Consensus       201 ~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~-~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~  279 (709)
                      ....++...++..++..+|+++++|=.++|+++.. +..+-.. .+.++.+ ..+-+.++.+.+|+++|+..+... ...
T Consensus        10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~~-~~~   86 (621)
T PRK03562         10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD-VESILHF-AEFGVVLMLFVIGLELDPQRLWKL-RRS   86 (621)
T ss_pred             HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC-HHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHH-HHH
Confidence            34555666777788889999999999999999953 2111111 1234444 566667777889999999877543 111


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCcc
Q 036516          280 IEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKII  336 (709)
Q Consensus       280 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i  336 (709)
                      +..+-...++.-.+..+..+++++.++..++.+|..+..-.. .+ ...+-.+.+.+
T Consensus        87 ~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SSt-ai-v~~~L~e~~~l  141 (621)
T PRK03562         87 IFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSST-AI-AMQAMNERNLM  141 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-HH-HHHHHHHhccc
Confidence            111111111112233334556788999999999987754433 22 23444444443

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom

Probab=96.20  E-value=1.6  Score=47.75  Aligned_cols=283  Identities=14%  Similarity=0.119  Sum_probs=155.6

Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHHHHH----h--hhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchh
Q 036516           18 GLFPMGSRYVLRTFAEFGMILHAFVL----G--VQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDET   91 (709)
Q Consensus        18 ~~fp~~~~~~l~~la~iGli~~lF~~----G--le~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~   91 (709)
                      .++|++..+..+.+-+-+=.+.+|.+    |  +.||.+.+.|...|-+...+.+.+.-++++.+++.+++....     
T Consensus        76 ~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~-----  150 (414)
T PF03390_consen   76 GLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFK-----  150 (414)
T ss_pred             CCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----
Confidence            45676665555555433222333433    3  489999999999999888888888888888888888865431     


Q ss_pred             hHHHHHHHHHH-----hhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CC-----
Q 036516           92 ASSIAASVVVN-----SMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQ------DN-----  155 (709)
Q Consensus        92 ~~~~l~l~~~l-----s~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~------~~-----  155 (709)
                       ...+.+++-.     ..-+.|...-.=+-++.-..+.=..++.+.++.++++++.-+++--+.+..      +.     
T Consensus       151 -~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~  229 (414)
T PF03390_consen  151 -DAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGG  229 (414)
T ss_pred             -HHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCC
Confidence             2223332211     112223222112223333444555567777888888887766665543211      00     


Q ss_pred             c----------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHH
Q 036516          156 L----------TTIKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILT  225 (709)
Q Consensus       156 ~----------~~~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lG  225 (709)
                      .          ...-  +.-...-++..+.+|....++..++       .++ .+.+.++..++     ...+|+     
T Consensus       230 ~~~~~~~~~~~~~~~--~~~~g~Gllla~~~y~~G~ll~~~i-------~ih-~~a~mIi~~~i-----~K~~~l-----  289 (414)
T PF03390_consen  230 DDEEEEAKKKEKPID--FSDMGAGLLLACSFYILGVLLSKLI-------GIH-AYAWMIILVAI-----VKAFGL-----  289 (414)
T ss_pred             ccccccccccCCCCC--HHHHHHHHHHHHHHHHHHHHHHHhc-------CCc-HHHHHHHHHHH-----HHHhCc-----
Confidence            0          0000  1112222233344444444444433       111 22222221111     111111     


Q ss_pred             HHHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhc-cccccccch-hhHHHHHHHHHHHHHHHHHHHHhHhhhC
Q 036516          226 AFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIR-MELYLINEK-SFIKIEFIILMSYLGKFTGVMVPSLFFG  303 (709)
Q Consensus       226 af~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~-~d~~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~  303 (709)
                             +|+   .-++=.++...|+..-+.|-..+-+|+. +|+..+... ++. .+++++..+++-.+++++.+++.|
T Consensus       290 -------vP~---~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~-~vv~~~~~Vl~~~~~a~~vG~l~g  358 (414)
T PF03390_consen  290 -------VPE---SLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQ-YVVIVLATVLGAVIGAFLVGKLVG  358 (414)
T ss_pred             -------CCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence                   222   2333344566666666777777778888 998877654 443 345555666778889999999999


Q ss_pred             CCHHH-HHHHHHHhhhh-hhHHHHHHHhhhccCccc
Q 036516          304 MSFLK-ASCLALIMCCR-GIAEIAVYCMWKDRKIIT  337 (709)
Q Consensus       304 ~~~~~-~~~lg~~m~~k-G~~~l~~~~~~~~~~~i~  337 (709)
                      +-+-| ++.-|+.|+.+ |.-|+++.+.+.+.+++.
T Consensus       359 ~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~Lmp  394 (414)
T PF03390_consen  359 FYPVESAITAGLCMANMGGTGDVAVLSAANRMELMP  394 (414)
T ss_pred             CChHHHHHHhhhcccCCCCCCcchheehhhhccccc
Confidence            65555 56667577666 456777777777766653

They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=96.01  E-value=0.22  Score=55.07  Aligned_cols=143  Identities=13%  Similarity=0.179  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCC-CC---ChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchh
Q 036516          201 FIITICIVLVTTILGTLVGQNSILTAFFFGLCLPD-GP---PLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKS  276 (709)
Q Consensus       201 ~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~-~~---~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~  276 (709)
                      ...++..+...+.+.+.+|+++++|-.++|+++.. +.   ...++..+-+..++    .-++...+|+++|+..+....
T Consensus        11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelG----vi~LlF~~GLE~~~~~l~~~~   86 (397)
T COG0475          11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELG----VVFLLFLIGLEFDLERLKKVG   86 (397)
T ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHh----HHHHHHHHHHCcCHHHHHHhc
Confidence            45566667777799999999999999999999986 21   12233333344442    334556789999998876541


Q ss_pred             hHHHHHHHHHHHHHHHHHH--HHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCccchhHHHHHHHHHHH
Q 036516          277 FIKIEFIILMSYLGKFTGV--MVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIMITNMVI  350 (709)
Q Consensus       277 ~~~~~~ii~~~~~~K~~~~--~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~ll  350 (709)
                      .........+.+..=++.+  +... +++.++++++.+|..+..-..-  +++.+..|.|..+.+.-..++-..++
T Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~~--i~~~iL~e~~~~~~~~g~~~l~~~i~  159 (397)
T COG0475          87 RSVGLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSSTA--IVLKILMELGLLKTREGQLILGALVF  159 (397)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHH--HHHHHHHHhccccchHHHHHHHHHHH
Confidence            1102222222222222222  2223 5899999999999877655432  44555566666655554444333333

>TIGR00930 2a30 K-Cl cotransporter

Probab=95.93  E-value=6.5  Score=48.49  Aligned_cols=132  Identities=9%  Similarity=0.053  Sum_probs=80.3

Q ss_pred             Cc-cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHh
Q 036516          382 QN-SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRC  460 (709)
Q Consensus       382 ~~-e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~  460 (709)
                      .+ .-++||.+.+|++.+.+++++..+.+.+   .-..+-|+++.+.+.             ...+.++..++.+.+-+.
T Consensus       572 knwrPqiLvl~~~p~~~~~Ll~f~~~l~~~~---gl~i~~~v~~~~~~~-------------~~~~~~~~~~~~~~~~~~  635 (953)
T TIGR00930       572 KNWRPQCLVLTGPPVCRPALLDFASQFTKGK---GLMICGSVIQGPRLE-------------CVKEAQAAEAKIQTWLEK  635 (953)
T ss_pred             cccCCeEEEEeCCCcCcHHHHHHHHHhccCC---cEEEEEEEecCchhh-------------hHHHHHHHHHHHHHHHHH
Confidence            45 7899999999999999999999998332   345566888754211             111122223333333322


Q ss_pred             cCcceEEEEEEEEccCCChhHHHHHHHhhc-----CccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEE
Q 036516          461 YYGHVVVQHFTTIAPYATMHDDVCTLALDK-----RVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILV  535 (709)
Q Consensus       461 ~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~-----~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlv  535 (709)
                          -+++.|..+-..+++.+++..+.+-.     +.+.++|||...|+.+... . ...+-++.+.. -++...|.|+.
T Consensus       636 ----~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~-~-~~~y~~~i~~a-~~~~~~v~i~r  708 (953)
T TIGR00930       636 ----NKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPR-A-WETYIGIIHDA-FDAHLAVVVVR  708 (953)
T ss_pred             ----hCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccch-h-HHHHHHHHHHH-HHcCCcEEEEc
Confidence                12333333333469999999988766     5799999999988754321 1 11244444443 35666666654


Q ss_pred             e
Q 036516          536 H  536 (709)
Q Consensus       536 d  536 (709)
                      +
T Consensus       709 ~  709 (953)
T TIGR00930       709 N  709 (953)
T ss_pred             c
Confidence            3

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=95.88  E-value=3  Score=44.19  Aligned_cols=151  Identities=11%  Similarity=0.067  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHH----HHHHHHHhhhccCCchhh-HHHHHHH
Q 036516           25 RYVLRTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFG----LSSFRIVQRISHLDDETA-SSIAASV   99 (709)
Q Consensus        25 ~~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g----~~~~~~l~~~~~~~~~~~-~~~l~l~   99 (709)
                      ...++.--.+|+++.|+=.=+++|++++++..|+.-.+. .+..+-++++    ++++.++.++    .... ...+.+|
T Consensus        46 ~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~-lsL~~Nwii~P~lm~~la~~fl~~----~pey~~GlILlg  120 (342)
T COG0798          46 FGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLI-LSLFVNWIIGPLLMFALAWFFLPD----EPEYRAGLILLG  120 (342)
T ss_pred             eCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHH
Confidence            344556667889999998899999999998766532222 2233333333    3333333322    2211 2223333


Q ss_pred             HHHhhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-ccchhhHHHHHHHHHHHHHHHHH
Q 036516          100 VVNSMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN-LTTIKPLYITLVVIVYYIIVIFL  178 (709)
Q Consensus       100 ~~ls~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~v  178 (709)
                      .+=| +|-..+-     -++.+.+. ..++..-.+||++.+++++......-+..+ ..+++   .++..+...+.+-++
T Consensus       121 lApC-~aMVivw-----~~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~~~l~v~~~~v~~~---~i~~Sv~lyl~iPli  190 (342)
T COG0798         121 LAPC-IAMVIVW-----SGLAKGDR-ELTLVLVAFNSLLQIVLYAPLGKFFLGVISISVPFW---TIAKSVLLYLGIPLI  190 (342)
T ss_pred             hhhh-HHHHHHH-----HhhccCcH-hhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccHH---HHHHHHHHHHHHHHH
Confidence            3222 2222332     24444443 456666779999999998766554332222 23344   444444433344444


Q ss_pred             HHHHHHHHHhhc
Q 036516          179 VRPLTMRIVSKN  190 (709)
Q Consensus       179 ~r~~~~~i~~~~  190 (709)
                      ...+.+++..|.
T Consensus       191 ~G~lTR~i~~k~  202 (342)
T COG0798         191 AGVLTRYILIKK  202 (342)
T ss_pred             HHHHHHHHHHHh
Confidence            444555555553

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.84  E-value=0.24  Score=57.49  Aligned_cols=133  Identities=9%  Similarity=0.036  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCC-ChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHH
Q 036516          203 ITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGP-PLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIE  281 (709)
Q Consensus       203 ~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~-~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~  281 (709)
                      .++..+++++.++..+|++.++|=.++|+++.... ..-+. .+.++.+ ..+=+-++....|+++|++.+... .....
T Consensus        13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~-~~~~~   89 (558)
T PRK10669         13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAV-KSIAI   89 (558)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHH-hhHHH
Confidence            34556667778888899999999999999995421 11111 1223333 455555667778999999877532 11111


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCccchhH
Q 036516          282 FIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQI  340 (709)
Q Consensus       282 ~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~  340 (709)
                      ...+..++.=++.++..++.++.++.+++.+|..++.-..  .++.....+.|.++.+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~  146 (558)
T PRK10669         90 PGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQR  146 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcc
Confidence            1111111222233344456778999999999987777433  34556666777665533

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=95.79  E-value=0.58  Score=45.94  Aligned_cols=106  Identities=14%  Similarity=0.226  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhhhcChHHHHhhhhhHHHH--HH-HHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHhh-chHHH
Q 036516           34 FGMILHAFVLGVQIDLGLVKHIRKRAVII--GI-TSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSM-TSLVV  109 (709)
Q Consensus        34 iGli~~lF~~Gle~d~~~l~~~~~~~~~i--~~-~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~-Ts~~v  109 (709)
                      +.+.+.||..|+++|++++++..|+...+  ++ ..+++.-.++++++..+.+..        .....|..+.. +.-+.
T Consensus         2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~--------~~~~~Gl~l~~~~P~~~   73 (187)
T PF01758_consen    2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLS--------PALALGLLLVAACPGGP   73 (187)
T ss_dssp             -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT----------HHHHHHHHHHHHS-B-T
T ss_pred             hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHhcCCcHH
Confidence            45778999999999999999877664432  22 233333334444442222221        11222222211 11122


Q ss_pred             HHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036516          110 ITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVR  150 (709)
Q Consensus       110 v~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~  150 (709)
                      .+.+...+  .+.+. .++++...++.+.+.++.-+...+.
T Consensus        74 ~s~~~t~l--~~Gd~-~ls~~lt~istll~~~~~P~~~~l~  111 (187)
T PF01758_consen   74 ASNVFTYL--AGGDV-ALSVSLTLISTLLAPFLMPLLLYLL  111 (187)
T ss_dssp             HHHHHHHH--TT--H-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--hCCCc-ccccceeeHHHHHHHHHHHHHHHHH
Confidence            22333332  23333 3666777788887777765555444

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]

Probab=95.76  E-value=0.15  Score=47.31  Aligned_cols=132  Identities=19%  Similarity=0.204  Sum_probs=79.8

Q ss_pred             eEEEEeec-cCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCC----C-------CCchhHHHHHHHHHhhhcCC
Q 036516          553 YHIVMLFI-GGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTE----M-------PDDHELDNQAFDEFKDSMVG  620 (709)
Q Consensus       553 ~~V~~~f~-Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~----~-------~~~~~~d~~~l~~~~~~~~~  620 (709)
                      .++++..- |.+..+.|++.+..+++..+..++++++.++........    .       ...+...++.+++.+.....
T Consensus         6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (154)
T COG0589           6 KKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAEA   85 (154)
T ss_pred             ceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            46777777 899999999999999999999999888876221100000    0       00123345556655543322


Q ss_pred             CcEEEEEEeecChh----hHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEee
Q 036516          621 NKIIFREEIVKDGI----GTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQ  696 (709)
Q Consensus       621 ~~v~y~e~~v~~g~----~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq  696 (709)
                      ..+...+..+..|.    ++....++  +++||+++|.++.         +.|.+ =-||-.-+-++.. .+++|||+..
T Consensus        86 ~~~~~~~~~~~~g~~~~~~i~~~a~~--~~adliV~G~~g~---------~~l~~-~llGsvs~~v~~~-~~~pVlvv~~  152 (154)
T COG0589          86 AGVPVVETEVVEGSPSAEEILELAEE--EDADLIVVGSRGR---------SGLSR-LLLGSVAEKVLRH-APCPVLVVRS  152 (154)
T ss_pred             cCCCeeEEEEecCCCcHHHHHHHHHH--hCCCEEEECCCCC---------ccccc-eeeehhHHHHHhc-CCCCEEEEcc
Confidence            22221233333332    23333333  3799999999742         23333 4588888888875 6679999975


Q ss_pred             c
Q 036516          697 Q  697 (709)
Q Consensus       697 ~  697 (709)
                      .
T Consensus       153 ~  153 (154)
T COG0589         153 E  153 (154)
T ss_pred             C
Confidence            3

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=95.75  E-value=3.5  Score=44.07  Aligned_cols=126  Identities=16%  Similarity=0.033  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHhchh--HhHHHHHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccch--h
Q 036516          201 FIITICIVLVTTILGTLVGQN--SILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEK--S  276 (709)
Q Consensus       201 ~~~vl~~~l~~~~~~~~~G~~--~~lGaf~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~--~  276 (709)
                      ....+..++..+++.+.+++.  ..+||++.+.++.-.....-.+-+.+    ..+-.-+.-.++|.+++...+...  .
T Consensus       157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l----~~~aqv~iG~~iG~~f~~~~l~~~~~~  232 (318)
T PF05145_consen  157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWL----VNAAQVLIGASIGSRFTRETLRELRRL  232 (318)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHH----HHHHHHHHHHHHHccccHHHHHHHHHH
Confidence            344555666777888888874  58888888877764311111111111    222333455788999997766543  3


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhcc
Q 036516          277 FIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDR  333 (709)
Q Consensus       277 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~  333 (709)
                      +...++..+..+..-.+.+++.+++.++|+.+++.   .+.|-|.-|+.+.....+.
T Consensus       233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~  286 (318)
T PF05145_consen  233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGA  286 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCC
Confidence            33344455555566677788888999999987764   3679999998877665543

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=95.71  E-value=2.9  Score=45.73  Aligned_cols=92  Identities=13%  Similarity=0.274  Sum_probs=55.3

Q ss_pred             hhHhHHHHHHHHhcCCCC------ChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHH
Q 036516          220 QNSILTAFFFGLCLPDGP------PLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFT  293 (709)
Q Consensus       220 ~~~~lGaf~~Gl~ip~~~------~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~  293 (709)
                      +....+|++.|+++.+..      ...++.++++    .++.+-+|.+..=+.++++.+.+....+.+++++-.++.=+.
T Consensus       247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I----~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f  322 (368)
T PF03616_consen  247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRI----SGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLF  322 (368)
T ss_pred             CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHH----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456789999999998631      1223333344    555666666667777888877765333333334334444455


Q ss_pred             HHHHhHhhhCCCHHHHHHHHHHh
Q 036516          294 GVMVPSLFFGMSFLKASCLALIM  316 (709)
Q Consensus       294 ~~~l~~~~~~~~~~~~~~lg~~m  316 (709)
                      ..++..|.+|.++ |+..++...
T Consensus       323 ~~fv~fr~~gkdy-daavm~~G~  344 (368)
T PF03616_consen  323 AYFVTFRVMGKDY-DAAVMSAGF  344 (368)
T ss_pred             HHHHhhhhhCCCh-hHHHHhhhh
Confidence            6666778888886 665554443

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=95.70  E-value=0.63  Score=49.75  Aligned_cols=292  Identities=12%  Similarity=0.075  Sum_probs=144.8

Q ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHH----h--hhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhh
Q 036516           19 LFPMGSRYVLRTFAEFGMILHAFVL----G--VQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETA   92 (709)
Q Consensus        19 ~fp~~~~~~l~~la~iGli~~lF~~----G--le~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~   92 (709)
                      ++|++..+..+.+-+=+=.+.+|.+    |  +.||.+.++|...|-+...+.+.+.-+++|.+++.+++....      
T Consensus         8 ~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~------   81 (347)
T TIGR00783         8 ILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFD------   81 (347)
T ss_pred             CCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh------
Confidence            4565555554444332222233333    3  489999999999998888888888888888888877765431      


Q ss_pred             HHHHHHHHHH-----hhchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---ccchhhHHH
Q 036516           93 SSIAASVVVN-----SMTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN---LTTIKPLYI  164 (709)
Q Consensus        93 ~~~l~l~~~l-----s~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~---~~~~~~~~~  164 (709)
                      ...+++.+-.     ..-+.|.-.-.=+-++.-..+.=..++.+.++.++++++.-+++--+......   ...+.    
T Consensus        82 ~~~~~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~~~~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~G~L~----  157 (347)
T TIGR00783        82 HSLMYIVMPIMAGGVGAGIVPLSIIYSAITGRSSEEIFSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGELV----  157 (347)
T ss_pred             HhhheeeehhcCCCcccchhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCceEe----
Confidence            1111111100     01111211100011222233333445555666666666665544333221000   00000    


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhhccc-CCCCchhHHHH--HHHHH-HHHHHHHHHh-chhHhHHHHHHHHhcCCCCC
Q 036516          165 TLVVIVYYIIVIFLVRPL-TMRIVSKNSE-EESMNQNHFII--TICIV-LVTTILGTLV-GQNSILTAFFFGLCLPDGPP  238 (709)
Q Consensus       165 ~~~~i~~~~~~~~v~r~~-~~~i~~~~~~-~~~~~e~~~~~--vl~~~-l~~~~~~~~~-G~~~~lGaf~~Gl~ip~~~~  238 (709)
                                     |.- -.-..+..++ ..+.+-.....  .++.. +..+.+.+.+ ++|+..-..++|.++....-
T Consensus       158 ---------------~~~~~~~~~~~~~~~~~~~~~~~~g~Gl~~a~~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~~gl  222 (347)
T TIGR00783       158 ---------------RSEKREDAEKAKEITEIKIDVKLMGSGVLFAVALFMAGGLLKSFPGIPAYAFMILIAAALKAFGL  222 (347)
T ss_pred             ---------------ecCCcchhhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC
Confidence                           000 0000000000 00111111111  11111 1111122222 56777777788887776544


Q ss_pred             hhhHHHhhhhhh---hHhhhhHHHHHHhhhc-cccccccch-hhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHH-HHHH
Q 036516          239 LGTQLVQKLDFF---TSGFLLPVFCAISGIR-MELYLINEK-SFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLK-ASCL  312 (709)
Q Consensus       239 ~~~~l~~kl~~~---~~~~flPlFF~~~G~~-~d~~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~-~~~l  312 (709)
                      ..+++.++...+   ...-+.+..++-+|+. +|++.+.+. ++. .+++++..+++=.+++++.+++.|+=+-| ++.-
T Consensus       223 lp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~-~vviiv~~Vlg~ii~s~lvGKllG~YPiE~aIta  301 (347)
T TIGR00783       223 VPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ-FVVICLSVVVAMILGGAFLGKLMGMYPVESAITA  301 (347)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh-HhhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            445555554443   3333444444556766 787766544 333 45566667778888999999999965545 5566


Q ss_pred             HHHhhhh-hhHHHHHHHhhhccCcc
Q 036516          313 ALIMCCR-GIAEIAVYCMWKDRKII  336 (709)
Q Consensus       313 g~~m~~k-G~~~l~~~~~~~~~~~i  336 (709)
                      |+.|+.+ |.-|+++.+.+.+.+++
T Consensus       302 gLC~~~~GGtGDvavLsAa~RM~Lm  326 (347)
T TIGR00783       302 GLCNSGMGGTGDVAVLSASNRMNLI  326 (347)
T ss_pred             hhhccCCCCCCceeeeehhhhcccc
Confidence            7677766 45567777777666665

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.70  E-value=0.33  Score=56.71  Aligned_cols=113  Identities=12%  Similarity=0.082  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCC-CChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHH
Q 036516          202 IITICIVLVTTILGTLVGQNSILTAFFFGLCLPDG-PPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKI  280 (709)
Q Consensus       202 ~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~-~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~  280 (709)
                      ...++...++..++..+|+++++|=.++|+++... ...-.. .+.++.+ ..+-+.++.+..|+++|+..+.... ...
T Consensus        11 ~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LLF~iGLel~~~~l~~~~-~~~   87 (601)
T PRK03659         11 VLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-VDEILHF-SELGVVFLMFIIGLELNPSKLWQLR-RSI   87 (601)
T ss_pred             HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-HHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHH-HHH
Confidence            34455555667788889999999999999998542 111111 1234443 4556666777889999998775431 001


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhh
Q 036516          281 EFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMC  317 (709)
Q Consensus       281 ~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~  317 (709)
                      ..+....++.-.+.....++++++++..++.+|..+.
T Consensus        88 ~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la  124 (601)
T PRK03659         88 FGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLA  124 (601)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            1111111111111122234456889999988886554

>TIGR00832 acr3 arsenical-resistance protein

Probab=95.57  E-value=3.4  Score=44.46  Aligned_cols=101  Identities=11%  Similarity=0.064  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhhhcChHHHHhhhhhHHHH--H-HHHHH-HHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHhhchH-H
Q 036516           34 FGMILHAFVLGVQIDLGLVKHIRKRAVII--G-ITSTL-LPLVFGLSSFRIVQRISHLDDETASSIAASVVVNSMTSL-V  108 (709)
Q Consensus        34 iGli~~lF~~Gle~d~~~l~~~~~~~~~i--~-~~~~~-ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~-~  108 (709)
                      +++.++||-.|++++++++++..|+...+  + ..+++ .|+ ++++++..+.+..        ..+.+|..+-...+ .
T Consensus        47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl-la~~l~~l~~~~~--------p~l~~GliLv~~~Pgg  117 (328)
T TIGR00832        47 IGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF-LMFLLAWLFLRDL--------FEYIAGLILLGLARCI  117 (328)
T ss_pred             HHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHcCCC--------HHHHHHHHHHHhcchH
Confidence            45668999999999999998766554322  2 22332 343 4555555442221        11333333322111 1


Q ss_pred             HHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHH
Q 036516          109 VITGLLKELKMLNSELGRLAASITIVSHIFGWSASMIL  146 (709)
Q Consensus       109 vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~  146 (709)
                      +.+.+.+.+  .+.+. .++++...++-+++.++.-..
T Consensus       118 ~~S~v~T~l--AkGnv-alsv~lt~~stLl~~~~~P~l  152 (328)
T TIGR00832       118 AMVFVWNQL--AKGDP-EYTLVLVAVNSLFQVFLYAPL  152 (328)
T ss_pred             HHHHHHHHH--cCCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence            223333333  34444 366666677777776666433

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>PRK05326 potassium/proton antiporter; Reviewed

Probab=95.56  E-value=0.19  Score=58.30  Aligned_cols=129  Identities=16%  Similarity=0.225  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCChhhHH-HhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHH
Q 036516          203 ITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGTQL-VQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIE  281 (709)
Q Consensus       203 ~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~~~~l-~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~  281 (709)
                      +++++..+++.++..+|+..+++-.++|+++.....-.-.. ...+-.....+.+++.....|+++|+..+... +....
T Consensus        13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~-~~~~~   91 (562)
T PRK05326         13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPA-LGPAL   91 (562)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHH-HHHHH
Confidence            34445556667778888889999999999887532110000 01122334678888889999999999887643 33333


Q ss_pred             HHHHHHHHHHHH-HHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccC
Q 036516          282 FIILMSYLGKFT-GVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRK  334 (709)
Q Consensus       282 ~ii~~~~~~K~~-~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~  334 (709)
                      .+..+.++.-.+ .++...+++++++.+++.+|.++++-...  ++..+-.+.|
T Consensus        92 ~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a--~v~~iL~~~~  143 (562)
T PRK05326         92 SLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA--AVFSLLRGKG  143 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH--HHHHHHhccC
Confidence            333333332222 23445567799999999999987776544  2334444555

