Citrus Sinensis ID: 036517

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------
Protein Sequence
MIPLYRSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK
Secondary Structure (PSIPRED)
ccccccHHHHHHcccccEEEccccccccccccccccccccccEEccccccccccccccEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccHHccEEEcccccccccccHHHcccc
Coil and Loop (DISEMBL)
MIPLYRSHLTILFRnlyltgsvppefgdslHLQVFYLennkrtdsipeslgrfgCLIKLNlarnklsgsiptsfgnlk
Flexible Loop (DISEMBL)
MIPLYRSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNlarnklsgsiptsfgnlk
Low Complexity Region (SEG)
MIPLYRSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK
Disordered region (IsUnstruct)
***LYRSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARN**************
Disordered Region (DISOPRED)
MIPLYRSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK
Disordered Region (DISEMBL)
MIPLYRSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSI********
Disordered Region (DISPRO)
MIPLYRSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG*LK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIPLYRSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	78	2.2.26 [Sep-21-2011]
Q9LYN8	1192	Leucine-rich repeat recep	yes	no	0.923	0.060	0.534	2e-12
Q9LP24	1120	Probable leucine-rich rep	no	no	0.615	0.042	0.452	4e-09
Q9FL28	1173	LRR receptor-like serine/	no	no	0.756	0.050	0.483	1e-08
C0LGU1	959	Probable LRR receptor-lik	no	no	0.923	0.075	0.452	3e-08
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.756	0.056	0.433	4e-07
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.743	0.054	0.459	4e-07
Q9SKG5	620	Somatic embryogenesis rec	no	no	0.769	0.096	0.444	7e-07
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.794	0.049	0.382	1e-06
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.807	0.062	0.406	2e-06
Q9SGP2	996	Receptor-like protein kin	no	no	0.705	0.055	0.446	2e-06

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 7   SHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
           ++LTIL      LTGS+P E G+SL LQ   L NN+    IPES G  G L+KLNL +NK
Sbjct: 628 TNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNK 687

Query: 66  LSGSIPTSFGNLK 78
           L G +P S GNLK
Sbjct: 688 LDGPVPASLGNLK 700

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 42/73 (57%)

Query: 6   RSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
            S + +   N  LTGS+P   G+  +L + YL  N  T  IP  LG    +I L L  NK
Sbjct: 318 ESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNK 377

Query: 66  LSGSIPTSFGNLK 78
           L+GSIP+SFGNLK
Sbjct: 378 LTGSIPSSFGNLK 390

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 37/60 (61%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           LTG +P   GD +HLQ+F    N  T SIP S+G    L  L+L+ N+L+G IP  FGNL
Sbjct: 180 LTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNL 239

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGU1|Y5374_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 7   SHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
           S+LTIL F    LTG +PPE G+  HL    L  N+ T S+P+ LG    L+ L +  N+
Sbjct: 101 SNLTILNFMWNDLTGQIPPELGNLTHLIFLLLSGNQLTGSLPQELGSLSNLLILQIDYNE 160

Query: 66  LSGSIPTSFGNLK 78
           +SG +PTS  NLK
Sbjct: 161 ISGKLPTSLANLK 173

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 36/60 (60%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           L G +PPE GD  +L   +L  NK   SIP  +GR   + ++ +  N L+G IP+SFGNL
Sbjct: 154 LVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNL 213

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 35/61 (57%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           LTG +P + G  + L+   L +N  T  IP  L     LI L L +NKLSGSIP+  GNL
Sbjct: 320 LTGDIPGDLGKLVWLEQLQLSDNMFTGQIPWELSNCSSLIALQLDKNKLSGSIPSQIGNL 379

Query: 78  K 78
           K
Sbjct: 380 K 380

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SKG5|SERK4_ARATH Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 36/63 (57%)

Query: 15  NLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74
           N  L+G + PE G  L+LQ   L +N  T  IPE LG    L+ L+L  N +SG IP+S 
Sbjct: 84  NAKLSGKLVPELGQLLNLQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSL 143

Query: 75  GNL 77
           G L
Sbjct: 144 GKL 146

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 37/68 (54%)

Query: 10  TILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGS 69
           +++ ++ YL G +P E G+   L VF    N    +IP  LGR   L  LNLA N L+G 
Sbjct: 195 SLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGE 254

Query: 70  IPTSFGNL 77
           IP+  G +
Sbjct: 255 IPSQLGEM 262

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 35/64 (54%)

Query: 15  NLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74
           N  LTG +PPE G    L   +L+ N  T +I + LG    L  ++L+ N  +G IPTSF
Sbjct: 248 NCGLTGEIPPEIGKLQKLDTLFLQVNAFTGTITQELGLISSLKSMDLSNNMFTGEIPTSF 307

Query: 75  GNLK 78
             LK
Sbjct: 308 SQLK 311

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 34/56 (60%)

Query: 22  VPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           +PPEFG+  +L+V +L        IP+SLG+   L+ L+LA N L G IP S G L
Sbjct: 197 IPPEFGNLTNLEVMWLTECHLVGQIPDSLGQLSKLVDLDLALNDLVGHIPPSLGGL 252

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
225455406	1299	PREDICTED: leucine-rich repeat receptor	0.974	0.058	0.562	7e-12
297741086	961	unnamed protein product [Vitis vinifera]	0.974	0.079	0.562	7e-12
147816099	1147	hypothetical protein VITISV_015708 [Viti	0.974	0.066	0.562	7e-12
15240747	1192	leucine-rich repeat receptor protein kin	0.923	0.060	0.534	8e-11
23304947	1192	extra sporogenous cells [Arabidopsis tha	0.923	0.060	0.534	8e-11
224136952	1215	predicted protein [Populus trichocarpa]	0.756	0.048	0.573	9e-11
356534151	1269	PREDICTED: leucine-rich repeat receptor	0.743	0.045	0.557	3e-10
297806755	1180	extra sporogenous cells [Arabidopsis lyr	0.923	0.061	0.534	3e-10
255539505	1303	leucine-rich repeat receptor protein kin	0.756	0.045	0.573	4e-10
356574479	1268	PREDICTED: leucine-rich repeat receptor	0.743	0.045	0.540	1e-09

>gi|225455406|ref|XP_002273978.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 52/80 (65%), Gaps = 4/80 (5%)

Query: 2   IPLYRSHLTIL----FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLI 57
           IP+  S LT L         LTGS+P + G SL LQ  YL NN+ T +IPESLGR   L+
Sbjct: 672 IPISLSRLTNLTTLDLSGNLLTGSIPLKLGYSLKLQGLYLGNNQLTGTIPESLGRLSSLV 731

Query: 58  KLNLARNKLSGSIPTSFGNL 77
           KLNL  N+LSGSIP SFGNL
Sbjct: 732 KLNLTGNQLSGSIPFSFGNL 751

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741086|emb|CBI31817.3| unnamed protein product [Vitis vinifera]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 52/80 (65%), Gaps = 4/80 (5%)

Query: 2   IPLYRSHLTIL----FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLI 57
           IP+  S LT L         LTGS+P + G SL LQ  YL NN+ T +IPESLGR   L+
Sbjct: 385 IPISLSRLTNLTTLDLSGNLLTGSIPLKLGYSLKLQGLYLGNNQLTGTIPESLGRLSSLV 444

Query: 58  KLNLARNKLSGSIPTSFGNL 77
           KLNL  N+LSGSIP SFGNL
Sbjct: 445 KLNLTGNQLSGSIPFSFGNL 464

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816099|emb|CAN61953.1| hypothetical protein VITISV_015708 [Vitis vinifera]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 52/80 (65%), Gaps = 4/80 (5%)

Query: 2   IPLYRSHLTIL----FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLI 57
           IP+  S LT L         LTGS+P + G SL LQ  YL NN+ T +IPESLGR   L+
Sbjct: 672 IPISLSRLTNLTTLDLSGNLLTGSIPLKLGYSLKLQGLYLGNNQLTGTIPESLGRLSSLV 731

Query: 58  KLNLARNKLSGSIPTSFGNL 77
           KLNL  N+LSGSIP SFGNL
Sbjct: 732 KLNLTGNQLSGSIPFSFGNL 751

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240747|ref|NP_196345.1| leucine-rich repeat receptor protein kinase EXS [Arabidopsis thaliana] gi|30913045|sp|Q9LYN8.1|EXS_ARATH RecName: Full=Leucine-rich repeat receptor protein kinase EXS; AltName: Full=Extra sporogenous cells protein; AltName: Full=Protein EXCESS MICROSPOROCYTES 1; Flags: Precursor gi|7546706|emb|CAB87284.1| receptor-like protein kinase-like protein [Arabidopsis thaliana] gi|22138765|emb|CAD32463.1| receptor-like protein kinase-like protein [Arabidopsis thaliana] gi|224589665|gb|ACN59364.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332003749|gb|AED91132.1| leucine-rich repeat receptor protein kinase EXS [Arabidopsis thaliana]

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 7   SHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
           ++LTIL      LTGS+P E G+SL LQ   L NN+    IPES G  G L+KLNL +NK
Sbjct: 628 TNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNK 687

Query: 66  LSGSIPTSFGNLK 78
           L G +P S GNLK
Sbjct: 688 LDGPVPASLGNLK 700

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23304947|emb|CAD42912.1| extra sporogenous cells [Arabidopsis thaliana]

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 7   SHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
           ++LTIL      LTGS+P E G+SL LQ   L NN+    IPES G  G L+KLNL +NK
Sbjct: 628 TNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNK 687

Query: 66  LSGSIPTSFGNLK 78
           L G +P S GNLK
Sbjct: 688 LDGPVPASLGNLK 700

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136952|ref|XP_002322457.1| predicted protein [Populus trichocarpa] gi|222869453|gb|EEF06584.1| predicted protein [Populus trichocarpa]

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 43/61 (70%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           LTGS+PPE GDS  LQ  YL NN+ + +IP  LG  G L+KLNL  N+L G +P SFG+L
Sbjct: 673 LTGSIPPELGDSSKLQGLYLGNNQLSGTIPGRLGVLGSLVKLNLTGNQLYGPVPRSFGDL 732

Query: 78  K 78
           K
Sbjct: 733 K 733

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534151|ref|XP_003535621.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Glycine max]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 42/61 (68%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           L+GS+P EFG  L LQ  YL  N+ + +IPES G+   L+KLNL  NKLSG IP SF N+
Sbjct: 665 LSGSIPQEFGGVLKLQGLYLGQNQLSGTIPESFGKLSSLVKLNLTGNKLSGPIPVSFQNM 724

Query: 78  K 78
           K
Sbjct: 725 K 725

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806755|ref|XP_002871261.1| extra sporogenous cells [Arabidopsis lyrata subsp. lyrata] gi|297317098|gb|EFH47520.1| extra sporogenous cells [Arabidopsis lyrata subsp. lyrata]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 7   SHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
           ++LTIL      LTGS+P E G SL LQ   L NN+    IPES G    L+KLNL +NK
Sbjct: 616 TNLTILDLSGNALTGSIPKEMGHSLKLQGLNLANNQLNGYIPESFGLLDSLVKLNLTKNK 675

Query: 66  LSGSIPTSFGNLK 78
           L GS+P S GNLK
Sbjct: 676 LDGSVPASLGNLK 688

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539505|ref|XP_002510817.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] gi|223549932|gb|EEF51419.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 43/61 (70%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           L+G +P EFG S  LQ  YL  N+ + +IPE+LG  G L+KLNL  NKL GS+P SFGNL
Sbjct: 695 LSGPIPLEFGHSSKLQGLYLGKNQLSGAIPETLGGLGSLVKLNLTGNKLYGSVPLSFGNL 754

Query: 78  K 78
           K
Sbjct: 755 K 755

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574479|ref|XP_003555374.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Glycine max]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 41/61 (67%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           L+GS+P E G  L LQ  YL  N+ + +IPES G+   L+KLNL  NKLSG IP SF N+
Sbjct: 664 LSGSIPQELGGVLKLQGLYLGQNQLSGTIPESFGKLSSLVKLNLTGNKLSGPIPVSFQNM 723

Query: 78  K 78
           K
Sbjct: 724 K 724

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.923	0.060	0.534	2.3e-12
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.923	0.064	0.458	2.6e-09
TAIR|locus:2091353	1016	AT3G28040 [Arabidopsis thalian	0.948	0.072	0.426	2.1e-08
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.769	0.051	0.483	3.2e-08
TAIR|locus:2084016	937	AT3G53590 [Arabidopsis thalian	0.935	0.077	0.4	1.1e-07
TAIR|locus:2178968	218	AT5G21090 [Arabidopsis thalian	0.820	0.293	0.437	1.4e-07
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.782	0.075	0.475	1.4e-07
TAIR|locus:2009288	966	AT1G34420 [Arabidopsis thalian	0.769	0.062	0.466	1.8e-07
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.846	0.063	0.462	2e-07
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.897	0.082	0.426	2.5e-07

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 39/73 (53%), Positives = 47/73 (64%)

Query:     7 SHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
             ++LTIL      LTGS+P E G+SL LQ   L NN+    IPES G  G L+KLNL +NK
Sbjct:   628 TNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNK 687

Query:    66 LSGSIPTSFGNLK 78
             L G +P S GNLK
Sbjct:   688 LDGPVPASLGNLK 700

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 2.6e-09, P = 2.6e-09
 Identities = 33/72 (45%), Positives = 42/72 (58%)

Query:     7 SHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKL 66
             S + +   N  LTGS+P   G+  +L + YL  N  T  IP  LG    +I L L  NKL
Sbjct:   319 SMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKL 378

Query:    67 SGSIPTSFGNLK 78
             +GSIP+SFGNLK
Sbjct:   379 TGSIPSSFGNLK 390

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2091353 AT3G28040 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 32/75 (42%), Positives = 44/75 (58%)

Query:     5 YRSHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLAR 63
             +  +LT+L  RN  L GSVP +  +S  LQ+  L+ N  T SIPE +G    L  L+L+ 
Sbjct:   461 FLQNLTVLDLRNSALIGSVPADICESQSLQILQLDGNSLTGSIPEGIGNCSSLKLLSLSH 520

Query:    64 NKLSGSIPTSFGNLK 78
             N L+G IP S  NL+
Sbjct:   521 NNLTGPIPKSLSNLQ 535

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 29/60 (48%), Positives = 37/60 (61%)

Query:    18 LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
             LTG +P   GD +HLQ+F    N  T SIP S+G    L  L+L+ N+L+G IP  FGNL
Sbjct:   180 LTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNL 239

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2084016 AT3G53590 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 30/75 (40%), Positives = 43/75 (57%)

Query:     4 LYRSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLAR 63
             LY   L +++ NL  TG +P E G    L++  L  NK T S+P  LG    L +L +  
Sbjct:   103 LYLEILDVMWNNL--TGRIPLEIGRISSLKLLLLNGNKFTGSLPPELGNLQNLNRLQVDE 160

Query:    64 NKLSGSIPTSFGNLK 78
             N ++GS+P SFGNL+
Sbjct:   161 NNITGSVPFSFGNLR 175

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2178968 AT5G21090 [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 28/64 (43%), Positives = 34/64 (53%)

Query:    15 NLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74
             N  L+G + PE G   HLQ   L  N    +IP  LG    LI L+L  N L+G +PTS 
Sbjct:    79 NSNLSGHLAPELGKLEHLQYLELYKNNIQGTIPSELGNLKNLISLDLYNNNLTGIVPTSL 138

Query:    75 GNLK 78
             G LK
Sbjct:   139 GKLK 142

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 132 (51.5 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 29/61 (47%), Positives = 37/61 (60%)

Query:    18 LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
             L+G +P   G+   L V  L NN  + +IP SLG+   L  L LA N LSGSIP+SFG L
Sbjct:   138 LSGEIPAALGNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFGQL 197

Query:    78 K 78
             +
Sbjct:   198 R 198

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2009288 AT1G34420 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 28/60 (46%), Positives = 37/60 (61%)

Query:    19 TGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK 78
             TG +PP FG+   LQV  L+ NK T  IP+++     L+ LN++ N LSGSIP S   LK
Sbjct:   405 TGILPPAFGNLSRLQVIKLQQNKLTGEIPDTIAFLSNLLILNISCNSLSGSIPPSLSQLK 464

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 31/67 (46%), Positives = 40/67 (59%)

Query:    12 LFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71
             ++ NL LTG +P  FG+   L   YL  N  + SIP  +G    L +L L RN L+G IP
Sbjct:   197 IYDNL-LTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIP 255

Query:    72 TSFGNLK 78
             +SFGNLK
Sbjct:   256 SSFGNLK 262

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 32/75 (42%), Positives = 40/75 (53%)

Query:     7 SHLTILFRNLYLT---GSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLAR 63
             SHLT++  NLY     G +P   G+   L+   L NN  T  IP SLG    L+ L L  
Sbjct:   134 SHLTLV--NLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFS 191

Query:    64 NKLSGSIPTSFGNLK 78
             N+L G IP S G+LK
Sbjct:   192 NRLVGKIPDSIGDLK 206

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007369001 SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (1045 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	78
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 9e-10
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 7   SHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKL 66
           +HL +++ NL  TG +P   G+  +LQ  +L  NK +  IP S+     LI L+L+ N L
Sbjct: 239 NHLDLVYNNL--TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296

Query: 67  SGSIP 71
           SG IP
Sbjct: 297 SGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 2   IPLYRSHLTIL-FRNL---YLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLI 57
           IP   ++LT L F  L    L G +P E G    L+  YL  N  +  IP  +G    L 
Sbjct: 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Query: 58  KLNLARNKLSGSIPTSFGNLK 78
            L+L  N L+G IP+S GNLK
Sbjct: 240 HLDLVYNNLTGPIPSSLGNLK 260

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 3e-09
 Identities = 25/58 (43%), Positives = 32/58 (55%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG 75
           + G++PP  G    L+V  L  N    SIPESLG+   L  LNL  N LSG +P + G
Sbjct: 454 IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 6e-07
 Identities = 25/63 (39%), Positives = 31/63 (49%)

Query: 15  NLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74
           N  L G +P +     HLQ   L  N    +IP SLG    L  L+L+ N  +GSIP S 
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 75  GNL 77
           G L
Sbjct: 487 GQL 489

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 20/60 (33%), Positives = 27/60 (45%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           L G +P    +   L+   L +N+    IP  LG+   L  + L  N LSG IP   G L
Sbjct: 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.8 bits (98), Expect = 6e-06
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 12  LFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71
           L RN + +G+VP + G    L    L  NK +  IP+ L     L+ L+L+ N+LSG IP
Sbjct: 482 LSRNQF-SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540

Query: 72  TSFGNL 77
            SF  +
Sbjct: 541 ASFSEM 546

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 7e-06
 Identities = 21/61 (34%), Positives = 34/61 (55%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           L+G +P E      L    L +N+ +  IP S      L +L+L++N+LSG IP + GN+
Sbjct: 511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV 570

Query: 78  K 78
           +
Sbjct: 571 E 571

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 24/58 (41%), Positives = 27/58 (46%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG 75
            +G +P   G   +L V  L  N  T  IPE L   G L KL L  N L G IP S G
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 26/61 (42%), Positives = 31/61 (50%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           L+G +P E G    L    L  N  T  IP SLG    L  L L +NKLSG IP S  +L
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 78  K 78
           +
Sbjct: 284 Q 284

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 25/69 (36%), Positives = 32/69 (46%)

Query: 10  TILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGS 69
           T+   N  L+G +P + G    L+V  L  N     IP SL     L  L LA N+L G 
Sbjct: 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ 203

Query: 70  IPTSFGNLK 78
           IP   G +K
Sbjct: 204 IPRELGQMK 212

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 12  LFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71
           LF N   TG +P        LQV  L +NK +  IP++LG+   L  L+L+ N L+G IP
Sbjct: 315 LFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373

Query: 72  TSF---GNL 77
                 GNL
Sbjct: 374 EGLCSSGNL 382

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 12  LFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71
           L RN +  G +P  FG S  L+   L  N+ + ++P  LG    L++L L+ NKLSG IP
Sbjct: 459 LARNKFF-GGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516

Query: 72  TSFGNLK 78
               + K
Sbjct: 517 DELSSCK 523

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS 73
           L+G +P  F +   L    L  N+ +  IP++LG    L+++N++ N L GS+P++
Sbjct: 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 15  NLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74
           N   TGS+P   G   +L+   L NN  +  IP  +G F  L  L+L  N L G IP S 
Sbjct: 127 NNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

Query: 75  GNL 77
            NL
Sbjct: 185 TNL 187

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 36.0 bits (83), Expect = 6e-04
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           LTG +P     S +L    L +N     IP+SLG    L ++ L  N  SG +P+ F  L
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	78
PLN03150	623	hypothetical protein; Provisional	99.45
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.27
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.23
PLN03150	623	hypothetical protein; Provisional	99.22
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.18
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.96
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.94
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.51
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.43
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.39
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.38
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.37
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.3
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.15
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.15
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.14
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.07
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	98.04
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.01
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.96
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.84
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.73
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.71
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.69
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.64
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.63
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.61
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.56
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.55
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.48
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	97.39
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.2
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.07
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	97.04
smart00370	26	LRR Leucine-rich repeats, outliers.	97.04
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.88
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.67
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.59
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.22
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.88
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.7
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.57
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	95.42
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	94.99
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	94.62
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.59
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.51
PRK15386	426	type III secretion protein GogB; Provisional	93.48
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	93.36
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	93.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	93.02
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	92.94
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.69
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	92.16
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.62
KOG2123	388	consensus Uncharacterized conserved protein [Funct	91.19
PRK15386	426	type III secretion protein GogB; Provisional	89.64
KOG2982	418	consensus Uncharacterized conserved protein [Funct	89.13
KOG2982	418	consensus Uncharacterized conserved protein [Funct	88.4
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	88.23
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	87.66
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	86.79
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	86.35
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	81.7
KOG2123	388	consensus Uncharacterized conserved protein [Funct	80.11

>PLN03150 hypothetical protein; Provisional

Probab=99.45  E-value=1e-13  Score=85.68  Aligned_cols=75  Identities=40%  Similarity=0.587  Sum_probs=64.7

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      +|..+..++.|+    ++|.+.|.+|..+..+++|+.|++++|.+.|.+|+.++.+++|+.|++++|.+.|.+|..++.
T Consensus       434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~  512 (623)
T PLN03150        434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG  512 (623)
T ss_pred             CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence            455666666665    889999999999999999999999999999999999999999999999999999999987654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.27  E-value=8.1e-12  Score=79.98  Aligned_cols=62  Identities=32%  Similarity=0.574  Sum_probs=38.0

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCc
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG   75 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~   75 (78)
                      ++|.+.+.+|+.+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.
T Consensus       507 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  568 (968)
T PLN00113        507 SENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG  568 (968)
T ss_pred             cCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHh
Confidence            55666666666666666666666666666666666666666666666666666655555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.23  E-value=6.4e-12  Score=56.68  Aligned_cols=58  Identities=31%  Similarity=0.358  Sum_probs=49.7

Q ss_pred             hhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcc
Q 036517            9 LTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKL   66 (78)
Q Consensus         9 l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l   66 (78)
                      ++.|. ++|.++...+..|..+++|+.+++++|.+....+..|..+++|++|++++|++
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            45555 88899966667899999999999999999966667899999999999999975

...