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=95.44  E-value=0.38  Score=50.96  Aligned_cols=153  Identities=17%  Similarity=0.140  Sum_probs=93.5

Q ss_pred             HhchhHhHHHHHHHHhcCC-CCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Q 036516          217 LVGQNSILTAFFFGLCLPD-GPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGV  295 (709)
Q Consensus       217 ~~G~~~~lGaf~~Gl~ip~-~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~  295 (709)
                      ..++++.+=|.+.|+++.| .....+....-++. ....++++=-+..|.++++..+.+..+......++...+.=.++.
T Consensus        23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~-~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~  101 (305)
T PF03601_consen   23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKF-SSKKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTY  101 (305)
T ss_pred             ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHH-HHHHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            3567778888899999997 44444555444443 356788888899999999988775544333333333333333444


Q ss_pred             HHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCccchh-HH--HHHHHHHHHHHHHHHHHHHhhcCccccccch
Q 036516          296 MVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQ-IF--AIMITNMVIITGISTTIVGYLYDPSRRYKLD  372 (709)
Q Consensus       296 ~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~-~~--~~lv~~~ll~t~i~~plv~~ly~p~~~~~~~  372 (709)
                      ++..|.+|+|.+.+..+|...+.=|.-.++...-..+.+  +++ .+  ..+.+.-.+..++.|.+.+++.-+...+--+
T Consensus       102 ~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~--~~~~a~ava~V~lfg~vam~~~P~l~~~l~l~~~~~G~w  179 (305)
T PF03601_consen  102 WLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAK--EEDVAYAVATVFLFGTVAMFLYPLLGHALGLSPQQFGAW  179 (305)
T ss_pred             HHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCC--CCceeeeehHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            444499999999999999998888887766554444333  122 11  2222222333444566666655554444333

; GO: 0016021 integral to membrane

>COG2855 Predicted membrane protein [Function unknown]

Probab=95.16  E-value=0.18  Score=53.21  Aligned_cols=115  Identities=20%  Similarity=0.183  Sum_probs=82.6

Q ss_pred             HHHHHhchhHhHHHHHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHH
Q 036516          213 ILGTLVGQNSILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKF  292 (709)
Q Consensus       213 ~~~~~~G~~~~lGaf~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~  292 (709)
                      ...+..|+++..=|.+.|+++...++...+...-++. ....++++=.+..|++++++.+.+..+. .+.+.+..+..-+
T Consensus        30 ~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~f-s~k~LLr~gIvLlG~~ltl~~i~~~G~~-~v~~~~~~l~~t~  107 (334)
T COG2855          30 FFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITF-SSKKLLRLGIVLLGFRLTLSDIADVGGS-GVLIIAITLSSTF  107 (334)
T ss_pred             HHhhhcCchHHHHHHHHHHHHhccccchhhhccchhh-hHHHHHHHHHHHHcceeeHHHHHHcCcc-HHHHHHHHHHHHH
Confidence            3445566668888999999998665555555444544 3677888888999999999887754333 2334444455566


Q ss_pred             HHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHh
Q 036516          293 TGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCM  329 (709)
Q Consensus       293 ~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~  329 (709)
                      +.++..++++|+|++.+..+|..-+.=|.-.+....-
T Consensus       108 ~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~p  144 (334)
T COG2855         108 LFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAP  144 (334)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCC
Confidence            7777778899999999999999888888776655443

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)

Probab=95.15  E-value=0.053  Score=45.73  Aligned_cols=49  Identities=18%  Similarity=-0.009  Sum_probs=40.1

Q ss_pred             ChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhH-HHHHHHhhcCCccEE
Q 036516          478 TMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIR-ALNRNVLHKAPCSVG  532 (709)
Q Consensus       478 ~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~-~~~~~Vl~~apCsVg  532 (709)
                      .+++.+.+.|++.++|.|++|.|+....+..      ..+ ++..++.++++|||.
T Consensus        35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~------~~~~~~~~~~~~~~~~~vl   84 (86)
T cd01984          35 AFVRILKRLAAEEGADVIILGHNADDVAGRR------LGASANVLVVIKGAGIPVL   84 (86)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCchhhhhhc------cCchhhhhhcccccCCcee
Confidence            7889999999999999999999887554332      234 678899999999974

The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]

Probab=95.04  E-value=1.1  Score=47.75  Aligned_cols=288  Identities=12%  Similarity=0.095  Sum_probs=138.8

Q ss_pred             ccCCCCcHHHHHHHHHHHHHHHHHHHhh------hcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchh
Q 036516           18 GLFPMGSRYVLRTFAEFGMILHAFVLGV------QIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDET   91 (709)
Q Consensus        18 ~~fp~~~~~~l~~la~iGli~~lF~~Gl------e~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~   91 (709)
                      .++|++..+....+-.=+=.+.+|.+++      -||.+.+-|..++-+...+.+++.-...|.+++..++.... +...
T Consensus        93 ~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~~~~-d~~m  171 (438)
T COG3493          93 NLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGLSFQ-DTMM  171 (438)
T ss_pred             ccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChH-Heee
Confidence            3456655555555544444556676664      68888888888888877778888777888888877765431 0000


Q ss_pred             hHHHHHHHHHHhhchHH--HHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----ccc-------
Q 036516           92 ASSIAASVVVNSMTSLV--VITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVRDSQDN----LTT-------  158 (709)
Q Consensus        92 ~~~~l~l~~~ls~Ts~~--vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~----~~~-------  158 (709)
                      ....-.++--...-+.|  .++.  +-.+..+.+.=..++.+..+.++++++.-+++--+.....+    ...       
T Consensus       172 ~~vlPIM~GG~GaGavPLS~iYs--~itg~s~~~~~s~lipal~igNvfAIi~aall~~iG~K~psltGnG~Lv~~~~~~  249 (438)
T COG3493         172 YVVLPIMGGGMGAGAVPLSEIYS--SITGGSQEEYFSQLIPALTIGNVFAIICAALLNKIGKKKPSLTGNGELVRSKSKE  249 (438)
T ss_pred             eEEeeeccCCCCCCcccHHHHHH--HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCccCCceEEeccccc
Confidence            00000001000011111  1111  11233334555566777778888887776655443221000    000       


Q ss_pred             ---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHH
Q 036516          159 ---------IKPLYITLVVIVYYIIVIFLVRPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFF  229 (709)
Q Consensus       159 ---------~~~~~~~~~~i~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~  229 (709)
                               ..+=......-...+.+++....++..++. .|      ..+.+.++     .+.+-...++         
T Consensus       250 ~~~ee~~~~~k~d~~~~g~G~llA~~lf~~g~il~kf~~-~P------~~va~MIi-----l~a~lk~~nl---------  308 (438)
T COG3493         250 ATEEELEKEGKLDLKLMGAGMLLACTLFMAGGILGKFIG-LP------GPVAFMII-----LVAILKAANL---------  308 (438)
T ss_pred             hhhhhhhhccCccHHHHHHHHHHHHHHHHHHHHHHHhhc-CC------chHHHHHH-----HHHHHHHhCc---------
Confidence                     000001111111122223333333332221 12      11111111     1111111111         


Q ss_pred             HHhcCCCCChhhHHHhhhhhh-hHhhhhHHHHHHhhhc-cccccccch-hhHHHHHHHHHHHHHHHHHHHHhHhhhCCCH
Q 036516          230 GLCLPDGPPLGTQLVQKLDFF-TSGFLLPVFCAISGIR-MELYLINEK-SFIKIEFIILMSYLGKFTGVMVPSLFFGMSF  306 (709)
Q Consensus       230 Gl~ip~~~~~~~~l~~kl~~~-~~~~flPlFF~~~G~~-~d~~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~  306 (709)
                         +|+.   -++=..++..| .+.+.-|+.+. +|.. +|+..+.+. +|.. +++.+...++-..+.++.+|+.|+-+
T Consensus       309 ---vp~~---i~~GA~~l~~F~sk~~t~~Lm~g-iGv~ytdl~ev~~alt~~~-vii~~~vVl~~i~~~~f~grl~~~YP  380 (438)
T COG3493         309 ---VPKE---IEEGAKQLSQFFSKNLTWPLMAG-IGVAYTDLNEVAAALTWQN-VIIALSVVLGAILGGAFVGRLMGFYP  380 (438)
T ss_pred             ---CCHH---HHHHHHHHHHHHHHhhHHHHHHh-hhhccccHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence               2221   12222233333 34445555544 5655 787766544 4543 34444555677888999999999655


Q ss_pred             HH-HHHHHHHhhhhh-hHHHHHHHhhhccCccc
Q 036516          307 LK-ASCLALIMCCRG-IAEIAVYCMWKDRKIIT  337 (709)
Q Consensus       307 ~~-~~~lg~~m~~kG-~~~l~~~~~~~~~~~i~  337 (709)
                      -| ++.-|+.|+.+| .-|+.+.+.+-+.++++
T Consensus       381 VEaAI~aglC~a~~GGtGDvaVLsAa~RM~Lmp  413 (438)
T COG3493         381 VEAAITAGLCMANMGGTGDVAVLSAADRMELMP  413 (438)
T ss_pred             hHHHHHHhHHhcCCCCCCchHHhhhcchhcccc
Confidence            55 555558888875 45677777776666654

>TIGR00698 conserved hypothetical integral membrane protein

Probab=95.01  E-value=4  Score=43.85  Aligned_cols=46  Identities=4%  Similarity=0.130  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 036516           29 RTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSF   78 (709)
Q Consensus        29 ~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~   78 (709)
                      +.+=++|++    +.|.+++++.+.+.|.+.+.+....+...+.++..++
T Consensus        65 k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~~g  110 (335)
T TIGR00698        65 PFLLRIGIT----LYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVFLG  110 (335)
T ss_pred             HHHHHHHHH----HHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            355567766    4699999999999999887766665555555544443

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=94.87  E-value=2.4  Score=45.71  Aligned_cols=101  Identities=13%  Similarity=0.206  Sum_probs=66.2

Q ss_pred             HHHHHHHhc-----hhHhHHHHHHHHhcCCCCChh--hHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHH
Q 036516          211 TTILGTLVG-----QNSILTAFFFGLCLPDGPPLG--TQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFI  283 (709)
Q Consensus       211 ~~~~~~~~G-----~~~~lGaf~~Gl~ip~~~~~~--~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~i  283 (709)
                      ..++.++++     +....++++.|.++.+.-+..  .++.++.-+.+.++-+-+|.+..=|.+.++.+.+......+++
T Consensus       234 G~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~viL  313 (404)
T COG0786         234 GKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLLVIL  313 (404)
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            335556655     466889999999998742211  1233333344467778888888888888888776545445555


Q ss_pred             HHHHHHHHHHHHHHhHhhhCCCHHHHHH
Q 036516          284 ILMSYLGKFTGVMVPSLFFGMSFLKASC  311 (709)
Q Consensus       284 i~~~~~~K~~~~~l~~~~~~~~~~~~~~  311 (709)
                      .+-..+--+.+.+...|.+|.+...+..
T Consensus       314 ~vQ~i~m~lfa~fvtfr~mG~~YdAaV~  341 (404)
T COG0786         314 AVQTIVMALFAIFVTFRLMGKNYDAAVL  341 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence            5555555667777888888888766554

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=93.91  E-value=1.1  Score=53.13  Aligned_cols=71  Identities=7%  Similarity=0.124  Sum_probs=49.6

Q ss_pred             hHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhh--hCCCHHHHHHHHHHhhhhhhH
Q 036516          251 TSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLF--FGMSFLKASCLALIMCCRGIA  322 (709)
Q Consensus       251 ~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~--~~~~~~~~~~lg~~m~~kG~~  322 (709)
                      ++.+.+++-.+..|++++...+... |..+..+++.+...-++++.+.+++  .+++|..++.+|.++.+-.-+
T Consensus        74 IteIvL~I~LFa~Gl~L~~~~Lrr~-wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV  146 (810)
T TIGR00844        74 ISRILLCLQVFAVSVELPRKYMLKH-WVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV  146 (810)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence            4667788888889999999877654 4444444444444444445555543  499999999999999987754

This model is specific for the fungal members of this family.

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=93.79  E-value=0.6  Score=45.94  Aligned_cols=107  Identities=19%  Similarity=0.253  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHhhhcCh-----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHh
Q 036516           29 RTFAEFGMILHAFVLGVQIDL-----GLVKHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVVVNS  103 (709)
Q Consensus        29 ~~la~iGli~~lF~~Gle~d~-----~~l~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls  103 (709)
                      +...+..+.+++|.+|+++--     +.+++.+++++.+.+..++-.++.+.+++.++...       ..+++.++.-+.
T Consensus        23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~~~-------~~~~lav~sG~G   95 (191)
T PF03956_consen   23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLLGLS-------LKESLAVASGFG   95 (191)
T ss_pred             ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------HHHHHHHHccCc
Confidence            778899999999999998844     45677889999999999888888888888777322       245555554332


Q ss_pred             hchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHH
Q 036516          104 MTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMIL  146 (709)
Q Consensus       104 ~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~  146 (709)
                      =  +.....++.|+  .+.+.|.++.-+=++-+++++++.-++
T Consensus        96 w--YSlsg~~i~~~--~~~~~G~iafl~n~~RE~~a~~~~P~~  134 (191)
T PF03956_consen   96 W--YSLSGVLITQL--YGPELGTIAFLSNLFREILAIILIPLL  134 (191)
T ss_pred             H--HHhHHHHHHhh--hCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2  11112233343  356788877777777777776665443

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>TIGR00841 bass bile acid transporter

Probab=93.79  E-value=10  Score=39.88  Aligned_cols=104  Identities=18%  Similarity=0.174  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHhhhcChHHHHhhhh--hHHHHHHH-HH-HHHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHH-hhc
Q 036516           31 FAEFGMILHAFVLGVQIDLGLVKHIRK--RAVIIGIT-ST-LLPLVFGLSSFRIVQRISHLDDETASSIAASVVVN-SMT  105 (709)
Q Consensus        31 la~iGli~~lF~~Gle~d~~~l~~~~~--~~~~i~~~-~~-~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~l-s~T  105 (709)
                      +.-..+.+.||..|+.++.+.+++..+  +...+++. .+ +.|.+. ++.+.+++..         .....|..+ +.+
T Consensus         9 ~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~~l~---------~~~~~glvL~~~~   78 (286)
T TIGR00841         9 ILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVFKLP---------PELAVGVLIVGCC   78 (286)
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHhCCC---------HHHHHHHHheeeC
Confidence            333448889999999999999988766  34444433 33 455543 5555544211         112222222 222


Q ss_pred             hHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 036516          106 SLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILL  147 (709)
Q Consensus       106 s~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~  147 (709)
                      ..++.+.++.+.-  +. -..++.+...++-+++.+.+-+..
T Consensus        79 P~~~~s~v~t~~~--~g-n~~la~~~~~~stlls~vt~Pl~l  117 (286)
T TIGR00841        79 PGGTASNVFTYLL--KG-DMALSISMTTCSTLLALGMMPLLL  117 (286)
T ss_pred             CCchHHHHHHHHh--CC-CHhhhhHHHHHHHHHHHHHHHHHH
Confidence            2222233333332  22 235566666666666666654433

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>TIGR00698 conserved hypothetical integral membrane protein

Probab=93.57  E-value=2.1  Score=45.99  Aligned_cols=112  Identities=15%  Similarity=0.133  Sum_probs=71.4

Q ss_pred             hchhHhHHHHHHHHhcCCCC--ChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHH-H
Q 036516          218 VGQNSILTAFFFGLCLPDGP--PLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFT-G  294 (709)
Q Consensus       218 ~G~~~~lGaf~~Gl~ip~~~--~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~-~  294 (709)
                      .|+++.+=|.+.|+++.+..  +..+....-+ .+....++-+=-+..|.++++..+....+... .+.+.....-++ +
T Consensus        29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi-~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~l-~~~~~~v~~~~~~~  106 (335)
T TIGR00698        29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGV-LFAKPFLLRIGITLYGFRLTFPYIADVGPNEI-VADTLILTSTFFLT  106 (335)
T ss_pred             CCCcHHHHHHHHHHHHhccccccchhhccchH-HHHHHHHHHHHHHHHCccccHHHHHHhhHHHH-HHHHHHHHHHHHHH
Confidence            36777777888999988732  1222222222 23455667777788999999988765433322 222223333334 4


Q ss_pred             HHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhh
Q 036516          295 VMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWK  331 (709)
Q Consensus       295 ~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~  331 (709)
                      .++..|.+|++++.+..+|...+.=|.-.++...-..
T Consensus       107 ~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i  143 (335)
T TIGR00698       107 VFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVI  143 (335)
T ss_pred             HHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhcccc
Confidence            4555588999999999999988888877666544333

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]

Probab=93.42  E-value=0.36  Score=56.35  Aligned_cols=124  Identities=15%  Similarity=0.111  Sum_probs=82.2

Q ss_pred             cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCc
Q 036516          384 SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYG  463 (709)
Q Consensus       384 e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  463 (709)
                      ..|||||++.......+++-+..++...  ....+++|+.....+..            .....+++...++ ..++-.+
T Consensus       248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~--~a~~~av~v~~~~~~~~------------~~~~~~~l~~~~~-Lae~lGa  312 (890)
T COG2205         248 RERILVCISGSPGSEKLIRRAARLASRL--HAKWTAVYVETPELHRL------------SEKEARRLHENLR-LAEELGA  312 (890)
T ss_pred             cceEEEEECCCCchHHHHHHHHHHHHHh--CCCeEEEEEeccccccc------------cHHHHHHHHHHHH-HHHHhCC
Confidence            5899999999999999999988888443  46778888875332211            1122233333333 4332222


Q ss_pred             ceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCC-ccEEEE
Q 036516          464 HVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAP-CSVGIL  534 (709)
Q Consensus       464 ~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~ap-CsVgIl  534 (709)
                          +..+..+  .++.+.|.+.|++.++.-||+|-+.+.+-..      ...+++.+++++++| .+|-|+
T Consensus       313 ----e~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~------~~~~~l~~~L~~~~~~idv~ii  372 (890)
T COG2205         313 ----EIVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRR------LFKGSLADRLAREAPGIDVHIV  372 (890)
T ss_pred             ----eEEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHH------HhcccHHHHHHhcCCCceEEEe
Confidence                2333455  6999999999999999999999876532111      124788999999985 455443

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=93.34  E-value=1.9  Score=52.39  Aligned_cols=41  Identities=2%  Similarity=0.054  Sum_probs=27.0

Q ss_pred             CcceEEEEeeccCcChHHHHHHHHHH--hcCCCeEEEEEEeee
Q 036516          550 ELLYHIVMLFIGGADDREALAYSRRM--AEHPNTSLTVVWFIT  590 (709)
Q Consensus       550 ~~~~~V~~~f~Gg~ddreAl~~a~rm--a~~~~~~ltvl~v~~  590 (709)
                      ++..||++++-+-.|-+-.+.++...  .+.....+.++|+++
T Consensus       456 ~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLve  498 (832)
T PLN03159        456 DAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVE  498 (832)
T ss_pred             CCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEe
Confidence            44569999998444445556665554  234456888999986

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=93.23  E-value=1.9  Score=40.93  Aligned_cols=120  Identities=17%  Similarity=0.096  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHhchh--HhHHHHHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccch--hhHHH
Q 036516          205 ICIVLVTTILGTLVGQN--SILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEK--SFIKI  280 (709)
Q Consensus       205 l~~~l~~~~~~~~~G~~--~~lGaf~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~--~~~~~  280 (709)
                      +......+++.+.+|+.  .++||++++.++.-.....-++-+.    ...+-.-+.-..+|.+++...+.+.  .+...
T Consensus         4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~----~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~   79 (156)
T TIGR03082         4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPW----LLALAQVVIGILIGSRFTREVLAELKRLWPAA   79 (156)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHH----HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            34455566667777875  7889988888877432111111111    2233333555789999998776643  34334


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhh
Q 036516          281 EFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWK  331 (709)
Q Consensus       281 ~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~  331 (709)
                      ....+..+..-++.+++..+..++|+.+++. |  ..|-|.-|+......+
T Consensus        80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~L-a--~~PGGl~~m~~~A~~~  127 (156)
T TIGR03082        80 LLSTVLLLALSALLAWLLARLTGVDPLTAFL-A--TSPGGASEMAALAAEL  127 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-H--hCCchHHHHHHHHHHh
Confidence            5555556666777888889999999998863 3  5688888887765533

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=93.05  E-value=1.1  Score=51.35  Aligned_cols=116  Identities=13%  Similarity=0.142  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCCChhh-HHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHH
Q 036516          205 ICIVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLGT-QLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFI  283 (709)
Q Consensus       205 l~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~~~-~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~i  283 (709)
                      ++.+.+...+++.+++.+.++-+++|+++...+.... .+..   .....+++|......|+++|...+... +..+..+
T Consensus         7 ~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~---~~~~~~~Lp~lLF~~g~~~~~~~l~~~-~~~i~~l   82 (525)
T TIGR00831         7 VMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR---EIVLFLFLPPLLFEAAMNTDLRELREN-FRPIALI   82 (525)
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH---HHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHH
Confidence            3334444555666677777777777777653211100 0111   122457889999999999999887654 3223333


Q ss_pred             HHHHHHHH-HHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHH
Q 036516          284 ILMSYLGK-FTGVMVPSLFFGMSFLKASCLALIMCCRGIAEI  324 (709)
Q Consensus       284 i~~~~~~K-~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l  324 (709)
                      .+...+.- .+.++...+..++|+..++.+|.++++..-+..
T Consensus        83 a~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav  124 (525)
T TIGR00831        83 AFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV  124 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence            33332222 223333334678999999999999998877653

This model is specific for the bacterial members of this family.

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=91.93  E-value=2.3  Score=46.46  Aligned_cols=115  Identities=14%  Similarity=0.119  Sum_probs=62.3

Q ss_pred             HhhhhHHHHHHhhhccccccccch--hhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHH-HHHH
Q 036516          252 SGFLLPVFCAISGIRMELYLINEK--SFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEI-AVYC  328 (709)
Q Consensus       252 ~~~flPlFF~~~G~~~d~~~l~~~--~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l-~~~~  328 (709)
                      .++|+-.||+.+|+..++..+.+.  .......+.....+...+.....+..++.++.-.+..|-.--..|+-.. +...
T Consensus        66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g~  145 (368)
T PF03616_consen   66 QDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFGP  145 (368)
T ss_pred             HHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHHH
Confidence            456777899999999998876543  1221222222334455555555667778887766554421112333332 3334


Q ss_pred             hhhcc-CccchhHHHHH--HHHHHHHHHHHHHHHHhhcCcc
Q 036516          329 MWKDR-KIITNQIFAIM--ITNMVIITGISTTIVGYLYDPS  366 (709)
Q Consensus       329 ~~~~~-~~i~~~~~~~l--v~~~ll~t~i~~plv~~ly~p~  366 (709)
                      ...+. |+-+.....+-  .+-.+....+..|+.+++.|+.
T Consensus       146 ~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~  186 (368)
T PF03616_consen  146 TFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKG  186 (368)
T ss_pred             HHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            44444 55444333322  2222334566789998877543

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>PRK10490 sensor protein KdpD; Provisional

Probab=91.06  E-value=0.78  Score=56.27  Aligned_cols=124  Identities=10%  Similarity=0.180  Sum_probs=73.6

Q ss_pred             cceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCCcEEEEEEee
Q 036516          551 LLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGNKIIFREEIV  630 (709)
Q Consensus       551 ~~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~v~y~e~~v  630 (709)
                      ...||++..-|+|+.+..++.|+|||+..++.+++++|.+++...   ....+++.-.+.+ ++..+...+.+......+
T Consensus       249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~---~~~~~~~~l~~~~-~lA~~lGa~~~~~~~~dv  324 (895)
T PRK10490        249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHR---LPEKKRRAILSAL-RLAQELGAETATLSDPAE  324 (895)
T ss_pred             cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCc---CCHHHHHHHHHHH-HHHHHcCCEEEEEeCCCH
Confidence            346899999999999999999999999999999999998642210   0111121111222 233333222111111111


Q ss_pred             cChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEE
Q 036516          631 KDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVV  694 (709)
Q Consensus       631 ~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv  694 (709)
                        .+.+++++++.  +.+.|++|++++.         -|  + --|-+-|-|....-+.-|.||
T Consensus       325 --a~~i~~~A~~~--~vt~IViG~s~~~---------~~--~-~~~s~~~~l~r~~~~idi~iv  372 (895)
T PRK10490        325 --EKAVLRYAREH--NLGKIIIGRRASR---------RW--W-RRESFADRLARLGPDLDLVIV  372 (895)
T ss_pred             --HHHHHHHHHHh--CCCEEEECCCCCC---------CC--c-cCCCHHHHHHHhCCCCCEEEE
Confidence              12355555544  7899999998753         25  2 135677777754222267777

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=90.92  E-value=26  Score=37.69  Aligned_cols=155  Identities=15%  Similarity=0.182  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHHHHHhchh--HhHHHHHHHHhcCCCCChhhHHHhhhhhhhHhhhhHHHHHHhhhccccccccch--h
Q 036516          201 FIITICIVLVTTILGTLVGQN--SILTAFFFGLCLPDGPPLGTQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEK--S  276 (709)
Q Consensus       201 ~~~vl~~~l~~~~~~~~~G~~--~~lGaf~~Gl~ip~~~~~~~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~--~  276 (709)
                      +.+.+...++.+.+...+++.  ..+|+++.|..+.-+....-++    -.....+-.-+.-..+|.++|-..+...  .
T Consensus       190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~l----P~wl~~va~~~iG~~IG~~f~~~~l~~~~r~  265 (352)
T COG3180         190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQL----PAWLLAVAQALIGALIGSRFDRSILREAKRL  265 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeC----CHHHHHHHHHHHHHHHcccccHHHHHHhHhh
Confidence            344445555556666666664  4788888888887653111111    1111222223445678888886554422  2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhhhccCccchhHHHHH-HHHHHHHHHHH
Q 036516          277 FIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMWKDRKIITNQIFAIM-ITNMVIITGIS  355 (709)
Q Consensus       277 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~i~~~~~~~l-v~~~ll~t~i~  355 (709)
                      .....+.++..++.-...+++.+++.+.++.+++.   ..+|-|.-++.....+.+.   |...-..+ ++=.++...+.
T Consensus       266 ~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~a---d~a~V~a~q~lRll~il~i~  339 (352)
T COG3180         266 LPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALGA---DPAFVMALQVLRLLFILLLG  339 (352)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHH
Confidence            22233444444555556677778888999987754   3678998888776666542   22111111 11122223444


Q ss_pred             HHHHHhhcCc
Q 036516          356 TTIVGYLYDP  365 (709)
Q Consensus       356 ~plv~~ly~p  365 (709)
                      |++.|++.|.
T Consensus       340 p~l~r~l~~~  349 (352)
T COG3180         340 PALARFLSKR  349 (352)
T ss_pred             HHHHHHHHHH
Confidence            7777775543

>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit

Probab=90.70  E-value=2.5  Score=44.99  Aligned_cols=116  Identities=11%  Similarity=0.142  Sum_probs=72.3

Q ss_pred             hhhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHH
Q 036516          249 FFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYC  328 (709)
Q Consensus       249 ~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~  328 (709)
                      .+.++++=|+-|.-+|..+|++-+....+...+ .-..+=+| +..+++.+..+|++.+|+-.+|.+=..-|-..+.+.+
T Consensus       101 gi~~gl~P~LIFlGIGAMtDFgpllanP~~~ll-~gaaAQ~G-iF~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~  178 (399)
T TIGR03136       101 TFSNSLVACILFFGIGAMSDISFILARPWASIT-VALFAEMG-TFATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASL  178 (399)
T ss_pred             HHhcccHHHHHHHhccHHhcchHHHhChHHHHH-HHHHHHhh-HHHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHH
Confidence            345788889999999999999876543222111 01122222 2344555667799999999999988888888877665


Q ss_pred             hhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 036516          329 MWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSRR  368 (709)
Q Consensus       329 ~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p~~~  368 (709)
                      .-. -+++.+-.-.+-.-|+++ =.+-||++|.+-.+++|
T Consensus       179 kLA-p~Llg~IaVAAYsYMaLV-PiiqPpimklLttkkER  216 (399)
T TIGR03136       179 ILA-KDLFVPISIIAYLYLSLT-YAGYPYLIKLLVPKKYR  216 (399)
T ss_pred             hhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhhcCHHHH
Confidence            432 223333222233334444 66689999987744433

Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters

Probab=90.31  E-value=3.6  Score=39.64  Aligned_cols=85  Identities=18%  Similarity=0.270  Sum_probs=59.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhhcChHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHH-
Q 036516           24 SRYVLRTFAEFGMILHAFVLGVQIDLGLV---KHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASV-   99 (709)
Q Consensus        24 ~~~~l~~la~iGli~~lF~~Gle~d~~~l---~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~-   99 (709)
                      +....+.+.++|+.+|++.+|++--++.+   |+.+.+...+++.-.++|.++++..++++.+..        .....| 
T Consensus        48 ~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~--------~~~~~G~  119 (169)
T PF06826_consen   48 PISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLN--------PGIAAGI  119 (169)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------HHHHHHH
Confidence            34566789999999999999999887655   556666677777777788888777777444332        123333 


Q ss_pred             HHHhhchHHHHHHHHHH
Q 036516          100 VVNSMTSLVVITGLLKE  116 (709)
Q Consensus       100 ~~ls~Ts~~vv~~iL~e  116 (709)
                      .+=+.|++|.+....+.
T Consensus       120 ~aGa~T~tp~L~~A~~~  136 (169)
T PF06826_consen  120 LAGALTSTPALAAAQEA  136 (169)
T ss_pred             HHccccCcHHHHHHHHh
Confidence            34456888888776554

Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins

Probab=89.63  E-value=2  Score=45.21  Aligned_cols=113  Identities=13%  Similarity=0.168  Sum_probs=72.4

Q ss_pred             hHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHhh
Q 036516          251 TSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCMW  330 (709)
Q Consensus       251 ~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~  330 (709)
                      -++++=|+-|.-+|..+|++-+....+..  ++-..+=+| +..+++.+..+|++.+|+..+|.+=..-|-..+.+.+.-
T Consensus        67 ~~~l~P~LIF~GIGAmtDFgpllanP~~~--llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~L  143 (360)
T PF03977_consen   67 SNGLFPPLIFMGIGAMTDFGPLLANPKTL--LLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKL  143 (360)
T ss_pred             hcchhhHHHHHHHhHHHhhHHHHhCHHHH--HHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhh
Confidence            46788899999999999998765442321  111122222 245666677789999999999998888888887766543


Q ss_pred             hccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 036516          331 KDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPSRR  368 (709)
Q Consensus       331 ~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p~~~  368 (709)
                      - -.++.+-.-.+-.-|+++ =.+-||++|.+-.+++|
T Consensus       144 A-p~LlgpIaVaAYsYMaLv-PiiqPpimklLttkkeR  179 (360)
T PF03977_consen  144 A-PHLLGPIAVAAYSYMALV-PIIQPPIMKLLTTKKER  179 (360)
T ss_pred             h-HHHHHHHHHHHHHHHHHH-hhhhhHHHHHhcCHHHH
Confidence            2 223333222223334444 66789999987754433

The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=88.37  E-value=3.8  Score=40.33  Aligned_cols=49  Identities=20%  Similarity=0.304  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHH
Q 036516          280 IEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYC  328 (709)
Q Consensus       280 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~  328 (709)
                      .+.+-+..++|-++++++.+++.++|++|++.+|..+.=...-...+..
T Consensus        58 ~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~  106 (191)
T PF03956_consen   58 ALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ  106 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence            4566677788999999999999999999999999887777666665544

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=86.63  E-value=40  Score=35.82  Aligned_cols=46  Identities=13%  Similarity=0.314  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHhhhcChHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 036516           29 RTFAEFGMILHAFVLGVQIDLGLVKHIRKRAVIIGITSTLLPLVFGLSSF   78 (709)
Q Consensus        29 ~~la~iGli~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~~g~~~~   78 (709)
                      +.+=++|.+    +.|.++++..+.+.+.+.+.+....+...+.+++.++
T Consensus        59 k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg  104 (305)
T PF03601_consen   59 KKLLRLGIV----LLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLG  104 (305)
T ss_pred             HHHHHHHHH----HHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence            356667766    4699999999999999888777776666666655544

; GO: 0016021 integral to membrane

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain

Probab=85.77  E-value=4.4  Score=38.42  Aligned_cols=85  Identities=15%  Similarity=0.233  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcChHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHH-H
Q 036516           26 YVLRTFAEFGMILHAFVLGVQIDLGLVKHIRK----RAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASV-V  100 (709)
Q Consensus        26 ~~l~~la~iGli~~lF~~Gle~d~~~l~~~~~----~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~-~  100 (709)
                      .....+.++|+.+|++.+|++--.+.+..-.+    ....++.+-.++|.+++..++..+.+..        .....| .
T Consensus        50 ~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~~~--------~~~~~G~~  121 (154)
T TIGR01625        50 SANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVAVALIKLLRIN--------YALTAGML  121 (154)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHH
Confidence            46777999999999999999998876643322    2333444444555555555554433322        123344 3


Q ss_pred             HHhhchHHHHHHHHHHhc
Q 036516          101 VNSMTSLVVITGLLKELK  118 (709)
Q Consensus       101 ~ls~Ts~~vv~~iL~el~  118 (709)
                      +=+.|++|.+.-..+..+
T Consensus       122 aGa~T~tpaL~aa~~~~~  139 (154)
T TIGR01625       122 AGATTNTPALDAANDTLR  139 (154)
T ss_pred             hccccChHHHHHHHHHhc
Confidence            456788898877665443

This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>TIGR02039 CysD sulfate adenylyltransferase, small subunit

Probab=85.12  E-value=3.3  Score=43.55  Aligned_cols=93  Identities=22%  Similarity=0.147  Sum_probs=56.7

Q ss_pred             EEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCC-cEEEEEEeecCh
Q 036516          555 IVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGN-KIIFREEIVKDG  633 (709)
Q Consensus       555 V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~-~v~y~e~~v~~g  633 (709)
                      .++.|.||+|+--.|.++++.-...+..+.++++.+..++         .+ ..+|.+++..++.-+ .+...+.....|
T Consensus        22 ~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F---------~E-t~efrd~~a~~~gl~l~v~~~~~~~~~g   91 (294)
T TIGR02039        22 PVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKF---------RE-MIAFRDHMVAKYGLRLIVHSNEEGIADG   91 (294)
T ss_pred             cEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCC---------HH-HHHHHHHHHHHhCCCEEEEechhhhhcC
Confidence            4577999999999999999886544567889998764443         22 345666666554323 332232221111


Q ss_pred             h-------h----------HHHHHHhhhcCCcEEEEecCCCCC
Q 036516          634 I-------G----------TTQVIQAFAETFDLFIVGKNHDPC  659 (709)
Q Consensus       634 ~-------~----------~~~~i~~~~~~~DLiiVG~~~~~~  659 (709)
                      .       +          ..+++++  .++|.++.|.+.+..
T Consensus        92 ~~~~~~~~~~~c~vlK~~pL~~al~e--~g~da~itG~RRDEe  132 (294)
T TIGR02039        92 INPFTEGSALHTDIMKTEALRQALDK--NQFDAAFGGARRDEE  132 (294)
T ss_pred             ccccccChHHHhhHHHHHHHHHHHHH--cCCCEEEecCChhhh
Confidence            1       1          2223332  479999999987643

In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]

Probab=84.75  E-value=5.3  Score=47.10  Aligned_cols=123  Identities=15%  Similarity=0.302  Sum_probs=75.1

Q ss_pred             ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCCC-cEEEEEEee
Q 036516          552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVGN-KIIFREEIV  630 (709)
Q Consensus       552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~-~v~y~e~~v  630 (709)
                      ..||++.--|++.....++.|.|+|+..+++.|++++.+++....   .+.+++.-++.+ ++.++..+. ...|     
T Consensus       248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~---~~~~~~~l~~~~-~Lae~lGae~~~l~-----  318 (890)
T COG2205         248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRL---SEKEARRLHENL-RLAEELGAEIVTLY-----  318 (890)
T ss_pred             cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccc---cHHHHHHHHHHH-HHHHHhCCeEEEEe-----
Confidence            468999999999999999999999999999999999987544311   111122221211 222232222 2223     


Q ss_pred             cChhhHHHHHHhhh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516          631 KDGIGTTQVIQAFA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ  695 (709)
Q Consensus       631 ~~g~~~~~~i~~~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq  695 (709)
                        |.++...+-+.+  .+.--+++|++++.         .|-+.=+ |.+.|-|+..--+..|-+|-
T Consensus       319 --~~dv~~~i~~ya~~~~~TkiViG~~~~~---------rw~~~~~-~~l~~~L~~~~~~idv~ii~  373 (890)
T COG2205         319 --GGDVAKAIARYAREHNATKIVIGRSRRS---------RWRRLFK-GSLADRLAREAPGIDVHIVA  373 (890)
T ss_pred             --CCcHHHHHHHHHHHcCCeeEEeCCCcch---------HHHHHhc-ccHHHHHHhcCCCceEEEee
Confidence              233444443333  36779999999864         4644322 78888887653222555553

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

Probab=84.74  E-value=18  Score=40.52  Aligned_cols=72  Identities=15%  Similarity=0.227  Sum_probs=51.2

Q ss_pred             hhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh--CCCHHHHHHHHHHhhhhhhHHHH
Q 036516          253 GFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF--GMSFLKASCLALIMCCRGIAEIA  325 (709)
Q Consensus       253 ~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~~~~~~lg~~m~~kG~~~l~  325 (709)
                      .+++|+-....|+++|...+... +..+..+.....+...++.....++.  ++|+..++.+|.++++-.-+.+.
T Consensus        64 ~l~l~ilLf~~g~~l~~~~l~~~-~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~  137 (429)
T COG0025          64 VLFLAILLFAGGLELDLRELRRV-WRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVS  137 (429)
T ss_pred             HHHHHHHHHHhHhcCCHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhH
Confidence            67788888889999999888764 33344444444445555555555555  89999999999999888766544

>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional

Probab=84.30  E-value=1.3  Score=47.02  Aligned_cols=125  Identities=12%  Similarity=0.122  Sum_probs=71.1

Q ss_pred             hhHhhhhHHHHHHhhhccccccccch-hhHHHHHHHHHHHHHHHHHHHHhHh--hhCCCHHHHHHHHHHhhhhhhHHHHH
Q 036516          250 FTSGFLLPVFCAISGIRMELYLINEK-SFIKIEFIILMSYLGKFTGVMVPSL--FFGMSFLKASCLALIMCCRGIAEIAV  326 (709)
Q Consensus       250 ~~~~~flPlFF~~~G~~~d~~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~--~~~~~~~~~~~lg~~m~~kG~~~l~~  326 (709)
                      +.++++=|+.|.-+|..+|++-+... ...+.....=.+++.-++++.....  ..+++.+|+-.+|.+=..-|-..+.+
T Consensus       131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfv  210 (433)
T PRK15475        131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYL  210 (433)
T ss_pred             HhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHh
Confidence            35678889999999999999876533 1111111222222222232222211  13789999999999888888887776


Q ss_pred             HHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCcc-ccccchhhcc
Q 036516          327 YCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPS-RRYKLDVRRA  376 (709)
Q Consensus       327 ~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p~-~~~~~~~~r~  376 (709)
                      .+.-- -.++.+-.-.+-..|+++ =.+-||++|.+-.++ |+..-++.|+
T Consensus       211 sskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER~I~M~~lr~  259 (433)
T PRK15475        211 SGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTETERKIRMVQLRT  259 (433)
T ss_pred             Hhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHhCccCCCCCC
Confidence            55432 223332222222344444 666889999876443 3333334443

>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional

Probab=84.18  E-value=1.3  Score=46.99  Aligned_cols=125  Identities=12%  Similarity=0.118  Sum_probs=70.9

Q ss_pred             hhHhhhhHHHHHHhhhccccccccch-hhHHHHHHHHHHHHHHHHHHHHhHh--hhCCCHHHHHHHHHHhhhhhhHHHHH
Q 036516          250 FTSGFLLPVFCAISGIRMELYLINEK-SFIKIEFIILMSYLGKFTGVMVPSL--FFGMSFLKASCLALIMCCRGIAEIAV  326 (709)
Q Consensus       250 ~~~~~flPlFF~~~G~~~d~~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~--~~~~~~~~~~~lg~~m~~kG~~~l~~  326 (709)
                      +.++++=|+.|.-+|..+|++-+... ...+.....=.+++.-++++.....  ..+++.+|+-.+|.+=..-|-..+.+
T Consensus       131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfv  210 (433)
T PRK15477        131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYL  210 (433)
T ss_pred             HhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHh
Confidence            34678888999999999999876533 1111111222222222232222211  13789999999999888888887776


Q ss_pred             HHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCcc-ccccchhhcc
Q 036516          327 YCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPS-RRYKLDVRRA  376 (709)
Q Consensus       327 ~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p~-~~~~~~~~r~  376 (709)
                      .+.-- -.++.+-.-.+-..|+++ =.+-||++|.+-.++ |+..-++.|+
T Consensus       211 sskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER~I~M~~lr~  259 (433)
T PRK15477        211 SGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTEKERKIRMVQLRT  259 (433)
T ss_pred             Hhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHhCccCCCCCC
Confidence            55432 223332222222334444 666889998876443 3333234443

>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional

Probab=84.17  E-value=1.3  Score=46.98  Aligned_cols=125  Identities=12%  Similarity=0.118  Sum_probs=71.0

Q ss_pred             hhHhhhhHHHHHHhhhccccccccch-hhHHHHHHHHHHHHHHHHHHHHhHh--hhCCCHHHHHHHHHHhhhhhhHHHHH
Q 036516          250 FTSGFLLPVFCAISGIRMELYLINEK-SFIKIEFIILMSYLGKFTGVMVPSL--FFGMSFLKASCLALIMCCRGIAEIAV  326 (709)
Q Consensus       250 ~~~~~flPlFF~~~G~~~d~~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~--~~~~~~~~~~~lg~~m~~kG~~~l~~  326 (709)
                      +.++++=|+.|.-+|..+|++-+... ...+.....=.+++.-++++.....  ..+++.+|+-.+|.+=..-|-..+.+
T Consensus       131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfv  210 (433)
T PRK15476        131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYL  210 (433)
T ss_pred             HhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHh
Confidence            34678889999999999999876533 1111111222222222232222211  13789999999999888888887776


Q ss_pred             HHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCcc-ccccchhhcc
Q 036516          327 YCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPS-RRYKLDVRRA  376 (709)
Q Consensus       327 ~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p~-~~~~~~~~r~  376 (709)
                      .+.-- -.++.+-.-.+-..|+++ =.+-||++|.+-.++ |+..-++.|+
T Consensus       211 sskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER~I~M~~lr~  259 (433)
T PRK15476        211 SGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTEKERKIRMVQLRT  259 (433)
T ss_pred             Hhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHhCccCCCCCC
Confidence            55432 223332222222334444 666889998876443 3333234443

>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain

Probab=83.39  E-value=7  Score=38.12  Aligned_cols=37  Identities=16%  Similarity=0.196  Sum_probs=32.7

Q ss_pred             EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeee
Q 036516          554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFIT  590 (709)
Q Consensus       554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~  590 (709)
                      ||++.+.||.|+--++.++.+.++..+.+++++++..
T Consensus         1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~   37 (189)
T TIGR02432         1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDH   37 (189)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4889999999999999999999888778899999864

The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=83.07  E-value=66  Score=35.55  Aligned_cols=114  Identities=12%  Similarity=0.019  Sum_probs=66.8

Q ss_pred             HhhhhHHHHHHhhhccccccccch--hhHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHHHHHHHHhhhhhhHHHHHHHh
Q 036516          252 SGFLLPVFCAISGIRMELYLINEK--SFIKIEFIILMSYLGKFTGVMVPSLFFGMSFLKASCLALIMCCRGIAEIAVYCM  329 (709)
Q Consensus       252 ~~~flPlFF~~~G~~~d~~~l~~~--~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~  329 (709)
                      .++|+-+||+.+|+..++..+...  .......+..+..++..+.....+..++++..=++..|-.--.-|+-......-
T Consensus        66 ~~~lm~~fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~gsi~~~GGHGTAaA~g~  145 (398)
T TIGR00210        66 RDPLMLIFFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLGQAPLMGLLAGSITLSGGHGTGAAWSP  145 (398)
T ss_pred             HHHHHHHHHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCccCCCCCcHHHHHHH
Confidence            467888999999999998877644  222223333345566777666777888999887766432222333333333222


Q ss_pred             hh-c-cCccchhHHHH--HHHHHHHHHHHHHHHHHhhcCc
Q 036516          330 WK-D-RKIITNQIFAI--MITNMVIITGISTTIVGYLYDP  365 (709)
Q Consensus       330 ~~-~-~~~i~~~~~~~--lv~~~ll~t~i~~plv~~ly~p  365 (709)
                      .. + .|+-+.....+  -.+-.+..+.+..|+.+++.|.
T Consensus       146 ~f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi~~~lirk  185 (398)
T TIGR00210       146 VFYDNYGFRNATEIAIACATFGLVFGGIIGGPVAKFLIIR  185 (398)
T ss_pred             HHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            23 3 46554443332  2233345566678999986643

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=82.80  E-value=5.1  Score=46.41  Aligned_cols=85  Identities=18%  Similarity=0.253  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcChHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHH-H
Q 036516           25 RYVLRTFAEFGMILHAFVLGVQIDLGLV---KHIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASV-V  100 (709)
Q Consensus        25 ~~~l~~la~iGli~~lF~~Gle~d~~~l---~~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~-~  100 (709)
                      ......+.++|+.+|++.+|++--++.+   ++.+.+...+|.+-.++|.++++.+++++.+..        .....| +
T Consensus       443 ~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~G~~  514 (562)
T TIGR03802       443 SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLIITMLIGKYVLKYD--------PALLLGAL  514 (562)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHh
Confidence            4566779999999999999998887655   556666667777777788877777775444432        233444 4


Q ss_pred             HHhhchHHHHHHHHHHh
Q 036516          101 VNSMTSLVVITGLLKEL  117 (709)
Q Consensus       101 ~ls~Ts~~vv~~iL~el  117 (709)
                      +=+.|++|.+.-..+..
T Consensus       515 aG~~t~t~~l~~a~~~~  531 (562)
T TIGR03802       515 AGARTATPALGAVLERA  531 (562)
T ss_pred             hccCCCcHHHHHHHHhc
Confidence            45678888887665543

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=82.70  E-value=0.49  Score=51.88  Aligned_cols=111  Identities=19%  Similarity=0.298  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHhchhHhHHHHHHHHhcCCCCChh--hHHHhhhhhhhHhhhhHHHHHHhhhccccccccchhhHHHHHHH
Q 036516          207 IVLVTTILGTLVGQNSILTAFFFGLCLPDGPPLG--TQLVQKLDFFTSGFLLPVFCAISGIRMELYLINEKSFIKIEFII  284 (709)
Q Consensus       207 ~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~~~~--~~l~~kl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii  284 (709)
                      .+++...+.+.++++.++|-.++|+++...+ ++  +.-.+.++.+ ..+.+++.....|+++|...+... +.....+.
T Consensus         7 ~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~-~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~~-~~~~~~~~   83 (380)
T PF00999_consen    7 LAFVAGILFRRLGIPSIIGYILVGIVLGPSG-LGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRRN-WRRALALG   83 (380)
T ss_dssp             ------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG--------------
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHheeehhhhh-hhhccchhhHHHHH-HHHHHHHHHHHHHHhhcccccccc-cccccccc
Confidence            3444445688899999999999999998753 22  1112344444 677788888889999999887654 33333333


Q ss_pred             HHHHHHHHHH-HHHhHh---hhCCCHHHHHHHHHHhhhhh
Q 036516          285 LMSYLGKFTG-VMVPSL---FFGMSFLKASCLALIMCCRG  320 (709)
Q Consensus       285 ~~~~~~K~~~-~~l~~~---~~~~~~~~~~~lg~~m~~kG  320 (709)
                      +..++.-++. ++....   ..++++.+++.+|..+++-.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts  123 (380)
T PF00999_consen   84 LVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS  123 (380)
T ss_dssp             ------------------------------TTHHHHTT--
T ss_pred             cceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence            3333334444 444443   46889999998888776554

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>PRK03818 putative transporter; Validated

Probab=81.22  E-value=18  Score=41.77  Aligned_cols=84  Identities=15%  Similarity=0.192  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcChHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHH-H
Q 036516           25 RYVLRTFAEFGMILHAFVLGVQIDLGLVK---HIRKRAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASV-V  100 (709)
Q Consensus        25 ~~~l~~la~iGli~~lF~~Gle~d~~~l~---~~~~~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~-~  100 (709)
                      ......+.++|+.+|+|.+|++--++.+.   +.+.+-..+++.-.++|.++++.+.+++...         .....| .
T Consensus        56 ~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~G~~  126 (552)
T PRK03818         56 SDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIP---------LPVMLGIF  126 (552)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------HHHHHHHh
Confidence            45677799999999999999999987664   4555666666666666777766654443321         123333 3


Q ss_pred             HHhhchHHHHHHHHHHh
Q 036516          101 VNSMTSLVVITGLLKEL  117 (709)
Q Consensus       101 ~ls~Ts~~vv~~iL~el  117 (709)
                      +=+.|++|.+....+..
T Consensus       127 aGa~T~tp~l~aa~~~~  143 (552)
T PRK03818        127 SGAVTNTPALGAGQQIL  143 (552)
T ss_pred             hccccccHHHHHHHHHH
Confidence            44678888887765544

>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit

Probab=80.84  E-value=4.5  Score=42.49  Aligned_cols=112  Identities=13%  Similarity=0.089  Sum_probs=66.5

Q ss_pred             hhHhhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhhCC------CHHHHHHHHHHhhhhhhHH
Q 036516          250 FTSGFLLPVFCAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFFGM------SFLKASCLALIMCCRGIAE  323 (709)
Q Consensus       250 ~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~------~~~~~~~lg~~m~~kG~~~  323 (709)
                      +.++++=|+-|.-+|..+|++-+......  .++-..+=+| +..+++.+...|+      +.+|+-.+|.+=..-|-..
T Consensus        60 i~~~l~P~LIFlGIGAmtDFgpllanP~~--~llGaaAQ~G-iF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~  136 (354)
T TIGR01109        60 IGSGIAPLLIFMGIGALTDFGPLLANPRT--LLLGAAAQFG-IFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTA  136 (354)
T ss_pred             HhcchHHHHHHHhccHHhhhHHHHhChHH--HHHHHHHHhh-HHHHHHHHHHhCCCcccccChhhceeeeeeccCCCchh
Confidence            45788899999999999999876543221  1111111121 2334455555666      7799999998877778777


Q ss_pred             HHHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 036516          324 IAVYCMWKDRKIITNQIFAIMITNMVIITGISTTIVGYLYDPS  366 (709)
Q Consensus       324 l~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~plv~~ly~p~  366 (709)
                      +.+.+.-. -.++.+-.-.+-.-|+++ =.+-||++|.+-.++
T Consensus       137 If~s~~la-p~Llg~IaVAAYsYMaLv-PiiqPpimklLttkk  177 (354)
T TIGR01109       137 IYLSGKLA-PELLAAIAVAAYSYMALV-PIIQPPIMKALTSEK  177 (354)
T ss_pred             hhhHhhhh-hHHHHHHHHHHHHHHHHH-hcccchHHHhhcChH
Confidence            66654322 222222222222233444 566789998876443

This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.