>PLN03150 hypothetical protein; Provisional

Probab=99.22  E-value=1.2e-11  Score=76.64  Aligned_cols=64  Identities=39%  Similarity=0.569  Sum_probs=60.4

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      ++|.+.+.+|..+..+++|+.|++++|.+.|.+|..++.+++|+.|++++|.+.|.+|..++++
T Consensus       426 ~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L  489 (623)
T PLN03150        426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL  489 (623)
T ss_pred             CCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence            7888899999999999999999999999999999999999999999999999999999887765

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.18  E-value=2.3e-11  Score=77.91  Aligned_cols=59  Identities=31%  Similarity=0.478  Sum_probs=24.7

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      ++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+.+|++|++++|.+.+.+|.
T Consensus       172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  230 (968)
T PLN00113        172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY  230 (968)
T ss_pred             ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence            34444444444444444444444444444433444444444444444444444333333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.96  E-value=9.2e-10  Score=46.65  Aligned_cols=40  Identities=35%  Similarity=0.477  Sum_probs=33.8

Q ss_pred             CCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517           30 LHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP   71 (78)
Q Consensus        30 ~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p   71 (78)
                      ++|++|++++|.++ .+|..++.+++|+.|++++|.++ .++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence            47899999999999 78888999999999999999988 654

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.94  E-value=9.4e-11  Score=63.12  Aligned_cols=73  Identities=27%  Similarity=0.470  Sum_probs=58.4

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      +|..|..|+.|+    +.|.+. .+|..++++++|+.|.+..|.+- .+|..++.+.+|+.|.+.+|++. .+|++++.+
T Consensus       119 lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  119 LPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             CCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence            566666666666    677777 67888888888888888888877 78888888888888888888888 888877754

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.86  E-value=5.9e-10  Score=60.11  Aligned_cols=60  Identities=33%  Similarity=0.548  Sum_probs=31.8

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      ++|.++ .+|+.+..+.+|+.|++++|.+. ++|..+..++.|+.|.+.-|++. .+|..||.
T Consensus        41 SHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs  100 (264)
T KOG0617|consen   41 SHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS  100 (264)
T ss_pred             ccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC
Confidence            555555 44555555555555555555555 55555555555555555555554 44554444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.80  E-value=1.4e-09  Score=64.69  Aligned_cols=61  Identities=31%  Similarity=0.463  Sum_probs=52.5

Q ss_pred             CCceeeecCCcccc-CCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517           14 RNLYLTGSVPPEFG-DSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus        14 ~~n~~~~~~p~~~~-~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      +.|.+. .+|.+.. .+.++..||+..|+++ ++|+.+..+.+|.+||+++|.++ .+|.++|++
T Consensus       236 g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl  297 (565)
T KOG0472|consen  236 GENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL  297 (565)
T ss_pred             cccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence            455555 6676655 7899999999999999 99999999999999999999999 899998876

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=1.1e-08  Score=46.04  Aligned_cols=48  Identities=35%  Similarity=0.509  Sum_probs=39.3

Q ss_pred             CCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517           30 LHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus        30 ~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      ++|+.|++++|.+....+..|..+++|++|++++|.++..-|..|..+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l   48 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNL   48 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCC
Confidence            468999999999995555789999999999999999994444566655

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.51  E-value=1.1e-08  Score=64.23  Aligned_cols=73  Identities=30%  Similarity=0.349  Sum_probs=42.2

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      +|.++..+..|.    +.|.+. .+|+.+..+++|+.|++|+|.++ ++.-..+...++++|+++.|.+. .+|..+.++
T Consensus       214 ~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL  290 (1255)
T KOG0444|consen  214 IPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL  290 (1255)
T ss_pred             CCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhh
Confidence            455555555554    666666 56666666777777777776666 44333444445555555555555 555554443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.43  E-value=8.2e-08  Score=57.47  Aligned_cols=53  Identities=26%  Similarity=0.339  Sum_probs=45.5

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      +.|++...-+..+..|.+|..||+.+|.+. .+|..+++|++|++|++++|.+.
T Consensus       489 s~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  489 SNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            457776444444899999999999999999 89999999999999999999997

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.39  E-value=3.7e-08  Score=58.58  Aligned_cols=71  Identities=17%  Similarity=0.270  Sum_probs=55.2

Q ss_pred             CCcccc-hhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEE-EcccCcceeccCCC
Q 036517            2 IPLYRS-HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKL-NLARNKLSGSIPTS   73 (78)
Q Consensus         2 ~p~~~~-~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L-~l~~n~l~~~~p~~   73 (78)
                      ||..+. ..+.++ ..|.++...+.+|..+++|+.||+++|.++..-|..|.++.++..| +.++|+|+ .+|..
T Consensus        61 VP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~  134 (498)
T KOG4237|consen   61 VPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKG  134 (498)
T ss_pred             CcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhh
Confidence            555553 344555 8899996666679999999999999999997788999999888665 45558998 77753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.38  E-value=5.2e-08  Score=61.36  Aligned_cols=72  Identities=25%  Similarity=0.293  Sum_probs=44.2

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCc-hhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIP-ESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      ||..+.++..|.    ++|.+. ..|..+...+++-.|++|+|.+. .+| ..|.+++-|-.||+++|++. .+|+++.+
T Consensus        95 iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR  171 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR  171 (1255)
T ss_pred             CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHH
Confidence            455555544443    666666 56666666666666666666666 444 34566666677777777776 66665544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.37  E-value=8.5e-08  Score=59.27  Aligned_cols=69  Identities=28%  Similarity=0.304  Sum_probs=55.4

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF   74 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~   74 (78)
                      +|+.++.++.|+    ..|++. .+|+++..++ |..||+++|++. .+|-.|.+|..|++|-|.+|.++ +-|.++
T Consensus       181 lpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI  253 (722)
T KOG0532|consen  181 LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI  253 (722)
T ss_pred             chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence            566777777776    667777 6777777444 788999999999 88999999999999999999998 666554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.30  E-value=2e-07  Score=58.14  Aligned_cols=58  Identities=16%  Similarity=0.042  Sum_probs=35.8

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      +.|++...--.++.+++.|+.|+++.|.++...++.|..+++|..|+|++|+++ .+++
T Consensus       277 ~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~  334 (873)
T KOG4194|consen  277 ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDE  334 (873)
T ss_pred             ccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCCh
Confidence            555555444445556666666666666666666666666666666666666666 5443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.15  E-value=2e-07  Score=60.15  Aligned_cols=67  Identities=37%  Similarity=0.503  Sum_probs=53.7

Q ss_pred             hhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCch-hhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            9 LTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPE-SLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         9 l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      +..|. .+|+++...-+.+..+.+|+.|++++|++. .+|. .+.++..|+.|++++|+++ .+|..+..+
T Consensus       361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~  429 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANL  429 (1081)
T ss_pred             HHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhh
Confidence            34444 889998888888889999999999999998 6664 4678889999999999998 888765443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.15  E-value=4.4e-07  Score=58.62  Aligned_cols=72  Identities=29%  Similarity=0.424  Sum_probs=58.1

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      .|..+..+.+|.    +.|.+. ..|.+...+.+|+++++.+|.+. .+|..+..+.+|++||+++|.+. .+|..+..
T Consensus        60 fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~  135 (1081)
T KOG0618|consen   60 FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEV  135 (1081)
T ss_pred             CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHh
Confidence            455555555555    677776 67888889999999999999988 88999999999999999999988 88876543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.14  E-value=5.3e-07  Score=57.71  Aligned_cols=43  Identities=28%  Similarity=0.293  Sum_probs=32.7

Q ss_pred             CCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517           31 HLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF   74 (78)
Q Consensus        31 ~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~   74 (78)
                      .|+.|++++|.++ .+|..+..+++|+.+++++|.+++..|..+
T Consensus       423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            4566777777777 678888888888999999998887665543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.07  E-value=5.7e-07  Score=56.19  Aligned_cols=63  Identities=21%  Similarity=0.119  Sum_probs=38.8

Q ss_pred             ccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517            5 YRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus         5 ~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++..++.|+    +.|.+.+..++.+.-.++|.+|+++.|+++..-+..|..+.+|+.|.|++|++.
T Consensus       288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~  354 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID  354 (873)
T ss_pred             cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence            344444444    777777777777777777888888887777333344555555555555555444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.04  E-value=2.1e-06  Score=30.99  Aligned_cols=22  Identities=55%  Similarity=0.765  Sum_probs=14.4

Q ss_pred             CCCEEEcccCcceeccCCCCcCC
Q 036517           55 CLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus        55 ~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      +|++||+++|.++ .+|..|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            3567777777777 777766653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.03  E-value=1.6e-06  Score=51.95  Aligned_cols=71  Identities=24%  Similarity=0.222  Sum_probs=54.1

Q ss_pred             cchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517            6 RSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus         6 ~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      |..++.|+    ++|.+++.-+.+|.....++.|.+..|++...-...|.++..|++|+|.+|+++-..|..|.+
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~  344 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT  344 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc
Confidence            34455555    888888777777888888888888888887444566888999999999999999666665544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.02  E-value=2.8e-06  Score=35.84  Aligned_cols=35  Identities=31%  Similarity=0.431  Sum_probs=28.4

Q ss_pred             hhhhcc-CCceeeecCCccccCCCCCceEecccCcCC
Q 036517            8 HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRT   43 (78)
Q Consensus         8 ~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~   43 (78)
                      +++.|. ++|.++ .+|+.+..+++|+.|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            355566 889999 67777999999999999999988

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.01  E-value=6.9e-06  Score=44.30  Aligned_cols=51  Identities=31%  Similarity=0.356  Sum_probs=18.5

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhh-hCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESL-GRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~-~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.++. +. .+..++.|+.|++++|.++ .+.+.+ ..+++|+.|++++|++.
T Consensus        50 s~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~  101 (175)
T PF14580_consen   50 SNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKIS  101 (175)
T ss_dssp             TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---
T ss_pred             CCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCC
Confidence            7777773 32 4666777777777777777 444444 35777777777777776

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.96  E-value=6.4e-07  Score=46.87  Aligned_cols=55  Identities=22%  Similarity=0.207  Sum_probs=36.3

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP   71 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p   71 (78)
                      ++|.++ .+|+++..|+.|+.++++.|.+. ..|..+..+.++..|+..+|... .+|
T Consensus        85 ~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid  139 (177)
T KOG4579|consen   85 ANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EID  139 (177)
T ss_pred             chhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCc
Confidence            666666 56666777777777777777776 56666666666667766666554 444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.95  E-value=2.2e-06  Score=53.29  Aligned_cols=70  Identities=23%  Similarity=0.360  Sum_probs=42.0

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCc
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG   75 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~   75 (78)
                      +|.++..+..|.    ..|.+- .+|..+.++..|.+++++.|.++ .+|..+..++ |+.|-+++|+++ .+|+.++
T Consensus        90 lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig  163 (722)
T KOG0532|consen   90 LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIG  163 (722)
T ss_pred             CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccc
Confidence            344444443443    344444 56666777777777777777766 6666665555 666666666666 6666655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.88  E-value=4.4e-06  Score=48.91  Aligned_cols=57  Identities=23%  Similarity=0.246  Sum_probs=46.1

Q ss_pred             hhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517            8 HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus         8 ~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      .++.+. ++|.++ .+.+++.-.+.++.|+++.|.+. .+.. +..+++|+.||+++|.+.
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH
Confidence            455555 888888 67778888899999999999887 4433 788899999999999877

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.84  E-value=4.9e-06  Score=54.13  Aligned_cols=51  Identities=31%  Similarity=0.519  Sum_probs=36.7

Q ss_pred             ccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517           26 FGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus        26 ~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      |..++.|+.||+++|.--+.+|+.++.+.+|++|++++..++ .+|..++++
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~L  617 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNL  617 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHH
Confidence            666777777777776655577777777777777777777777 777666554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.73  E-value=3.8e-05  Score=41.47  Aligned_cols=53  Identities=30%  Similarity=0.330  Sum_probs=26.7

Q ss_pred             CCceeeecCCccc-cCCCCCceEecccCcCCCCC-chhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEF-GDSLHLQVFYLENNKRTDSI-PESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~-~~~~~L~~l~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.++ .+.+.+ ..+++|+.|++++|++...- -..+..+++|+.|++.+|.+.
T Consensus        72 ~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   72 SNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            899998 455555 36899999999999997321 145678899999999999987

>PLN03210 Resistant to P

Probab=97.71  E-value=7.5e-05  Score=49.95  Aligned_cols=47  Identities=19%  Similarity=0.286  Sum_probs=25.2

Q ss_pred             ccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517           26 FGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus        26 ~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      +..+++|+.|++++|.....+|..++.+++|+.|++++|.....+|.
T Consensus       653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence            44455555555555443335566666666666666665432225554

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.69  E-value=1.6e-05  Score=47.18  Aligned_cols=57  Identities=25%  Similarity=0.405  Sum_probs=35.0

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS   73 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~   73 (78)
                      +.|.+. .+|..++.++.|+.|+++.|.+. .+|...+..+.|+.|++++|.+. .+|..
T Consensus       148 ~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~  204 (394)
T COG4886         148 SDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPE  204 (394)
T ss_pred             cccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchh
Confidence            555555 44445666666666666666666 55555555666666666666666 55553

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.64  E-value=8.8e-05  Score=47.83  Aligned_cols=53  Identities=32%  Similarity=0.511  Sum_probs=29.8

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS   73 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~   73 (78)
                      ++|.++ .+|..+.  ++|+.|++++|.+. .+|..+.  +.|+.|++++|.++ .+|..
T Consensus       333 s~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~  385 (754)
T PRK15370        333 GENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPEN  385 (754)
T ss_pred             cCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHh
Confidence            444444 2444332  46666777766666 4555442  46667777776666 55543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.63  E-value=3.5e-05  Score=49.76  Aligned_cols=21  Identities=33%  Similarity=0.570  Sum_probs=10.7

Q ss_pred             CCCEEEcccCcceeccCCCCcC
Q 036517           55 CLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus        55 ~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      .|+.|++++|.++ .+|..+++
T Consensus       423 ~L~~L~Ls~NqLt-~LP~sl~~  443 (788)
T PRK15387        423 GLLSLSVYRNQLT-RLPESLIH  443 (788)
T ss_pred             hhhhhhhccCccc-ccChHHhh
Confidence            3444555555555 55554443

>PLN03210 Resistant to P

Probab=97.61  E-value=0.00016  Score=48.48  Aligned_cols=59  Identities=20%  Similarity=0.174  Sum_probs=27.4

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF   74 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~   74 (78)
                      .++.+. .++..+..+++|+.++++++.....+|. +..+++|+.|++++|.....+|..+
T Consensus       619 ~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si  677 (1153)
T PLN03210        619 QGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI  677 (1153)
T ss_pred             cCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh
Confidence            444444 3444445555555555554432224442 4445555555555543323445443

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.57  E-value=1.7e-05  Score=51.69  Aligned_cols=64  Identities=28%  Similarity=0.406  Sum_probs=51.5

Q ss_pred             chhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517            7 SHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP   71 (78)
Q Consensus         7 ~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p   71 (78)
                      ..++.|.    ++|.--+.+|..++.+-+|++|++++..+. .+|..++++..|.+|++..+.-...+|
T Consensus       568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~  635 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP  635 (889)
T ss_pred             hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc
Confidence            3455554    666666789999999999999999999999 899999999999999998775443443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.56  E-value=0.00011  Score=47.34  Aligned_cols=38  Identities=37%  Similarity=0.543  Sum_probs=18.7

Q ss_pred             CceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCC
Q 036517           32 LQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS   73 (78)
Q Consensus        32 L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~   73 (78)
                      |+.|++++|.+. .+|..+.  .+|+.|++++|.+. .+|..
T Consensus       243 L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~  280 (754)
T PRK15370        243 IQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPEN  280 (754)
T ss_pred             ccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccc
Confidence            344444444444 3333332  35666666666666 55543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.55  E-value=3e-05  Score=27.90  Aligned_cols=21  Identities=38%  Similarity=0.531  Sum_probs=17.5

Q ss_pred             CCceEecccCcCCCCCchhhhC
Q 036517           31 HLQVFYLENNKRTDSIPESLGR   52 (78)
Q Consensus        31 ~L~~l~l~~n~~~~~~p~~~~~   52 (78)
                      +|++|++++|.++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4789999999999 88877765

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.48  E-value=5.6e-06  Score=43.43  Aligned_cols=59  Identities=25%  Similarity=0.323  Sum_probs=47.9

Q ss_pred             CCceeeecCCccccC-CCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCc
Q 036517           14 RNLYLTGSVPPEFGD-SLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG   75 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~-~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~   75 (78)
                      ++|.+. .+|+.|.. ++.+..+++++|.+. .+|+.+..++.|+.++++.|.+. ..|..+.
T Consensus        61 s~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~  120 (177)
T KOG4579|consen   61 SDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIA  120 (177)
T ss_pred             ccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHH
Confidence            778877 56776664 457889999999999 88988999999999999999988 6665543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=97.39  E-value=0.00011  Score=24.81  Aligned_cols=16  Identities=44%  Similarity=0.752  Sum_probs=7.5