>PRK05253 sulfate adenylyltransferase subunit 2; Provisional

Probab=80.76  E-value=7  Score=41.42  Aligned_cols=40  Identities=20%  Similarity=0.167  Sum_probs=31.7

Q ss_pred             EEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCC
Q 036516          554 HIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ  593 (709)
Q Consensus       554 ~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~  593 (709)
                      ++++.|.||+|+--.|.++++.-...+..+.++++.+..+
T Consensus        29 ~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~   68 (301)
T PRK05253         29 NPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWK   68 (301)
T ss_pred             CEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCC
Confidence            4889999999999999999887554456678888876443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	709
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 5e-07
 Identities = 70/442 (15%), Positives = 135/442 (30%), Gaps = 131/442 (29%)

Query: 361 YLYDPSRRYKLDVRRAICKSKQNSLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVL 420
           ++ +   +   D+ ++I   ++    I++          L   L          +  FV 
Sbjct: 29  FVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQ---EEMVQKFVE 84

Query: 421 QLMELKGSVTAFLK-PHHQQTKSEAASSTQLINAFTQFQRCYY-GHVVVQHFTT-IAPYA 477
           +++ +      FL  P   + +  +  +   I    Q  R Y    V  ++  + + PY 
Sbjct: 85  EVLRIN---YKFLMSPIKTEQRQPSMMTRMYI---EQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 478 TMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRAL-NRNVLHKAPCSVGIL-V 535
            +   +  L   K V+I         GV G  ++  +++    +  V  K      I  +
Sbjct: 139 KLRQALLELRPAKNVLI-----D---GVLGSGKTW-VALDVCLSYKVQCKMDF--KIFWL 187

Query: 536 HRGQNKSNRPVYTG--ELLYHIVMLFIGGADDREALAYS--------RRM---AEHPNTS 582
           +     S   V     +LLY I   +   +D    +           RR+     + N  
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-C 246

Query: 583 LTV---VW-------F-------ITT-DQN-------RPSTEMPDDHELDNQAFDEFKD- 616
           L V   V        F       +TT  +          +T +  DH       DE K  
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 617 ------------------------SMVGNKIIFREEIVKDGIGT------------TQVI 640
                                   S++        E ++DG+ T            T +I
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIA-------ESIRDGLATWDNWKHVNCDKLTTII 359

Query: 641 QAFAETF----------DLFIVGKNHD-PCCKATLGLSEW--IEYPELGILGDTLVNSND 687
           ++                L +   +   P     L L  W  +   ++ ++ + L     
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIP--TILLSLI-WFDVIKSDVMVVVNKLHKY-- 414

Query: 688 EFSVLVVQQQPKESRHELKSIQ 709
                +V++QPKES   + SI 
Sbjct: 415 ----SLVEKQPKESTISIPSIY 432

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	709
1zcd_A	388	Na(+)/H(+) antiporter 1; membrane protein; 3.45A {	99.93
3mt0_A	290	Uncharacterized protein PA1789; structural genomic	99.76
3olq_A	319	Universal stress protein E; structural genomics, P	99.75
3loq_A	294	Universal stress protein; structural genomics, PSI	99.74
3cis_A	309	Uncharacterized protein; alpha/beta hydrolase, ATP	99.73
3ab8_A	268	Putative uncharacterized protein TTHA0350; tandem-	99.71
3fdx_A	143	Putative filament protein / universal stress PROT;	99.33
1mjh_A	162	Protein (ATP-binding domain of protein MJ0577); hy	99.28
3s3t_A	146	Nucleotide-binding protein, universal stress PROT	99.27
3hgm_A	147	Universal stress protein TEAD; rossman fold, signa	99.25
2dum_A	170	Hypothetical protein PH0823; conserved hypothetica	99.24
3dlo_A	155	Universal stress protein; unknown function, struct	99.23
1tq8_A	163	Hypothetical protein RV1636; MTCY01B2.28, structur	99.21
2z08_A	137	Universal stress protein family; uncharacterized c	99.2
3tnj_A	150	Universal stress protein (USP); structural genomic	99.19
2gm3_A	175	Unknown protein; AT3G01520, putative ethylene-resp	99.17
3fg9_A	156	Protein of universal stress protein USPA family; A	99.16
3idf_A	138	USP-like protein; universal, stress, PSI, MCSG, st	99.14
1jmv_A	141	USPA, universal stress protein A; chaperone; 1.85A	99.08
1q77_A	138	Hypothetical protein AQ_178; structural genomics,	98.96
3mt0_A	290	Uncharacterized protein PA1789; structural genomic	98.85
3olq_A	319	Universal stress protein E; structural genomics, P	98.85
3loq_A	294	Universal stress protein; structural genomics, PSI	98.7
3cis_A	309	Uncharacterized protein; alpha/beta hydrolase, ATP	98.57
3idf_A	138	USP-like protein; universal, stress, PSI, MCSG, st	98.21
3s3t_A	146	Nucleotide-binding protein, universal stress PROT	98.19
3ab8_A	268	Putative uncharacterized protein TTHA0350; tandem-	98.18
3dlo_A	155	Universal stress protein; unknown function, struct	98.12
3hgm_A	147	Universal stress protein TEAD; rossman fold, signa	98.04
2z08_A	137	Universal stress protein family; uncharacterized c	98.03
3tnj_A	150	Universal stress protein (USP); structural genomic	98.03
3fdx_A	143	Putative filament protein / universal stress PROT;	98.01
2dum_A	170	Hypothetical protein PH0823; conserved hypothetica	97.96
1mjh_A	162	Protein (ATP-binding domain of protein MJ0577); hy	97.95
3fg9_A	156	Protein of universal stress protein USPA family; A	97.91
1jmv_A	141	USPA, universal stress protein A; chaperone; 1.85A	97.88
1tq8_A	163	Hypothetical protein RV1636; MTCY01B2.28, structur	97.81
2gm3_A	175	Unknown protein; AT3G01520, putative ethylene-resp	97.59
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	97.49
1q77_A	138	Hypothetical protein AQ_178; structural genomics,	97.43
3g40_A	294	Na-K-CL cotransporter; alpha/beta fold 10-stranded	96.24

>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A

Probab=99.93  E-value=5.5e-26  Score=242.28  Aligned_cols=302  Identities=14%  Similarity=0.141  Sum_probs=216.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcChHHH----Hhhhh--hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhHHHHHHHH
Q 036516           27 VLRTFAEFGMILHAFVLGVQIDLGLV----KHIRK--RAVIIGITSTLLPLVFGLSSFRIVQRISHLDDETASSIAASVV  100 (709)
Q Consensus        27 ~l~~la~iGli~~lF~~Gle~d~~~l----~~~~~--~~~~i~~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~  100 (709)
                      ....+.+-.+.+|||.+|+|+|.+.+    ++.+|  .+...++.|+++|++++..    + ....      ........
T Consensus        59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~~----~-~~~~------~~~~~gw~  127 (388)
T 1zcd_A           59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLA----F-NYAD------PITREGWA  127 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----G-CCSS------TTHHHHTS
T ss_pred             HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH----H-hcCC------hhhhhhhH
Confidence            34556666677999999999999987    55555  3788899999999988422    2 2211      22345556


Q ss_pred             HHhhchHHHHHHHHHHhcccc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHHHH
Q 036516          101 VNSMTSLVVITGLLKELKMLN-SELGRLAASITIVSHIFGWSASMILLSVRDSQDNLTTIKPLYITLVVIVYYIIVIFLV  179 (709)
Q Consensus       101 ~ls~Ts~~vv~~iL~el~ll~-s~~G~lals~a~v~D~~~~~ll~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~  179 (709)
                      +.+.|+.+....++..++... +..++.+++.|++||+.+|++++++.+   ++  ....+    +...+++++...   
T Consensus       128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~--~~~~~----l~~~~~~~~~~~---  195 (388)
T 1zcd_A          128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND--LSMAS----LGVAAVAIAVLA---  195 (388)
T ss_dssp             SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC--CCHHH----HHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CC--ccHHH----HHHHHHHHHHHH---
Confidence            677799999999999987644 456699999999999999999998853   11  11112    222222222211   


Q ss_pred             HHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHhcCCCC----ChhhHHHhhhhhhhHhhh
Q 036516          180 RPLTMRIVSKNSEEESMNQNHFIITICIVLVTTILGTLVGQNSILTAFFFGLCLPDGP----PLGTQLVQKLDFFTSGFL  255 (709)
Q Consensus       180 r~~~~~i~~~~~~~~~~~e~~~~~vl~~~l~~~~~~~~~G~~~~lGaf~~Gl~ip~~~----~~~~~l~~kl~~~~~~~f  255 (709)
                           ++.|+.     +++...+.++ .+ .+.+.++..|+|+++|+|++|+++|..+    +..+++++++++++..++
T Consensus       196 -----~l~r~~-----v~~~~~y~~l-gl-~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~i  263 (388)
T 1zcd_A          196 -----VLNLCG-----ARRTGVYILV-GV-VLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLI  263 (388)
T ss_dssp             -----HHHHTT-----CCCTHHHHHH-HH-HHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTH
T ss_pred             -----HHHHhc-----chhHHHHHHH-HH-HHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHH
Confidence                 112221     1223334433 22 4456679999999999999999999853    357899999999999999


Q ss_pred             hHHH-HHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHhHhhh----------CCCHHHHHHHHHHhhhhhhHHH
Q 036516          256 LPVF-CAISGIRMELYLINEKSFIKIEFIILMSYLGKFTGVMVPSLFF----------GMSFLKASCLALIMCCRGIAEI  324 (709)
Q Consensus       256 lPlF-F~~~G~~~d~~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~l  324 (709)
                      +|+| |+..|+++|...+....-.....+++..++||++|++..++..          |++|+|...+|++++.++++++
T Consensus       264 lPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL  343 (388)
T 1zcd_A          264 LPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSI  343 (388)
T ss_dssp             HHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHH
T ss_pred             HHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHH
Confidence            9999 9999999997533211101112444555899999955555444          8999999999999999999999


Q ss_pred             HHHHhhhccCc--cchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 036516          325 AVYCMWKDRKI--ITNQIFAIMITNMVIITGISTTIVGYLY  363 (709)
Q Consensus       325 ~~~~~~~~~~~--i~~~~~~~lv~~~ll~t~i~~plv~~ly  363 (709)
                      ++++++++.+.  +.++.+..+++++++++.+.+.++++.+
T Consensus       344 ~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~  384 (388)
T 1zcd_A          344 FIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL  384 (388)
T ss_dssp             HHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred             HHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999998876  3567799999999997777777676544

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}

Probab=99.76  E-value=2.1e-17  Score=172.94  Aligned_cols=258  Identities=14%  Similarity=0.099  Sum_probs=172.7

Q ss_pred             ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcc
Q 036516          385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGH  464 (709)
Q Consensus       385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~  464 (709)
                      -|||||++++++...+++.+..++..  ...+++++|+++ +         .     ......++..+.++      ..+
T Consensus         8 ~~ILv~~D~s~~s~~al~~A~~la~~--~~a~l~ll~v~~-~---------~-----~~~~~l~~~~~~~~------~~~   64 (290)
T 3mt0_A            8 RSILVVIEPDQLEGLALKRAQLIAGV--TQSHLHLLVCEK-R---------R-----DHSAALNDLAQELR------EEG   64 (290)
T ss_dssp             CEEEEECCSSCSCCHHHHHHHHHHHH--HCCEEEEEEECS-S---------S-----CCHHHHHHHHHHHH------HTT
T ss_pred             ceEEEEeCCCccchHHHHHHHHHHHh--cCCeEEEEEeeC-c---------H-----HHHHHHHHHHHHHh------hCC
Confidence            58999999999999999999888843  446899999987 1         1     11112222222222      245


Q ss_pred             eEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCCCCCCC
Q 036516          465 VVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSNR  544 (709)
Q Consensus       465 v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~~~~~  544 (709)
                      ++++.....+  .+..+.|++.|+++++||||||+|++...++.      .+|++.+++++++||||.++......    
T Consensus        65 ~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~------~~gs~~~~vl~~~~~PVlvv~~~~~~----  132 (290)
T 3mt0_A           65 YSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKA------ILTPDDWKLLRFAPCPVLMTKTARPW----  132 (290)
T ss_dssp             CCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTT------SCCHHHHHHHHHCSSCEEEECCCSCS----
T ss_pred             CeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhc------ccCHHHHHHHhcCCCCEEEecCCCCC----
Confidence            7777766543  57999999999999999999999988655443      48999999999999999886422211    


Q ss_pred             cccCCCcceEEEEeeccCcC-------hHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCC-CC---chhHHHHHHHH
Q 036516          545 PVYTGELLYHIVMLFIGGAD-------DREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEM-PD---DHELDNQAFDE  613 (709)
Q Consensus       545 ~~~~~~~~~~V~~~f~Gg~d-------dreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~-~~---~~~~d~~~l~~  613 (709)
                            ...+|++++-|+++       ++.|+++|.++|+..+++++++|+.++........+ +.   .++..++.+++
T Consensus       133 ------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  206 (290)
T 3mt0_A          133 ------TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRT  206 (290)
T ss_dssp             ------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHH
T ss_pred             ------CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHH
Confidence                  23579999998888       799999999999999999999999873211000000 00   01223345555


Q ss_pred             HhhhcCC-C-cEEEEEEeecChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcce
Q 036516          614 FKDSMVG-N-KIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSV  691 (709)
Q Consensus       614 ~~~~~~~-~-~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~Sv  691 (709)
                      +..++.- . .....+..  -.+++.+.+++.  ++||+++|+++..      |+.+|    =+|-+.+-+... ..|+|
T Consensus       207 ~~~~~g~~~~~~~v~~g~--~~~~I~~~a~~~--~~dLiVmG~~g~~------~~~~~----~~Gsv~~~vl~~-~~~pV  271 (290)
T 3mt0_A          207 FQAEYGFSDEQLHIEEGP--ADVLIPRTAQKL--DAVVTVIGTVART------GLSGA----LIGNTAEVVLDT-LESDV  271 (290)
T ss_dssp             HHHHHTCCTTTEEEEESC--HHHHHHHHHHHH--TCSEEEEECCSSC------CGGGC----CSCHHHHHHHTT-CSSEE
T ss_pred             HHHHcCCCcceEEEeccC--HHHHHHHHHHhc--CCCEEEECCCCCc------CCcce----ecchHHHHHHhc-CCCCE
Confidence            5544321 1 22222211  123344555543  7999999998742      23333    388888888764 56799


Q ss_pred             EEEeecC
Q 036516          692 LVVQQQP  698 (709)
Q Consensus       692 Lvvqq~~  698 (709)
                      |||..+.
T Consensus       272 Lvv~~~~  278 (290)
T 3mt0_A          272 LVLKPDD  278 (290)
T ss_dssp             EEECCHH
T ss_pred             EEECCCC
Confidence            9998653

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}

Probab=99.75  E-value=1.4e-17  Score=176.46  Aligned_cols=279  Identities=12%  Similarity=0.084  Sum_probs=173.6

Q ss_pred             ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHh-cCc
Q 036516          385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRC-YYG  463 (709)
Q Consensus       385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~-~~~  463 (709)
                      -|||||++++++....++.+..++.  .....++++|+++......+-...............++..+.++++.+. ...
T Consensus         8 k~ILv~~D~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   85 (319)
T 3olq_A            8 QNLLVVIDPNQDDQPALRRAVYIVQ--RNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLEA   85 (319)
T ss_dssp             CEEEEECCTTCSCCHHHHHHHHHHH--HHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCcccHHHHHHHHHHHH--HcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5899999999999999999988884  3457999999986321110000000000000001111222233333221 135


Q ss_pred             ceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCCCCCC
Q 036516          464 HVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQNKSN  543 (709)
Q Consensus       464 ~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~~~~  543 (709)
                      +++++..+...  .+..+.|++.|+++++||||||+|++.+.++.      .+|++.++|++++||||.++.++...   
T Consensus        86 ~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~------~~Gs~~~~vl~~~~~PVlvv~~~~~~---  154 (319)
T 3olq_A           86 GIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSL------IFTPLDWQLLRKCPAPVWMVKDKEWP---  154 (319)
T ss_dssp             TCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSC------BCCHHHHHHHHHCSSCEEEEESSCCC---
T ss_pred             CCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhhcc------cccccHHHHHhcCCCCEEEecCcccc---
Confidence            68888776633  48999999999999999999999987655443      48999999999999999887543211   


Q ss_pred             CcccCCCcceEEEEeeccCcC-------hHHHHHHHHHHhcCC--CeEEEEEEeeecCCCCC-C--CCCCCc------hh
Q 036516          544 RPVYTGELLYHIVMLFIGGAD-------DREALAYSRRMAEHP--NTSLTVVWFITTDQNRP-S--TEMPDD------HE  605 (709)
Q Consensus       544 ~~~~~~~~~~~V~~~f~Gg~d-------dreAl~~a~rma~~~--~~~ltvl~v~~~~~~~~-~--~~~~~~------~~  605 (709)
                             ...+|++.+-|+++       ++.|+++|.++|+..  +++++++|+.++..... .  +..+.+      ++
T Consensus       155 -------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (319)
T 3olq_A          155 -------EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRG  227 (319)
T ss_dssp             -------TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHH
T ss_pred             -------cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHH
Confidence                   13579999998885       499999999999987  99999999987322100 0  001100      11


Q ss_pred             HHHHHHHHHhhhcCCC--cEEEEEEeecChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhh
Q 036516          606 LDNQAFDEFKDSMVGN--KIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLV  683 (709)
Q Consensus       606 ~d~~~l~~~~~~~~~~--~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~la  683 (709)
                      ..++.++++..++...  .....+...  .+++.+.+++  .++||++||+++..      |+.+|    =+|-+.+-+.
T Consensus       228 ~~~~~l~~~~~~~~~~~~~~~v~~g~~--~~~I~~~a~~--~~~dLiV~G~~g~~------~~~~~----~~Gsv~~~vl  293 (319)
T 3olq_A          228 QHLIAMKELRQKFSIPEEKTHVKEGLP--EQVIPQVCEE--LNAGIVVLGILGRT------GLSAA----FLGNTAEQLI  293 (319)
T ss_dssp             HHHHHHHHHHHHTTCCGGGEEEEESCH--HHHHHHHHHH--TTEEEEEEECCSCC------STHHH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccEEEecCCc--HHHHHHHHHH--hCCCEEEEeccCcc------CCccc----cccHHHHHHH
Confidence            2234555555444211  221111111  2334444443  37999999998642      22222    3788887777


Q ss_pred             cCCCCcceEEEeecC
Q 036516          684 NSNDEFSVLVVQQQP  698 (709)
Q Consensus       684 s~d~~~SvLvvqq~~  698 (709)
                      .. ..|+||||..+.
T Consensus       294 ~~-~~~pVLvv~~~~  307 (319)
T 3olq_A          294 DH-IKCDLLAIKPDG  307 (319)
T ss_dssp             TT-CCSEEEEECCTT
T ss_pred             hh-CCCCEEEECCCC
Confidence            64 567999998765

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}

Probab=99.74  E-value=2.8e-17  Score=172.20  Aligned_cols=264  Identities=11%  Similarity=0.078  Sum_probs=174.4

Q ss_pred             ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccc--cccchhchhHHHHHHHHHHHhcC
Q 036516          385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQ--TKSEAASSTQLINAFTQFQRCYY  462 (709)
Q Consensus       385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~--~~~~~~~~~~i~~af~~~~~~~~  462 (709)
                      -|||||++++++...+++.+..++.  ....+++++|+++.+...... ......  .+......++.++.+.+..+  .
T Consensus        23 ~~ILv~vD~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~   97 (294)
T 3loq_A           23 NAMLLPTDLSENSFKVLEYLGDFKK--VGVEEIGVLFVINLTKLSTVS-GGIDIDHYIDEMSEKAEEVLPEVAQKIE--A   97 (294)
T ss_dssp             CEEEEECCSCTGGGGGGGGHHHHHH--TTCCEEEEECCEECTTC------CCCTTHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred             ccEEEecCCCHHHHHHHHHHHHHHh--hcCCEEEEEEEecCccccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence            4899999999999999999988884  445899999999876422110 000000  00122333444554444433  2


Q ss_pred             cceEEEE-EEE-EccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCCC
Q 036516          463 GHVVVQH-FTT-IAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQN  540 (709)
Q Consensus       463 ~~v~v~~-~~~-vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~~  540 (709)
                      .+++++. .+. .+   +..+.|  .|+++++|+||||.|++.+..+      ..+|++.++|++++||||.|+.+....
T Consensus        98 ~g~~~~~~~v~~~g---~~~~~I--~a~~~~~DliV~G~~g~~~~~~------~~~Gs~~~~vl~~~~~PVlvv~~~~~~  166 (294)
T 3loq_A           98 AGIKAEVIKPFPAG---DPVVEI--IKASENYSFIAMGSRGASKFKK------ILLGSVSEGVLHDSKVPVYIFKHDMVV  166 (294)
T ss_dssp             TTCEEEECSSCCEE---CHHHHH--HHHHTTSSEEEEECCCCCHHHH------HHHCCHHHHHHHHCSSCEEEECCCTTT
T ss_pred             cCCCcceeEeeccC---ChhHhe--eeccCCCCEEEEcCCCCccccc------eeeccHHHHHHhcCCCCEEEecCcccc
Confidence            4677776 444 44   889999  9999999999999998754332      257999999999999999886443221


Q ss_pred             CCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCC
Q 036516          541 KSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVG  620 (709)
Q Consensus       541 ~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~  620 (709)
                      .        ....+|++++-|++++++|+++|.++++..+++++++++.++..         .++..+++.+.++.... 
T Consensus       167 ~--------~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~---------~~~~l~~~~~~l~~~~~-  228 (294)
T 3loq_A          167 N--------SLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD---------KTADLRVMEEVIGAEGI-  228 (294)
T ss_dssp             T--------CTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC---------CHHHHHHHHHHHHHTTC-
T ss_pred             C--------ccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch---------HHHHHHHHHHHHHHcCC-
Confidence            1        12358999999999999999999999999999999999975211         23334444444443322 


Q ss_pred             CcEEEEEEeecChhhHHHHHHhhh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEeecC
Q 036516          621 NKIIFREEIVKDGIGTTQVIQAFA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQP  698 (709)
Q Consensus       621 ~~v~y~e~~v~~g~~~~~~i~~~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq~~  698 (709)
                       .+.   ..+..| +..+.|.+..  .++||+++|+++..      ++.+|    -+|-+.+-+... ..++||||.+..
T Consensus       229 -~~~---~~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~------~~~~~----~~Gs~~~~vl~~-~~~pvLvv~~~~  292 (294)
T 3loq_A          229 -EVH---VHIESG-TPHKAILAKREEINATTIFMGSRGAG------SVMTM----ILGSTSESVIRR-SPVPVFVCKRGD  292 (294)
T ss_dssp             -CEE---EEEECS-CHHHHHHHHHHHTTCSEEEEECCCCS------CHHHH----HHHCHHHHHHHH-CSSCEEEECSCT
T ss_pred             -cEE---EEEecC-CHHHHHHHHHHhcCcCEEEEeCCCCC------Cccce----eeCcHHHHHHhc-CCCCEEEECCCC
Confidence             222   223333 3444443333  37999999998742      22222    367777766653 556999998764

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*

Probab=99.73  E-value=9.1e-17  Score=169.63  Aligned_cols=279  Identities=14%  Similarity=0.111  Sum_probs=174.7

Q ss_pred             cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccc-cccCccccccchhchhHHHHHHHHHHHhc-
Q 036516          384 SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAF-LKPHHQQTKSEAASSTQLINAFTQFQRCY-  461 (709)
Q Consensus       384 e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~-~~~~~~~~~~~~~~~~~i~~af~~~~~~~-  461 (709)
                      --|||||++++++...+++.+..++.  ....+++++|+++......+. ..+.+.. +......++.++.+.+..+.. 
T Consensus        19 ~~~ILv~~D~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~   95 (309)
T 3cis_A           19 SLGIIVGIDDSPAAQVAVRWAARDAE--LRKIPLTLVHAVSPEVATWLEVPLPPGVL-RWQQDHGRHLIDDALKVVEQAS   95 (309)
T ss_dssp             TTEEEEECCSSHHHHHHHHHHHHHHH--HHTCCEEEEEECCCCCCCTTCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCHHHHHHHHHHHHHHH--hcCCcEEEEEEecCcccccccCCCCchhh-HHHHHHHHHHHHHHHHHHHHhc
Confidence            46899999999999999999888874  334689999999722111010 0000000 011222333444433332221 


Q ss_pred             --CcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecCC
Q 036516          462 --YGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRGQ  539 (709)
Q Consensus       462 --~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg~  539 (709)
                        ..+++++..+..+   +..+.|++.|+  ++|+||||.|++.+..+.      .+|++.++|++++||||.|+..+..
T Consensus        96 ~~~~~~~~~~~~~~g---~~~~~I~~~a~--~~DliV~G~~g~~~~~~~------~~Gs~~~~vl~~~~~PVlvv~~~~~  164 (309)
T 3cis_A           96 LRAGPPTVHSEIVPA---AAVPTLVDMSK--DAVLMVVGCLGSGRWPGR------LLGSVSSGLLRHAHCPVVIIHDEDS  164 (309)
T ss_dssp             SSSCCSCEEEEEESS---CHHHHHHHHGG--GEEEEEEESSCTTCCTTC------CSCHHHHHHHHHCSSCEEEECTTCC
T ss_pred             ccCCCceEEEEEecC---CHHHHHHHHhc--CCCEEEECCCCCcccccc------ccCcHHHHHHHhCCCCEEEEcCCcc
Confidence              1257777765544   89999999996  899999999987665443      4899999999999999988654332


Q ss_pred             CCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCc--hhHHHHHHHHHh--
Q 036516          540 NKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDD--HELDNQAFDEFK--  615 (709)
Q Consensus       540 ~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~--~~~d~~~l~~~~--  615 (709)
                      ..      ......+|++.+-|++.++.|+++|.++|+..+++++++++.++......+....+  ++..++.+++..  
T Consensus       165 ~~------~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  238 (309)
T 3cis_A          165 VM------PHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAG  238 (309)
T ss_dssp             CS------CSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred             cC------CCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHH
Confidence            10      01123479999999999999999999999999999999999863221000011111  112223344333  


Q ss_pred             --hhcCCCcEEEEEEeecChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEE
Q 036516          616 --DSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLV  693 (709)
Q Consensus       616 --~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLv  693 (709)
                        .++.+-.+.+   .+..| +..+.|.+.++++||++||+++..      ++.+|    -+|-+.+-+... ..++|||
T Consensus       239 ~~~~~~~~~~~~---~~~~g-~~~~~I~~~a~~adliV~G~~~~~------~~~~~----l~Gsv~~~vl~~-~~~pVlv  303 (309)
T 3cis_A          239 WQERYPNVAITR---VVVRD-QPARQLVQRSEEAQLVVVGSRGRG------GYAGM----LVGSVGETVAQL-ARTPVIV  303 (309)
T ss_dssp             HHHHCTTSCEEE---EEESS-CHHHHHHHHHTTCSEEEEESSCSS------CCTTC----SSCHHHHHHHHH-CSSCEEE
T ss_pred             HHhhCCCCcEEE---EEEcC-CHHHHHHHhhCCCCEEEECCCCCC------Ccccc----ccCcHHHHHHhc-CCCCEEE
Confidence              2222113322   23344 355666555668999999998742      22222    378777776653 4569999


Q ss_pred             Eeec
Q 036516          694 VQQQ  697 (709)
Q Consensus       694 vqq~  697 (709)
                      |..+
T Consensus       304 v~~~  307 (309)
T 3cis_A          304 ARES  307 (309)
T ss_dssp             ECC-
T ss_pred             eCCC
Confidence            9753