Q ss_pred             CCCEEEcccCcceeccC
Q 036517           55 CLIKLNLARNKLSGSIP   71 (78)
Q Consensus        55 ~L~~L~l~~n~l~~~~p   71 (78)
                      +|+.|++++|+++ .+|
T Consensus         2 ~L~~L~l~~n~L~-~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLT-SLP   17 (17)
T ss_dssp             T-SEEEETSS--S-SE-
T ss_pred             ccCEEECCCCCCC-CCc
Confidence            4666666666665 443

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.20  E-value=0.00013  Score=43.37  Aligned_cols=57  Identities=33%  Similarity=0.469  Sum_probs=48.3

Q ss_pred             CCceeeecCCccccCCC-CCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCC
Q 036517           14 RNLYLTGSVPPEFGDSL-HLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS   73 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~-~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~   73 (78)
                      .+|.++ .++....... +|+.++++.|.+. .+|..++.++.|+.|++++|.+. .+|..
T Consensus       124 ~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~  181 (394)
T COG4886         124 DNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKL  181 (394)
T ss_pred             CCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhh
Confidence            677777 6777777774 9999999999999 77778899999999999999998 77764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.07  E-value=3.4e-05  Score=49.71  Aligned_cols=55  Identities=25%  Similarity=0.250  Sum_probs=40.9

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      ++|.+. ....++.-++.|+.|++++|+++ ... .+..++.|.+||+++|.+. .+|.
T Consensus       172 syN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~  226 (1096)
T KOG1859|consen  172 SYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQ  226 (1096)
T ss_pred             chhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccc
Confidence            556665 44455666788888899999888 333 6778888899999998888 6664

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=97.04  E-value=0.00051  Score=25.43  Aligned_cols=19  Identities=42%  Similarity=0.625  Sum_probs=11.9

Q ss_pred             CCCCEEEcccCcceeccCCC
Q 036517           54 GCLIKLNLARNKLSGSIPTS   73 (78)
Q Consensus        54 ~~L~~L~l~~n~l~~~~p~~   73 (78)
                      ++|+.|++++|.+. .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45666666666666 55554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=97.04  E-value=0.00051  Score=25.43  Aligned_cols=19  Identities=42%  Similarity=0.625  Sum_probs=11.9

Q ss_pred             CCCCEEEcccCcceeccCCC
Q 036517           54 GCLIKLNLARNKLSGSIPTS   73 (78)
Q Consensus        54 ~~L~~L~l~~n~l~~~~p~~   73 (78)
                      ++|+.|++++|.+. .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45666666666666 55554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.88  E-value=0.00013  Score=41.91  Aligned_cols=16  Identities=38%  Similarity=0.326  Sum_probs=7.4

Q ss_pred             CCCCCCEEEcccCcce
Q 036517           52 RFGCLIKLNLARNKLS   67 (78)
Q Consensus        52 ~l~~L~~L~l~~n~l~   67 (78)
                      .+..|++|++++|.+.
T Consensus       163 ~~~~L~~L~l~~n~l~  178 (319)
T cd00116         163 ANRDLKELNLANNGIG  178 (319)
T ss_pred             hCCCcCEEECcCCCCc
Confidence            3344455555444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.67  E-value=0.0014  Score=37.42  Aligned_cols=43  Identities=23%  Similarity=0.268  Sum_probs=31.9

Q ss_pred             cccCCCCCceEecccC--cCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           25 EFGDSLHLQVFYLENN--KRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        25 ~~~~~~~L~~l~l~~n--~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      .+..+++|+.|.++.|  ++.+.++-....+++|+++.++.|.++
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            3556778888888888  666666655666688888888888776

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.59  E-value=0.00035  Score=40.14  Aligned_cols=36  Identities=39%  Similarity=0.462  Sum_probs=17.3

Q ss_pred             CceEecccCcCCC----CCchhhhCC-CCCCEEEcccCcce
Q 036517           32 LQVFYLENNKRTD----SIPESLGRF-GCLIKLNLARNKLS   67 (78)
Q Consensus        32 L~~l~l~~n~~~~----~~p~~~~~l-~~L~~L~l~~n~l~   67 (78)
                      |+.|++++|.+.+    .+...+..+ ++|+.|++++|.++
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            5555555555442    112223334 45555666555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.22  E-value=0.0015  Score=38.70  Aligned_cols=51  Identities=25%  Similarity=0.150  Sum_probs=42.7

Q ss_pred             ceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           16 LYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        16 n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ...+|.....+..+..|..+|+++|.++ .+.+.+.-++.++.|++++|.+.
T Consensus       270 ~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~  320 (490)
T KOG1259|consen  270 STSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR  320 (490)
T ss_pred             CccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee
Confidence            3445555555667888999999999999 88899999999999999999987

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.88  E-value=0.0036  Score=37.84  Aligned_cols=40  Identities=35%  Similarity=0.357  Sum_probs=19.2

Q ss_pred             ccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           26 FGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        26 ~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      +..+.+|+.|+++.|.+....  .+..+..|+.|++++|.+.
T Consensus       114 l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~  153 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS  153 (414)
T ss_pred             hhhhhcchheecccccccccc--chhhccchhhheeccCcch
Confidence            444555555555555555221  2333334555555555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.70  E-value=0.0094  Score=34.19  Aligned_cols=58  Identities=21%  Similarity=0.217  Sum_probs=39.7

Q ss_pred             hhhhcc-CCc--eeeecCCccccCCCCCceEecccCcCCCCCchh---hhCCCCCCEEEcccCcce
Q 036517            8 HLTILF-RNL--YLTGSVPPEFGDSLHLQVFYLENNKRTDSIPES---LGRFGCLIKLNLARNKLS   67 (78)
Q Consensus         8 ~l~~l~-~~n--~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~---~~~l~~L~~L~l~~n~l~   67 (78)
                      +|..|. +.|  +..+.++.-...+++|+.++++.|++. . ++.   ...+.+|..|++.+|...
T Consensus        66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhhhcchhhhhcccCCcc
Confidence            344444 777  666666655666799999999999987 2 222   345567778888877654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.57  E-value=0.017  Score=32.43  Aligned_cols=43  Identities=23%  Similarity=0.219  Sum_probs=24.9

Q ss_pred             cccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           25 EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        25 ~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      .+..+++|..|.++.|+++..-|..-..++.|..|.+.+|++.
T Consensus        59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            3555666777777777776333332233455666666666655

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=95.42  E-value=0.011  Score=22.09  Aligned_cols=17  Identities=41%  Similarity=0.735  Sum_probs=12.7

Q ss_pred             CCCEEEcccCcceeccCC
Q 036517           55 CLIKLNLARNKLSGSIPT   72 (78)
Q Consensus        55 ~L~~L~l~~n~l~~~~p~   72 (78)
                      +|+.|++++|++. .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            5677778888877 7776

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=94.99  E-value=0.015  Score=35.22  Aligned_cols=51  Identities=22%  Similarity=0.239  Sum_probs=39.6

Q ss_pred             CceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           15 NLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        15 ~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      .|.+. .+-..+..+.+|..+++..|.+. .+...+..+.+|+.|++++|.+.
T Consensus        81 ~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~  131 (414)
T KOG0531|consen   81 QNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT  131 (414)
T ss_pred             hhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc
Confidence            34444 22334677899999999999999 55554778999999999999988

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=94.62  E-value=0.034  Score=20.74  Aligned_cols=14  Identities=36%  Similarity=0.532  Sum_probs=8.7

Q ss_pred             CCCCEEEcccCcce
Q 036517           54 GCLIKLNLARNKLS   67 (78)
Q Consensus        54 ~~L~~L~l~~n~l~   67 (78)
                      .+|+.|+++.|.++
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            35666666666665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.59  E-value=0.047  Score=30.72  Aligned_cols=53  Identities=23%  Similarity=0.128  Sum_probs=38.6

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCch--hhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPE--SLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~--~~~~l~~L~~L~l~~n~l~   67 (78)
                      ..|.++..-|.--.-+++|..|.+.+|.+. ++.+  ....++.|++|.+-+|...
T Consensus        72 ~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   72 NNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             cCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchh
Confidence            889999554443334678999999999987 4432  3566788999988887665

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.51  E-value=0.029  Score=20.11  Aligned_cols=15  Identities=27%  Similarity=0.430  Sum_probs=9.4

Q ss_pred             CCCCEEEcccCccee
Q 036517           54 GCLIKLNLARNKLSG   68 (78)
Q Consensus        54 ~~L~~L~l~~n~l~~   68 (78)
                      ++|++|++++|.+..
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            567888888887653

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.48  E-value=0.1  Score=32.25  Aligned_cols=40  Identities=30%  Similarity=0.435  Sum_probs=17.6

Q ss_pred             CCceEecccC-cCCCCCchhhhCCCCCCEEEcccC-cceeccCCCC
Q 036517           31 HLQVFYLENN-KRTDSIPESLGRFGCLIKLNLARN-KLSGSIPTSF   74 (78)
Q Consensus        31 ~L~~l~l~~n-~~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~   74 (78)
                      +|+.|.++++ .+. .+|+.+.  .+|+.|++++| .+. .+|..+
T Consensus        73 sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~sL  114 (426)
T PRK15386         73 ELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPESV  114 (426)
T ss_pred             CCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccccc
Confidence            3555555442 232 3443221  34555555555 333 444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=93.36  E-value=0.039  Score=35.97  Aligned_cols=39  Identities=15%  Similarity=0.245  Sum_probs=22.9

Q ss_pred             CCCCceEecccCcCC-CCCchhhhCCCCCCEEEcccCcce
Q 036517           29 SLHLQVFYLENNKRT-DSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        29 ~~~L~~l~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      +|+|+.|.+++-.+. .++-..+.++++|..||+++.+++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence            566777766654432 223344556667777777776665

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=93.05  E-value=0.088  Score=19.73  Aligned_cols=14  Identities=43%  Similarity=0.579  Sum_probs=9.7

Q ss_pred             CCCCEEEcccCcce
Q 036517           54 GCLIKLNLARNKLS   67 (78)
Q Consensus        54 ~~L~~L~l~~n~l~   67 (78)
                      ++|++|+|++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            35777777777764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=93.02  E-value=0.028  Score=34.82  Aligned_cols=43  Identities=23%  Similarity=0.181  Sum_probs=32.9

Q ss_pred             cccCCCCCceEecccCcCCCCCc--hhhhCCCCCCEEEcccCcce
Q 036517           25 EFGDSLHLQVFYLENNKRTDSIP--ESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        25 ~~~~~~~L~~l~l~~n~~~~~~p--~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ....+++++.||++.|-+....+  +....+++|+.|.++.|++.
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~  185 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS  185 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence            46678899999999988763322  34567889999999998876

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=92.94  E-value=0.023  Score=37.55  Aligned_cols=51  Identities=22%  Similarity=0.222  Sum_probs=29.1

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCc----------------------hhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIP----------------------ESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p----------------------~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.++..  +.+..++.|..||++.|.+. .+|                      ..+.++.+|+.||+++|-+.
T Consensus       195 shNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  195 SHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLS  267 (1096)
T ss_pred             chhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhh
Confidence            55665532  25556666666666666655 333                      23445566667777776655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.69  E-value=0.1  Score=30.92  Aligned_cols=42  Identities=29%  Similarity=0.304  Sum_probs=28.8

Q ss_pred             ccCCCCCceEecccCcCCCCCchhh----hCCCCCCEEEcccCcce
Q 036517           26 FGDSLHLQVFYLENNKRTDSIPESL----GRFGCLIKLNLARNKLS   67 (78)
Q Consensus        26 ~~~~~~L~~l~l~~n~~~~~~p~~~----~~l~~L~~L~l~~n~l~   67 (78)
                      +-.+++|+.+++|.|.+....|+.+    ..-+.|.+|.+++|.+.
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            4456778888888888776666543    34457778888777654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=92.16  E-value=0.014  Score=36.03  Aligned_cols=13  Identities=38%  Similarity=0.544  Sum_probs=5.7

Q ss_pred             CCCEEEcccCcce
Q 036517           55 CLIKLNLARNKLS   67 (78)
Q Consensus        55 ~L~~L~l~~n~l~   67 (78)
                      .|+.|||++|++.
T Consensus       247 ~L~~LdLs~N~li  259 (505)
T KOG3207|consen  247 TLQELDLSNNNLI  259 (505)
T ss_pred             HHhhccccCCccc
Confidence            3444444444433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.62  E-value=0.0014  Score=37.51  Aligned_cols=45  Identities=18%  Similarity=0.139  Sum_probs=23.6

Q ss_pred             CCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517           31 HLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus        31 ~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      .+..++++.|.+. .+|+.++....+..+++..|++. ..|.+++++
T Consensus        66 ~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~  110 (326)
T KOG0473|consen   66 RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKE  110 (326)
T ss_pred             HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccccc
Confidence            3334444444444 45555555555566666666555 556555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.19  E-value=0.0098  Score=35.02  Aligned_cols=41  Identities=29%  Similarity=0.323  Sum_probs=21.2

Q ss_pred             cCCCCCceEecccCcCCCCCch--hhhCCCCCCEEEcccCccee
Q 036517           27 GDSLHLQVFYLENNKRTDSIPE--SLGRFGCLIKLNLARNKLSG   68 (78)
Q Consensus        27 ~~~~~L~~l~l~~n~~~~~~p~--~~~~l~~L~~L~l~~n~l~~   68 (78)
                      ..+++|+.|+|..|.+. .+.+  .+.++++|+.|.|..|...|
T Consensus        60 ~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   60 QRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCG  102 (388)
T ss_pred             HHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCccc
Confidence            34444444455544444 2332  24566666777666665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=89.64  E-value=0.35  Score=29.99  Aligned_cols=36  Identities=22%  Similarity=0.267  Sum_probs=19.7

Q ss_pred             hhhcc--CCceeeecCCccccCCCCCceEecccC-cCCCCCch
Q 036517            9 LTILF--RNLYLTGSVPPEFGDSLHLQVFYLENN-KRTDSIPE   48 (78)
Q Consensus         9 l~~l~--~~n~~~~~~p~~~~~~~~L~~l~l~~n-~~~~~~p~   48 (78)
                      ++.|.  ..+.++ .+|+.+  ..+|+.|++++| .+. .+|.
T Consensus        74 LtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~  112 (426)
T PRK15386         74 LTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPE  112 (426)
T ss_pred             CcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-cccc
Confidence            44444  334443 455444  257888888877 444 4554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.13  E-value=0.14  Score=30.65  Aligned_cols=38  Identities=29%  Similarity=0.305  Sum_probs=20.4

Q ss_pred             CCCCceEecccCcCCCCCch---hhhCCCCCCEEEcccCcce
Q 036517           29 SLHLQVFYLENNKRTDSIPE---SLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        29 ~~~L~~l~l~~n~~~~~~p~---~~~~l~~L~~L~l~~n~l~   67 (78)
                      .+.++.+|+.+|.++ .+.+   ...+++.|++|+++.|.+.
T Consensus        70 ~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~  110 (418)
T KOG2982|consen   70 VTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLS  110 (418)
T ss_pred             hhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCC
Confidence            344555666666655 2222   2345566666666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.40  E-value=0.5  Score=28.48  Aligned_cols=54  Identities=17%  Similarity=0.076  Sum_probs=30.3

Q ss_pred             CCceeee--cCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTG--SVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~--~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      .+|.++.  .+..-+.+++.|+.|++++|.+...+-..-..+.+|+.|-+++..+.
T Consensus        79 ~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   79 TGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             ccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence            5566552  22222457888888888888876433211123345666666655544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=88.23  E-value=0.13  Score=33.69  Aligned_cols=19  Identities=5%  Similarity=0.020  Sum_probs=14.4

Q ss_pred             cccCCCCCceEecccCcCC
Q 036517           25 EFGDSLHLQVFYLENNKRT   43 (78)
Q Consensus        25 ~~~~~~~L~~l~l~~n~~~   43 (78)
                      -..++++|..||+|+..++
T Consensus       168 lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  168 LCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             HhhccCccceeecCCCCcc
Confidence            3557888888888887765

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=87.66  E-value=0.17  Score=30.62  Aligned_cols=38  Identities=24%  Similarity=0.094  Sum_probs=19.0

Q ss_pred             CCCCceEecccCcCCCCCchh----hhCCCCCCEEEcccCcc
Q 036517           29 SLHLQVFYLENNKRTDSIPES----LGRFGCLIKLNLARNKL   66 (78)
Q Consensus        29 ~~~L~~l~l~~n~~~~~~p~~----~~~l~~L~~L~l~~n~l   66 (78)
                      .++|+.++||.|.+.-..+..    +..+..|++|.|.+|.+
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl  132 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL  132 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence            345666666666554333322    23445555555555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=86.79  E-value=0.26  Score=29.90  Aligned_cols=16  Identities=38%  Similarity=0.465  Sum_probs=7.6

Q ss_pred             CCCCCceEecccCcCC
Q 036517           28 DSLHLQVFYLENNKRT   43 (78)
Q Consensus        28 ~~~~L~~l~l~~n~~~   43 (78)
                      .+++|+.||+..|.++
T Consensus       211 ~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  211 HCPHLEVLDLRDNTFT  226 (382)
T ss_pred             hCCcceeeecccchhh
Confidence            3444445555444443

>TIGR00864 PCC polycystin cation channel protein

Probab=86.35  E-value=0.67  Score=34.90  Aligned_cols=31  Identities=13%  Similarity=-0.056  Sum_probs=21.0

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTD   44 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~   44 (78)
                      ++|.|+...+..|..+.+|+.|+|++|.+..
T Consensus         3 SnN~LstLp~g~F~~L~sL~~LdLsgNPw~C   33 (2740)
T TIGR00864         3 SNNKISTIEEGICANLCNLSEIDLSGNPFEC   33 (2740)
T ss_pred             CCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence            4677774444457777888888888887653

Note: this model has been restricted to the amino half because for technical reasons.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=81.70  E-value=0.53  Score=28.41  Aligned_cols=36  Identities=33%  Similarity=0.307  Sum_probs=15.4

Q ss_pred             cccCCCCCceEecccCcCCCCCchh---hhCCCCCCEEEcc
Q 036517           25 EFGDSLHLQVFYLENNKRTDSIPES---LGRFGCLIKLNLA   62 (78)
Q Consensus        25 ~~~~~~~L~~l~l~~n~~~~~~p~~---~~~l~~L~~L~l~   62 (78)
                      .|.+++.|+++.++.+.  +..|+.   +...++|.+||+.
T Consensus       333 ~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  333 EFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             HHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEec
Confidence            34444555555444433  123333   2333455555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.11  E-value=0.17  Score=30.09  Aligned_cols=40  Identities=28%  Similarity=0.282  Sum_probs=32.4

Q ss_pred             ccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           26 FGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        26 ~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ...|+.|+.|.|+-|+++. + ..+..|+.|+.|+|..|.|.
T Consensus        37 c~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~   76 (388)
T KOG2123|consen   37 CEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIE   76 (388)
T ss_pred             HHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccc
Confidence            4578999999999999983 3 34778888999999888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	78
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-05
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		7e-05

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           LTG +P    +  +L    L NN+ T  IP+ +GR   L  L L+ N  SG+IP   G+ 
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 78  K 78
           +
Sbjct: 535 R 535

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           LTG +P    +  +L    L NN+ T  IP+ +GR   L  L L+ N  SG+IP   G+ 
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 78  K 78
           +
Sbjct: 538 R 538

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 6   RSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCL-IKLNLARN 64
           ++ +T+ F    L+G++PP      +L     + N+ + +IP+S G F  L   + ++RN
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 65  KLSGSIPTSFGNL 77
           +L+G IP +F NL
Sbjct: 185 RLTGKIPPTFANL 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 65.2 bits (160), Expect = 1e-14
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 7   SHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
           + L  L   +  ++G++P        L       N  + ++P S+     L+ +    N+
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 66  LSGSIPTSFGNLK 78
           +SG+IP S+G+  
Sbjct: 161 ISGAIPDSYGSFS 173

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 64.5 bits (158), Expect = 2e-14
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           L G +PP       L   Y+ +   + +IP+ L +   L+ L+ + N LSG++P S  +L
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 78  K 78
            
Sbjct: 149 P 149

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 58.7 bits (143), Expect = 3e-12
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 2   IPLYRSHLTILFRNLYL-----TGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCL 56
           IP      + LF ++ +     TG +PP F  +L+L    L  N          G     
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 57  IKLNLARNKLSGSIPTSFGNLK 78
            K++LA+N L+  +    G  K
Sbjct: 224 QKIHLAKNSLAFDLG-KVGLSK 244