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*

Probab=99.71  E-value=1.3e-16  Score=164.75  Aligned_cols=255  Identities=14%  Similarity=0.094  Sum_probs=166.5

Q ss_pred             eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCcc--cccc---Cccc------cccchhchhHHHHHH
Q 036516          386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTA--FLKP---HHQQ------TKSEAASSTQLINAF  454 (709)
Q Consensus       386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~--~~~~---~~~~------~~~~~~~~~~i~~af  454 (709)
                      |||+|++++++...+++.+..++.  ....+++++|+++.+....+  ....   .+..      .+......++.++.+
T Consensus         2 ~ILv~vD~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   79 (268)
T 3ab8_A            2 RILLATDGSPQARGAEALAEWLAY--KLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV   79 (268)
T ss_dssp             CEEEECCSCGGGHHHHHHHHHHHH--HHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEcCCCHHHHHHHHHHHHHHH--HhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999988874  33478999999986421100  0000   0000      001112233444444


Q ss_pred             HHHHHhcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccc-cCCcceeccchhhHHHHHHHhhcCCccEEE
Q 036516          455 TQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQW-GVGGILESTDLSIRALNRNVLHKAPCSVGI  533 (709)
Q Consensus       455 ~~~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~-~~~g~~~~~~~~~~~~~~~Vl~~apCsVgI  533 (709)
                      .+..+  ..+++++..+..+   +..+.|++.  ++++|+||||.|++. +..+.      .+|++.++|++++||||.+
T Consensus        80 ~~~~~--~~g~~~~~~~~~g---~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~------~~Gs~~~~v~~~a~~PVlv  146 (268)
T 3ab8_A           80 RQSAL--AAGVAVEAVLEEG---VPHEAILRR--ARAADLLVLGRSGEAHGDGFG------GLGSTADRVLRASPVPVLL  146 (268)
T ss_dssp             HHHHH--HTTCCEEEEEEEE---CHHHHHHHH--HTTCSEEEEESSCTTSCTTCC------SCCHHHHHHHHHCSSCEEE
T ss_pred             HHHHH--hCCCCeEEEEecC---CHHHHHHhh--ccCCCEEEEeccCCCcccccc------ccchhHHHHHHhCCCCEEE
Confidence            44332  2457777766655   899999999  899999999999876 55443      4899999999999999987


Q ss_pred             EEecCCCCCCCcccCCCcceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHH
Q 036516          534 LVHRGQNKSNRPVYTGELLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDE  613 (709)
Q Consensus       534 lvdrg~~~~~~~~~~~~~~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~  613 (709)
                      +..+..           ...+|++++-|+++++.|+++|.++++..+++++++|+.++.+        ..++..++..+.
T Consensus       147 v~~~~~-----------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~--------~~~~~l~~~~~~  207 (268)
T 3ab8_A          147 APGEPV-----------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA--------RAEAWALEAEAY  207 (268)
T ss_dssp             ECSSCC-----------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH--------HHHHHHHHHHHH
T ss_pred             ECCCCC-----------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH--------HHHHHHHHHHHH
Confidence            643221           1247999999999999999999999999999999999875210        112222233333


Q ss_pred             HhhhcCCCcEEEEEEeecChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEE
Q 036516          614 FKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLV  693 (709)
Q Consensus       614 ~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLv  693 (709)
                      +.....  .+.   ..+..| +..+.|.+..+++||+++|+          |+.+|    =+|-+.+-+... .+++|||
T Consensus       208 l~~~~~--~~~---~~~~~g-~~~~~i~~~a~~~dliV~G~----------~~~~~----~~Gs~~~~vl~~-~~~pvlv  266 (268)
T 3ab8_A          208 LRDHGV--EAS---ALVLGG-DAADHLLRLQGPGDLLALGA----------PVRRL----VFGSTAERVIRN-AQGPVLT  266 (268)
T ss_dssp             HHHTTC--CEE---EEEECS-CHHHHHHHHCCTTEEEEEEC----------CCSCC----SSCCHHHHHHHH-CSSCEEE
T ss_pred             HHHcCC--ceE---EEEeCC-ChHHHHHHHHHhCCEEEECC----------ccccc----EeccHHHHHHhc-CCCCEEE
Confidence            332211  332   222344 35566666665569999998          33333    367777766653 4568888


Q ss_pred             Ee
Q 036516          694 VQ  695 (709)
Q Consensus       694 vq  695 (709)
                      |.
T Consensus       267 v~  268 (268)
T 3ab8_A          267 AR  268 (268)
T ss_dssp             EC
T ss_pred             eC
Confidence            73

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*

Probab=99.33  E-value=4.1e-12  Score=117.54  Aligned_cols=138  Identities=13%  Similarity=0.116  Sum_probs=94.8

Q ss_pred             ceeEEEeccCCC--hHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhc-
Q 036516          385 LRILVCIHKEQN--VNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCY-  461 (709)
Q Consensus       385 ~riLv~v~~~~~--~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-  461 (709)
                      -|||+|++++++  ...+++.+..++.  ....+++++|+++.+....+.........+......++..+.++++.+.. 
T Consensus         2 k~ILv~vD~s~~~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (143)
T 3fdx_A            2 NAILVPIDISDKEFTERIISHVESEAR--IDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFS   79 (143)
T ss_dssp             CEEEEECCTTCSSCCTTHHHHHHHHHH--HHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSC
T ss_pred             CEEEEEecCChHhhHHHHHHHHHHHHH--hcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcC
Confidence            489999999999  9999999888873  34579999999987532211111000000112233455666677665433 


Q ss_pred             CcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516          462 YGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL  534 (709)
Q Consensus       462 ~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl  534 (709)
                      ..++.++..+..+   +..+.|++.|+++++|+||||.|+ .+..+.      .+|++.++|++++||||.|+
T Consensus        80 ~~~~~v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~------~~Gs~~~~v~~~~~~pVlvv  142 (143)
T 3fdx_A           80 IPEDRMHFHVAEG---SPKDKILALAKSLPADLVIIASHR-PDITTY------LLGSNAAAVVRHAECSVLVV  142 (143)
T ss_dssp             CCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEEESSC-TTCCSC------SSCHHHHHHHHHCSSEEEEE
T ss_pred             CCCCceEEEEEec---ChHHHHHHHHHHhCCCEEEEeCCC-CCCeee------eeccHHHHHHHhCCCCEEEe
Confidence            2345667766666   899999999999999999999995 443332      58999999999999999875

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4

Probab=99.28  E-value=2.8e-11  Score=114.49  Aligned_cols=138  Identities=13%  Similarity=0.166  Sum_probs=95.1

Q ss_pred             ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccC----CCcccc-----c-cCc---c--ccccchhchhH
Q 036516          385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKG----SVTAFL-----K-PHH---Q--QTKSEAASSTQ  449 (709)
Q Consensus       385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~----~~~~~~-----~-~~~---~--~~~~~~~~~~~  449 (709)
                      -|||+|++.+++...+++.+..++.  ....+++++|+++...    ...+..     . +..   .  ..+......++
T Consensus         6 ~~ILv~vD~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (162)
T 1mjh_A            6 KKILYPTDFSETAEIALKHVKAFKT--LKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN   83 (162)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHTCC--SSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHHh--hcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence            4899999999999999999999984  3457999999998541    100110     0 110   0  00011122233


Q ss_pred             HHHHHHHHHHhcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCc
Q 036516          450 LINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPC  529 (709)
Q Consensus       450 i~~af~~~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apC  529 (709)
                      .++.+.+..+  ..+++++..+..+   +..+.|++.|+++++|+||||.|++.+..+.      .+|++.++|++++||
T Consensus        84 ~l~~~~~~~~--~~g~~~~~~v~~G---~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~------~~GSv~~~vl~~~~~  152 (162)
T 1mjh_A           84 KMENIKKELE--DVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEI------LLGSVTENVIKKSNK  152 (162)
T ss_dssp             HHHHHHHHHH--HTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTC------SSCHHHHHHHHHCCS
T ss_pred             HHHHHHHHHH--HcCCceEEEEcCC---CHHHHHHHHHHHcCCCEEEEcCCCCCCccce------EecchHHHHHHhCCC
Confidence            3333333222  2457777766666   8999999999999999999999988765443      489999999999999


Q ss_pred             cEEEEE
Q 036516          530 SVGILV  535 (709)
Q Consensus       530 sVgIlv  535 (709)
                      ||.|+.
T Consensus       153 pVlvv~  158 (162)
T 1mjh_A          153 PVLVVK  158 (162)
T ss_dssp             CEEEEC
T ss_pred             CEEEEe
Confidence            998864

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0

Probab=99.27  E-value=1.1e-11  Score=115.12  Aligned_cols=136  Identities=13%  Similarity=0.108  Sum_probs=97.0

Q ss_pred             ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCcccc--ccCccccccchhchhHHHHHHHHHHHhcC
Q 036516          385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFL--KPHHQQTKSEAASSTQLINAFTQFQRCYY  462 (709)
Q Consensus       385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~--~~~~~~~~~~~~~~~~i~~af~~~~~~~~  462 (709)
                      -|||||++.+++...+++.+..++.  ....+++++|+++.+.......  ...+. .+......++.++.+.+..+  .
T Consensus         6 ~~ILv~~D~s~~s~~al~~A~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~--~   80 (146)
T 3s3t_A            6 TNILVPVDSSDAAQAAFTEAVNIAQ--RHQANLTALYVVDDSAYHTPALDPVLSEL-LDAEAAHAKDAMRQRQQFVA--T   80 (146)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHH--HHTCEEEEEEEEECCCCCCGGGHHHHHHH-HHHHHHHHHHHHHHHHHHHT--T
T ss_pred             ceEEEEcCCCHHHHHHHHHHHHHHH--hcCCEEEEEEEecCccccccccccccHHH-HHHHHHHHHHHHHHHHHHHH--h
Confidence            4899999999999999999988884  3357999999998764321110  00000 00122233344444444322  3


Q ss_pred             cce-EEEEEEEEccCCChhHHHHH-HHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516          463 GHV-VVQHFTTIAPYATMHDDVCT-LALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL  534 (709)
Q Consensus       463 ~~v-~v~~~~~vs~~~~~~~dI~~-~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl  534 (709)
                      .++ .++..+..+   +..+.|++ .|++.++||||||.|++.+..+.      .+|++.++|++++||||.|+
T Consensus        81 ~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~------~~Gs~~~~vl~~~~~pVlvV  145 (146)
T 3s3t_A           81 TSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRV------AVGSTTSYVVDHAPCNVIVI  145 (146)
T ss_dssp             SSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTC------SSCHHHHHHHHHCSSEEEEE
T ss_pred             cCCcceEEEEecC---ChHHHHHHHHHhhcCCCEEEECCCCCCCcceE------EEcchHHHHhccCCCCEEEe
Confidence            457 777777777   89999999 99999999999999988765543      48999999999999999875

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0

Probab=99.25  E-value=9.2e-12  Score=115.61  Aligned_cols=135  Identities=11%  Similarity=0.094  Sum_probs=95.1

Q ss_pred             eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccc--cccCccc---cccchhchhHHHHHHHHHHHh
Q 036516          386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAF--LKPHHQQ---TKSEAASSTQLINAFTQFQRC  460 (709)
Q Consensus       386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~--~~~~~~~---~~~~~~~~~~i~~af~~~~~~  460 (709)
                      |||+|++.+++...+++.+..++.  ....+++++|+++.+....+.  ..+....   .+......++.++.+.+..+.
T Consensus         4 ~ILv~vD~s~~s~~al~~A~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (147)
T 3hgm_A            4 RIMVPVDGSKGAVKALEKGVGLQQ--LTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE   81 (147)
T ss_dssp             EEEEECCSBHHHHHHHHHHHHHHH--HHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHHH--hcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            799999999999999999988874  335799999999865311000  0000000   011223445555555554332


Q ss_pred             cCcceEE---EEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEE
Q 036516          461 YYGHVVV---QHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGI  533 (709)
Q Consensus       461 ~~~~v~v---~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgI  533 (709)
                        .++++   +..+..+   +..+.|++.|+++++||||||.|++.+..+.      .+|++.++|++++||||.|
T Consensus        82 --~g~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~------~~Gs~~~~vl~~~~~pVlv  146 (147)
T 3hgm_A           82 --LGVPADKVRAFVKGG---RPSRTIVRFARKRECDLVVIGAQGTNGDKSL------LLGSVAQRVAGSAHCPVLV  146 (147)
T ss_dssp             --TTCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEECSSCTTCCSCC------CCCHHHHHHHHHCSSCEEE
T ss_pred             --cCCCccceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCccccce------eeccHHHHHHhhCCCCEEE
Confidence              34555   6655666   8999999999999999999999998665443      4899999999999999976

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}

Probab=99.24  E-value=4.6e-11  Score=114.05  Aligned_cols=140  Identities=11%  Similarity=0.084  Sum_probs=94.0

Q ss_pred             ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccc-ccc---------CccccccchhchhHHHHHH
Q 036516          385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAF-LKP---------HHQQTKSEAASSTQLINAF  454 (709)
Q Consensus       385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~-~~~---------~~~~~~~~~~~~~~i~~af  454 (709)
                      -|||||++.+++...+++.+..++.  ....+++++|+++........ ..+         .+...+......++.++.+
T Consensus         6 ~~ILv~vD~s~~s~~al~~A~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   83 (170)
T 2dum_A            6 RKVLFPTDFSEGAYRAVEVFEKRNK--MEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK   83 (170)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHHCC--SCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred             ceEEEEecCCHHHHHHHHHHHHHHH--hcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999984  445799999999854211000 000         0000001112233344443


Q ss_pred             HHHHHhcCcceEEEE--EEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEE
Q 036516          455 TQFQRCYYGHVVVQH--FTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVG  532 (709)
Q Consensus       455 ~~~~~~~~~~v~v~~--~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVg  532 (709)
                      .+..+.  .++.++.  .+..+   +..+.|++.|+++++||||||.|++.+..+.      .+|++.++|++++||||.
T Consensus        84 ~~~~~~--~g~~~~~~~~~~~g---~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~------~~Gsv~~~vl~~~~~PVl  152 (170)
T 2dum_A           84 AEEVKR--AFRAKNVRTIIRFG---IPWDEIVKVAEEENVSLIILPSRGKLSLSHE------FLGSTVMRVLRKTKKPVL  152 (170)
T ss_dssp             HHHHHH--HTTCSEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCCCC--TT------CCCHHHHHHHHHCSSCEE
T ss_pred             HHHHHH--cCCceeeeeEEecC---ChHHHHHHHHHHcCCCEEEECCCCCCccccc------eechHHHHHHHhCCCCEE
Confidence            333222  2455555  55555   8999999999999999999999987654433      489999999999999998


Q ss_pred             EEEec
Q 036516          533 ILVHR  537 (709)
Q Consensus       533 Ilvdr  537 (709)
                      |+..+
T Consensus       153 vv~~~  157 (170)
T 2dum_A          153 IIKEV  157 (170)
T ss_dssp             EECCC
T ss_pred             EEccC
Confidence            87544

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*

Probab=99.23  E-value=1.8e-11  Score=115.44  Aligned_cols=130  Identities=13%  Similarity=0.187  Sum_probs=94.1

Q ss_pred             cceeEEEecc-CCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcC
Q 036516          384 SLRILVCIHK-EQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYY  462 (709)
Q Consensus       384 e~riLv~v~~-~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~  462 (709)
                      --|||||++. +++...+++.+..++..  ...+++++|+++.+...      .    +......++.++.+.+..+.  
T Consensus        24 ~~~ILv~vD~~s~~s~~al~~A~~la~~--~~a~l~llhV~~~~~~~------~----~~~~~~~~~~l~~~~~~~~~--   89 (155)
T 3dlo_A           24 YMPIVVAVDKKSDRAERVLRFAAEEARL--RGVPVYVVHSLPGGGRT------K----DEDIIEAKETLSWAVSIIRK--   89 (155)
T ss_dssp             CCCEEEECCSSSHHHHHHHHHHHHHHHH--HTCCEEEEEEECCSTTS------C----HHHHHHHHHHHHHHHHHHHH--
T ss_pred             cCeEEEEECCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEEcCCCcc------c----HHHHHHHHHHHHHHHHHHHh--
Confidence            3589999999 99999999999888843  34689999999854321      0    11223344455544444332  


Q ss_pred             cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516          463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL  534 (709)
Q Consensus       463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl  534 (709)
                      .++.++..+.+. ..+..+.|++.|++.++||||||.|++.+..+.      .+|++.++|++++||||.|+
T Consensus        90 ~g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~------~lGSv~~~vl~~a~~PVLvV  154 (155)
T 3dlo_A           90 EGAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKL------IFGSVARDVILKANKPVICI  154 (155)
T ss_dssp             TTCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTTSCE------ECCHHHHHHHHHCSSCEEEE
T ss_pred             cCCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCE------EeccHHHHHHHhCCCCEEEe
Confidence            344554433331 248999999999999999999999998765543      48999999999999999875

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4

Probab=99.21  E-value=2.3e-11  Score=115.73  Aligned_cols=137  Identities=11%  Similarity=0.068  Sum_probs=92.5

Q ss_pred             cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEE--EeeeccCCCccccc-cCccccccchhchhHHHHHHHHHHHh
Q 036516          384 SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVL--QLMELKGSVTAFLK-PHHQQTKSEAASSTQLINAFTQFQRC  460 (709)
Q Consensus       384 e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~L--hlvel~~~~~~~~~-~~~~~~~~~~~~~~~i~~af~~~~~~  460 (709)
                      --|||||++.+++...+++.+..++.   ...+++++  |+++.+....+... ..+.. +......++.++.+.+..+ 
T Consensus        17 ~~~ILv~vD~s~~s~~al~~A~~lA~---~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-   91 (163)
T 1tq8_A           17 YKTVVVGTDGSDSSMRAVDRAAQIAG---ADAKLIIASAYLPQHEDARAADILKDESYK-VTGTAPIYEILHDAKERAH-   91 (163)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHHHHT---TTSEEEEEEECCC---------------------CCTHHHHHHHHHHHHH-
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHHhC---CCCEEEEEEeeeccCcccccccccccHHHH-HHHHHHHHHHHHHHHHHHH-
Confidence            46899999999999999999998885   45789999  88875432011100 00000 0122334455555444332 


Q ss_pred             cCcceE-EEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEE
Q 036516          461 YYGHVV-VQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILV  535 (709)
Q Consensus       461 ~~~~v~-v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlv  535 (709)
                       ..+++ ++..+..+   +..+.|++.|++.++||||||.|++.+..+      ..+|++.++|++++||||.|+.
T Consensus        92 -~~gv~~v~~~v~~G---~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~------~~lGSva~~vl~~a~~PVlvV~  157 (163)
T 1tq8_A           92 -NAGAKNVEERPIVG---APVDALVNLADEEKADLLVVGNVGLSTIAG------RLLGSVPANVSRRAKVDVLIVH  157 (163)
T ss_dssp             -TTTCCEEEEEEECS---SHHHHHHHHHHHTTCSEEEEECCCCCSHHH------HHTBBHHHHHHHHTTCEEEEEC
T ss_pred             -HcCCCeEEEEEecC---CHHHHHHHHHHhcCCCEEEECCCCCCcccc------eeeccHHHHHHHhCCCCEEEEe
Confidence             24566 77666555   899999999999999999999998765432      2589999999999999998864

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A

Probab=99.20  E-value=2.7e-11  Score=111.33  Aligned_cols=132  Identities=10%  Similarity=0.077  Sum_probs=88.3

Q ss_pred             eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcce
Q 036516          386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHV  465 (709)
Q Consensus       386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v  465 (709)
                      |||+|++++++...+++.+..++.  ....+++++|+++.......-..+.+.    .....++..+.++++.+.  .++
T Consensus         4 ~ILv~~D~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~--~g~   75 (137)
T 2z08_A            4 TILLAYDGSEHARRAAEVAKAEAE--AHGARLIVVHAYEPVPDYLGEPFFEEA----LRRRLERAEGVLEEARAL--TGV   75 (137)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHH--HHTCEEEEEEEECC------------------CHHHHHHHHHHHHHHHH--HCC
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHHh--hcCCEEEEEEEecCCCccccccchHHH----HHHHHHHHHHHHHHHHHH--cCC
Confidence            799999999999999999988873  335799999998732110000000000    011112333344444332  234


Q ss_pred             -EEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516          466 -VVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL  534 (709)
Q Consensus       466 -~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl  534 (709)
                       +++..+..+   +..+.|++.|+++++|+||||.|++.+..+.      .+|++.++|++++||||.|+
T Consensus        76 ~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~------~~Gs~~~~vl~~~~~pVlvv  136 (137)
T 2z08_A           76 PKEDALLLEG---VPAEAILQAARAEKADLIVMGTRGLGALGSL------FLGSQSQRVVAEAPCPVLLV  136 (137)
T ss_dssp             CGGGEEEEES---SHHHHHHHHHHHTTCSEEEEESSCTTCCSCS------SSCHHHHHHHHHCSSCEEEE
T ss_pred             CccEEEEEec---CHHHHHHHHHHHcCCCEEEECCCCCchhhhh------hhccHHHHHHhcCCCCEEEe
Confidence             444444444   8999999999999999999999987655443      48999999999999999875

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*

Probab=99.19  E-value=3.5e-11  Score=112.24  Aligned_cols=137  Identities=12%  Similarity=0.153  Sum_probs=87.2

Q ss_pred             ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCcccc---ccCccccccchhchhHHHHHHHHHHHhc
Q 036516          385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFL---KPHHQQTKSEAASSTQLINAFTQFQRCY  461 (709)
Q Consensus       385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~---~~~~~~~~~~~~~~~~i~~af~~~~~~~  461 (709)
                      -|||||++.+++...+++.+..++..  ...+++++|+++......+..   .+... .+......++..+.++++.+..
T Consensus         7 ~~ILv~vD~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~   83 (150)
T 3tnj_A            7 HHILLAVDFSSEDSQVVQKVRNLASQ--IGARLSLIHVLDNIPMPDTPYGTAIPLDT-ETTYDAMLDVEKQKLSQIGNTL   83 (150)
T ss_dssp             SEEEEECCCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEC--------CTTCCCSSS-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEEcCccccccccccccCcCH-HHHHHHHHHHHHHHHHHHHHHc
Confidence            48999999999999999999888843  457999999998643210000   00000 0011222334445555554332


Q ss_pred             CcceE-EEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEe
Q 036516          462 YGHVV-VQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVH  536 (709)
Q Consensus       462 ~~~v~-v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvd  536 (709)
                        ++. ++..+..+   +..+.|++.|+++++|+||||.|++.+.. .      .+|++.++|++++||||.|+..
T Consensus        84 --~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~------~~Gs~~~~vl~~~~~pVlvv~~  147 (150)
T 3tnj_A           84 --GIDPAHRWLVWG---EPREEIIRIAEQENVDLIVVGSHGRHGLA-L------LLGSTANSVLHYAKCDVLAVRL  147 (150)
T ss_dssp             --TCCGGGEEEEES---CHHHHHHHHHHHTTCSEEEEEEC---------------CCCHHHHHHHHCSSEEEEEEC
T ss_pred             --CCCcceEEEecC---CHHHHHHHHHHHcCCCEEEEecCCCCCcC-e------EecchHHHHHHhCCCCEEEEeC
Confidence              233 23334444   89999999999999999999999876544 3      4899999999999999988754

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4

Probab=99.17  E-value=1.3e-10  Score=111.43  Aligned_cols=143  Identities=11%  Similarity=0.127  Sum_probs=89.4

Q ss_pred             ceeEEEeccCC---------ChHHHHHHHHhhCCCC-CCCceEEEEEeeeccCCCcc----ccc-cCccc--cccchhch
Q 036516          385 LRILVCIHKEQ---------NVNPLISLLEVSNPTR-NSPIAAFVLQLMELKGSVTA----FLK-PHHQQ--TKSEAASS  447 (709)
Q Consensus       385 ~riLv~v~~~~---------~~~~li~l~~~~~~~~-~~~~~v~~Lhlvel~~~~~~----~~~-~~~~~--~~~~~~~~  447 (709)
                      -|||||++.++         ....+++.+..++..+ ....+++++|+++.......    ... +....  .+......
T Consensus         6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (175)
T 2gm3_A            6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG   85 (175)
T ss_dssp             EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred             cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHH
Confidence            58999999999         8888999988865322 24579999999864321110    000 00000  00111122


Q ss_pred             hHHHHHHHHHHHhcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcC
Q 036516          448 TQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKA  527 (709)
Q Consensus       448 ~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~a  527 (709)
                      ++.++.+.+..+  ..++.++..+..+   +..+.|++.|+++++||||||.|++.+..+.      .+|++.++|++++
T Consensus        86 ~~~l~~~~~~~~--~~g~~~~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~------~~Gsva~~vl~~a  154 (175)
T 2gm3_A           86 LHLLEFFVNKCH--EIGVGCEAWIKTG---DPKDVICQEVKRVRPDFLVVGSRGLGRFQKV------FVGTVSAFCVKHA  154 (175)
T ss_dssp             HHHHHHHHHHHH--HHTCEEEEEEEES---CHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHHHC
T ss_pred             HHHHHHHHHHHH--HCCCceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCChhhhh------hcCchHHHHHhCC
Confidence            334444433222  2357777666655   8999999999999999999999988655443      4899999999999


Q ss_pred             CccEEEEEecC
Q 036516          528 PCSVGILVHRG  538 (709)
Q Consensus       528 pCsVgIlvdrg  538 (709)
                      ||||.|+....
T Consensus       155 ~~pVlvv~~~~  165 (175)
T 2gm3_A          155 ECPVMTIKRNA  165 (175)
T ss_dssp             SSCEEEEECCG
T ss_pred             CCCEEEEcCCc
Confidence            99999876543

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}

Probab=99.16  E-value=3.7e-11  Score=112.95  Aligned_cols=137  Identities=10%  Similarity=0.094  Sum_probs=94.3

Q ss_pred             cceeEEEec--cCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhc
Q 036516          384 SLRILVCIH--KEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCY  461 (709)
Q Consensus       384 e~riLv~v~--~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~  461 (709)
                      --|||+|++  ++++...+++.+..++..  .+.+++++|+++.+..........+. .+......++.++.+.+..+. 
T Consensus        15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~-   90 (156)
T 3fg9_A           15 YRRILLTVDEDDNTSSERAFRYATTLAHD--YDVPLGICSVLESEDINIFDSLTPSK-IQAKRKHVEDVVAEYVQLAEQ-   90 (156)
T ss_dssp             CC-EEEECCSCCCHHHHHHHHHHHHHHHH--HTCCEEEEEEECCCCTTCCCSSHHHH-HHHHHHHHHHHHHHHHHHHHH-
T ss_pred             CceEEEEECCCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEEeCCCccccccCCHHH-HHHHHHHHHHHHHHHHHHHHH-
Confidence            358999999  999999999999888743  35789999999865321100000000 001222334444444443322 


Q ss_pred             Ccce-EEEEEEEEccCCChhHHHHHH-HhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516          462 YGHV-VVQHFTTIAPYATMHDDVCTL-ALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL  534 (709)
Q Consensus       462 ~~~v-~v~~~~~vs~~~~~~~dI~~~-A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl  534 (709)
                       .++ .++..+..+  .+..+.|++. |+++++||||||.|++.+.+ .      .+|++.++|++++||||.|+
T Consensus        91 -~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~------~~Gs~~~~vl~~a~~PVlvV  155 (156)
T 3fg9_A           91 -RGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS-K------IAGAIGPRLARKAPISVIVV  155 (156)
T ss_dssp             -HTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-S------SCSCHHHHHHHHCSSEEEEE
T ss_pred             -cCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc-e------eecchHHHHHHhCCCCEEEe
Confidence             345 467766762  3899999999 99999999999999886643 2      48999999999999999875

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}

Probab=99.14  E-value=4.8e-11  Score=109.60  Aligned_cols=133  Identities=11%  Similarity=0.030  Sum_probs=93.1

Q ss_pred             eeEEEeccCCChHHHHHHHHhhC-CCCCCCceEEEEEeeeccCCCccccccCccccccch-hchhHHHHHHHHHHHhcCc
Q 036516          386 RILVCIHKEQNVNPLISLLEVSN-PTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEA-ASSTQLINAFTQFQRCYYG  463 (709)
Q Consensus       386 riLv~v~~~~~~~~li~l~~~~~-~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~-~~~~~i~~af~~~~~~~~~  463 (709)
                      |||+|++.+++...+++.+..++ ...  ..+++++|+++.+..............+... ...++.++.+.+..+  ..
T Consensus         3 ~ILv~~D~s~~s~~al~~a~~la~~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~   78 (138)
T 3idf_A            3 KLLFAIDDTEACERAAQYILDMFGKDA--DCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFT--EK   78 (138)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHTTCT--TEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TT
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHhccCC--CCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHH--HC
Confidence            79999999999999999998888 443  4799999999865432110000000000111 333444444444332  35


Q ss_pred             ceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516          464 HVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL  534 (709)
Q Consensus       464 ~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl  534 (709)
                      +++++..+..+   +..+.|++.|+  ++||||||.|++.+..+.      . |++.++|++++||||.|+
T Consensus        79 g~~~~~~v~~g---~~~~~I~~~a~--~~dliV~G~~~~~~~~~~------~-Gs~~~~vl~~~~~pVlvv  137 (138)
T 3idf_A           79 GINPFVVIKEG---EPVEMVLEEAK--DYNLLIIGSSENSFLNKI------F-ASHQDDFIQKAPIPVLIV  137 (138)
T ss_dssp             TCCCEEEEEES---CHHHHHHHHHT--TCSEEEEECCTTSTTSSC------C-CCTTCHHHHHCSSCEEEE
T ss_pred             CCCeEEEEecC---ChHHHHHHHHh--cCCEEEEeCCCcchHHHH------h-CcHHHHHHhcCCCCEEEe
Confidence            67777777766   89999999998  999999999987665432      4 888999999999999875

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4

Probab=99.08  E-value=2.4e-10  Score=105.31  Aligned_cols=134  Identities=10%  Similarity=0.064  Sum_probs=88.1

Q ss_pred             eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeec-cCCCccccccCccccccchhchhHHHHHHHHHHHhcCcc
Q 036516          386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMEL-KGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGH  464 (709)
Q Consensus       386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel-~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~  464 (709)
                      |||+|++.+++...+++.+..++.  ..+.+++++|+.+- +...... ...... +......++..+.++++.+..  +
T Consensus         4 ~ILv~~D~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~l~~~~~~~--~   77 (141)
T 1jmv_A            4 HILVAVDLSEESPILLKKAVGIAK--RHDAKLSIIHVDVNFSDLYTGL-IDVNMS-SMQDRISTETQKALLDLAESV--D   77 (141)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHHHH--HHTCEEEEEEEEECCGGGCCCC-EEHHHH-HHTTCCCCHHHHHHHHHHHHS--S
T ss_pred             eEEEEecCchhhHHHHHHHHHHHH--hcCCEEEEEEEecCchhhhccc-cccchH-HHHHHHHHHHHHHHHHHHHHc--C
Confidence            799999999999999999988874  33479999999842 3211110 000000 000111233344444444332  3


Q ss_pred             eEE-EEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEec
Q 036516          465 VVV-QHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHR  537 (709)
Q Consensus       465 v~v-~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdr  537 (709)
                      +++ +..+..+   +..+.|++.|++.++|+||||.| +.+.+        .+|++.++|++++||||.|+..+
T Consensus        78 ~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~-~~~~~--------~lgs~~~~vl~~~~~pVlvv~~~  139 (141)
T 1jmv_A           78 YPISEKLSGSG---DLGQVLSDAIEQYDVDLLVTGHH-QDFWS--------KLMSSTRQVMNTIKIDMLVVPLR  139 (141)
T ss_dssp             SCCCCEEEEEE---CHHHHHHHHHHHTTCCEEEEEEC-CCCHH--------HHHHHHHHHHTTCCSEEEEEECC
T ss_pred             CCceEEEEecC---CHHHHHHHHHHhcCCCEEEEeCC-Cchhh--------hhcchHHHHHhcCCCCEEEeeCC
Confidence            333 3344445   89999999999999999999998 54321        16899999999999999887543

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4

Probab=98.96  E-value=1.1e-09  Score=100.58  Aligned_cols=128  Identities=9%  Similarity=-0.003  Sum_probs=83.1

Q ss_pred             ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEee-ec-cCCC-ccc-cccCccc-cccchhchhHHHHHHHHHHH
Q 036516          385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLM-EL-KGSV-TAF-LKPHHQQ-TKSEAASSTQLINAFTQFQR  459 (709)
Q Consensus       385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlv-el-~~~~-~~~-~~~~~~~-~~~~~~~~~~i~~af~~~~~  459 (709)
                      -|||+|++++++...+++.+..++.  ..+.+++++|++ +. +... ... ..+.... .+......++.++.++.+. 
T Consensus         5 ~~ILv~~D~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-   81 (138)
T 1q77_A            5 KVLLVLTDAYSDCEKAITYAVNFSE--KLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKL-   81 (138)
T ss_dssp             EEEEEEESTTCCCHHHHHHHHHHHT--TTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cEEEEEccCCHhHHHHHHHHHHHHH--HcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHh-
Confidence            4899999999999999999988884  445799999999 63 2100 000 0010000 0011122233333332210 


Q ss_pred             hcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516          460 CYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL  534 (709)
Q Consensus       460 ~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl  534 (709)
                      ....+ .++..+..+   +..+.|++.|+++++||||||.|++               ++.++|++++||||.|+
T Consensus        82 ~~~~~-~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~g~---------------sv~~~vl~~a~~PVlvv  137 (138)
T 1q77_A           82 TGSTE-IPGVEYRIG---PLSEEVKKFVEGKGYELVVWACYPS---------------AYLCKVIDGLNLASLIV  137 (138)
T ss_dssp             HSCCC-CCCEEEECS---CHHHHHHHHHTTSCCSEEEECSCCG---------------GGTHHHHHHSSSEEEEC
T ss_pred             hccCC-cceEEEEcC---CHHHHHHHHHHhcCCCEEEEeCCCC---------------chHHHHHHhCCCceEee
Confidence            12233 555544444   8999999999999999999999865               45889999999999774

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}

Probab=98.85  E-value=4e-09  Score=109.76  Aligned_cols=137  Identities=16%  Similarity=0.078  Sum_probs=91.3

Q ss_pred             cceeEEEeccCCC-------hHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHH
Q 036516          384 SLRILVCIHKEQN-------VNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQ  456 (709)
Q Consensus       384 e~riLv~v~~~~~-------~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~  456 (709)
                      .-|||+|++.+++       ...+++.+..++.  ..+.+++++|+.+.+.....  .+..   +......++..+.+++
T Consensus       134 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~--~~~~---~~~~~~~~~~~~~l~~  206 (290)
T 3mt0_A          134 GGKILAAVDVGNNDGEHRSLHAGIISHAYDIAG--LAKATLHVISAHPSPMLSSA--DPTF---QLSETIEARYREACRT  206 (290)
T ss_dssp             TCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHH--HTTCEEEEEEEEC-----------CH---HHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCcchhhhHHHHHHHHHHHHHHH--HcCCeEEEEEEecCcccccc--Cchh---HHHHHHHHHHHHHHHH
Confidence            4689999999998       7888888887773  33479999999986533211  1100   0011112233344444


Q ss_pred             HHHhcCcceE-EEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEE
Q 036516          457 FQRCYYGHVV-VQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILV  535 (709)
Q Consensus       457 ~~~~~~~~v~-v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlv  535 (709)
                      +.+..  ++. ++..+..+   +..+.|++.|+++++||||||.|++.+..+.      .+|++.++|++++||||.|+.
T Consensus       207 ~~~~~--g~~~~~~~v~~g---~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~------~~Gsv~~~vl~~~~~pVLvv~  275 (290)
T 3mt0_A          207 FQAEY--GFSDEQLHIEEG---PADVLIPRTAQKLDAVVTVIGTVARTGLSGA------LIGNTAEVVLDTLESDVLVLK  275 (290)
T ss_dssp             HHHHH--TCCTTTEEEEES---CHHHHHHHHHHHHTCSEEEEECCSSCCGGGC------CSCHHHHHHHTTCSSEEEEEC
T ss_pred             HHHHc--CCCcceEEEecc---CHHHHHHHHHHhcCCCEEEECCCCCcCCcce------ecchHHHHHHhcCCCCEEEEC
Confidence            44332  232 23333444   8999999999999999999999998776554      489999999999999998875


Q ss_pred             ecC
Q 036516          536 HRG  538 (709)
Q Consensus       536 drg  538 (709)
                      .++
T Consensus       276 ~~~  278 (290)
T 3mt0_A          276 PDD  278 (290)
T ss_dssp             CHH
T ss_pred             CCC
Confidence            544

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}

Probab=98.85  E-value=4.4e-09  Score=110.77  Aligned_cols=146  Identities=10%  Similarity=0.056  Sum_probs=94.1

Q ss_pred             cceeEEEeccCCC-------hHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHH
Q 036516          384 SLRILVCIHKEQN-------VNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQ  456 (709)
Q Consensus       384 e~riLv~v~~~~~-------~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~  456 (709)
                      .-|||+|++.++.       ...+++.+..++.......+++++|+.+..........+.....+......++..+.+++
T Consensus       156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  235 (319)
T 3olq_A          156 YGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMKE  235 (319)
T ss_dssp             TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHHH
Confidence            4689999999885       366777776666322114689999999876433211011100000111222334445555


Q ss_pred             HHHhcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEe
Q 036516          457 FQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVH  536 (709)
Q Consensus       457 ~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvd  536 (709)
                      +.+.... ..++..+..+   +..+.|++.|+++++||||||.|++.+..+.      .+|++.++|++++||||.|+..
T Consensus       236 ~~~~~~~-~~~~~~v~~g---~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~------~~Gsv~~~vl~~~~~pVLvv~~  305 (319)
T 3olq_A          236 LRQKFSI-PEEKTHVKEG---LPEQVIPQVCEELNAGIVVLGILGRTGLSAA------FLGNTAEQLIDHIKCDLLAIKP  305 (319)
T ss_dssp             HHHHTTC-CGGGEEEEES---CHHHHHHHHHHHTTEEEEEEECCSCCSTHHH------HHHHHHHHHHTTCCSEEEEECC
T ss_pred             HHHHhCC-CcccEEEecC---CcHHHHHHHHHHhCCCEEEEeccCccCCccc------cccHHHHHHHhhCCCCEEEECC
Confidence            5443211 1222333334   8899999999999999999999998765443      5999999999999999999876


Q ss_pred             cCC
Q 036516          537 RGQ  539 (709)
Q Consensus       537 rg~  539 (709)
                      +++
T Consensus       306 ~~~  308 (319)
T 3olq_A          306 DGF  308 (319)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            665

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}

Probab=98.70  E-value=2.3e-08  Score=104.10  Aligned_cols=121  Identities=11%  Similarity=0.079  Sum_probs=90.8

Q ss_pred             cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCc
Q 036516          384 SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYG  463 (709)
Q Consensus       384 e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  463 (709)
                      .-|||+|++.++....+++.+..++.  ..+..++++|+.+...                   .++.++.+.++.+.  .
T Consensus       170 ~~~Ilv~~d~s~~s~~al~~a~~la~--~~~~~l~ll~v~~~~~-------------------~~~~l~~~~~~l~~--~  226 (294)
T 3loq_A          170 FDRVLVAYDFSKWADRALEYAKFVVK--KTGGELHIIHVSEDGD-------------------KTADLRVMEEVIGA--E  226 (294)
T ss_dssp             TSEEEEECCSSHHHHHHHHHHHHHHH--HHTCEEEEEEECSSSC-------------------CHHHHHHHHHHHHH--T
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHhh--hcCCEEEEEEEccCch-------------------HHHHHHHHHHHHHH--c
Confidence            57899999999999999999888873  3346899999986432                   12223333333322  3


Q ss_pred             ceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEe
Q 036516          464 HVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVH  536 (709)
Q Consensus       464 ~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvd  536 (709)
                      ++.++..+.-   .+..+.|++.|++.++||||||.+++.+..+.      .+|++.++|++++||||.|+..
T Consensus       227 ~~~~~~~~~~---g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~------~~Gs~~~~vl~~~~~pvLvv~~  290 (294)
T 3loq_A          227 GIEVHVHIES---GTPHKAILAKREEINATTIFMGSRGAGSVMTM------ILGSTSESVIRRSPVPVFVCKR  290 (294)
T ss_dssp             TCCEEEEEEC---SCHHHHHHHHHHHTTCSEEEEECCCCSCHHHH------HHHCHHHHHHHHCSSCEEEECS
T ss_pred             CCcEEEEEec---CCHHHHHHHHHHhcCcCEEEEeCCCCCCccce------eeCcHHHHHHhcCCCCEEEECC
Confidence            4556665443   49999999999999999999999988654433      5899999999999999988643

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*

Probab=98.57  E-value=1.1e-07  Score=99.83  Aligned_cols=134  Identities=11%  Similarity=0.120  Sum_probs=89.6

Q ss_pred             cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhH-HHHHHHHHHHhcC
Q 036516          384 SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQ-LINAFTQFQRCYY  462 (709)
Q Consensus       384 e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~-i~~af~~~~~~~~  462 (709)
                      .-+||+|++.++....+++.+..++..  ....++++|+.+..... +.  +.. ..+......++ +.+.++.+.+. .
T Consensus       171 ~~~Ilv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~-~~--~~~-~~~~~~~~~~~~l~~~~~~~~~~-~  243 (309)
T 3cis_A          171 QAPVLVGVDGSSASELATAIAFDEASR--RNVDLVALHAWSDVDVS-EW--PGI-DWPATQSMAEQVLAERLAGWQER-Y  243 (309)
T ss_dssp             CCCEEEECCSSHHHHHHHHHHHHHHHH--TTCCEEEEEESCSSCCT-TC--SSC-CHHHHHHHHHHHHHHHHTTHHHH-C
T ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHHh--cCCEEEEEEEeeccccc-CC--Ccc-cHHHHHHHHHHHHHHHHHHHHhh-C
Confidence            458999999999999999998887733  34689999998743211 00  000 00001111111 22233333221 1


Q ss_pred             cceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEE
Q 036516          463 GHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILV  535 (709)
Q Consensus       463 ~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlv  535 (709)
                      .++.++..+..+   +..+.|++.|+  ++||||||.|++.+..+.      .+|++.++|++++||||.|+.
T Consensus       244 ~~~~~~~~~~~g---~~~~~I~~~a~--~adliV~G~~~~~~~~~~------l~Gsv~~~vl~~~~~pVlvv~  305 (309)
T 3cis_A          244 PNVAITRVVVRD---QPARQLVQRSE--EAQLVVVGSRGRGGYAGM------LVGSVGETVAQLARTPVIVAR  305 (309)
T ss_dssp             TTSCEEEEEESS---CHHHHHHHHHT--TCSEEEEESSCSSCCTTC------SSCHHHHHHHHHCSSCEEEEC
T ss_pred             CCCcEEEEEEcC---CHHHHHHHhhC--CCCEEEECCCCCCCcccc------ccCcHHHHHHhcCCCCEEEeC
Confidence            356676655444   89999999997  899999999998766554      489999999999999998863

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}

Probab=98.21  E-value=1.1e-05  Score=73.19  Aligned_cols=128  Identities=14%  Similarity=0.166  Sum_probs=77.4

Q ss_pred             eEEEEeeccCcChHHHHHHHHHHh-cCCCeEEEEEEeeecCCCCCCC---CCC---Cch-hHHHHHHHHHhhhcCCCcEE
Q 036516          553 YHIVMLFIGGADDREALAYSRRMA-EHPNTSLTVVWFITTDQNRPST---EMP---DDH-ELDNQAFDEFKDSMVGNKII  624 (709)
Q Consensus       553 ~~V~~~f~Gg~ddreAl~~a~rma-~~~~~~ltvl~v~~~~~~~~~~---~~~---~~~-~~d~~~l~~~~~~~~~~~v~  624 (709)
                      ++|+++.-|+++++.|+++|.++| +..+++++++|+.++.......   ..+   ..+ +..++.++++........+.
T Consensus         2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~   81 (138)
T 3idf_A            2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGIN   81 (138)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            479999999999999999999999 9999999999998732210000   000   001 23334555555433211222


Q ss_pred             EEEEeecChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEE
Q 036516          625 FREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVV  694 (709)
Q Consensus       625 y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv  694 (709)
                      +. ..+..| +..+.|.+.++++||+++|+++..         .|.+.-  |.+.+-+... ..|+||||
T Consensus        82 ~~-~~v~~g-~~~~~I~~~a~~~dliV~G~~~~~---------~~~~~~--Gs~~~~vl~~-~~~pVlvv  137 (138)
T 3idf_A           82 PF-VVIKEG-EPVEMVLEEAKDYNLLIIGSSENS---------FLNKIF--ASHQDDFIQK-APIPVLIV  137 (138)
T ss_dssp             CE-EEEEES-CHHHHHHHHHTTCSEEEEECCTTS---------TTSSCC--CCTTCHHHHH-CSSCEEEE
T ss_pred             eE-EEEecC-ChHHHHHHHHhcCCEEEEeCCCcc---------hHHHHh--CcHHHHHHhc-CCCCEEEe
Confidence            22 223334 244555445559999999998642         222222  6666666653 44688887

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0

Probab=98.19  E-value=7e-06  Score=75.37  Aligned_cols=131  Identities=12%  Similarity=0.204  Sum_probs=79.9

Q ss_pred             ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCC----C---CCchhHHHHHHHHHhhhcCCCcE-
Q 036516          552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTE----M---PDDHELDNQAFDEFKDSMVGNKI-  623 (709)
Q Consensus       552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~----~---~~~~~~d~~~l~~~~~~~~~~~v-  623 (709)
                      .++|+++.-|+++++.|+++|.++|+..+++++++|+.++........    .   +..++..++.++++........+ 
T Consensus         5 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~   84 (146)
T 3s3t_A            5 YTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSAP   84 (146)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             cceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            468999999999999999999999999999999999987432210000    0   01122334455555543321122 


Q ss_pred             EEEEEeecChhhHHHHHHh-hh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516          624 IFREEIVKDGIGTTQVIQA-FA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ  695 (709)
Q Consensus       624 ~y~e~~v~~g~~~~~~i~~-~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq  695 (709)
                      .+. ..+..|. ..+.|.+ .+  .++||+++|+++..      ++.+|    -+|...+-+... .+|+||||.
T Consensus        85 ~~~-~~~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~-~~~pVlvV~  146 (146)
T 3s3t_A           85 NLK-TEISYGI-PKHTIEDYAKQHPEIDLIVLGATGTN------SPHRV----AVGSTTSYVVDH-APCNVIVIR  146 (146)
T ss_dssp             CCE-EEEEEEC-HHHHHHHHHHHSTTCCEEEEESCCSS------CTTTC----SSCHHHHHHHHH-CSSEEEEEC
T ss_pred             ceE-EEEecCC-hHHHHHHHHHhhcCCCEEEECCCCCC------CcceE----EEcchHHHHhcc-CCCCEEEeC
Confidence            222 2222332 3333333 32  58999999998742      12222    378877777764 456899984

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*

Probab=98.18  E-value=1.8e-06  Score=88.28  Aligned_cols=113  Identities=11%  Similarity=0.007  Sum_probs=79.7

Q ss_pred             ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcc
Q 036516          385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGH  464 (709)
Q Consensus       385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~  464 (709)
                      -|||+|++.++....+++.+..++...  ..+++++|+.+..+                  ..++.++.+.++.+.  .+
T Consensus       155 ~~ilv~~d~s~~~~~al~~a~~la~~~--~a~l~ll~v~~~~~------------------~~~~~l~~~~~~l~~--~~  212 (268)
T 3ab8_A          155 EGALLGYDASESAVRALHALAPLARAL--GLGVRVVSVHEDPA------------------RAEAWALEAEAYLRD--HG  212 (268)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHHHHHH--TCCEEEEEECSSHH------------------HHHHHHHHHHHHHHH--TT
T ss_pred             CEEEEEECCCHHHHHHHHHHHHhhhcC--CCEEEEEEEcCcHH------------------HHHHHHHHHHHHHHH--cC
Confidence            489999999999988998887776332  35689999975320                  012223333333222  34


Q ss_pred             eEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516          465 VVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL  534 (709)
Q Consensus       465 v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl  534 (709)
                      ++++..+.-   .+..+.|.+.|++.  |||+||.    +..+.      .+|++.++|++++||||.++
T Consensus       213 ~~~~~~~~~---g~~~~~i~~~a~~~--dliV~G~----~~~~~------~~Gs~~~~vl~~~~~pvlvv  267 (268)
T 3ab8_A          213 VEASALVLG---GDAADHLLRLQGPG--DLLALGA----PVRRL------VFGSTAERVIRNAQGPVLTA  267 (268)
T ss_dssp             CCEEEEEEC---SCHHHHHHHHCCTT--EEEEEEC----CCSCC------SSCCHHHHHHHHCSSCEEEE
T ss_pred             CceEEEEeC---CChHHHHHHHHHhC--CEEEECC----ccccc------EeccHHHHHHhcCCCCEEEe
Confidence            666654443   48999999999988  9999998    22222      58999999999999999875

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*

Probab=98.12  E-value=3.3e-06  Score=78.99  Aligned_cols=127  Identities=11%  Similarity=0.077  Sum_probs=79.6

Q ss_pred             ceEEEEeecc-CcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHHHHHHHHhhhcCC-C-cEEEEEE
Q 036516          552 LYHIVMLFIG-GADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDNQAFDEFKDSMVG-N-KIIFREE  628 (709)
Q Consensus       552 ~~~V~~~f~G-g~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~-~-~v~y~e~  628 (709)
                      .++|+++.-| .+.++.|+++|.++|+..+++++++++.++...    ..+..++..++.++++...... . .+.. +.
T Consensus        24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~g~~~~~-~~   98 (155)
T 3dlo_A           24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR----TKDEDIIEAKETLSWAVSIIRKEGAEGEE-HL   98 (155)
T ss_dssp             CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT----SCHHHHHHHHHHHHHHHHHHHHTTCCEEE-EE
T ss_pred             cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc----ccHHHHHHHHHHHHHHHHHHHhcCCCceE-EE
Confidence            4579999999 999999999999999999999999999873221    1111123344455555433211 1 2322 22


Q ss_pred             eecChhhHHHHHHhhh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516          629 IVKDGIGTTQVIQAFA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ  695 (709)
Q Consensus       629 ~v~~g~~~~~~i~~~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq  695 (709)
                      .+..|. ..+.|.+.+  .++||+++|+++..      ++.+|    -+|.+.+-+... ..|+||||+
T Consensus        99 ~v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~~----~lGSv~~~vl~~-a~~PVLvVr  155 (155)
T 3dlo_A           99 LVRGKE-PPDDIVDFADEVDAIAIVIGIRKRS------PTGKL----IFGSVARDVILK-ANKPVICIK  155 (155)
T ss_dssp             EESSSC-HHHHHHHHHHHTTCSEEEEECCEEC------TTSCE----ECCHHHHHHHHH-CSSCEEEEC
T ss_pred             EecCCC-HHHHHHHHHHHcCCCEEEECCCCCC------CCCCE----EeccHHHHHHHh-CCCCEEEeC
Confidence            333332 333333333  28999999998642      12221    378888777764 556899984

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0

Probab=98.04  E-value=6.2e-06  Score=75.76  Aligned_cols=130  Identities=18%  Similarity=0.217  Sum_probs=76.6

Q ss_pred             eEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCC----C---CCCCC----CCCchhHHHHHHHHHhhhcC--
Q 036516          553 YHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ----N---RPSTE----MPDDHELDNQAFDEFKDSMV--  619 (709)
Q Consensus       553 ~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~----~---~~~~~----~~~~~~~d~~~l~~~~~~~~--  619 (709)
                      ++|+++.-|+++++.|+++|.++|+..+++++++|+.++..    .   .+.+.    .+..++..++.++++.....  
T Consensus         3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (147)
T 3hgm_A            3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATEL   82 (147)
T ss_dssp             SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            57999999999999999999999999999999999987211    0   00000    11112334455555553321  


Q ss_pred             CCcEEEEEEeecChhhHHHHHHhhh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEE
Q 036516          620 GNKIIFREEIVKDGIGTTQVIQAFA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVV  694 (709)
Q Consensus       620 ~~~v~y~e~~v~~g~~~~~~i~~~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv  694 (709)
                      +-.+...+..+..| +..+.|.+.+  .++||+++|+++..      ++.+|    -+|...+-+... .+|+||||
T Consensus        83 g~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~-~~~pVlvV  147 (147)
T 3hgm_A           83 GVPADKVRAFVKGG-RPSRTIVRFARKRECDLVVIGAQGTN------GDKSL----LLGSVAQRVAGS-AHCPVLVV  147 (147)
T ss_dssp             TCCGGGEEEEEEES-CHHHHHHHHHHHTTCSEEEECSSCTT------CCSCC----CCCHHHHHHHHH-CSSCEEEC
T ss_pred             CCCccceEEEEecC-CHHHHHHHHHHHhCCCEEEEeCCCCc------cccce----eeccHHHHHHhh-CCCCEEEC
Confidence            11110011222233 2333333333  38999999998742      11222    378777777664 45688876