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.2 bits (139), Expect = 1e-11
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 12  LFRNLYLTGSVPPEFGDSLHLQVF-YLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSI 70
              N  ++G++P  +G    L     +  N+ T  IP +      L  ++L+RN L G  
Sbjct: 156 FDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA 213

Query: 71  PTSFGNLK 78
              FG+ K
Sbjct: 214 SVLFGSDK 221

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.8 bits (138), Expect = 2e-11
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 7   SHLTILFRNLYLTGSVPPEFGDSLHLQVFYLEN-NKRTDSIPESLGRFGCLIKLNLARNK 65
           ++L +   NL     +P    +  +L   Y+   N     IP ++ +   L  L +    
Sbjct: 53  NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112

Query: 66  LSGSIPTSFGNLK 78
           +SG+IP     +K
Sbjct: 113 VSGAIPDFLSQIK 125

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.4 bits (124), Expect = 1e-09
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 12  LFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71
           L +N  L   +  + G S +L    L NN+   ++P+ L +   L  LN++ N L G IP
Sbjct: 228 LAKNS-LAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 72  TSFGNLK 78
              GNL+
Sbjct: 286 QG-GNLQ 291

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 4e-13
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           LTG +P    +  +L    L NN+ T  IP+ +GR   L  L L+ N  SG+IP   G+ 
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537

Query: 78  K 78
           +
Sbjct: 538 R 538

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 5e-13
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           LTG +P   G   +L +  L NN  + +IP  LG    LI L+L  N  +G+IP +    
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 5e-13
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 12  LFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71
           L+ N+ L G +P E      L+   L+ N  T  IP  L     L  ++L+ N+L+G IP
Sbjct: 449 LWLNM-LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507

Query: 72  TSFGNLK 78
              G L+
Sbjct: 508 KWIGRLE 514

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 8e-13
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 12  LFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP 71
           L  N YL+G++P   G    L+   L  N     IP+ L     L  L L  N L+G IP
Sbjct: 425 LSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483

Query: 72  TSFGNLK 78
           +   N  
Sbjct: 484 SGLSNCT 490

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 1e-12
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 1   MIPLYRSHLTIL----FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCL 56
           +     + L+        +    G   P F ++  +    +  N  +  IP+ +G    L
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658

Query: 57  IKLNLARNKLSGSIPTSFGNLK 78
             LNL  N +SGSIP   G+L+
Sbjct: 659 FILNLGHNDISGSIPDEVGDLR 680

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 3e-12
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 1   MIPLYRSHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKL 59
           +    ++ L  L+ +N   TG +PP   +   L   +L  N  + +IP SLG    L  L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447

Query: 60  NLARNKLSGSIPTSFGNLK 78
            L  N L G IP     +K
Sbjct: 448 KLWLNMLEGEIPQELMYVK 466

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.8 bits (143), Expect = 3e-12
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 18  LTGSVPPEFGDSL--HLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG 75
            +G + P    +    LQ  YL+NN  T  IP +L     L+ L+L+ N LSG+IP+S G
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439

Query: 76  NLK 78
           +L 
Sbjct: 440 SLS 442

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.5 bits (137), Expect = 2e-11
 Identities = 11/72 (15%), Positives = 22/72 (30%)

Query: 7   SHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKL 66
                    L   G    +           + +         +    G ++ L+++ N L
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 67  SGSIPTSFGNLK 78
           SG IP   G++ 
Sbjct: 645 SGYIPKEIGSMP 656

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 3e-11
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           L+G +P E G   +L +  L +N  + SIP+ +G    L  L+L+ NKL G IP +   L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.3 bits (134), Expect = 5e-11
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 17  YLTGSVPPEFGDSLHLQVFYLENNKRTDSIP-ESLGRFGCLIKLNLARNKLSGSIPTSFG 75
           +  G+VPP FG    L+   L +N  +  +P ++L +   L  L+L+ N+ SG +P S  
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364

Query: 76  NLK 78
           NL 
Sbjct: 365 NLS 367

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 9e-10
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 18  LTGSVPPEFGDSL-HLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT-SFG 75
            TG +P     +   L    L  N    ++P   G    L  L L+ N  SG +P  +  
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 76  NLK 78
            ++
Sbjct: 341 KMR 343

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 3e-09
 Identities = 11/79 (13%), Positives = 19/79 (24%), Gaps = 2/79 (2%)

Query: 2   IPLYRSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKR--TDSIPESLGRFGCLIKL 59
           IP      +      ++ G       +    +  +   N         E L R       
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613

Query: 60  NLARNKLSGSIPTSFGNLK 78
           N+      G    +F N  
Sbjct: 614 NITSRVYGGHTSPTFDNNG 632

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 6e-09
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 7   SHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
            +L  L   +   +  +P   GD   LQ   +  NK +     ++     L  LN++ N+
Sbjct: 200 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258

Query: 66  LSGSIPTS 73
             G IP  
Sbjct: 259 FVGPIPPL 266

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 1e-08
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 18  LTGSVPPEFGDSL-HLQVFYLENNKRTDSIPESLGRF-GCLIKLNLARNKLSGSIPTSFG 75
            +G +P +    +  L+V  L  N+ +  +PESL      L+ L+L+ N  SG I  +  
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389

Query: 76  NL 77
             
Sbjct: 390 QN 391

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 4e-08
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS 73
           ++GS+P E GD   L +  L +NK    IP+++     L +++L+ N LSG IP  
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 4e-07
 Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 7/77 (9%)

Query: 7   SHLTIL-FRNLYLTGSVPPEFGDSL-HLQVFYLENNKRTDSIPESLGRFGCLIKL---NL 61
           S L  L   +  L        G  L  L+V  L  N  + +            +L    +
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185

Query: 62  ARNKLSGSIPTSFGNLK 78
           + NK+SG +        
Sbjct: 186 SGNKISGDVD--VSRCV 200

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 7   SHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
            +L IL   N   +G++P E GD   L    L  N    +IP ++ +        +A N 
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAANF 569

Query: 66  LSGSIPTSFGNLK 78
           ++G       N  
Sbjct: 570 IAGKRYVYIKNDG 582

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 20  GSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT--SFGNL 77
            +V         L+  +L N+    S+         L  L+L+RN LSG + T  S G+ 
Sbjct: 67  SAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125

Query: 78  K 78
            
Sbjct: 126 S 126

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 38.4 bits (90), Expect = 5e-05
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 7   SHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPE--SLGRFGCLIKLNLAR 63
           + L  L   N ++ GSV   F  S  L    L  N  +  +    SLG    L  LN++ 
Sbjct: 77  TGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS 135

Query: 64  NKLSGSIPTSFG 75
           N L      S G
Sbjct: 136 NTLDFPGKVSGG 147

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 2e-08
 Identities = 10/86 (11%), Positives = 19/86 (22%), Gaps = 9/86 (10%)

Query: 2   IPLYRSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNL 61
             +                +    + +   L    L N      +P+ L     L  LN+
Sbjct: 463 DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522

Query: 62  ARNKLSG---------SIPTSFGNLK 78
           A N+             +        
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGP 548

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 6e-06
 Identities = 11/83 (13%), Positives = 20/83 (24%), Gaps = 11/83 (13%)

Query: 7   SHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTD---------SIPESLGRFGCL 56
             LT +   N      +P    D   LQ   +  N+             + +       +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 57  IKLNLARNKLSG-SIPTSFGNLK 78
               +  N L       S   + 
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMV 573

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 7e-06
 Identities = 11/94 (11%), Positives = 22/94 (23%), Gaps = 20/94 (21%)

Query: 4   LYRSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNK-------------------RTD 44
           +      I      +T  +         LQ+ Y  N+                    + +
Sbjct: 423 ISLKDTQIGNLTNRIT-FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481

Query: 45  SIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK 78
           +   S      L  + L        +P    +L 
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 1/72 (1%)

Query: 7   SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
             +T L        G VP   G    L+V     +  T S                 +++
Sbjct: 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 66  LSGSIPTSFGNL 77
           +       F + 
Sbjct: 383 IRMHYKKMFLDY 394

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 6/64 (9%)

Query: 21  SVPPEFGDSLHLQVFYLE------NNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74
           S P +  +S  L+ F +        N+     P  +     LI+L +  N +        
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT 826

Query: 75  GNLK 78
             L 
Sbjct: 827 PQLY 830

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 35.2 bits (81), Expect = 8e-04
 Identities = 6/53 (11%), Positives = 18/53 (33%)

Query: 25  EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           +  ++  +    L        +P+++G+   L  L+   +  + S        
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEE 370

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 35.2 bits (81), Expect = 8e-04
 Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 4   LYRSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNK-RTDSIPESLGRFGCLIKLNLA 62
           +  +      +       +  +      +Q+FY+  N         SL +   L  L+  
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

Query: 63  RNKLSGSIPTSFGNLK 78
            NK+   +  +FG   
Sbjct: 582 HNKVR-HLE-AFGTNV 595

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 1e-07
 Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 1/62 (1%)

Query: 18  LTGSVPPE-FGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76
              +  P+ F +  +L    L   +     P +      L  LN++ N         +  
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 77  LK 78
           L 
Sbjct: 517 LN 518

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 8e-07
 Identities = 13/73 (17%), Positives = 19/73 (26%), Gaps = 1/73 (1%)

Query: 7   SHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
             L +L      +       +    HL    L  N        +      L KL      
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 66  LSGSIPTSFGNLK 78
           L+       G+LK
Sbjct: 112 LASLENFPIGHLK 124

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 2/74 (2%)

Query: 7   SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTD-SIPESLGRFGCLIKLNLARN 64
           S L  L      L        G    L+   + +N      +PE       L  L+L+ N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 65  KLSGSIPTSFGNLK 78
           K+     T    L 
Sbjct: 160 KIQSIYCTDLRVLH 173

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 3e-06
 Identities = 12/62 (19%), Positives = 16/62 (25%)

Query: 17  YLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76
            L       F     LQV  L   +       +      L  L L  N +      +F  
Sbjct: 39  PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 77  LK 78
           L 
Sbjct: 99  LS 100

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 8e-06
 Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKL-SGSIPTSFGN 76
           +       F     LQ                +G    L +LN+A N + S  +P  F N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 77  LK 78
           L 
Sbjct: 148 LT 149

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 11/60 (18%), Positives = 17/60 (28%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           L    P  F     LQV  + +N               L  L+ + N +  S      + 
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.5 bits (90), Expect = 5e-05
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 12  LFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCL----IKLNLARNKLS 67
           +  NL  +  +P  F +  +L+   L +NK        L     +    + L+L+ N ++
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 68  GSIPTSFGNLK 78
              P +F  ++
Sbjct: 191 FIQPGAFKEIR 201

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 2/65 (3%)

Query: 15  NLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS- 73
            L   G        +  L+   L  N    ++  +      L  L+   + L      S 
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 74  FGNLK 78
           F +L+
Sbjct: 417 FLSLR 421

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 4e-07
 Identities = 6/70 (8%), Positives = 19/70 (27%), Gaps = 1/70 (1%)

Query: 9   LTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG 68
           +     +     S+      +L        +N  T  + +++ R   L +  +  +    
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVA 220

Query: 69  SIPTSFGNLK 78
                    +
Sbjct: 221 ENICEAWENE 230

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 8e-07
 Identities = 7/78 (8%), Positives = 18/78 (23%), Gaps = 8/78 (10%)

Query: 9   LTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKL-- 66
                       +   ++ +   L    + N      +P  L     +  +N+A N+   
Sbjct: 228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

Query: 67  ------SGSIPTSFGNLK 78
                            +
Sbjct: 288 GEQLKDDWQALADAPVGE 305

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 16  LYLTGSVPPEFGDSLHLQVFYLENNK-RTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74
           L        +      +Q+ Y+  N  +T  +  SL +   L  L    N+L G +P +F
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349

Query: 75  GNLK 78
           G+  
Sbjct: 350 GSEI 353

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 8/73 (10%), Positives = 19/73 (26%), Gaps = 6/73 (8%)

Query: 7   SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
           + L   +  N         E  ++ +      E  ++  +          L  + +    
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 66  LSGSIPTSFGNLK 78
               +PT    L 
Sbjct: 261 NLTKLPTFLKALP 273

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 5e-06
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 7/66 (10%)

Query: 20  GSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG-------SIPT 72
             + P     +++    L NN+ +    E       L  +NL  N L+            
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482

Query: 73  SFGNLK 78
           +F N  
Sbjct: 483 NFKNTY 488

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 8e-06
 Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 5/78 (6%)

Query: 6   RSHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRT----DSIPESLGRFGCLIKLN 60
              +T L       +G VP   G    L+V  L ++          P+ +       +  
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 61  LARNKLSGSIPTSFGNLK 78
             R     +         
Sbjct: 140 KMRMHYQKTFVDYDPRED 157

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.1 bits (89), Expect = 7e-05
 Identities = 7/74 (9%), Positives = 16/74 (21%), Gaps = 4/74 (5%)

Query: 4   LYRSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLAR 63
               +      N       P        L    + +N     + E +     +  L++  
Sbjct: 541 FGIRNQRDAQGN-RTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKD 596

Query: 64  NKLSGSIPTSFGNL 77
           N       +     
Sbjct: 597 NPNISIDLSYVCPY 610

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 21  SVPPEFGDSLHLQVFYLEN------NKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF 74
             P +  +S  L+ F + N      N+     PE +     L +L +  N +        
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT 586

Query: 75  GNLK 78
            N+ 
Sbjct: 587 PNIS 590

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 35.8 bits (83), Expect = 4e-04
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 21  SVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG 75
              P FG  + L    L  N+ T+      G    +  L+ A NKL   IP  F 
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFD 397

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 35.4 bits (82), Expect = 6e-04
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 21  SVPPEFGDSL-HLQVFYLENNKRTDSIPESLGRFGC--LIKLNLARNKLSGSIPTSFGNL 77
            +P  F      ++     +NK    IP          +  ++ + N++      +F  L
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.4 bits (103), Expect = 9e-07
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 14  RNLYLTG-----SVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG 68
             L L G     + PP FG    L+   L++     ++P  + R   L KL+L       
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 69  SIPTSFGNLK 78
            +P+    L 
Sbjct: 292 RLPSLIAQLP 301

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.1 bits (97), Expect = 5e-06
 Identities = 9/74 (12%), Positives = 18/74 (24%), Gaps = 4/74 (5%)

Query: 7   SHLTILFRNLYLTGSVPPEFGD--SLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARN 64
           ++  I  R      +      D          L +       P+   R   L  + +   
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114

Query: 65  KLSGSIPTSFGNLK 78
            L   +P +     
Sbjct: 115 GLM-ELPDTMQQFA 127

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.1 bits (97), Expect = 5e-06
 Identities = 10/58 (17%), Positives = 17/58 (29%)

Query: 21  SVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK 78
           ++ P       L+   L       + P   G    L +L L       ++P     L 
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 21  SVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK 78
            +P        L+   L  N    ++P S+     L +L++        +P    +  
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 21  SVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK 78
               E    ++LQ   LE      S+P S+     L  L +  + LS ++  +  +L 
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP 229

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 35.7 bits (83), Expect = 4e-04
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 10/67 (14%)

Query: 21  SVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFG---------CLIKLNLARNKLSGSIP 71
           ++P        L+   +        +PE L              L  L L    +  S+P
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP 199

Query: 72  TSFGNLK 78
            S  NL+
Sbjct: 200 ASIANLQ 206

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGC--LIKLNLARNKLSGSIPTSFG 75
           L+ +         +LQ   L NNK      E L  F    L KL L+ N++    P  F 
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 76  NLK 78
            + 
Sbjct: 193 AIG 195

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 4   LYRSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLAR 63
           L  ++L  L+++    G          HL +  LE+N   +   E       L  ++L  
Sbjct: 511 LQHNNLARLWKH-ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569

Query: 64  NKLSGSIPTSFGNLK 78
           N L+    + F N  
Sbjct: 570 NNLNTLPASVFNNQV 584

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 7  SHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
          +++T+L   +  L       F     L    +  N  +   PE   +   L  LNL  N+
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 66 LSGSIPTSFGNLK 78
          LS     +F    
Sbjct: 85 LSQLSDKTFAFCT 97

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 5e-06
 Identities = 13/61 (21%), Positives = 23/61 (37%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           L+      F    +L   +L +N           +   LI L+L+ N LS +   +   L
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 78  K 78
           +
Sbjct: 145 E 145

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 7e-06
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 7   SHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
           S LT L      ++   P        L+V  L++N+ +    ++      L +L+L  N 
Sbjct: 49  SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108

Query: 66  LSGSIPTSFGNLK 78
           +       F   K
Sbjct: 109 IQKIKNNPFVKQK 121

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIK---LNLARNKLSGSIPTSF 74
           +    P  F     L   +L N +   S+ E L           L+L+ ++LS +  T+F
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 75  GNLK 78
             LK
Sbjct: 243 LGLK 246

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 7   SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
           ++LT L   +  +       F    +L    L +N  + +   +  +   L +L L+ NK
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 66  LSGSIPTSFGNLK 78
           +            
Sbjct: 157 IQALKSEELDIFA 169

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 3/78 (3%)

Query: 4   LYRSHLTIL-FRNLYLTGSVPPEFG--DSLHLQVFYLENNKRTDSIPESLGRFGCLIKLN 60
           L  + +  L   N  L+ +    F      +L +  L  N       +S      L    
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 61  LARNKLSGSIPTSFGNLK 78
           L  N +      S   L 
Sbjct: 279 LEYNNIQHLFSHSLHGLF 296

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.8 bits (91), Expect = 4e-05
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 18  LTGSVPP-EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG--SIPTSF 74
           +   +   E+    ++   YL  NK       S      L +L L R  L    S P+ F
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476

Query: 75  GNLK 78
             L+
Sbjct: 477 QPLR 480

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 37.7 bits (88), Expect = 9e-05
 Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 1/72 (1%)

Query: 7   SHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
           SHL IL   +          F D   L++  L  N               L  LNL +N 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 66  LSGSIPTSFGNL 77
           ++      FG  
Sbjct: 596 ITSVEKKVFGPA 607

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 35.4 bits (82), Expect = 6e-04
 Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 2/63 (3%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNK--RTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG 75
                   F     LQ   L        DS P        L  L+L+ N ++        
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 76  NLK 78
            L+
Sbjct: 502 GLE 504

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 8e-06
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 2/74 (2%)

Query: 7   SHLTILF--RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARN 64
           + L  L    N +   ++   F ++ +L    L   +              L  LN++ N
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507

Query: 65  KLSGSIPTSFGNLK 78
            L     + +  L 
Sbjct: 508 NLLFLDSSHYNQLY 521

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 12/61 (19%), Positives = 15/61 (24%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           +       +    HL    L  N      P S      L  L     KL+       G L
Sbjct: 68  IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL 127

Query: 78  K 78
            
Sbjct: 128 I 128

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 35.8 bits (83), Expect = 5e-04
 Identities = 13/62 (20%), Positives = 18/62 (29%)

Query: 17  YLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76
            L       F +   LQ   L   +      ++      L  L L  N +    P SF  
Sbjct: 43  PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102

Query: 77  LK 78
           L 
Sbjct: 103 LT 104

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 8/62 (12%), Positives = 20/62 (32%)

Query: 17  YLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76
                          L++  L     +     +      +  ++L+ N+L+ S   +  +
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 77  LK 78
           LK
Sbjct: 523 LK 524

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 1/73 (1%)

Query: 7   SHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
           +    L F    L       F   ++L    L   +      ++      L  L L  N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 66  LSGSIPTSFGNLK 78
           L     T+    K
Sbjct: 93  LIFMAETALSGPK 105

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 10/61 (16%), Positives = 14/61 (22%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           +       F     L    L  N        +L     L  L   +  +S        N 
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 78  K 78
           K
Sbjct: 129 K 129

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 8/61 (13%), Positives = 13/61 (21%)

Query: 18  LTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
           L             L+  +      +      L     L  L L  N +S          
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 78  K 78
           +
Sbjct: 153 E 153

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 35.8 bits (83), Expect = 5e-04
 Identities = 8/62 (12%), Positives = 18/62 (29%)

Query: 17  YLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN 76
            ++        +   L+  YL +N  +            L  L+   N +         +
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175

Query: 77  LK 78
           L+
Sbjct: 176 LQ 177

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 35.0 bits (81), Expect = 8e-04
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 7   SHLTIL-FRNLYLTGSVPPEFGD--SLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLAR 63
             L +  F ++      P  F     + ++   L+ +   +    +   F  L +L+L  
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287

Query: 64  NKLSGSIPTSFGNLK 78
             LS  +P+    L 
Sbjct: 288 THLS-ELPSGLVGLS 301

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 7   SHLTIL-FRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
             L  L   +  L  S+P        L   +  NN+ T S+P        L +L+++ N+
Sbjct: 141 PGLQELSVSDNQLA-SLPALPS---ELCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQ 192

Query: 66  LSGSIPTSFGNLK 78
           L+ S+PT    L 
Sbjct: 193 LA-SLPTLPSELY 204

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 34.9 bits (80), Expect = 9e-04
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 2   IPLYRSHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLN 60
           +P+  S L  L      LT S+P        L    +  N+ T  +PESL        +N
Sbjct: 236 LPVLPSELKELMVSGNRLT-SLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVN 290

Query: 61  LARNKLSGSIPTSFGNL 77
           L  N LS     +   +
Sbjct: 291 LEGNPLSERTLQALREI 307

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	78
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.58
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.5
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.46
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.4
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.35
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.35
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.34
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.33
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.32
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.31
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.3
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.3
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.29
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.28
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.24
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.24
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.23
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.21
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.21
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.2
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.2
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.2
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.2
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.19
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.18
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.17
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.16
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.15
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.1
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.1
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.1
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.03
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.03
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.03
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.03
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.03
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.03
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.02
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.02
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.02
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.02
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.01
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.01
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.0
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.99
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.99
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.99
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.99
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.97
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.96
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.96
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.94
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.87
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.78
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.75
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.73
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.71
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.7
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.69
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.67
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.66
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.65
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.62
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.59
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.58
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.58
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.57
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.56
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.54
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.52
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.51
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.5
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.5
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.49
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.49
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.46
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.46
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.45
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.39
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.36
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.33
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.33
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.21
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.2
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.13
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.03
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.77
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.52
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.5
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.46
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.24
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.86
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.57
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.5
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.43
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.92
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.51
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.35
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	93.77
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	93.2
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	92.66
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	91.97
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	90.43
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	89.37
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	88.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	86.17

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.58  E-value=4.3e-15  Score=91.99  Aligned_cols=71  Identities=34%  Similarity=0.577  Sum_probs=38.0

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      +|.+++.++.|+    ++|.++|.+|..++.+++|+.|++++|.++|.+|..+..+++|++|++++|++.|.+|.
T Consensus       648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             CCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            344444444444    55555555555555555555555555555555555555555555555555555555553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.57  E-value=4.8e-15  Score=91.78  Aligned_cols=76  Identities=29%  Similarity=0.427  Sum_probs=68.5

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      +|..+..++.|+    ++|.++|.+|.+++.++.|+.|++++|.++|.+|..++.+++|+.||+++|+++|.+|..++++
T Consensus       624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l  703 (768)
T 3rgz_A          624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL  703 (768)
T ss_dssp             CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence            355565555555    9999999999999999999999999999999999999999999999999999999999988765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.50  E-value=6e-14  Score=79.46  Aligned_cols=74  Identities=24%  Similarity=0.458  Sum_probs=41.7

Q ss_pred             Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517            3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus         3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      |..+..++.|+    ++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+++
T Consensus        94 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  171 (313)
T 1ogq_A           94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS  171 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred             ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh
Confidence            44444444444    455555555555555566666666666555555555656666666666666665555555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.46  E-value=1.6e-13  Score=78.25  Aligned_cols=76  Identities=24%  Similarity=0.284  Sum_probs=57.3

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      +|+.+..++.|+    ++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++++
T Consensus       221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L  300 (328)
T 4fcg_A          221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL  300 (328)
T ss_dssp             CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred             CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence            455555555555    6677777777777888888888888877777788778888888888888888777888777765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.46  E-value=2.2e-13  Score=72.61  Aligned_cols=72  Identities=31%  Similarity=0.354  Sum_probs=52.4

Q ss_pred             cchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            6 RSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         6 ~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      +..++.|+    ++|.+++..|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  125 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL  125 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC
T ss_pred             cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcC
Confidence            44555554    7777777767777788888888888888876666667778888888888888876667666544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.44  E-value=1.3e-13  Score=78.08  Aligned_cols=76  Identities=29%  Similarity=0.531  Sum_probs=64.8

Q ss_pred             CCcccchhhhcc----C-CceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517            2 IPLYRSHLTILF----R-NLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus         2 ~p~~~~~l~~l~----~-~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      +|..+..++.|+    + .|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+++
T Consensus        68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  147 (313)
T 1ogq_A           68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence            566777777776    5 48888889999999999999999999998888999999999999999999999888877765


Q ss_pred             C
Q 036517           77 L   77 (78)
Q Consensus        77 l   77 (78)
                      +
T Consensus       148 l  148 (313)
T 1ogq_A          148 L  148 (313)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.41  E-value=1.2e-12  Score=69.95  Aligned_cols=70  Identities=21%  Similarity=0.254  Sum_probs=49.4

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      +|..+..++.|+    ++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|.
T Consensus        46 ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~  119 (193)
T 2wfh_A           46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPE  119 (193)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCT
T ss_pred             hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeCh
Confidence            455555555555    777777666666777788888888888777666667777788888888888877 5554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.41  E-value=8.8e-13  Score=69.23  Aligned_cols=75  Identities=28%  Similarity=0.372  Sum_probs=54.2

Q ss_pred             CCccc-chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC-CCcCC
Q 036517            2 IPLYR-SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT-SFGNL   77 (78)
Q Consensus         2 ~p~~~-~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l   77 (78)
                      +|..+ ..++.|. ++|.+++..|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|. .+..+
T Consensus        24 ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l  101 (170)
T 3g39_A           24 VPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNL  101 (170)
T ss_dssp             CCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             cCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC-EeCHHHhcCC
Confidence            45444 2344455 888888777777888888888888888888555566788888888888888888 4544 45543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=1.2e-12  Score=69.03  Aligned_cols=75  Identities=31%  Similarity=0.424  Sum_probs=55.4

Q ss_pred             CCccc-chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCC-CcCC
Q 036517            2 IPLYR-SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS-FGNL   77 (78)
Q Consensus         2 ~p~~~-~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l   77 (78)
                      +|..+ ..++.|. ++|.+++..|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|.. +.++
T Consensus        27 iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l  104 (174)
T 2r9u_A           27 VPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNL  104 (174)
T ss_dssp             CCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             cCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc-eeCHHHhccc
Confidence            45444 2344555 888888777778888999999999999988544455788889999999999888 55553 5543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.40  E-value=7.9e-13  Score=75.47  Aligned_cols=71  Identities=17%  Similarity=0.044  Sum_probs=60.1

Q ss_pred             CCcccchhhhcc----CC-ceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517            2 IPLYRSHLTILF----RN-LYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF   74 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~-n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~   74 (78)
                      +|. +..++.|+    ++ |.+++..+..|..+++|+.|++++|.+.+..|..|..+++|+.|+|++|.+. .+|..+
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~   99 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKT   99 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTT
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHH
Confidence            566 66655555    75 9999877788999999999999999999888889999999999999999999 666543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.36  E-value=2.2e-12  Score=70.03  Aligned_cols=61  Identities=18%  Similarity=0.168  Sum_probs=30.3

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF   74 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~   74 (78)
                      ++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..|..+
T Consensus        65 ~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  125 (220)
T 2v70_A           65 SNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF  125 (220)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS
T ss_pred             CCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHc
Confidence            4555554444445555555555555555554444445555555555555555553333333

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.35  E-value=2.8e-12  Score=73.10  Aligned_cols=75  Identities=21%  Similarity=0.211  Sum_probs=45.1

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      +|..+..++.|+    ++|.++ .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++++
T Consensus       198 lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l  276 (328)
T 4fcg_A          198 LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL  276 (328)
T ss_dssp             CCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred             chHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC
Confidence            444455554444    556666 345556666666666666666666666666666666666666666666666555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.35  E-value=2.3e-12  Score=79.88  Aligned_cols=73  Identities=30%  Similarity=0.392  Sum_probs=56.2

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      +|..+..++.|+    ++|.++ .+|..+..+++|+.|++++|.+. .+|..|+.+++|++|+|++|.+. .+|..|+++
T Consensus       239 l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l  315 (727)
T 4b8c_D          239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNL  315 (727)
T ss_dssp             CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSC
T ss_pred             CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcC
Confidence            455555555555    778887 77878888888888888888888 77888888888888888888887 788777665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.34  E-value=3.7e-12  Score=76.64  Aligned_cols=75  Identities=19%  Similarity=0.141  Sum_probs=62.3

Q ss_pred             Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      |..+..++.|+    ++|.+++..|..|..+++|+.|++++|++.+..|..|..+++|++|++++|.+++..|..+..+
T Consensus       487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  565 (635)
T 4g8a_A          487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  565 (635)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred             chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence            44455555555    8899998888899999999999999999997777889999999999999999997777766543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.33  E-value=9.9e-12  Score=67.48  Aligned_cols=73  Identities=18%  Similarity=0.120  Sum_probs=58.9

Q ss_pred             ccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            5 YRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         5 ~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      .+..++.|+    ++|.+++..+..+..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+++..|..+..+
T Consensus        76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  152 (220)
T 2v70_A           76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL  152 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTC
T ss_pred             HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCC
Confidence            455556565    8888887666678889999999999999997778888899999999999999986657766654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.32  E-value=6.7e-12  Score=67.05  Aligned_cols=75  Identities=28%  Similarity=0.376  Sum_probs=60.6

Q ss_pred             CCccc-chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            2 IPLYR-SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         2 ~p~~~-~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      +|..+ ..++.|. ++|.++ .+|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+
T Consensus        25 ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l  101 (193)
T 2wfh_A           25 LPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL  101 (193)
T ss_dssp             CCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred             CCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCC
Confidence            45444 3455566 889988 788889999999999999999997777889999999999999999995555556544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.31  E-value=8e-12  Score=66.59  Aligned_cols=76  Identities=26%  Similarity=0.257  Sum_probs=61.0

Q ss_pred             CCcccc-hhhhcc-CCceeeecCCc-cccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            2 IPLYRS-HLTILF-RNLYLTGSVPP-EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         2 ~p~~~~-~l~~l~-~~n~~~~~~p~-~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      +|..+. .++.|. ++|.+++..+. .+..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..|..+..+
T Consensus        23 ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  101 (192)
T 1w8a_A           23 IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL  101 (192)
T ss_dssp             CCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTC
T ss_pred             CccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCC
Confidence            455443 455555 88999866554 48899999999999999998889999999999999999999996666556554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.31  E-value=1e-11  Score=67.39  Aligned_cols=54  Identities=24%  Similarity=0.185  Sum_probs=26.7

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..|..|..+++|+.|++++|.+....+..|..+++|++|++++|.+.
T Consensus        64 s~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           64 SNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             CSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence            455555444555555555555555555555222233444455555555555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.31  E-value=4e-12  Score=77.66  Aligned_cols=60  Identities=20%  Similarity=0.184  Sum_probs=33.4

Q ss_pred             eeeecCCccccCCCCCceEecccCcCCCC-----------------Cchhhh--CCCCCCEEEcccCcceeccCCCCcCC
Q 036517           17 YLTGSVPPEFGDSLHLQVFYLENNKRTDS-----------------IPESLG--RFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus        17 ~~~~~~p~~~~~~~~L~~l~l~~n~~~~~-----------------~p~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      .+++ +|.+++.+++|+.|++++|.+.+.                 +|..++  .+++|++|++++|.+.+.+|..++++
T Consensus       194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  272 (636)
T 4eco_A          194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL  272 (636)
T ss_dssp             EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred             CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence            4454 555555555555555555555543                 555555  55555555555555555555555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.30  E-value=4.6e-13  Score=81.73  Aligned_cols=73  Identities=18%  Similarity=0.180  Sum_probs=53.8

Q ss_pred             CCcccchhhhcc----CCceeeec-----------------CCcccc--CCCCCceEecccCcCCCCCchhhhCCCCCCE
Q 036517            2 IPLYRSHLTILF----RNLYLTGS-----------------VPPEFG--DSLHLQVFYLENNKRTDSIPESLGRFGCLIK   58 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~-----------------~p~~~~--~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~   58 (78)
                      +|..+++++.|+    ++|.+++.                 +|+.++  .+++|++|++++|.+.+.+|..++.+++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            466666666666    67777764                 777777  7888888888888777777877777888888


Q ss_pred             EEcccCc-cee-ccCCCC
Q 036517           59 LNLARNK-LSG-SIPTSF   74 (78)
Q Consensus        59 L~l~~n~-l~~-~~p~~~   74 (78)
                      |++++|. +++ .+|..+
T Consensus       278 L~Ls~n~~l~~~~lp~~~  295 (636)
T 4eco_A          278 INVACNRGISGEQLKDDW  295 (636)
T ss_dssp             EECTTCTTSCHHHHHHHH
T ss_pred             EECcCCCCCccccchHHH
Confidence            8888877 776 566544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.30  E-value=3.4e-12  Score=76.84  Aligned_cols=59  Identities=19%  Similarity=-0.013  Sum_probs=29.3

Q ss_pred             hhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517            9 LTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus         9 l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++.|. ++|.+++..+.+|..+++|++|++++|.+++..+..|.++++|++|++++|+++
T Consensus        54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~  113 (635)
T 4g8a_A           54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ  113 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence            33444 555555444444555555555555555555333344555555555555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.29  E-value=1.4e-11  Score=66.89  Aligned_cols=75  Identities=24%  Similarity=0.154  Sum_probs=57.6

Q ss_pred             Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      |..+..++.|+    ++|.++...+..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+++..+..+..+
T Consensus        73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  151 (220)
T 2v9t_B           73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL  151 (220)
T ss_dssp             TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC
Confidence            44566666665    8899985544457889999999999999997778889999999999999999984444445443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.28  E-value=1.4e-11  Score=67.13  Aligned_cols=41  Identities=27%  Similarity=0.229  Sum_probs=16.1

Q ss_pred             cCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           27 GDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        27 ~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.
T Consensus        85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~  125 (229)
T 3e6j_A           85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT  125 (229)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc
Confidence            34444444444444444222223333344444444444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.24  E-value=2.6e-11  Score=73.62  Aligned_cols=52  Identities=29%  Similarity=0.253  Sum_probs=23.9

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCC-chhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSI-PESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++ +| .+..+++|+.|++++|.+.+.. |..++.+++|+.|++++|.+.
T Consensus       494 s~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          494 SDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             CSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            4444442 33 3444444444444444444332 444444444555555544444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.24  E-value=3e-11  Score=70.80  Aligned_cols=62  Identities=18%  Similarity=0.049  Sum_probs=33.9

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCc
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG   75 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~   75 (78)
                      ++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+.
T Consensus       307 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  368 (455)
T 3v47_A          307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL  368 (455)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc
Confidence            55555555555555555555665555555544455555555555555555555544444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.24  E-value=2.5e-11  Score=63.17  Aligned_cols=64  Identities=22%  Similarity=0.184  Sum_probs=41.3

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      +|..+..++.|+    ++|.+++.  ..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.++
T Consensus        41 i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  108 (168)
T 2ell_A           41 IEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK  108 (168)
T ss_dssp             CSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCC
T ss_pred             HHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccC
Confidence            344444455554    66666643  55666777777777777777556666666777777777777766

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.24  E-value=3.4e-12  Score=79.16  Aligned_cols=72  Identities=28%  Similarity=0.391  Sum_probs=63.9

Q ss_pred             CCCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517            1 MIPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF   74 (78)
Q Consensus         1 ~~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~   74 (78)
                      .+|..+..++.|+    ++|.++ .+|..++.+++|+.|++++|.+. .+|..|+.+++|++|++++|.+.+.+|..+
T Consensus       261 ~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            3688888888777    899999 78999999999999999999998 889889999999999999999997776544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.23  E-value=2.1e-12  Score=81.49  Aligned_cols=74  Identities=24%  Similarity=0.189  Sum_probs=56.9

Q ss_pred             CCcccchhhhcc----CCceeee-----------------cCCcccc--CCCCCceEecccCcCCCCCchhhhCCCCCCE
Q 036517            2 IPLYRSHLTILF----RNLYLTG-----------------SVPPEFG--DSLHLQVFYLENNKRTDSIPESLGRFGCLIK   58 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~-----------------~~p~~~~--~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~   58 (78)
                      +|..+++++.|+    ++|.+++                 .+|+.++  .+++|+.|++++|.+.+.+|..++.+++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            577777777776    7778886                 3788776  8888888888888888788888888888888


Q ss_pred             EEcccCc-cee-ccCCCCc
Q 036517           59 LNLARNK-LSG-SIPTSFG   75 (78)
Q Consensus        59 L~l~~n~-l~~-~~p~~~~   75 (78)
                      |++++|. +++ .+|..++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~  538 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWT  538 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHH
T ss_pred             EECcCCCCcccccchHHHH
Confidence            8888887 776 5665443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.22  E-value=4.3e-11  Score=65.27  Aligned_cols=74  Identities=23%  Similarity=0.367  Sum_probs=58.4

Q ss_pred             CCccc-chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC-CCcC
Q 036517            2 IPLYR-SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT-SFGN   76 (78)
Q Consensus         2 ~p~~~-~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~   76 (78)
                      +|..+ .+++.|. ++|.+++..|..+..+++|+.|++++|.+....+..|..+++|++|++++|.++ .+|. .+..
T Consensus        34 ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~  110 (229)
T 3e6j_A           34 VPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDR  110 (229)
T ss_dssp             CCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             cCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCc
Confidence            45444 3455555 899999888888999999999999999998554566899999999999999999 5554 3443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.22  E-value=5.8e-11  Score=66.74  Aligned_cols=74  Identities=19%  Similarity=0.134  Sum_probs=51.2

Q ss_pred             Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517            3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus         3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      |..+..++.|+    ++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  245 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH  245 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred             hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence            44444444454    677777666777777778888888888777555556777778888888888877666655554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.21  E-value=1.8e-11  Score=73.87  Aligned_cols=73  Identities=14%  Similarity=0.027  Sum_probs=48.2

Q ss_pred             Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517            3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus         3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      |..+..++.|+    ++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++ .+|..+..
T Consensus       466 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~  542 (606)
T 3vq2_A          466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQH  542 (606)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGG
T ss_pred             HHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhh
Confidence            34444444444    666777666666777777777777777777666677777777777777777776 66655443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.21  E-value=3.2e-11  Score=73.18  Aligned_cols=72  Identities=18%  Similarity=0.235  Sum_probs=61.9

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceecc-CCCCcC
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSI-PTSFGN   76 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~   76 (78)
                      +|. +..++.|+    ++|.++ .+|..++.+++|+.|++++|.+++ +| .++.+++|+.|++++|.+++.. |..++.
T Consensus       456 lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~  531 (567)
T 1dce_A          456 LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS  531 (567)
T ss_dssp             CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred             CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence            454 66666666    899999 889999999999999999999995 77 8999999999999999999554 887776


Q ss_pred             C
Q 036517           77 L   77 (78)
Q Consensus        77 l   77 (78)
                      +
T Consensus       532 l  532 (567)
T 1dce_A          532 C  532 (567)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.20  E-value=7.7e-11  Score=61.84  Aligned_cols=58  Identities=22%  Similarity=0.299  Sum_probs=34.9

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      ++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|.
T Consensus        60 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~  117 (177)
T 2o6r_A           60 SQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPD  117 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCT
T ss_pred             CCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCH
Confidence            566666444444566666666666666666444444566666666666666666 4443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.20  E-value=2e-11  Score=62.46  Aligned_cols=52  Identities=23%  Similarity=0.248  Sum_probs=32.8

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++.  ..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.
T Consensus        50 ~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~  101 (149)
T 2je0_A           50 INVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK  101 (149)
T ss_dssp             TTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCC
T ss_pred             cCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCC
Confidence            55666543  45666666666666666666556666666666666666666665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.20  E-value=3.3e-11  Score=72.76  Aligned_cols=63  Identities=16%  Similarity=0.015  Sum_probs=37.1