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A

Probab=98.03  E-value=1.8e-05  Score=71.83  Aligned_cols=127  Identities=21%  Similarity=0.172  Sum_probs=77.0

Q ss_pred             eEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCC--CCCC-CCC--CCchhHHHHHHHHHhhhcCCCcEEEEE
Q 036516          553 YHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ--NRPS-TEM--PDDHELDNQAFDEFKDSMVGNKIIFRE  627 (709)
Q Consensus       553 ~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~--~~~~-~~~--~~~~~~d~~~l~~~~~~~~~~~v~y~e  627 (709)
                      ++|+++.-|+++++.|+++|.++|+..+++++++|+.++..  .... +.+  +..++..++.++++..+..-..+.+. 
T Consensus         3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~-   81 (137)
T 2z08_A            3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGVPKEDAL-   81 (137)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHHCCCGGGEE-
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHcCCCccEEE-
Confidence            47999999999999999999999999999999999986321  1000 000  11123344566666543211011111 


Q ss_pred             EeecCh---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516          628 EIVKDG---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ  695 (709)
Q Consensus       628 ~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq  695 (709)
                        +..|   +++.+.+++  .++||+++|+++..      ++.+|    -+|.+.+-+... .+|+||||.
T Consensus        82 --~~~g~~~~~I~~~a~~--~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~-~~~pVlvv~  137 (137)
T 2z08_A           82 --LLEGVPAEAILQAARA--EKADLIVMGTRGLG------ALGSL----FLGSQSQRVVAE-APCPVLLVR  137 (137)
T ss_dssp             --EEESSHHHHHHHHHHH--TTCSEEEEESSCTT------CCSCS----SSCHHHHHHHHH-CSSCEEEEC
T ss_pred             --EEecCHHHHHHHHHHH--cCCCEEEECCCCCc------hhhhh----hhccHHHHHHhc-CCCCEEEeC
Confidence              1223   233344443  38999999998742      12222    378888777764 556999883

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*

Probab=98.03  E-value=1.3e-05  Score=73.92  Aligned_cols=129  Identities=15%  Similarity=0.225  Sum_probs=76.4

Q ss_pred             ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCC-----C---CCCCCCCc---hhHHHHHHHHHhhhcCC
Q 036516          552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQN-----R---PSTEMPDD---HELDNQAFDEFKDSMVG  620 (709)
Q Consensus       552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~-----~---~~~~~~~~---~~~d~~~l~~~~~~~~~  620 (709)
                      .++|+++.-|+++++.|+++|.++|+..+++++++|+.++...     .   +.+.++..   ++..++.++++..+...
T Consensus         6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   85 (150)
T 3tnj_A            6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGI   85 (150)
T ss_dssp             CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4589999999999999999999999999999999999873211     0   00001111   12334555555544321


Q ss_pred             CcEEEEEEeecCh---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEeec
Q 036516          621 NKIIFREEIVKDG---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQ  697 (709)
Q Consensus       621 ~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq~  697 (709)
                      ..+   +..+..|   +++.+.+++  .++||+++|+++..         .|.  --+|.+.+-+... ..|+||||...
T Consensus        86 ~~~---~~~~~~g~~~~~I~~~a~~--~~~dliV~G~~~~~---------~~~--~~~Gs~~~~vl~~-~~~pVlvv~~~  148 (150)
T 3tnj_A           86 DPA---HRWLVWGEPREEIIRIAEQ--ENVDLIVVGSHGRH---------GLA--LLLGSTANSVLHY-AKCDVLAVRLR  148 (150)
T ss_dssp             CGG---GEEEEESCHHHHHHHHHHH--TTCSEEEEEEC-------------------CCCHHHHHHHH-CSSEEEEEECC
T ss_pred             Ccc---eEEEecCCHHHHHHHHHHH--cCCCEEEEecCCCC---------CcC--eEecchHHHHHHh-CCCCEEEEeCC
Confidence            111   1122223   223333333  38999999998742         122  3478887777764 45799999754

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*

Probab=98.01  E-value=2.2e-05  Score=71.64  Aligned_cols=127  Identities=20%  Similarity=0.262  Sum_probs=74.9

Q ss_pred             eEEEEeeccCcC--hHHHHHHHHHHhcCCCeEEEEEEeeecCCCC-CC-----CCCCCchhHHHHH---HHHHhhhcC-C
Q 036516          553 YHIVMLFIGGAD--DREALAYSRRMAEHPNTSLTVVWFITTDQNR-PS-----TEMPDDHELDNQA---FDEFKDSMV-G  620 (709)
Q Consensus       553 ~~V~~~f~Gg~d--dreAl~~a~rma~~~~~~ltvl~v~~~~~~~-~~-----~~~~~~~~~d~~~---l~~~~~~~~-~  620 (709)
                      ++|+++.-|+++  ++.|+++|.++|+..+++++++|+.++.... ..     ...+..++..++.   ++++..+.. .
T Consensus         2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   81 (143)
T 3fdx_A            2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP   81 (143)
T ss_dssp             CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence            479999999999  9999999999999999999999998732110 00     0001112222233   333333322 1


Q ss_pred             C-cEEEEEEeecChhhHHHHHHhhh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516          621 N-KIIFREEIVKDGIGTTQVIQAFA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ  695 (709)
Q Consensus       621 ~-~v~y~e~~v~~g~~~~~~i~~~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq  695 (709)
                      . ++.   ..+..| +..+.|.+.+  .++||+++|+++ .      |+.+|    -+|.+.+-+... ..|+||||.
T Consensus        82 ~~~v~---~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~-~------~~~~~----~~Gs~~~~v~~~-~~~pVlvv~  143 (143)
T 3fdx_A           82 EDRMH---FHVAEG-SPKDKILALAKSLPADLVIIASHR-P------DITTY----LLGSNAAAVVRH-AECSVLVVR  143 (143)
T ss_dssp             GGGEE---EEEEES-CHHHHHHHHHHHTTCSEEEEESSC-T------TCCSC----SSCHHHHHHHHH-CSSEEEEEC
T ss_pred             CCceE---EEEEec-ChHHHHHHHHHHhCCCEEEEeCCC-C------CCeee----eeccHHHHHHHh-CCCCEEEeC
Confidence            1 222   222233 2334443333  389999999984 2      12222    478888877764 556899873

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}

Probab=97.96  E-value=2.8e-05  Score=73.47  Aligned_cols=133  Identities=12%  Similarity=0.066  Sum_probs=80.6

Q ss_pred             ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCC--CCC-----------CCCCCCc---hhHHHHHHHHHh
Q 036516          552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ--NRP-----------STEMPDD---HELDNQAFDEFK  615 (709)
Q Consensus       552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~--~~~-----------~~~~~~~---~~~d~~~l~~~~  615 (709)
                      .++|+++.-|.++++.|+++|.++|+..+++++++|+.++..  ...           .+.++.+   ++..++.++++.
T Consensus         5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   84 (170)
T 2dum_A            5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA   84 (170)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            458999999999999999999999999999999999987321  000           0011111   122334555555


Q ss_pred             hhc--CCCcEEEEEEeecCh---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcc
Q 036516          616 DSM--VGNKIIFREEIVKDG---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFS  690 (709)
Q Consensus       616 ~~~--~~~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~S  690 (709)
                      ...  .+-.+.+ +..+..|   +++.+.+++  .++||+++|+++..      ++.+|    -+|.+.+-+... ..|+
T Consensus        85 ~~~~~~g~~~~~-~~~~~~g~~~~~I~~~a~~--~~~DlIV~G~~g~~------~~~~~----~~Gsv~~~vl~~-~~~P  150 (170)
T 2dum_A           85 EEVKRAFRAKNV-RTIIRFGIPWDEIVKVAEE--ENVSLIILPSRGKL------SLSHE----FLGSTVMRVLRK-TKKP  150 (170)
T ss_dssp             HHHHHHTTCSEE-EEEEEEECHHHHHHHHHHH--TTCSEEEEESCCCC------C--TT----CCCHHHHHHHHH-CSSC
T ss_pred             HHHHHcCCceee-eeEEecCChHHHHHHHHHH--cCCCEEEECCCCCC------ccccc----eechHHHHHHHh-CCCC
Confidence            432  1112222 1122233   233333343  38999999998742      12222    378888877764 5579


Q ss_pred             eEEEeecC
Q 036516          691 VLVVQQQP  698 (709)
Q Consensus       691 vLvvqq~~  698 (709)
                      ||||....
T Consensus       151 Vlvv~~~~  158 (170)
T 2dum_A          151 VLIIKEVD  158 (170)
T ss_dssp             EEEECCCC
T ss_pred             EEEEccCC
Confidence            99998654

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4

Probab=97.95  E-value=6.7e-05  Score=70.12  Aligned_cols=132  Identities=14%  Similarity=0.177  Sum_probs=79.9

Q ss_pred             ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecC-----CCCCCC--C--C-CCc-----------hhHHHHH
Q 036516          552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTD-----QNRPST--E--M-PDD-----------HELDNQA  610 (709)
Q Consensus       552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~-----~~~~~~--~--~-~~~-----------~~~d~~~  610 (709)
                      .++|+++.-|+++++.|+++|.++|+..+++++++|+.++.     ......  .  . ..+           ++..++.
T Consensus         5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (162)
T 1mjh_A            5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK   84 (162)
T ss_dssp             CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence            45899999999999999999999999999999999998743     100000  0  0 110           1123345


Q ss_pred             HHHHhhhcCCCcEEEEEEeecCh---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCC
Q 036516          611 FDEFKDSMVGNKIIFREEIVKDG---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSND  687 (709)
Q Consensus       611 l~~~~~~~~~~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~  687 (709)
                      ++++........+.+... +..|   +++.+.+++  .++||+++|+++..      ++.+|    -+|-+.+-+... .
T Consensus        85 l~~~~~~~~~~g~~~~~~-v~~G~~~~~I~~~a~~--~~~dlIV~G~~g~~------~~~~~----~~GSv~~~vl~~-~  150 (162)
T 1mjh_A           85 MENIKKELEDVGFKVKDI-IVVGIPHEEIVKIAED--EGVDIIIMGSHGKT------NLKEI----LLGSVTENVIKK-S  150 (162)
T ss_dssp             HHHHHHHHHHTTCEEEEE-EEEECHHHHHHHHHHH--TTCSEEEEESCCSS------CCTTC----SSCHHHHHHHHH-C
T ss_pred             HHHHHHHHHHcCCceEEE-EcCCCHHHHHHHHHHH--cCCCEEEEcCCCCC------Cccce----EecchHHHHHHh-C
Confidence            555544321111222222 2233   233333443  38999999998742      22222    388888887765 4


Q ss_pred             CcceEEEeec
Q 036516          688 EFSVLVVQQQ  697 (709)
Q Consensus       688 ~~SvLvvqq~  697 (709)
                      .|+||||...
T Consensus       151 ~~pVlvv~~~  160 (162)
T 1mjh_A          151 NKPVLVVKRK  160 (162)
T ss_dssp             CSCEEEECCC
T ss_pred             CCCEEEEeCC
Confidence            5799999753

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}

Probab=97.91  E-value=2.3e-05  Score=72.91  Aligned_cols=131  Identities=15%  Similarity=0.199  Sum_probs=78.5

Q ss_pred             ceEEEEeec--cCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCC-----CCchhHHHHHHHHHhhhcCCCcE-
Q 036516          552 LYHIVMLFI--GGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEM-----PDDHELDNQAFDEFKDSMVGNKI-  623 (709)
Q Consensus       552 ~~~V~~~f~--Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~-----~~~~~~d~~~l~~~~~~~~~~~v-  623 (709)
                      .++|+++.-  |+++++.|+++|.++|+..+++++++|+.++.........     +..++..++.++++........+ 
T Consensus        15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~   94 (156)
T 3fg9_A           15 YRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVN   94 (156)
T ss_dssp             CC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             CceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            468999999  9999999999999999999999999999873221100000     00122334455555433211111 


Q ss_pred             EEEEEeecChhhHHHHHHhh---hcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEe
Q 036516          624 IFREEIVKDGIGTTQVIQAF---AETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQ  695 (709)
Q Consensus       624 ~y~e~~v~~g~~~~~~i~~~---~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvq  695 (709)
                      .+.-....+|. ..+.|.+.   ..++||+++|+++..         .|. . -+|.+.+-+... .+|+||||.
T Consensus        95 ~~~~~v~~~g~-~~~~I~~~~a~~~~~DlIV~G~~g~~---------~~~-~-~~Gs~~~~vl~~-a~~PVlvV~  156 (156)
T 3fg9_A           95 QVEPLVYEGGD-VDDVILEQVIPEFKPDLLVTGADTEF---------PHS-K-IAGAIGPRLARK-APISVIVVR  156 (156)
T ss_dssp             SEEEEEEECSC-HHHHHHHTHHHHHCCSEEEEETTCCC---------TTS-S-SCSCHHHHHHHH-CSSEEEEEC
T ss_pred             ceEEEEEeCCC-HHHHHHHHHHHhcCCCEEEECCCCCC---------ccc-e-eecchHHHHHHh-CCCCEEEeC
Confidence            12222222132 33333332   258999999998742         232 2 488888877764 556999984

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4

Probab=97.88  E-value=8.5e-05  Score=67.59  Aligned_cols=126  Identities=17%  Similarity=0.201  Sum_probs=77.1

Q ss_pred             eEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeee--cCCCCCCC------CCCCchhHHHHHHHHHhhhcCCCcEE
Q 036516          553 YHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFIT--TDQNRPST------EMPDDHELDNQAFDEFKDSMVGNKII  624 (709)
Q Consensus       553 ~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~--~~~~~~~~------~~~~~~~~d~~~l~~~~~~~~~~~v~  624 (709)
                      ++|+++.-|+++++.|+++|.++|+..+++++++|+.+  +.......      ..+..++..++.++++..+.. -.+ 
T Consensus         3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~-   80 (141)
T 1jmv_A            3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVD-YPI-   80 (141)
T ss_dssp             SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSS-SCC-
T ss_pred             ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcC-CCc-
Confidence            47999999999999999999999999999999999984  21110000      001112223455666654432 111 


Q ss_pred             EEEEeecCh---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEeec
Q 036516          625 FREEIVKDG---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQ  697 (709)
Q Consensus       625 y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq~  697 (709)
                       .+..+..|   +++.+.+++  .++||+++|++ ..  .       |.   .+|-..+-+... ..|+||||...
T Consensus        81 -~~~~~~~g~~~~~I~~~a~~--~~~dliV~G~~-~~--~-------~~---~lgs~~~~vl~~-~~~pVlvv~~~  139 (141)
T 1jmv_A           81 -SEKLSGSGDLGQVLSDAIEQ--YDVDLLVTGHH-QD--F-------WS---KLMSSTRQVMNT-IKIDMLVVPLR  139 (141)
T ss_dssp             -CCEEEEEECHHHHHHHHHHH--TTCCEEEEEEC-CC--C-------HH---HHHHHHHHHHTT-CCSEEEEEECC
T ss_pred             -eEEEEecCCHHHHHHHHHHh--cCCCEEEEeCC-Cc--h-------hh---hhcchHHHHHhc-CCCCEEEeeCC
Confidence             11122222   334444443  37999999998 42  1       21   257777777654 55799999754

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4

Probab=97.81  E-value=7.8e-05  Score=70.16  Aligned_cols=132  Identities=14%  Similarity=0.179  Sum_probs=77.0

Q ss_pred             ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEE--EeeecCCC-CCC-----CCCCCchhHHHHHHHHHhhhcCCCcE
Q 036516          552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVV--WFITTDQN-RPS-----TEMPDDHELDNQAFDEFKDSMVGNKI  623 (709)
Q Consensus       552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl--~v~~~~~~-~~~-----~~~~~~~~~d~~~l~~~~~~~~~~~v  623 (709)
                      .++|++++-|++.++.|+++|.++|+ .+++++++  ++.++... ...     +..+..++..++.++++........+
T Consensus        17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gv   95 (163)
T 1tq8_A           17 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGA   95 (163)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999999 99999999  88752211 000     00011122234455555443211112


Q ss_pred             E-EEEEeecChhhHHHHHHhhh--cCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEeec
Q 036516          624 I-FREEIVKDGIGTTQVIQAFA--ETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQ  697 (709)
Q Consensus       624 ~-y~e~~v~~g~~~~~~i~~~~--~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq~  697 (709)
                      . +... +..|. ..+.|.+.+  .++||+++|+++..      ++.+|    -+|-+.+-+... .+|+||||...
T Consensus        96 ~~v~~~-v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~~----~lGSva~~vl~~-a~~PVlvV~~~  159 (163)
T 1tq8_A           96 KNVEER-PIVGA-PVDALVNLADEEKADLLVVGNVGLS------TIAGR----LLGSVPANVSRR-AKVDVLIVHTT  159 (163)
T ss_dssp             CEEEEE-EECSS-HHHHHHHHHHHTTCSEEEEECCCCC------SHHHH----HTBBHHHHHHHH-TTCEEEEECCC
T ss_pred             CeEEEE-EecCC-HHHHHHHHHHhcCCCEEEECCCCCC------cccce----eeccHHHHHHHh-CCCCEEEEeCC
Confidence            1 2222 22342 333333322  48999999998742      12222    378887777764 45799999764

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4

Probab=97.59  E-value=0.00051  Score=64.99  Aligned_cols=133  Identities=10%  Similarity=0.111  Sum_probs=74.2

Q ss_pred             ceEEEEeeccCc---------ChHHHHHHHHHHh-cC--CCeEEEEEEeeecCC--CC---C-CCCC-------CCchhH
Q 036516          552 LYHIVMLFIGGA---------DDREALAYSRRMA-EH--PNTSLTVVWFITTDQ--NR---P-STEM-------PDDHEL  606 (709)
Q Consensus       552 ~~~V~~~f~Gg~---------ddreAl~~a~rma-~~--~~~~ltvl~v~~~~~--~~---~-~~~~-------~~~~~~  606 (709)
                      .++|+++.-|.+         .++.|+++|.+++ +.  .+++++++|+.++..  ..   . ....       +..++.
T Consensus         5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (175)
T 2gm3_A            5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAK   84 (175)
T ss_dssp             CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHH
T ss_pred             ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHH
Confidence            468999999888         8899999999986 54  699999999975211  10   0 0000       011112


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEEeecCh---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhh
Q 036516          607 DNQAFDEFKDSMVGNKIIFREEIVKDG---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLV  683 (709)
Q Consensus       607 d~~~l~~~~~~~~~~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~la  683 (709)
                      .++.++++........+.+.-. +..|   +++.+.+++  .++||+++|+++..      ++.+|    -+|-+.+-+.
T Consensus        85 ~~~~l~~~~~~~~~~g~~~~~~-v~~G~~~~~I~~~a~~--~~~DLIVmG~~g~~------~~~~~----~~Gsva~~vl  151 (175)
T 2gm3_A           85 GLHLLEFFVNKCHEIGVGCEAW-IKTGDPKDVICQEVKR--VRPDFLVVGSRGLG------RFQKV----FVGTVSAFCV  151 (175)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEE-EEESCHHHHHHHHHHH--HCCSEEEEEECCCC------------------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCceEEE-EecCCHHHHHHHHHHH--hCCCEEEEeCCCCC------hhhhh----hcCchHHHHH
Confidence            3445666554321112222222 2233   223333333  37999999998642      22222    3787777777


Q ss_pred             cCCCCcceEEEeecC
Q 036516          684 NSNDEFSVLVVQQQP  698 (709)
Q Consensus       684 s~d~~~SvLvvqq~~  698 (709)
                      .. ..|+||||....
T Consensus       152 ~~-a~~pVlvv~~~~  165 (175)
T 2gm3_A          152 KH-AECPVMTIKRNA  165 (175)
T ss_dssp             HH-CSSCEEEEECCG
T ss_pred             hC-CCCCEEEEcCCc
Confidence            64 457999998654

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=97.49  E-value=0.052  Score=56.97  Aligned_cols=111  Identities=14%  Similarity=0.107  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhcChHHHHhhhhh---HHHHHHHHHH-HHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHh
Q 036516           28 LRTFAEFGMILHAFVLGVQIDLGLVKHIRKR---AVIIGITSTL-LPLVFGLSSFRIVQRISHLDDETASSIAASVVVNS  103 (709)
Q Consensus        28 l~~la~iGli~~lF~~Gle~d~~~l~~~~~~---~~~i~~~~~~-ip~~~g~~~~~~l~~~~~~~~~~~~~~l~l~~~ls  103 (709)
                      ++......+.+.||..|++++.+.+++..++   ........++ .|+ ++++++.++..    ++......++++++=+
T Consensus        41 ~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pl-l~~~l~~~~~l----~~~~~~Glil~~~~P~  115 (332)
T 3zux_A           41 AGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPA-TAWCLSKLLNL----PAEIAVGVILVGCCPG  115 (332)
T ss_dssp             GGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHH-HHHHHHHHTTC----CHHHHHHHHHHHHSCC
T ss_pred             hHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHH-HHHHHHHHhCC----ChHHHHHHHHHhcCCc
Confidence            3345567888999999999999999965443   2222333443 443 44555544421    1111222222222223


Q ss_pred             hchHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036516          104 MTSLVVITGLLKELKMLNSELGRLAASITIVSHIFGWSASMILLSVR  150 (709)
Q Consensus       104 ~Ts~~vv~~iL~el~ll~s~~G~lals~a~v~D~~~~~ll~i~~~~~  150 (709)
                      .++..+.++      +.+.+. .++++...++.+++.+.+-+...+.
T Consensus       116 ~~~s~v~t~------~a~Gd~-~la~~~~~~stll~~~~~Pl~~~l~  155 (332)
T 3zux_A          116 GTASNVMTY------LARGNV-ALSVAVTSVSTLTSPLLTPAIFLML  155 (332)
T ss_dssp             CTHHHHHHH------HTTCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHH------HhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444332      223333 6778888889998888876555444

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4

Probab=97.43  E-value=0.00016  Score=65.47  Aligned_cols=38  Identities=16%  Similarity=0.270  Sum_probs=36.0

Q ss_pred             ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEee
Q 036516          552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFI  589 (709)
Q Consensus       552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~  589 (709)
                      .++|+++.-|.++++.|+++|.++|+..+++++++|+.
T Consensus         4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~   41 (138)
T 1q77_A            4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVL   41 (138)
T ss_dssp             CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred             ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence            46899999999999999999999999999999999998

>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}

Probab=96.24  E-value=0.067  Score=54.04  Aligned_cols=222  Identities=13%  Similarity=0.073  Sum_probs=135.2

Q ss_pred             cceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCc
Q 036516          384 SLRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYG  463 (709)
Q Consensus       384 e~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  463 (709)
                      .-++||++..|..-.+++.++.++...+   ..+.+.++.  ++...+           .  -.++ +.++++|-+.  .
T Consensus        20 rP~iLV~sg~p~~~~~li~la~~lt~~~---G~ltv~~i~--p~~~~~-----------~--l~~q-l~~l~~~l~~--r   78 (294)
T 3g40_A           20 KANLLVPVEDPRELMGTFDFLRDITYPK---GSVKLLGLA--GNTDKE-----------N--LLSQ-LPSISEGFQE--E   78 (294)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHHHHHTTT---CEEEEEECC-----CTT-----------C--HHHH-HHHHHHHHHH--T
T ss_pred             CCcEEEecCCchhhhhHHHHHHHhccCc---eeEEEEEEc--cCCCcc-----------H--HHHH-HHHHHHHHHh--C
Confidence            7899999999999999999999998655   477777774  221100           0  0122 2556666543  3


Q ss_pred             ceEEEEEEEEccCCChhHHHHHHHhhc-----CccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEecC
Q 036516          464 HVVVQHFTTIAPYATMHDDVCTLALDK-----RVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHRG  538 (709)
Q Consensus       464 ~v~v~~~~~vs~~~~~~~dI~~~A~e~-----~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdrg  538 (709)
                      ++.  .++++-+-++.++++....+.+     +.+.|+||+..+...       +..++.+.++. .++.-.|.++-+..
T Consensus        79 ~v~--a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~-------~~~y~~~i~~~-~~~~~nVlil~~~~  148 (294)
T 3g40_A           79 GVF--SSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDR-------DEEIREIIRKA-SMYRMGVLLFSKHP  148 (294)
T ss_dssp             TCE--EEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGG-------HHHHHHHHHHH-HHTTCEEEEEECCT
T ss_pred             Cce--eEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhh-------hHHHHHHHHHH-HHhCceEEEEecCC
Confidence            343  3334444468899999988877     469999998755422       22477888775 45588888875432


Q ss_pred             CCCCCCcccCCCcceEEEEeec--------cC--cChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCCchhHHH
Q 036516          539 QNKSNRPVYTGELLYHIVMLFI--------GG--ADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPDDHELDN  608 (709)
Q Consensus       539 ~~~~~~~~~~~~~~~~V~~~f~--------Gg--~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~~~~d~  608 (709)
                      ... .    ..  .++|=+-.-        ||  .+-..++-+|-.+.++.++++.++.++++         +.+++..+
T Consensus       149 ~~~-f----g~--~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d---------e~a~~~a~  212 (294)
T 3g40_A          149 QAG-L----GR--QNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT---------AIQAQAAE  212 (294)
T ss_dssp             TTT-T----TT--SCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS---------HHHHHHHH
T ss_pred             ccC-C----CC--CceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC---------HHHHHHHH
Confidence            211 0    01  123433311        22  34467888888898889999999999862         22355666


Q ss_pred             HHHHHHhhhcCCCcEEEEEEeecChhhHHHHHHhhhcCCcEEEEecCCCC
Q 036516          609 QAFDEFKDSMVGNKIIFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDP  658 (709)
Q Consensus       609 ~~l~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~  658 (709)
                      .+++++....--....+  . |.  .+-.+++++. .+.||+++|-....
T Consensus       213 ~~l~~Lv~~~Ri~a~~~--v-v~--~~F~~il~~s-~~ADL~flGl~~~~  256 (294)
T 3g40_A          213 NFLQSLAELARIPNVKM--Q-VL--RENPIKSSKL-PFASLHIFSLDPNP  256 (294)
T ss_dssp             HHHHHHHHHHTCCSCEE--E-EE--SSCTTTSSSC-CCCSEEEEECCSSC
T ss_pred             HHHHHHHHHhcCCceEE--E-ec--CchHHHHhhC-cCCCEEEEcCCCCC
Confidence            77777775431111112  2 22  2344556664 67999999986653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	709
d1mjha_	160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.41
d2z3va1	135	Hypothetical protein TTHA0895 {Thermus thermophilu	99.35
d1jmva_	140	Universal stress protein A, UspA {Haemophilus infl	99.21
d2gm3a1	171	Putative ethylene-responsive protein AT3g01520/F4P	99.19
d1tq8a_	147	Hypothetical protein Rv1636 {Mycobacterium tubercu	99.12
d1q77a_	138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	98.95
d2z3va1	135	Hypothetical protein TTHA0895 {Thermus thermophilu	98.27
d1mjha_	160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	98.27
d1jmva_	140	Universal stress protein A, UspA {Haemophilus infl	98.19
d1tq8a_	147	Hypothetical protein Rv1636 {Mycobacterium tubercu	97.85
d1q77a_	138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	97.78
d2gm3a1	171	Putative ethylene-responsive protein AT3g01520/F4P	96.62