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      ++|.+++..|..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|..+++
T Consensus        41 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  103 (606)
T 3t6q_A           41 SFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG  103 (606)
T ss_dssp             TTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred             cCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence            556666555555666666666666666665555555666666666666666665444544443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.20  E-value=5.6e-11  Score=62.32  Aligned_cols=67  Identities=21%  Similarity=0.136  Sum_probs=55.4

Q ss_pred             Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceec
Q 036517            3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGS   69 (78)
Q Consensus         3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~   69 (78)
                      |..+..++.|+    ++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+...
T Consensus        47 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            44566666666    89999976666688999999999999999965566799999999999999988744

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.19  E-value=8.3e-11  Score=61.71  Aligned_cols=69  Identities=20%  Similarity=0.108  Sum_probs=54.6

Q ss_pred             hhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517            8 HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus         8 ~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      .++.|. ++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~   98 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK   98 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhC
Confidence            455555 888998666666889999999999999999665666899999999999999999444434444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.18  E-value=9.7e-11  Score=64.44  Aligned_cols=54  Identities=24%  Similarity=0.146  Sum_probs=22.0

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus        67 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  120 (251)
T 3m19_A           67 DYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK  120 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC
Confidence            344444333333444444444444444444322233334444444444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.18  E-value=1e-10  Score=64.35  Aligned_cols=54  Identities=19%  Similarity=0.191  Sum_probs=25.9

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            444444333333444555555555555555333334555555555555555555

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.18  E-value=9.3e-11  Score=70.07  Aligned_cols=73  Identities=18%  Similarity=0.100  Sum_probs=49.0

Q ss_pred             cccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCccee-ccCCCCcC
Q 036517            4 LYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG-SIPTSFGN   76 (78)
Q Consensus         4 ~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~   76 (78)
                      ..+..++.|+    ++|.+++..|..+..+++|+.|++++|.+.+..|..|+.+++|++|++++|.+.+ .+|..+++
T Consensus        44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  121 (549)
T 2z81_A           44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN  121 (549)
T ss_dssp             STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT
T ss_pred             hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhc
Confidence            3444555554    6777776666677777777777777777776555667777778888888777763 23444444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.17  E-value=1.3e-10  Score=65.33  Aligned_cols=54  Identities=30%  Similarity=0.191  Sum_probs=27.1

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.++
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            455555433344555555555555555555333333444555555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.16  E-value=1.1e-10  Score=61.53  Aligned_cols=65  Identities=20%  Similarity=0.156  Sum_probs=53.4

Q ss_pred             Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517            3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus         3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      |..+..++.|+    ++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus        50 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            44566666666    899999655555789999999999999999554556999999999999999988

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.16  E-value=1.2e-10  Score=70.37  Aligned_cols=54  Identities=19%  Similarity=0.153  Sum_probs=26.6

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..|..|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+.
T Consensus        64 s~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  117 (606)
T 3vq2_A           64 SRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA  117 (606)
T ss_dssp             TTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC
T ss_pred             CCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc
Confidence            444444444444555555555555555554444444555555555555544444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.16  E-value=1.6e-10  Score=64.25  Aligned_cols=54  Identities=19%  Similarity=0.132  Sum_probs=24.5

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            444444333333444444444444444444333333444455555555555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.15  E-value=1.9e-10  Score=61.61  Aligned_cols=41  Identities=20%  Similarity=0.203  Sum_probs=16.3

Q ss_pred             cCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           27 GDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        27 ~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  113 (208)
T 2o6s_A           73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ  113 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc
Confidence            34444444444444444222222334444444444444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.14  E-value=2.1e-10  Score=61.50  Aligned_cols=65  Identities=23%  Similarity=0.237  Sum_probs=47.6

Q ss_pred             chhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517            7 SHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus         7 ~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      ..++.|+    ++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|.
T Consensus        73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~  141 (208)
T 2o6s_A           73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPD  141 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCT
T ss_pred             CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCH
Confidence            4445554    778888555555778888888888888888555556788888888888888888 4444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.14  E-value=1.1e-10  Score=68.44  Aligned_cols=54  Identities=22%  Similarity=0.161  Sum_probs=34.7

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.++
T Consensus       331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK  384 (455)
T ss_dssp             CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence            566666555556666666666666666666555666666666666666666666

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.14  E-value=1.2e-10  Score=64.65  Aligned_cols=66  Identities=18%  Similarity=-0.000  Sum_probs=35.0

Q ss_pred             hhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517            9 LTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF   74 (78)
Q Consensus         9 l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~   74 (78)
                      ++.|. ++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   96 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF   96 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred             ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence            34444 5555554444455556666666666665554444455555566666666665553333333

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.13  E-value=2.3e-10  Score=64.36  Aligned_cols=73  Identities=25%  Similarity=0.144  Sum_probs=59.1

Q ss_pred             cccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            4 LYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         4 ~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      ..+..++.|+    ++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.++ .+|..+..+
T Consensus       118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~  194 (290)
T 1p9a_G          118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS  194 (290)
T ss_dssp             STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhccc
Confidence            3455666665    889999766666889999999999999999554556788999999999999999 888876653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.13  E-value=2.5e-10  Score=63.46  Aligned_cols=54  Identities=19%  Similarity=0.178  Sum_probs=30.7

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  170 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ  170 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence            555555444444555666666666666665444444555666666666666665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.12  E-value=4.3e-11  Score=71.50  Aligned_cols=76  Identities=24%  Similarity=0.228  Sum_probs=61.7

Q ss_pred             CCccc-chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            2 IPLYR-SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         2 ~p~~~-~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      +|..+ ..++.|. ++|.+++..|..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|..++++
T Consensus        20 ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   97 (549)
T 2z81_A           20 IPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL   97 (549)
T ss_dssp             CCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred             ccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence            56544 3455566 8999998888889999999999999999997777889999999999999999995444335544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.11  E-value=2.1e-10  Score=66.07  Aligned_cols=54  Identities=17%  Similarity=0.026  Sum_probs=24.9

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..+..|..+++|+.|++++|.+....+..|..+++|+.|++++|.+.
T Consensus        72 ~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~  125 (361)
T 2xot_A           72 SHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV  125 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc
Confidence            444444443344444455555555555444333333444444444444444444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.11  E-value=2.5e-10  Score=63.67  Aligned_cols=54  Identities=26%  Similarity=0.289  Sum_probs=23.3

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  166 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS  166 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc
Confidence            444444333344444444444444444444322233444444444444444444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.11  E-value=2.9e-10  Score=67.14  Aligned_cols=61  Identities=18%  Similarity=0.228  Sum_probs=30.2

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF   74 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~   74 (78)
                      ++|.+++..|..+..+++|+.|++++|.+....+..|..+++|++|++++|.+.+..|..+
T Consensus        64 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~  124 (477)
T 2id5_A           64 NENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF  124 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             CCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHc
Confidence            4455554445555555555555555555553222334555555555555555553333333

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.10  E-value=2.1e-10  Score=67.60  Aligned_cols=54  Identities=17%  Similarity=0.035  Sum_probs=25.4

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+.
T Consensus       107 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  160 (452)
T 3zyi_A          107 GRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE  160 (452)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred             CCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence            444444444444444445555555555444333333444555555555555544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.10  E-value=1.9e-10  Score=69.48  Aligned_cols=72  Identities=15%  Similarity=-0.010  Sum_probs=48.2

Q ss_pred             cccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCc
Q 036517            4 LYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG   75 (78)
Q Consensus         4 ~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~   75 (78)
                      ..+..++.|+    ++|.+++..|..|..+++|+.|++++|.+.+..|..|+.+++|++|++++|.+.+..|..++
T Consensus        51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~  126 (606)
T 3t6q_A           51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH  126 (606)
T ss_dssp             TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred             hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhc
Confidence            3455555555    67777766677777777777777777777766666777777777777777777633234343

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.10  E-value=3.2e-10  Score=68.84  Aligned_cols=62  Identities=19%  Similarity=0.121  Sum_probs=28.3

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCc
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG   75 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~   75 (78)
                      ++|.+++..|..++.+++|+.|++++|.+.+..+..|+.+++|++|++++|.+.+..|..++
T Consensus       107 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  168 (597)
T 3oja_B          107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ  168 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred             CCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh
Confidence            44444444344444455555555555555422222334555555555555555533333333

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.09  E-value=1.7e-10  Score=61.53  Aligned_cols=52  Identities=15%  Similarity=0.205  Sum_probs=31.6

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCc
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK   65 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~   65 (78)
                      ++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus        96 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A           96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             ECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             ECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            5556655455556666666666666666665555556666666666666665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.08  E-value=5.2e-10  Score=62.35  Aligned_cols=62  Identities=19%  Similarity=0.265  Sum_probs=28.2

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCc
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG   75 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~   75 (78)
                      ++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+.
T Consensus       137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  198 (285)
T 1ozn_A          137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR  198 (285)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc
Confidence            44444433333344455555555555554433233344455555555555555433344333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.08  E-value=2.3e-10  Score=68.51  Aligned_cols=54  Identities=20%  Similarity=0.276  Sum_probs=26.6

Q ss_pred             CCceee-ecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLT-GSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~-~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.++ +.+|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.++
T Consensus       453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  507 (570)
T 2z63_A          453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK  507 (570)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence            444443 234444445555555555555554444444555555555555555555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.08  E-value=2.9e-11  Score=76.42  Aligned_cols=75  Identities=19%  Similarity=0.156  Sum_probs=57.5

Q ss_pred             CCcccc--hhhhcc----CCceeeecCCccccCCCCCceEecccCc-CCC-CCchhhhCCC-------CCCEEEcccCcc
Q 036517            2 IPLYRS--HLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNK-RTD-SIPESLGRFG-------CLIKLNLARNKL   66 (78)
Q Consensus         2 ~p~~~~--~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~-~~~-~~p~~~~~l~-------~L~~L~l~~n~l   66 (78)
                      +|..++  .++.|+    ++|.+.+.+|..+..+++|+.|++++|. +++ .+|..++.+.       +|+.|++++|.+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            677666  777776    7788888888888888899999998887 877 6777666554       788888888888


Q ss_pred             eeccCC--CCcCC
Q 036517           67 SGSIPT--SFGNL   77 (78)
Q Consensus        67 ~~~~p~--~~~~l   77 (78)
                      . .+|.  .++++
T Consensus       561 ~-~ip~~~~l~~L  572 (876)
T 4ecn_A          561 E-EFPASASLQKM  572 (876)
T ss_dssp             C-BCCCHHHHTTC
T ss_pred             C-ccCChhhhhcC
Confidence            7 7777  55544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.08  E-value=5.8e-10  Score=63.84  Aligned_cols=67  Identities=15%  Similarity=0.031  Sum_probs=46.8

Q ss_pred             ccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517            5 YRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus         5 ~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      .+..++.|+    ++|.+++..+..+..+++|+.|++++|.+.+..+..++.+++|++|++++|.+. .+|.
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~  141 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGE  141 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCS
T ss_pred             HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCc
Confidence            344444554    677777666667777888888888888877444444777888888888888777 5655

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.08  E-value=3.3e-10  Score=65.24  Aligned_cols=76  Identities=18%  Similarity=0.087  Sum_probs=59.7

Q ss_pred             CCcccch-hhhcc-CCceeeecCCcccc-CCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            2 IPLYRSH-LTILF-RNLYLTGSVPPEFG-DSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         2 ~p~~~~~-l~~l~-~~n~~~~~~p~~~~-~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      +|..+.. ++.|. ++|.+++..+..+. .+++|+.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+
T Consensus        33 iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  111 (361)
T 2xot_A           33 VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL  111 (361)
T ss_dssp             CCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             cCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCC
Confidence            4554433 45556 89999987777777 89999999999999997667789999999999999999994444445443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.07  E-value=5.1e-10  Score=65.93  Aligned_cols=74  Identities=23%  Similarity=0.218  Sum_probs=58.6

Q ss_pred             CCccc-chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC-CCcC
Q 036517            2 IPLYR-SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT-SFGN   76 (78)
Q Consensus         2 ~p~~~-~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~   76 (78)
                      +|..+ .+++.|. ++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+. .+|. .+..
T Consensus        69 iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~  145 (452)
T 3zyi_A           69 VPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEY  145 (452)
T ss_dssp             CCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSS
T ss_pred             cCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcc
Confidence            45444 3455666 888999888888999999999999999998777788999999999999999998 5554 3543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.05  E-value=5.4e-10  Score=63.41  Aligned_cols=66  Identities=24%  Similarity=0.328  Sum_probs=53.9

Q ss_pred             hhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517            8 HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF   74 (78)
Q Consensus         8 ~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~   74 (78)
                      .++.|. ++|.+++..+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+. .+|..+
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~  119 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM  119 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhh
Confidence            344555 788888766667889999999999999998777888999999999999999888 777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.05  E-value=2e-10  Score=59.74  Aligned_cols=57  Identities=23%  Similarity=0.310  Sum_probs=42.3

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCc--hhhhCCCCCCEEEcccCcceeccCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIP--ESLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p--~~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      ++|.+++.+|..+..+++|+.|++++|.+.+ ++  ..+..+++|+.|++++|.+. .+|.
T Consensus        79 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~-~~~~  137 (168)
T 2ell_A           79 SENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVT-NLND  137 (168)
T ss_dssp             ESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGG-TSTT
T ss_pred             cCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCc-chHH
Confidence            7777776666666678888888888888873 33  66777888888888888877 5554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.05  E-value=4.7e-10  Score=67.22  Aligned_cols=71  Identities=24%  Similarity=0.243  Sum_probs=61.9

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      +|..+..++.|+    ++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.
T Consensus       462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            455666666666    89999988899999999999999999999977777899999999999999999987774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.05  E-value=4.3e-10  Score=63.91  Aligned_cols=65  Identities=26%  Similarity=0.320  Sum_probs=49.1

Q ss_pred             hhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517            9 LTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF   74 (78)
Q Consensus         9 l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~   74 (78)
                      ++.|. ++|.+++..+..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+. .+|..+
T Consensus        56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~  121 (332)
T 2ft3_A           56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL  121 (332)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSC
T ss_pred             CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccc
Confidence            44444 777777666667888888888888888888666777888888888888888877 666543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.04  E-value=6.3e-10  Score=65.38  Aligned_cols=54  Identities=19%  Similarity=0.171  Sum_probs=26.8

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.++
T Consensus        72 ~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~  125 (440)
T 3zyj_A           72 HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT  125 (440)
T ss_dssp             CSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred             cCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence            445555444444555555555555555554333444445555555555555444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.04  E-value=9.7e-10  Score=63.57  Aligned_cols=54  Identities=24%  Similarity=0.226  Sum_probs=23.2

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..+..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.+.
T Consensus        77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  130 (390)
T 3o6n_A           77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS  130 (390)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC
Confidence            344444333334444444444444444444333333444444444444444444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.04  E-value=1.8e-10  Score=65.10  Aligned_cols=63  Identities=21%  Similarity=0.245  Sum_probs=41.6

Q ss_pred             CCceeeecCCccc--cCCCCCceEecccCcCCCCCchhhhCC-----CCCCEEEcccCcceeccCCCCcCC
Q 036517           14 RNLYLTGSVPPEF--GDSLHLQVFYLENNKRTDSIPESLGRF-----GCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus        14 ~~n~~~~~~p~~~--~~~~~L~~l~l~~n~~~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      ++|.+++.+|..+  ..+++|+.|++++|.+.+. |..++.+     ++|++|++++|.+.+..|..++++
T Consensus       103 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A          103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             EEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            6677776677665  6677777777777777754 6666555     677777777777764444555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.03  E-value=6.3e-10  Score=68.04  Aligned_cols=47  Identities=23%  Similarity=0.197  Sum_probs=21.5

Q ss_pred             ccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517           26 FGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus        26 ~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      |..+++|++|++++|.+.+..|..|+.+++|++|++++|.+.+..|.
T Consensus        93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  139 (680)
T 1ziw_A           93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG  139 (680)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred             hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch
Confidence            44444444444444444433334444444555555555444433333

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.03  E-value=1.1e-09  Score=60.80  Aligned_cols=54  Identities=20%  Similarity=0.145  Sum_probs=26.2

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.++
T Consensus       141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence            444444332233444555555555555555333334555555555555555555

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.03  E-value=5e-10  Score=62.93  Aligned_cols=54  Identities=17%  Similarity=0.231  Sum_probs=29.5

Q ss_pred             CCceeee-cCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTG-SVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~-~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++ ..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus       158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  212 (306)
T 2z66_A          158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF  212 (306)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence            4455543 34445555555555555555555444555555555666666655555

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.03  E-value=1.5e-10  Score=59.22  Aligned_cols=66  Identities=23%  Similarity=0.204  Sum_probs=55.1

Q ss_pred             chhhhcc-CCceee-ecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517            7 SHLTILF-RNLYLT-GSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF   74 (78)
Q Consensus         7 ~~l~~l~-~~n~~~-~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~   74 (78)
                      .+++.|. ++|.++ +.+|..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~   84 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA   84 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh
Confidence            4455566 888888 78888889999999999999999955  778899999999999999996566543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.03  E-value=8.9e-10  Score=62.53  Aligned_cols=53  Identities=21%  Similarity=0.271  Sum_probs=28.7

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++
T Consensus       224 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             CSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             CCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence            455555444444555555555555555555 45555555555555555555555

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.03  E-value=2.8e-10  Score=65.13  Aligned_cols=71  Identities=25%  Similarity=0.268  Sum_probs=57.9

Q ss_pred             CCccc-chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCC
Q 036517            2 IPLYR-SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS   73 (78)
Q Consensus         2 ~p~~~-~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~   73 (78)
                      +|..+ ..++.|. ++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|..
T Consensus        46 iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~  118 (353)
T 2z80_A           46 IPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSS  118 (353)
T ss_dssp             CCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHH
T ss_pred             ccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHh
Confidence            45544 2455566 889999766668999999999999999999777788999999999999999998 66643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.02  E-value=8.9e-10  Score=61.18  Aligned_cols=54  Identities=15%  Similarity=0.131  Sum_probs=25.7

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        60 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  113 (276)
T 2z62_A           60 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA  113 (276)
T ss_dssp             TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             CCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcc
Confidence            445554444444555555555555555554333344444444444444444444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.02  E-value=4.3e-10  Score=67.70  Aligned_cols=57  Identities=18%  Similarity=0.099  Sum_probs=31.5

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP   71 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p   71 (78)
                      ++|.+++..+..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+. .+|
T Consensus        60 s~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp  116 (562)
T 3a79_B           60 SQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NIS  116 (562)
T ss_dssp             CSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EEC
T ss_pred             CCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccC
Confidence            555555444445555555666666555555444555555555555555555555 444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.02  E-value=1.3e-09  Score=60.54  Aligned_cols=54  Identities=20%  Similarity=0.194  Sum_probs=25.2

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            444444333333444455555555555444322233445555555555555555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.02  E-value=5.4e-10  Score=70.10  Aligned_cols=46  Identities=22%  Similarity=0.192  Sum_probs=22.9

Q ss_pred             CccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCccee
Q 036517           23 PPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG   68 (78)
Q Consensus        23 p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~   68 (78)
                      |..|..+++|+.|++++|.+.+..|..|+.+++|++|++++|.+.+
T Consensus        66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  111 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD  111 (844)
T ss_dssp             TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred             HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence            3344445555555555555544444455555555555555555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.01  E-value=1.8e-10  Score=68.59  Aligned_cols=54  Identities=17%  Similarity=0.117  Sum_probs=23.6

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..|..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+.
T Consensus        29 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~   82 (520)
T 2z7x_B           29 SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV   82 (520)
T ss_dssp             CSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred             CCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence            444444333334444444444444444444333444444444444444444444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.01  E-value=9e-10  Score=65.06  Aligned_cols=74  Identities=19%  Similarity=0.043  Sum_probs=49.9

Q ss_pred             Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517            3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus         3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      |..+..++.|+    ++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..
T Consensus        73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  150 (477)
T 2id5_A           73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG  150 (477)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTT
T ss_pred             hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccC
Confidence            34455555555    677777444445677788888888888777666677777777777777777777554545544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.00  E-value=6.7e-10  Score=69.69  Aligned_cols=75  Identities=21%  Similarity=0.223  Sum_probs=52.1

Q ss_pred             Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchh--hhCCCCCCEEEcccCcceeccC-CCCc
Q 036517            3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPES--LGRFGCLIKLNLARNKLSGSIP-TSFG   75 (78)
Q Consensus         3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p-~~~~   75 (78)
                      |..+.+++.|+    ++|.+.+..|..+..+++|+.|++++|.+.+..|..  ++.+++|++|++++|.+.+..+ ..++
T Consensus        66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~  145 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG  145 (844)
T ss_dssp             TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred             HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence            34455566565    778888777778888888888888888887655554  7777888888888887774433 2344


Q ss_pred             CC
Q 036517           76 NL   77 (78)
Q Consensus        76 ~l   77 (78)
                      ++
T Consensus       146 ~L  147 (844)
T 3j0a_A          146 KL  147 (844)
T ss_dssp             TC
T ss_pred             hC
Confidence            43

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.00  E-value=1.3e-09  Score=64.10  Aligned_cols=67  Identities=22%  Similarity=0.151  Sum_probs=51.3

Q ss_pred             ccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517            5 YRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus         5 ~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      .+..++.|+    ++|.+++..+..|..+++|+.|++++|.+....+..|..+++|++|++++|.+. .+|.
T Consensus        83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~  153 (440)
T 3zyj_A           83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPS  153 (440)
T ss_dssp             TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECT
T ss_pred             HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCH
Confidence            444555555    788888777778888999999999999888555557888889999999988888 4443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.00  E-value=1.5e-09  Score=61.64  Aligned_cols=53  Identities=19%  Similarity=0.172  Sum_probs=36.7

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++
T Consensus       225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             CSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence            666666555556666777777777777776 66666777777777777777776

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.99  E-value=5.7e-10  Score=67.18  Aligned_cols=71  Identities=21%  Similarity=0.163  Sum_probs=52.5

Q ss_pred             cccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCccee-ccCCCCcCC
Q 036517            4 LYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG-SIPTSFGNL   77 (78)
Q Consensus         4 ~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l   77 (78)
                      ..+..++.|+    ++|.+++..|..|..+++|++|++++|.+. .+|..  .+++|++|++++|.+.+ .+|..++++
T Consensus        70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l  145 (562)
T 3a79_B           70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNL  145 (562)
T ss_dssp             GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGC
T ss_pred             hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhccc
Confidence            3556666665    888888877888888888999999888888 66655  67888888888888873 234555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.99  E-value=8.3e-10  Score=58.83  Aligned_cols=66  Identities=20%  Similarity=0.074  Sum_probs=54.3

Q ss_pred             Ccccchhhhcc----CCceeeecCCccccCCCCCceEecccCc-CCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517            3 PLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNK-RTDSIPESLGRFGCLIKLNLARNKLSGSIP   71 (78)
Q Consensus         3 p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p   71 (78)
                      |..+..++.|+    ++|.+++..+..+..+++|+.|++++|. +. .+| .+..+++|+.|++++|.+. .++
T Consensus       105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~-~~~  175 (197)
T 4ezg_A          105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH-DYR  175 (197)
T ss_dssp             SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC-CCT
T ss_pred             ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc-ChH
Confidence            45566666666    8899998778889999999999999998 65 666 6889999999999999988 554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.99  E-value=1.2e-09  Score=63.15  Aligned_cols=72  Identities=19%  Similarity=0.146  Sum_probs=56.4

Q ss_pred             ccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCch-hhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            5 YRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPE-SLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         5 ~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      .+..++.|+    ++|.+++..|..+..+++|+.|++++|.+. .+|. .|..+++|++|++++|.+.+..|..++.+
T Consensus        88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  164 (390)
T 3o6n_A           88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT  164 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSC
T ss_pred             hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCC
Confidence            455555555    888898777777899999999999999998 5554 46889999999999999985555556554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.99  E-value=3.7e-10  Score=67.25  Aligned_cols=70  Identities=23%  Similarity=0.143  Sum_probs=58.4

Q ss_pred             ccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCccee-ccCCCCcCC
Q 036517            5 YRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG-SIPTSFGNL   77 (78)
Q Consensus         5 ~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l   77 (78)
                      .+..++.|+    ++|.+++..|..+..+++|++|++++|.+. .+|..  .+++|++|++++|.+.+ .+|..++++
T Consensus        40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l  114 (520)
T 2z7x_B           40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNM  114 (520)
T ss_dssp             HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGC
T ss_pred             hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccC
Confidence            455555565    899999888889999999999999999999 67766  88999999999999985 467777665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.98  E-value=9.9e-10  Score=67.19  Aligned_cols=63  Identities=16%  Similarity=0.119  Sum_probs=35.5

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      ++|.+++..|..+..+++|+.|++++|.+.+..+..|+.+++|++|++++|.+.+..|..+++
T Consensus        57 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  119 (680)
T 1ziw_A           57 GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK  119 (680)
T ss_dssp             CSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTT
T ss_pred             CCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccc
Confidence            555566555555666666666666666666322234666666666666666665332334443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.97  E-value=1.5e-09  Score=66.00  Aligned_cols=70  Identities=24%  Similarity=0.265  Sum_probs=57.0

Q ss_pred             chhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCC-CcCC
Q 036517            7 SHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS-FGNL   77 (78)
Q Consensus         7 ~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l   77 (78)
                      ..++.|+    ++|.+++..+..+..+++|+.|++++|.+.+..|..|+.+++|++|++++|.+. .+|.. ++.+
T Consensus        72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l  146 (597)
T 3oja_B           72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNT  146 (597)
T ss_dssp             HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccC
Confidence            3444444    888999877778999999999999999999777778899999999999999999 66654 3443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.96  E-value=5.3e-10  Score=58.67  Aligned_cols=52  Identities=17%  Similarity=0.058  Sum_probs=24.7

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++.  +.+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        50 s~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~  101 (176)
T 1a9n_A           50 SDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV  101 (176)
T ss_dssp             CSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC
T ss_pred             CCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC
Confidence            44555432  34445555555555555555222223345555555555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.96  E-value=1.4e-09  Score=62.12  Aligned_cols=64  Identities=20%  Similarity=0.034  Sum_probs=52.8

Q ss_pred             cccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCccee
Q 036517            4 LYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG   68 (78)
Q Consensus         4 ~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~   68 (78)
                      ..|..++.|+    ++|.+++..|..|..+++|+.|+|++|.+.+..+..+..+. |+.|++.+|.+..
T Consensus        50 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           50 RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             hHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            3566666666    89999998888899999999999999999955555566666 9999999999873

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.94  E-value=9.2e-10  Score=60.06  Aligned_cols=43  Identities=19%  Similarity=0.163  Sum_probs=19.8

Q ss_pred             cccCCCCCceEeccc-CcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           25 EFGDSLHLQVFYLEN-NKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        25 ~~~~~~~L~~l~l~~-n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      .+..+++|+.|++++ |.+.+..+..|..+++|++|++++|.+.
T Consensus        75 ~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~  118 (239)
T 2xwt_C           75 SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK  118 (239)
T ss_dssp             TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC
T ss_pred             HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc
Confidence            444444555555544 4444332334444444554444444444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.93  E-value=1.6e-09  Score=56.84  Aligned_cols=57  Identities=18%  Similarity=0.105  Sum_probs=45.7

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCch--hhhCCCCCCEEEcccCcceeccCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPE--SLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      ++|.+++..+..+..+++|+.|++++|.+. .+|.  .+..+++|+.|++++|.+. .+|.
T Consensus        72 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~  130 (176)
T 1a9n_A           72 NNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKH  130 (176)
T ss_dssp             CSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTT
T ss_pred             CCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHh
Confidence            888888554444588899999999999986 6666  7888899999999999887 6665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.90  E-value=1.8e-09  Score=58.88  Aligned_cols=70  Identities=11%  Similarity=0.108  Sum_probs=55.3

Q ss_pred             hhhhcc-CCceeeecCCccccCCCCCceEecccCc-CCCCCchhhhCCCCCCEEEccc-CcceeccCCCCcCC
Q 036517            8 HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNK-RTDSIPESLGRFGCLIKLNLAR-NKLSGSIPTSFGNL   77 (78)
Q Consensus         8 ~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~-~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l   77 (78)
                      .++.|. ++|.+++..+..+..+++|+.|++++|. +....+..|..+++|++|++++ |.+++..+..+..+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l  104 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL  104 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence            455566 8899997766689999999999999997 8855556899999999999998 99984333445443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.87  E-value=5.6e-10  Score=63.13  Aligned_cols=54  Identities=20%  Similarity=0.213  Sum_probs=34.2

Q ss_pred             CCceeeecCCccccCC-----CCCceEecccCcCCCCCchhhhCCCCCCEEEcccCccee
Q 036517           14 RNLYLTGSVPPEFGDS-----LHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG   68 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~-----~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~   68 (78)
                      ++|.+++. |..+..+     ++|++|++++|.+.+..|..++.+++|++|++++|.+.+
T Consensus       129 s~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          129 RNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG  187 (312)
T ss_dssp             ESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred             cCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence            66666654 5555554     666777777776665555666666666777776666543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.78  E-value=2.6e-09  Score=63.35  Aligned_cols=67  Identities=30%  Similarity=0.377  Sum_probs=25.0

Q ss_pred             chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCC--CCchhhhCC-------------CCCCEEEcccCccee--
Q 036517            7 SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTD--SIPESLGRF-------------GCLIKLNLARNKLSG--   68 (78)
Q Consensus         7 ~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~--~~p~~~~~l-------------~~L~~L~l~~n~l~~--   68 (78)
                      ..++.|. ++|.++ .+|.   .+++|+.|++++|.+.+  .+|..++.+             ++|+.|++++|.+++  
T Consensus       337 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~  412 (454)
T 1jl5_A          337 PRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP  412 (454)
T ss_dssp             TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------
T ss_pred             CcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccc
Confidence            3344444 556665 3444   35667777777777766  556666555             567777777777765  


Q ss_pred             ccCCCCcCC
Q 036517           69 SIPTSFGNL   77 (78)
Q Consensus        69 ~~p~~~~~l   77 (78)
                      .+|.++..+
T Consensus       413 ~iP~sl~~L  421 (454)
T 1jl5_A          413 DIPESVEDL  421 (454)
T ss_dssp             ---------
T ss_pred             cchhhHhhe
Confidence            566655443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.76  E-value=1.5e-08  Score=60.46  Aligned_cols=46  Identities=20%  Similarity=0.151  Sum_probs=28.6

Q ss_pred             CCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517           29 SLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus        29 ~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      +++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. .+|..++.
T Consensus       190 l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~  235 (487)
T 3oja_A          190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRF  235 (487)
T ss_dssp             CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred             CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhcc
Confidence            5556666666666663 3444666777777777777777 46655543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.75  E-value=5.7e-09  Score=62.32  Aligned_cols=52  Identities=25%  Similarity=0.153  Sum_probs=26.4

Q ss_pred             CCceeeecCCcccc-CCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFG-DSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~-~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..|..+. .+++|+.|++++|.+.+. +. ...+++|+.|++++|.+.
T Consensus       152 s~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~  204 (487)
T 3oja_A          152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA  204 (487)
T ss_dssp             TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC
T ss_pred             CCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCC
Confidence            45555544444443 455555555555555532 21 223556666666666666

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.73  E-value=1.8e-08  Score=57.11  Aligned_cols=59  Identities=15%  Similarity=0.083  Sum_probs=36.4

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      ++|.+++. + ....+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..
T Consensus       177 ~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~  235 (317)
T 3o53_A          177 QYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRF  235 (317)
T ss_dssp             TTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred             CCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhc
Confidence            55555533 2 2223666667777777666 34455777777777777777777 56665544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.71  E-value=1.9e-08  Score=56.75  Aligned_cols=40  Identities=20%  Similarity=0.154  Sum_probs=23.7

Q ss_pred             CCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           28 DSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        28 ~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  182 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL  182 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc
Confidence            4555666666666665444455666666666666666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.70  E-value=3.9e-10  Score=60.16  Aligned_cols=51  Identities=14%  Similarity=0.137  Sum_probs=23.6

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++ +| .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus        56 s~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~  106 (198)
T 1ds9_A           56 STNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             SEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC
T ss_pred             CCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC
Confidence            4444443 33 4444455555555555444 34444444444444444444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.69  E-value=2.3e-08  Score=56.46  Aligned_cols=51  Identities=24%  Similarity=0.275  Sum_probs=28.1

Q ss_pred             CCceeeecCCccccCC---CCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDS---LHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~---~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..|+.+..+   ++|+.|++++|.++ .+|..+.  ++|+.|++++|.+.
T Consensus       232 s~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          232 SHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN  285 (310)
T ss_dssp             TTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred             CCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence            5555555445444444   45666666666655 4454432  45666666666655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.67  E-value=3.6e-09  Score=59.91  Aligned_cols=66  Identities=26%  Similarity=0.262  Sum_probs=53.2

Q ss_pred             hhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce-eccCCCCc
Q 036517            8 HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS-GSIPTSFG   75 (78)
Q Consensus         8 ~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~~~~   75 (78)
                      +++.|. ++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. +.+|..++
T Consensus       192 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  259 (317)
T 3o53_A          192 KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (317)
T ss_dssp             TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred             cCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence            344444 8899985 5666999999999999999999 67888999999999999999987 44444433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.67  E-value=3.7e-08  Score=56.06  Aligned_cols=56  Identities=20%  Similarity=0.293  Sum_probs=40.8

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP   71 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p   71 (78)
                      ++|.+++.  +.+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|
T Consensus       273 ~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          273 GSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             cCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            66766642  356777788888888888776667778888888888888888774433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.66  E-value=3.5e-08  Score=56.57  Aligned_cols=66  Identities=17%  Similarity=0.023  Sum_probs=38.9

Q ss_pred             CCccc-chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCc-hhhhCCCCCCE-EEcccCcce
Q 036517            2 IPLYR-SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIP-ESLGRFGCLIK-LNLARNKLS   67 (78)
Q Consensus         2 ~p~~~-~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p-~~~~~l~~L~~-L~l~~n~l~   67 (78)
                      ||..+ .+++.|. ++|.++...+.+|..+++|+.|++++|.+.+.+| ..|.+++++.. +.+..|++.
T Consensus        24 iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~   93 (350)
T 4ay9_X           24 IPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   93 (350)
T ss_dssp             CCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred             cCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence            55544 3455555 7777775444567778888888888877654443 23455555443 344445555

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.65  E-value=8.4e-08  Score=53.90  Aligned_cols=40  Identities=28%  Similarity=0.363  Sum_probs=18.2

Q ss_pred             ccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           26 FGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        26 ~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      +..+++|+.|++++|.+.+. +. +..+++|+.|++++|.++
T Consensus       152 l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          152 LSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             GGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC
T ss_pred             hccCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCcCC
Confidence            44444444444444444422 22 444444555555555444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.62  E-value=1e-08  Score=63.04  Aligned_cols=54  Identities=30%  Similarity=0.248  Sum_probs=34.9

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      ++|.++ .+|.   .+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..|.
T Consensus       249 s~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          249 SGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            555555 3443   4566777777777776 6676777777777777777777655443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.59  E-value=1.8e-07  Score=52.89  Aligned_cols=50  Identities=12%  Similarity=0.331  Sum_probs=23.3

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++ ++. +..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+.
T Consensus        71 ~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~  120 (308)
T 1h6u_A           71 KDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQIT  120 (308)
T ss_dssp             CSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCC
T ss_pred             cCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCC
Confidence            4444442 222 4455555555555555442 22 3444445555555555444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.58  E-value=1.7e-07  Score=52.70  Aligned_cols=50  Identities=30%  Similarity=0.355  Sum_probs=27.6

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++ + +.+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.
T Consensus       120 ~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          120 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             TTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             CCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence            4455543 2 3355555566666666655532  34556666666666666665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.58  E-value=4.9e-08  Score=54.73  Aligned_cols=62  Identities=21%  Similarity=0.212  Sum_probs=45.4

Q ss_pred             hhhhcc-CCceeee--cCCccccCCCCCceEecccCcCCCCCchhhhCCC--CCCEEEcccCcceeccC
Q 036517            8 HLTILF-RNLYLTG--SVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFG--CLIKLNLARNKLSGSIP   71 (78)
Q Consensus         8 ~l~~l~-~~n~~~~--~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~--~L~~L~l~~n~l~~~~p   71 (78)
                      .+..|. ++|.+++  .++..+..+++|+.|++++|.+.+.  ..+..+.  +|+.|++++|.+.+.+|
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            344444 8888887  4556677889999999999998854  2334444  89999999999886555

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.57  E-value=4.4e-08  Score=55.75  Aligned_cols=60  Identities=22%  Similarity=0.248  Sum_probs=48.2

Q ss_pred             cchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517            6 RSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus         6 ~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      +..++.|+    ++|.+++..+..+..+++|+.|++++|.+.+..|  +..+++|+.|++++|.++
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            34445554    8899998888889999999999999999995544  888999999999999876

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.56  E-value=2.1e-07  Score=51.69  Aligned_cols=53  Identities=23%  Similarity=0.302  Sum_probs=35.2

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP   71 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p   71 (78)
                      ++|.++ .++ .+..+++|+.|++++|.+.+ ++. +..+++|++|++++|.+. .+|
T Consensus        49 ~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~-~l~  101 (263)
T 1xeu_A           49 DNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLK-NLN  101 (263)
T ss_dssp             TTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCS-CCT
T ss_pred             cCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccC-CcC
Confidence            566666 344 56677777777777777773 444 677777777777777776 444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.54  E-value=2.5e-07  Score=56.83  Aligned_cols=40  Identities=30%  Similarity=0.471  Sum_probs=17.8

Q ss_pred             ccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           26 FGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        26 ~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      +..+++|+.|++++|.+.+..|  +..+++|+.|++++|.+.
T Consensus       149 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            4444444444444444442222  444444444444444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.53  E-value=8e-08  Score=58.67  Aligned_cols=35  Identities=29%  Similarity=0.326  Sum_probs=13.7

Q ss_pred             ceEecccCcCCCCCchhhhCCCCCCEEEcccCccee
Q 036517           33 QVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG   68 (78)
Q Consensus        33 ~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~   68 (78)
                      +.|++++|.++ .+|..+..+++|+.|++++|.+.+
T Consensus       210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence            33333333333 333333334444444444444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.52  E-value=8.1e-09  Score=55.02  Aligned_cols=58  Identities=26%  Similarity=0.315  Sum_probs=50.5

Q ss_pred             CCceeeecCCc------cccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517           14 RNLYLTGSVPP------EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF   74 (78)
Q Consensus        14 ~~n~~~~~~p~------~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~   74 (78)
                      ..+.+++..|.      .+..+++|+.|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+
T Consensus        26 ~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~   89 (198)
T 1ds9_A           26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD   89 (198)
T ss_dssp             SEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred             heeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence            67778877776      88999999999999999994 77 8899999999999999998 777644

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.51  E-value=2.3e-08  Score=59.27  Aligned_cols=30  Identities=13%  Similarity=0.169  Sum_probs=11.6

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCC
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLH   31 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~   31 (78)
                      +|+++++++.|+    ++|.+++.+|..++.+.+
T Consensus        26 iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~   59 (454)
T 1jl5_A           26 MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE   59 (454)
T ss_dssp             --------CCHHHHHHHHHHHHHTSCTTSCCCHH
T ss_pred             CChhHhcccchhhhhccCCcccccCCcccccchh
Confidence            455555554444    555555555555555443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.50  E-value=3.2e-07  Score=56.36  Aligned_cols=51  Identities=29%  Similarity=0.349  Sum_probs=28.2

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCccee
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG   68 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~   68 (78)
                      ++|.+.+ + +.+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+
T Consensus       117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A          117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             cCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence            4455543 2 2355555566666666655532  445566666666666666663

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.50  E-value=2.7e-07  Score=51.25  Aligned_cols=51  Identities=22%  Similarity=0.306  Sum_probs=29.3

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCc--------------------hhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIP--------------------ESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p--------------------~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++. +. +..+++|+.|++++|.+.+ +|                    +.+..+++|+.|++++|.++
T Consensus        71 ~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           71 SHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             CSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCC
T ss_pred             CCCccCCC-hh-hccCCCCCEEECCCCccCC-cCccccCcccEEEccCCccCCChhhcCcccccEEECCCCcCC
Confidence            55666532 32 5566666666666665552 22                    23556666777777777666

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.49  E-value=2.4e-07  Score=57.04  Aligned_cols=60  Identities=30%  Similarity=0.385  Sum_probs=40.1