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.41  E-value=7.8e-13  Score=123.01  Aligned_cols=141  Identities=13%  Similarity=0.154  Sum_probs=99.2

Q ss_pred             eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCcc----ccc---c-----chhchhHHHHH
Q 036516          386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQ----QTK---S-----EAASSTQLINA  453 (709)
Q Consensus       386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~----~~~---~-----~~~~~~~i~~a  453 (709)
                      |||||++.++....+++.+..++  +..+.+++++|+++..............    ...   .     .....++..+.
T Consensus         5 ~ILvavD~s~~s~~al~~a~~la--~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (160)
T d1mjha_           5 KILYPTDFSETAEIALKHVKAFK--TLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK   82 (160)
T ss_dssp             EEEEECCSCHHHHHHHHHHHHTC--CSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHHHHH--HhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999998  4445799999999876533221110000    000   0     01112222333


Q ss_pred             HHHHHHhc-CcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEE
Q 036516          454 FTQFQRCY-YGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVG  532 (709)
Q Consensus       454 f~~~~~~~-~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVg  532 (709)
                      ++.+.+.. ..++.++.....+   ++.+.||+.|++.++|+||||.|++.+..+.      .+|++.++|++++||||.
T Consensus        83 l~~~~~~~~~~gv~~~~~~~~G---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~------~~GS~a~~vl~~s~~pVl  153 (160)
T d1mjha_          83 MENIKKELEDVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEI------LLGSVTENVIKKSNKPVL  153 (160)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTC------SSCHHHHHHHHHCCSCEE
T ss_pred             HHHHHHHHHhcCCeEEEEEEec---cHHHHHhhhhhccccceEEeccCCCCccccc------ccCcHHHHHHhcCCCCEE
Confidence            33333211 3568888888877   8999999999999999999999998766554      489999999999999998


Q ss_pred             EEEec
Q 036516          533 ILVHR  537 (709)
Q Consensus       533 Ilvdr  537 (709)
                      |+..+
T Consensus       154 vV~~~  158 (160)
T d1mjha_         154 VVKRK  158 (160)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            87654

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]

Probab=99.35  E-value=4e-13  Score=121.23  Aligned_cols=133  Identities=9%  Similarity=0.072  Sum_probs=92.8

Q ss_pred             eeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcce
Q 036516          386 RILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGHV  465 (709)
Q Consensus       386 riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~v  465 (709)
                      |||+|++++++...+++.+..++.  ..+.+++++|+++.+....+    +...++......++..+.++++.+... ..
T Consensus         3 ~Ilv~~D~s~~s~~a~~~a~~~a~--~~~~~l~ll~V~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~   75 (135)
T d2z3va1           3 TILLAYDGSEHARRAAEVAKAEAE--AHGARLIVVHAYEPVPDYLG----EPFFEEALRRRLERAEGVLEEARALTG-VP   75 (135)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHH--HHTCEEEEEEEECCCCTTCC----TTHHHHHHHHHHHHHHHHHHHHHHHHC-CC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHH--HcCCEEEEEEEecCCccccc----cchhHHHHHHHHHHHHHHHHHHHHhcC-CC
Confidence            799999999999999999988873  34579999999985432211    111111122233445555555543321 11


Q ss_pred             EEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516          466 VVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL  534 (709)
Q Consensus       466 ~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl  534 (709)
                      ..+....-   .+..+.||+.|+++++|+||||+|++.+..+.      .+|++.+++++++||||.|+
T Consensus        76 ~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~------~~Gs~~~~ll~~~~~pVlvV  135 (135)
T d2z3va1          76 KEDALLLE---GVPAEAILQAARAEKADLIVMGTRGLGALGSL------FLGSQSQRVVAEAPCPVLLV  135 (135)
T ss_dssp             GGGEEEEE---SCHHHHHHHHHHHTTCSEEEEESSCSSSCBCS------SCBHHHHHHHHHCSSCEEEE
T ss_pred             eEEEEEEc---CChHHHHHHHhhhhheeeEEeccCCCCccccc------ccCcHHHHHHHhCCCCEEeC
Confidence            12222222   48999999999999999999999998765544      48999999999999999774

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Universal stress protein A, UspA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.21  E-value=1.2e-11  Score=112.00  Aligned_cols=137  Identities=9%  Similarity=0.062  Sum_probs=93.8

Q ss_pred             ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccccccchhchhHHHHHHHHHHHhcCcc
Q 036516          385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQTKSEAASSTQLINAFTQFQRCYYGH  464 (709)
Q Consensus       385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~  464 (709)
                      -|||||+++++....+++.+..++  +..+..++++|+++.+....+-..+... .+......++..+.++++.+..  +
T Consensus         3 k~ILv~vD~s~~s~~al~~A~~~a--~~~~~~v~~lhv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~   77 (140)
T d1jmva_           3 KHILVAVDLSEESPILLKKAVGIA--KRHDAKLSIIHVDVNFSDLYTGLIDVNM-SSMQDRISTETQKALLDLAESV--D   77 (140)
T ss_dssp             SEEEEEECCSTTHHHHHHHHHHHH--HHHTCEEEEEEEEECCGGGCCCCEEHHH-HHHTTCCCCHHHHHHHHHHHHS--S
T ss_pred             CeEEEEECCCHHHHHHHHHHHHHH--HHcCCeEEEEEEeeecccccccccccch-HHHHHHHHHHHHHHHHHHHHhc--C
Confidence            389999999999999999998888  3445799999999866433221111000 0011122344555555555432  2


Q ss_pred             eEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEEEec
Q 036516          465 VVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGILVHR  537 (709)
Q Consensus       465 v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIlvdr  537 (709)
                      ..........  .+..+.|++.|++.++|+||||.|++++.         .+|++.+++++++||||.|+..+
T Consensus        78 ~~~~~~~~~~--~~~~~~I~~~a~~~~~dliV~G~~~~~~~---------~lgs~~~~li~~~~~pVliVp~~  139 (140)
T d1jmva_          78 YPISEKLSGS--GDLGQVLSDAIEQYDVDLLVTGHHQDFWS---------KLMSSTRQVMNTIKIDMLVVPLR  139 (140)
T ss_dssp             SCCCCEEEEE--ECHHHHHHHHHHHTTCCEEEEEECCCCHH---------HHHHHHHHHHTTCCSEEEEEECC
T ss_pred             CceEEEEEEe--cCHHHHHHHhhhhchhhEEEeccCCCCCC---------CcccHHHHHHhccCCCEEEEecC
Confidence            2222222333  48999999999999999999999876531         38999999999999999887543

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.19  E-value=6.2e-11  Score=111.30  Aligned_cols=143  Identities=10%  Similarity=0.099  Sum_probs=87.2

Q ss_pred             ceeEEEeccCC---------ChHHHHHHHHh-hCCCCCCCceEEEEEeeeccCCCccccccCccc-------cccchhch
Q 036516          385 LRILVCIHKEQ---------NVNPLISLLEV-SNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQ-------TKSEAASS  447 (709)
Q Consensus       385 ~riLv~v~~~~---------~~~~li~l~~~-~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~-------~~~~~~~~  447 (709)
                      -|||||+++++         ....+++-+.. +.....+...++++|+.+......+........       .+....+.
T Consensus         2 ~ki~vavd~s~~~~~~~~~~~S~~Al~wal~~~~~~~~~~~~L~~vhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (171)
T d2gm3a1           2 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG   81 (171)
T ss_dssp             EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred             CEEEEEEcCCcccCCCCCCHHHHHHHHHHHHHHHHCCCCCcEEEEEEeccccccccccccccccCHHHHHHHHHHHHHHH
Confidence            48999999876         45667776643 333344456799999887654332211111000       00122233


Q ss_pred             hHHHHHHHHHHHhcCcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcC
Q 036516          448 TQLINAFTQFQRCYYGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKA  527 (709)
Q Consensus       448 ~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~a  527 (709)
                      +++++.+.+..+  ..++.++..+...   +..+.||+.|++.++|+||||.|++.+..+.      .+|++.++|++++
T Consensus        82 ~~~l~~~~~~~~--~~~~~~~~~v~~G---~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~------~lGSv~~~vi~~~  150 (171)
T d2gm3a1          82 LHLLEFFVNKCH--EIGVGCEAWIKTG---DPKDVICQEVKRVRPDFLVVGSRGLGRFQKV------FVGTVSAFCVKHA  150 (171)
T ss_dssp             HHHHHHHHHHHH--HHTCEEEEEEEES---CHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHHHC
T ss_pred             HHHHHHHHHHHH--hcCCceEEEEEeC---ChHHHHHHHHhhcCCcEEEeccCCccccccC------ccCcHHHHHHhCC
Confidence            444444443322  3457888877766   8999999999999999999999998665443      5899999999999


Q ss_pred             CccEEEEEecC
Q 036516          528 PCSVGILVHRG  538 (709)
Q Consensus       528 pCsVgIlvdrg  538 (709)
                      ||||.|+....
T Consensus       151 ~cpVlvV~~~~  161 (171)
T d2gm3a1         151 ECPVMTIKRNA  161 (171)
T ss_dssp             SSCEEEEECCG
T ss_pred             CCCEEEEeCCC
Confidence            99998875443

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Rv1636
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.12  E-value=6.1e-11  Score=108.03  Aligned_cols=138  Identities=11%  Similarity=0.056  Sum_probs=88.4

Q ss_pred             ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccc-cCccccccchhchhHHHHHHHHHHHhcCc
Q 036516          385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLK-PHHQQTKSEAASSTQLINAFTQFQRCYYG  463 (709)
Q Consensus       385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~-~~~~~~~~~~~~~~~i~~af~~~~~~~~~  463 (709)
                      -|||||++.++....+++.+..++.  .....+++++..+.......... ..+..........++.++.+++.... .+
T Consensus         6 k~ILv~vD~s~~s~~al~~A~~la~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~   82 (147)
T d1tq8a_           6 KTVVVGTDGSDSSMRAVDRAAQIAG--ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHN-AG   82 (147)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHT--TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHT-TT
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHh--cCCCEEEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence            4899999999999999999988873  33334444443332222211111 00111112334455666666665432 23


Q ss_pred             ceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516          464 HVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL  534 (709)
Q Consensus       464 ~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl  534 (709)
                      ...++..+..+   +..+.|++.|++.++|+||+|.|++.+..+      ..+|++.++|++++||||.|+
T Consensus        83 ~~~~~~~~~~G---~~~~~i~~~a~~~~~dlIv~g~~~~~~~~~------~l~Gs~~~~ll~~~~~pVlvV  144 (147)
T d1tq8a_          83 AKNVEERPIVG---APVDALVNLADEEKADLLVVGNVGLSTIAG------RLLGSVPANVSRRAKVDVLIV  144 (147)
T ss_dssp             CCEEEEEEECS---SHHHHHHHHHHHTTCSEEEEECCCCCSHHH------HHTBBHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEEEEec---ChHHHHHHhhhccceeEEEecCCCCCcccc------cccccHHHHHHHhCCCCEEEE
Confidence            33466666655   899999999999999999999998755433      358999999999999999876

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Aq 178
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.95  E-value=5.2e-10  Score=100.36  Aligned_cols=130  Identities=8%  Similarity=-0.037  Sum_probs=87.5

Q ss_pred             ceeEEEeccCCChHHHHHHHHhhCCCCCCCceEEEEEeeeccCCCccccccCccc--cccchhchhHHHHHHHHHHHhc-
Q 036516          385 LRILVCIHKEQNVNPLISLLEVSNPTRNSPIAAFVLQLMELKGSVTAFLKPHHQQ--TKSEAASSTQLINAFTQFQRCY-  461 (709)
Q Consensus       385 ~riLv~v~~~~~~~~li~l~~~~~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~--~~~~~~~~~~i~~af~~~~~~~-  461 (709)
                      -|||+|+|++++...+++.+..++.  ....+++++|++|......+........  ........++..+.++++.+.. 
T Consensus         5 k~ILv~~D~S~~s~~al~~A~~~a~--~~~a~l~llhv~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~~~   82 (138)
T d1q77a_           5 KVLLVLTDAYSDCEKAITYAVNFSE--KLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKLT   82 (138)
T ss_dssp             EEEEEEESTTCCCHHHHHHHHHHHT--TTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEeCCHHHHHHHHHHHHhhh--hccceEEEEEEccCcccccccccccccchhhhhhhhhhhhccccchhhccccc
Confidence            3799999999999999999999984  4457999999998543221111111000  0011111233333333333211 


Q ss_pred             CcceEEEEEEEEccCCChhHHHHHHHhhcCccEEEecCCccccCCcceeccchhhHHHHHHHhhcCCccEEEE
Q 036516          462 YGHVVVQHFTTIAPYATMHDDVCTLALDKRVVIIIVPFHKQWGVGGILESTDLSIRALNRNVLHKAPCSVGIL  534 (709)
Q Consensus       462 ~~~v~v~~~~~vs~~~~~~~dI~~~A~e~~~dlII~g~h~~~~~~g~~~~~~~~~~~~~~~Vl~~apCsVgIl  534 (709)
                      ..+..++..+..+   +..+.|++.|++.++||||||+|++..               .++++..+.||+.|.
T Consensus        83 ~~~~~~~~~v~~G---~~~~~I~~~a~~~~~DLIV~Gs~g~~~---------------l~r~l~g~~~~~liv  137 (138)
T d1q77a_          83 GSTEIPGVEYRIG---PLSEEVKKFVEGKGYELVVWACYPSAY---------------LCKVIDGLNLASLIV  137 (138)
T ss_dssp             SCCCCCCEEEECS---CHHHHHHHHHTTSCCSEEEECSCCGGG---------------THHHHHHSSSEEEEC
T ss_pred             ccceeEEEeeecc---hhHHHHHHhhhhccCCEEEEecCCCcH---------------HHHHhcCCCCCEEEe
Confidence            3455666666666   899999999999999999999998642               457889999999774

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]

Probab=98.27  E-value=9e-07  Score=78.38  Aligned_cols=126  Identities=20%  Similarity=0.154  Sum_probs=79.9

Q ss_pred             eEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCCCCCCC------chhHHHHHHHHHhhhcCCC--cEE
Q 036516          553 YHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPSTEMPD------DHELDNQAFDEFKDSMVGN--KII  624 (709)
Q Consensus       553 ~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~------~~~~d~~~l~~~~~~~~~~--~v~  624 (709)
                      +||+++.-|++.++.|+++|.++|+..+++++++|+.++..... .....      ..+.-++.++++.......  ...
T Consensus         2 k~Ilv~~D~s~~s~~a~~~a~~~a~~~~~~l~ll~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   80 (135)
T d2z3va1           2 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYL-GEPFFEEALRRRLERAEGVLEEARALTGVPKEDAL   80 (135)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECCCCTTC-CTTHHHHHHHHHHHHHHHHHHHHHHHHCCCGGGEE
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHcCCEEEEEEEecCCcccc-ccchhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            47999999999999999999999999999999999987322100 01100      1122334555555433211  222


Q ss_pred             EEEEeecChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEE
Q 036516          625 FREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVV  694 (709)
Q Consensus       625 y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvv  694 (709)
                      ..+..+  ++++.+.+++.  ++||+++|+++..      ++.+|    =+|-..+-+... .+|+||||
T Consensus        81 ~~~g~~--~~~I~~~a~~~--~~dliV~G~~~~~------~~~~~----~~Gs~~~~ll~~-~~~pVlvV  135 (135)
T d2z3va1          81 LLEGVP--AEAILQAARAE--KADLIVMGTRGLG------ALGSL----FLGSQSQRVVAE-APCPVLLV  135 (135)
T ss_dssp             EEESCH--HHHHHHHHHHT--TCSEEEEESSCSS------SCBCS----SCBHHHHHHHHH-CSSCEEEE
T ss_pred             EEcCCh--HHHHHHHhhhh--heeeEEeccCCCC------ccccc----ccCcHHHHHHHh-CCCCEEeC
Confidence            222222  33455555544  8999999998742      22232    478888888854 56789987

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.27  E-value=2.5e-06  Score=77.75  Aligned_cols=132  Identities=15%  Similarity=0.198  Sum_probs=80.3

Q ss_pred             ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCC----------CC-CCC---chh-------HHHHH
Q 036516          552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPS----------TE-MPD---DHE-------LDNQA  610 (709)
Q Consensus       552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~----------~~-~~~---~~~-------~d~~~  610 (709)
                      .+||+++.-|++.+++|+.+|..+|+..+++++++|+.++......          .. ...   +.+       .-++.
T Consensus         3 ~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (160)
T d1mjha_           3 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK   82 (160)
T ss_dssp             CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             cCeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999873221100          00 000   011       11233


Q ss_pred             HHHHhhhcCCCcEEEEEEeecCh---hhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCC
Q 036516          611 FDEFKDSMVGNKIIFREEIVKDG---IGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSND  687 (709)
Q Consensus       611 l~~~~~~~~~~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~  687 (709)
                      ++++........+.+.... ..|   .++.+.+++  .++||++||+++..      ++.+|    -+|-..+-+... .
T Consensus        83 l~~~~~~~~~~gv~~~~~~-~~G~~~~~I~~~a~~--~~~dliV~G~~~~~------~~~~~----~~GS~a~~vl~~-s  148 (160)
T d1mjha_          83 MENIKKELEDVGFKVKDII-VVGIPHEEIVKIAED--EGVDIIIMGSHGKT------NLKEI----LLGSVTENVIKK-S  148 (160)
T ss_dssp             HHHHHHHHHHTTCEEEEEE-EEECHHHHHHHHHHH--TTCSEEEEESCCSS------CCTTC----SSCHHHHHHHHH-C
T ss_pred             HHHHHHHHHhcCCeEEEEE-EeccHHHHHhhhhhc--cccceEEeccCCCC------ccccc----ccCcHHHHHHhc-C
Confidence            4444332211123333332 234   224444443  47999999998742      12222    368788888764 5


Q ss_pred             CcceEEEeec
Q 036516          688 EFSVLVVQQQ  697 (709)
Q Consensus       688 ~~SvLvvqq~  697 (709)
                      +|+||||+.+
T Consensus       149 ~~pVlvV~~~  158 (160)
T d1mjha_         149 NKPVLVVKRK  158 (160)
T ss_dssp             CSCEEEECCC
T ss_pred             CCCEEEEcCC
Confidence            6799999875

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Universal stress protein A, UspA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.19  E-value=3.1e-06  Score=75.16  Aligned_cols=129  Identities=15%  Similarity=0.122  Sum_probs=80.4

Q ss_pred             ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCC--CCCC------CCCCCchhHHHHHHHHHhhhcCCCcE
Q 036516          552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQ--NRPS------TEMPDDHELDNQAFDEFKDSMVGNKI  623 (709)
Q Consensus       552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~--~~~~------~~~~~~~~~d~~~l~~~~~~~~~~~v  623 (709)
                      ++||+++.-|.++++.|+++|.++|+..+.+++++|+.++..  ....      +..+..++.-.+.+++...+......
T Consensus         2 yk~ILv~vD~s~~s~~al~~A~~~a~~~~~~v~~lhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (140)
T d1jmva_           2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPIS   81 (140)
T ss_dssp             CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSSCCC
T ss_pred             CCeEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEEEeeecccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence            358999999999999999999999999999999999987211  1000      00011112233444444443321211


Q ss_pred             EEEEEeecChhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEee
Q 036516          624 IFREEIVKDGIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQ  696 (709)
Q Consensus       624 ~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq  696 (709)
                      .+....-.-.+++.+.+++.  ++||+|||+++..          |.   .||..-|.+... ..|+||||..
T Consensus        82 ~~~~~~~~~~~~I~~~a~~~--~~dliV~G~~~~~----------~~---~lgs~~~~li~~-~~~pVliVp~  138 (140)
T d1jmva_          82 EKLSGSGDLGQVLSDAIEQY--DVDLLVTGHHQDF----------WS---KLMSSTRQVMNT-IKIDMLVVPL  138 (140)
T ss_dssp             CEEEEEECHHHHHHHHHHHT--TCCEEEEEECCCC----------HH---HHHHHHHHHHTT-CCSEEEEEEC
T ss_pred             EEEEEecCHHHHHHHhhhhc--hhhEEEeccCCCC----------CC---CcccHHHHHHhc-cCCCEEEEec
Confidence            11111111234466666654  7999999987642          11   278888888875 6679999974

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Rv1636
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.85  E-value=2e-05  Score=70.30  Aligned_cols=134  Identities=13%  Similarity=0.114  Sum_probs=76.6

Q ss_pred             ceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeeecCCCCCC-------CCCCCchhHHHHHHHHHhhhcCCCcEE
Q 036516          552 LYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFITTDQNRPS-------TEMPDDHELDNQAFDEFKDSMVGNKII  624 (709)
Q Consensus       552 ~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~-------~~~~~~~~~d~~~l~~~~~~~~~~~v~  624 (709)
                      +++|+++.-|+++++.|+++|.++|+..+..+++.++.++....+.       ...+.+++..++.+++++.........
T Consensus         5 yk~ILv~vD~s~~s~~al~~A~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   84 (147)
T d1tq8a_           5 YKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGAK   84 (147)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHHHHTTTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTCC
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHhcCCCEEEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999988888877776542111000       001112233444555555432211122


Q ss_pred             EEEEeecChhhHHHHHHhh-hcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEee
Q 036516          625 FREEIVKDGIGTTQVIQAF-AETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQ  696 (709)
Q Consensus       625 y~e~~v~~g~~~~~~i~~~-~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq  696 (709)
                      ..+..+..|......++.. ..++||+++|+++..      ++    +..-+|-+.+-++-. .+++||||..
T Consensus        85 ~~~~~~~~G~~~~~i~~~a~~~~~dlIv~g~~~~~------~~----~~~l~Gs~~~~ll~~-~~~pVlvV~~  146 (147)
T d1tq8a_          85 NVEERPIVGAPVDALVNLADEEKADLLVVGNVGLS------TI----AGRLLGSVPANVSRR-AKVDVLIVHT  146 (147)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCC------SH----HHHHTBBHHHHHHHH-TTCEEEEECC
T ss_pred             cEEEEEEecChHHHHHHhhhccceeEEEecCCCCC------cc----cccccccHHHHHHHh-CCCCEEEEec
Confidence            2344444553222222222 247999999998742      11    112477777777754 5569999863

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Aq 178
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.78  E-value=1.6e-05  Score=69.92  Aligned_cols=40  Identities=15%  Similarity=0.246  Sum_probs=37.4

Q ss_pred             cceEEEEeeccCcChHHHHHHHHHHhcCCCeEEEEEEeee
Q 036516          551 LLYHIVMLFIGGADDREALAYSRRMAEHPNTSLTVVWFIT  590 (709)
Q Consensus       551 ~~~~V~~~f~Gg~ddreAl~~a~rma~~~~~~ltvl~v~~  590 (709)
                      ..++|+++.-|.++++.|+++|.++|+..+++++++|++.
T Consensus         3 ~mk~ILv~~D~S~~s~~al~~A~~~a~~~~a~l~llhv~~   42 (138)
T d1q77a_           3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLE   42 (138)
T ss_dssp             CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECH
T ss_pred             CCCEEEEEEeCCHHHHHHHHHHHHhhhhccceEEEEEEcc
Confidence            4578999999999999999999999999999999999985

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.62  E-value=0.0044  Score=56.09  Aligned_cols=122  Identities=10%  Similarity=0.111  Sum_probs=65.8

Q ss_pred             ChHHHHHHHHHHhcCC---CeEEEEEEeeecCCC--CCC----CC-------CCCchhHHHHHHHHHhhhcCCCcEEEEE
Q 036516          564 DDREALAYSRRMAEHP---NTSLTVVWFITTDQN--RPS----TE-------MPDDHELDNQAFDEFKDSMVGNKIIFRE  627 (709)
Q Consensus       564 ddreAl~~a~rma~~~---~~~ltvl~v~~~~~~--~~~----~~-------~~~~~~~d~~~l~~~~~~~~~~~v~y~e  627 (709)
                      .++.|+++|...+...   ...++++|+.++...  ...    ..       .+..++..++.+++++.......+.+.-
T Consensus        22 ~S~~Al~wal~~~~~~~~~~~~L~~vhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  101 (171)
T d2gm3a1          22 SCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEA  101 (171)
T ss_dssp             HHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHHHHHCCCCCcEEEEEEeccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Confidence            5799999998887543   447999998762111  000    00       1122334456666666443211222322


Q ss_pred             EeecC--hhhHHHHHHhhhcCCcEEEEecCCCCCcccccccCcCCCCCccchhhhhhhcCCCCcceEEEeecC
Q 036516          628 EIVKD--GIGTTQVIQAFAETFDLFIVGKNHDPCCKATLGLSEWIEYPELGILGDTLVNSNDEFSVLVVQQQP  698 (709)
Q Consensus       628 ~~v~~--g~~~~~~i~~~~~~~DLiiVG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~SvLvvqq~~  698 (709)
                      .++++  ..++.+.+++  .++||+++|+++..  .       |.. --+|-+-+.+... ..|+||||+--.
T Consensus       102 ~v~~G~~~~~I~~~a~~--~~~dlIV~G~~g~~--~-------~~~-~~lGSv~~~vi~~-~~cpVlvV~~~~  161 (171)
T d2gm3a1         102 WIKTGDPKDVICQEVKR--VRPDFLVVGSRGLG--R-------FQK-VFVGTVSAFCVKH-AECPVMTIKRNA  161 (171)
T ss_dssp             EEEESCHHHHHHHHHHH--HCCSEEEEEECCCC------------------CHHHHHHHH-CSSCEEEEECCG
T ss_pred             EEEeCChHHHHHHHHhh--cCCcEEEeccCCcc--c-------ccc-CccCcHHHHHHhC-CCCCEEEEeCCC
Confidence            22221  3334444454  48999999998742  1       111 2378899998875 567999997543