Q ss_pred             hhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            9 LTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         9 l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      +..|. ++|.+++ +|   ..+++|+.|++++|.+. .+|.   .+++|+.|++++|.++ .+|..++++
T Consensus       223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l  283 (622)
T 3g06_A          223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHL  283 (622)
T ss_dssp             CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGS
T ss_pred             CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhc
Confidence            34444 6666663 44   34567777777777777 5555   5677888888888888 777766654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.49  E-value=3.6e-07  Score=51.68  Aligned_cols=18  Identities=22%  Similarity=0.303  Sum_probs=7.1

Q ss_pred             hhCCCCCCEEEcccCcce
Q 036517           50 LGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        50 ~~~l~~L~~L~l~~n~l~   67 (78)
                      +..+++|+.|++++|.+.
T Consensus       147 l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          147 LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             GGGCTTCCEEECCSSCCC
T ss_pred             ccCCCCccEEEccCCcCC
Confidence            333334444444444333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.49  E-value=3.5e-07  Score=54.15  Aligned_cols=50  Identities=28%  Similarity=0.361  Sum_probs=26.9

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++. +. +..+++|++|++++|.+.+ .+. +..+++|++|++++|.+.
T Consensus        76 s~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~  125 (466)
T 1o6v_A           76 SNNQLTDI-TP-LKNLTKLVDILMNNNQIAD-ITP-LANLTNLTGLTLFNNQIT  125 (466)
T ss_dssp             CSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred             CCCccCCc-hh-hhccccCCEEECCCCcccc-Chh-hcCCCCCCEEECCCCCCC
Confidence            55555532 22 5555666666666665553 222 555556666666655555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.46  E-value=3.5e-07  Score=54.33  Aligned_cols=49  Identities=22%  Similarity=0.190  Sum_probs=22.3

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++ +| .+..+++|+.|++++|.+.+ +|  ++.+++|++|++++|.+.
T Consensus        50 s~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~   98 (457)
T 3bz5_A           50 HNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLT   98 (457)
T ss_dssp             CSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred             cCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCc
Confidence            4444443 23 34445555555555555442 22  444444444444444444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.46  E-value=4.6e-07  Score=53.61  Aligned_cols=38  Identities=16%  Similarity=0.267  Sum_probs=14.8

Q ss_pred             CCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           28 DSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        28 ~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      .+++|+.|++++|.+.+..|  +..+++|+.|++++|.+.
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence            33333444444443332222  333444444444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.45  E-value=3.7e-08  Score=60.14  Aligned_cols=67  Identities=25%  Similarity=0.329  Sum_probs=50.0

Q ss_pred             CCcccchhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCC-------CEEEcccCcceeccCCC
Q 036517            2 IPLYRSHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCL-------IKLNLARNKLSGSIPTS   73 (78)
Q Consensus         2 ~p~~~~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L-------~~L~l~~n~l~~~~p~~   73 (78)
                      +|..+.++..|. ++|.+++ +|. +.  ++|+.|++++|.++ .+|. +..  +|       +.|++++|.++ .+|..
T Consensus       155 lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~  225 (571)
T 3cvr_A          155 LPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPEN  225 (571)
T ss_dssp             CCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGG
T ss_pred             CCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHH
Confidence            344334555555 8899885 777 65  89999999999999 7777 544  67       99999999999 89987


Q ss_pred             CcCC
Q 036517           74 FGNL   77 (78)
Q Consensus        74 ~~~l   77 (78)
                      ++++
T Consensus       226 l~~l  229 (571)
T 3cvr_A          226 ILSL  229 (571)
T ss_dssp             GGGS
T ss_pred             HhcC
Confidence            7654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.39  E-value=1.1e-06  Score=52.22  Aligned_cols=49  Identities=18%  Similarity=0.235  Sum_probs=29.3

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCccee
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG   68 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~   68 (78)
                      ++|.+++.   .+..+++|+.|++++|.+.+ +|  ++.+++|+.|++++|.+.+
T Consensus       199 ~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          199 DTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             cCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            44555532   25556666666666666664 44  5566666777777666664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.36  E-value=4.5e-07  Score=52.02  Aligned_cols=57  Identities=16%  Similarity=0.217  Sum_probs=45.8

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTS   73 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~   73 (78)
                      +++.++ .+|..+  .++++.|++++|.++...+..|.++++|++|++++|.+.+.+|..
T Consensus        17 ~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~   73 (350)
T 4ay9_X           17 QESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD   73 (350)
T ss_dssp             ESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred             cCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence            567777 677766  468999999999999443457999999999999999987677753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.33  E-value=9.8e-08  Score=54.05  Aligned_cols=51  Identities=25%  Similarity=0.290  Sum_probs=27.5

Q ss_pred             CCceeeec-CCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccC
Q 036517           14 RNLYLTGS-VPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARN   64 (78)
Q Consensus        14 ~~n~~~~~-~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n   64 (78)
                      ++|.+++. ++..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus       101 ~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B          101 SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            44444433 4444555555555555555555444555555555666666555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.33  E-value=1.7e-07  Score=53.04  Aligned_cols=54  Identities=19%  Similarity=0.177  Sum_probs=25.9

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCC-CchhhhCCCCCCEEEcccCccee
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDS-IPESLGRFGCLIKLNLARNKLSG   68 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~   68 (78)
                      .+|.+.+..+. +..+++|+.|++++|.+.+. ++..+..+++|++|++++|.+.+
T Consensus        78 ~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~  132 (336)
T 2ast_B           78 PRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD  132 (336)
T ss_dssp             TTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH
T ss_pred             CCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH
Confidence            44444433322 33455555555555554433 44445555555555555555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.21  E-value=2.3e-07  Score=53.65  Aligned_cols=47  Identities=13%  Similarity=0.132  Sum_probs=22.1

Q ss_pred             cCCccccCCCCCceEecccCcCCCC----CchhhhC--CCCCCEEEcccCcce
Q 036517           21 SVPPEFGDSLHLQVFYLENNKRTDS----IPESLGR--FGCLIKLNLARNKLS   67 (78)
Q Consensus        21 ~~p~~~~~~~~L~~l~l~~n~~~~~----~p~~~~~--l~~L~~L~l~~n~l~   67 (78)
                      .+|..+..+++|+.|++++|.+.+.    ++..+..  +++|+.|++++|.+.
T Consensus       235 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            3444444555555555555554432    2333322  455555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.20  E-value=1.4e-07  Score=54.49  Aligned_cols=68  Identities=19%  Similarity=0.234  Sum_probs=51.7

Q ss_pred             Ccccchhhhcc----CCceeeec----CCcccc--CCCCCceEecccCcCCC----CCchhh-hCCCCCCEEEcccCcce
Q 036517            3 PLYRSHLTILF----RNLYLTGS----VPPEFG--DSLHLQVFYLENNKRTD----SIPESL-GRFGCLIKLNLARNKLS   67 (78)
Q Consensus         3 p~~~~~l~~l~----~~n~~~~~----~p~~~~--~~~~L~~l~l~~n~~~~----~~p~~~-~~l~~L~~L~l~~n~l~   67 (78)
                      |..+..++.|+    ++|.+++.    ++..+.  .+++|+.|++++|.+.+    .+|..+ .++++|++|++++|.+.
T Consensus       237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            33444455555    88888765    456663  48999999999999996    377777 67899999999999988


Q ss_pred             ecc
Q 036517           68 GSI   70 (78)
Q Consensus        68 ~~~   70 (78)
                      +..
T Consensus       317 ~~~  319 (386)
T 2ca6_A          317 EED  319 (386)
T ss_dssp             TTS
T ss_pred             cch
Confidence            543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.13  E-value=1.5e-07  Score=54.15  Aligned_cols=43  Identities=23%  Similarity=0.259  Sum_probs=20.4

Q ss_pred             cccCCC-CCceEecccCcCCCCCchhhhCC-----CCCCEEEcccCcce
Q 036517           25 EFGDSL-HLQVFYLENNKRTDSIPESLGRF-----GCLIKLNLARNKLS   67 (78)
Q Consensus        25 ~~~~~~-~L~~l~l~~n~~~~~~p~~~~~l-----~~L~~L~l~~n~l~   67 (78)
                      .+..++ +|+.|++++|.+.+..+..+..+     ++|++|++++|.+.
T Consensus        45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~   93 (362)
T 3goz_A           45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS   93 (362)
T ss_dssp             HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence            344444 45555555555554434333332     45555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.12  E-value=2.1e-06  Score=48.16  Aligned_cols=42  Identities=24%  Similarity=0.245  Sum_probs=36.6

Q ss_pred             cCCCCCceEecccCcCCC--CCchhhhCCCCCCEEEcccCccee
Q 036517           27 GDSLHLQVFYLENNKRTD--SIPESLGRFGCLIKLNLARNKLSG   68 (78)
Q Consensus        27 ~~~~~L~~l~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~   68 (78)
                      ..+++|+.|++++|.+.+  .+|..+..+++|+.|+|++|.+++
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~  210 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  210 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence            457899999999999996  445778899999999999999984

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.04  E-value=3.1e-07  Score=53.92  Aligned_cols=55  Identities=25%  Similarity=0.269  Sum_probs=35.1

Q ss_pred             CCceeeecCCccccC-----CCCCceEecccCcCCC----CCchhhhCCCCCCEEEcccCccee
Q 036517           14 RNLYLTGSVPPEFGD-----SLHLQVFYLENNKRTD----SIPESLGRFGCLIKLNLARNKLSG   68 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~-----~~~L~~l~l~~n~~~~----~~p~~~~~l~~L~~L~l~~n~l~~   68 (78)
                      ++|.+++..+..+..     .++|+.|++++|.+.+    .+|..+..+++|++|++++|.+.+
T Consensus       349 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             cCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            566665443333322     4577777777777764    556667777777777777777653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.03  E-value=8.7e-07  Score=51.00  Aligned_cols=58  Identities=14%  Similarity=-0.030  Sum_probs=47.8

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCc----hhhhCCC-CCCEEEcccCcceeccC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIP----ESLGRFG-CLIKLNLARNKLSGSIP   71 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p----~~~~~l~-~L~~L~l~~n~l~~~~p   71 (78)
                      +.|.+++.+|..+....+|+.|++++|.+.+..+    +.+..++ +|++|++++|.+.+..+
T Consensus         6 s~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~   68 (362)
T 3goz_A            6 TLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS   68 (362)
T ss_dssp             CCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH
T ss_pred             ccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH
Confidence            5677888877777777779999999999997666    7788888 99999999999985433

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.77  E-value=5.2e-05  Score=38.17  Aligned_cols=52  Identities=25%  Similarity=0.260  Sum_probs=38.7

Q ss_pred             CCceee-ecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLT-GSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~-~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      +++.++ ..+|..+  ..+|+.|+|++|.++..-+..|..+++|+.|+|++|.+.
T Consensus        16 s~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           16 GRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             CSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            555554 2455443  346899999999999555566889999999999999764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.69  E-value=8.4e-07  Score=52.08  Aligned_cols=43  Identities=23%  Similarity=0.156  Sum_probs=21.0

Q ss_pred             cccCCCCCceEecccCcCCCCCchhhhC-----CCCCCEEEcccCcce
Q 036517           25 EFGDSLHLQVFYLENNKRTDSIPESLGR-----FGCLIKLNLARNKLS   67 (78)
Q Consensus        25 ~~~~~~~L~~l~l~~n~~~~~~p~~~~~-----l~~L~~L~l~~n~l~   67 (78)
                      .+..+++|+.|++++|.+.+..+..+..     .++|+.|++++|.+.
T Consensus       336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            3344455555555555554332222221     345666666665554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.52  E-value=0.00023  Score=40.46  Aligned_cols=43  Identities=14%  Similarity=0.026  Sum_probs=23.7

Q ss_pred             ccccCCCCCc-eEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           24 PEFGDSLHLQ-VFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        24 ~~~~~~~~L~-~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      .+|..+.+|+ .+++.. .+...-+..|.++.+|+.++++.|.+.
T Consensus       267 ~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          267 RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred             HHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence            3455555555 555554 343233455666666666666666665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.50  E-value=8.6e-06  Score=49.17  Aligned_cols=55  Identities=11%  Similarity=-0.012  Sum_probs=38.2

Q ss_pred             CCceeee-cCCccccCCCCCceEecccCcCCCC-CchhhhCCCCCCEEEcccCccee
Q 036517           14 RNLYLTG-SVPPEFGDSLHLQVFYLENNKRTDS-IPESLGRFGCLIKLNLARNKLSG   68 (78)
Q Consensus        14 ~~n~~~~-~~p~~~~~~~~L~~l~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~   68 (78)
                      ++|.+++ .++..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.++.
T Consensus       471 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          471 GYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             CSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             cCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            6666664 2333456778888888888887533 34445678888888888888763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.46  E-value=8.3e-06  Score=49.25  Aligned_cols=54  Identities=6%  Similarity=0.054  Sum_probs=32.7

Q ss_pred             CCceeeec----CCccccCCCCCceEecccCcCCC----CCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGS----VPPEFGDSLHLQVFYLENNKRTD----SIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~----~p~~~~~~~~L~~l~l~~n~~~~----~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++.    ++.....+++|+.|+++.|.+.+    .++..+..+++|+.|++++|.+.
T Consensus       172 ~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  233 (592)
T 3ogk_B          172 EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL  233 (592)
T ss_dssp             TTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred             ccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence            56666544    22223456777777777777652    23344556777777777777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.36  E-value=0.00046  Score=39.22  Aligned_cols=60  Identities=18%  Similarity=0.130  Sum_probs=43.9

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCC-EEEcccCcceeccC-CCCcC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLI-KLNLARNKLSGSIP-TSFGN   76 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~-~L~l~~n~l~~~~p-~~~~~   76 (78)
                      ++|.++..-..+|..+.+|+.+++..| +...-+..|.++.+|+ .+++++ .++ .++ ..|..
T Consensus       234 ~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~  295 (329)
T 3sb4_A          234 SKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMG  295 (329)
T ss_dssp             TTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTT
T ss_pred             CCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhC
Confidence            677777554556888999999999887 6645556789999999 999987 566 444 34444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.30  E-value=2.1e-05  Score=45.80  Aligned_cols=41  Identities=24%  Similarity=0.230  Sum_probs=18.3

Q ss_pred             cCCCCCceEecccCcCCCC----CchhhhCCCCCCEEEcccCcce
Q 036517           27 GDSLHLQVFYLENNKRTDS----IPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        27 ~~~~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ...++|+.|++++|.+...    ++..+...++|++|++++|.+.
T Consensus       208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            3344455555555544421    1222333445555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.24  E-value=3.6e-05  Score=44.81  Aligned_cols=54  Identities=22%  Similarity=0.174  Sum_probs=30.3

Q ss_pred             CCceeee----cCCccccCCCCCceEecccCcCCCC----CchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTG----SVPPEFGDSLHLQVFYLENNKRTDS----IPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~----~~p~~~~~~~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.++.    .+...+...++|+.|++++|.+...    ++..+...++|+.|++++|.+.
T Consensus       163 s~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             CSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             CCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            5555543    1223334566677777777666532    2344555566777777777665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.86  E-value=0.00084  Score=33.70  Aligned_cols=42  Identities=21%  Similarity=0.090  Sum_probs=32.6

Q ss_pred             CCcccc-hhhhcc-CCceeeecCCccccCCCCCceEecccCcCC
Q 036517            2 IPLYRS-HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRT   43 (78)
Q Consensus         2 ~p~~~~-~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~   43 (78)
                      +|..+. +++.|. ++|.++...+..|..+++|+.|++.+|.+.
T Consensus        25 vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           25 LPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             SCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            555553 467777 999999655556888999999999999874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.81  E-value=0.0001  Score=44.50  Aligned_cols=54  Identities=11%  Similarity=0.154  Sum_probs=29.0

Q ss_pred             CCceeeecCCcccc-CCCCCceEecccC-cCCCC-CchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFG-DSLHLQVFYLENN-KRTDS-IPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~-~~~~L~~l~l~~n-~~~~~-~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      +++.+++..+..+. .+++|+.|++++| .+... ++..+..+++|++|++++|.+.
T Consensus       113 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~  169 (594)
T 2p1m_B          113 KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD  169 (594)
T ss_dssp             ESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEE
T ss_pred             eCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccC
Confidence            45555544444443 4566666666665 33311 3333445666666666666644

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.65  E-value=0.00038  Score=36.75  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=18.6

Q ss_pred             CCCCceEecccCcCCCC----CchhhhCCCCCCEEEc--ccCcce
Q 036517           29 SLHLQVFYLENNKRTDS----IPESLGRFGCLIKLNL--ARNKLS   67 (78)
Q Consensus        29 ~~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~L~l--~~n~l~   67 (78)
                      .+.|+.|++++|.+...    +.+.+...+.|++|++  ++|.+.
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            34555555555555421    2233344445555555  445443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.57  E-value=0.00034  Score=36.93  Aligned_cols=42  Identities=21%  Similarity=0.278  Sum_probs=22.4

Q ss_pred             ccCCCCCceEecccCcCCCC----CchhhhCCCCCCEEEcccCcce
Q 036517           26 FGDSLHLQVFYLENNKRTDS----IPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        26 ~~~~~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      +...+.|+.|++++|.+...    +.+.+...+.|++|++++|.+.
T Consensus        61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            44455666666666665421    2233344456666666666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.50  E-value=0.00012  Score=42.56  Aligned_cols=14  Identities=29%  Similarity=0.242  Sum_probs=6.7

Q ss_pred             CCCCCEEEcccCcc
Q 036517           53 FGCLIKLNLARNKL   66 (78)
Q Consensus        53 l~~L~~L~l~~n~l   66 (78)
                      +++|+.|++++|.+
T Consensus       306 l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          306 IKHLKFINMKYNYL  319 (362)
T ss_dssp             HTTCSEEECCSBBC
T ss_pred             CCcceEEECCCCcC
Confidence            34455555544443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.43  E-value=0.00031  Score=42.44  Aligned_cols=38  Identities=11%  Similarity=0.107  Sum_probs=16.6

Q ss_pred             CCCCceEecccCcCCCCCchhh-hCCCCCCEEEcccCcc
Q 036517           29 SLHLQVFYLENNKRTDSIPESL-GRFGCLIKLNLARNKL   66 (78)
Q Consensus        29 ~~~L~~l~l~~n~~~~~~p~~~-~~l~~L~~L~l~~n~l   66 (78)
                      +++|+.|++++|.+++.....+ ..+++|+.|++++|.+
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            4445555555544432222222 3344555555555444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.92  E-value=0.012  Score=31.25  Aligned_cols=52  Identities=8%  Similarity=0.056  Sum_probs=27.6

Q ss_pred             CCceeeecCCccccCCCCCceEecccCc-CCCCCchhhhCC----CCCCEEEcccCc
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNK-RTDSIPESLGRF----GCLIKLNLARNK   65 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~-~~~~~p~~~~~l----~~L~~L~l~~n~   65 (78)
                      +++.++..--..+..+++|+.|+++++. ++..--..+..+    ++|++|++++|.
T Consensus        69 s~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           69 TDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG  125 (176)
T ss_dssp             ESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred             cCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence            4444554333345667777777777663 442211223332    257777777663

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.51  E-value=0.045  Score=32.27  Aligned_cols=41  Identities=7%  Similarity=0.069  Sum_probs=22.0

Q ss_pred             cccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           25 EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        25 ~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      +|..+.+|+.+.+..+ +...-...|.++ +|+.+++.+|.+.
T Consensus       318 aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          318 LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            4555555665555333 332334456666 6666666666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.35  E-value=0.0035  Score=33.22  Aligned_cols=34  Identities=9%  Similarity=0.057  Sum_probs=14.9

Q ss_pred             CCceEecccCcCCCCCchhhhCCCCCCEEEcccC
Q 036517           31 HLQVFYLENNKRTDSIPESLGRFGCLIKLNLARN   64 (78)
Q Consensus        31 ~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n   64 (78)
                      .|+.||++++.++..--..+..+++|+.|+++++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            3445555544443222223344445555555444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=93.77  E-value=0.021  Score=33.33  Aligned_cols=40  Identities=10%  Similarity=0.113  Sum_probs=22.6

Q ss_pred             CCCCceEecccCcCCCCCchhhh---CCCCCCEEEcccCccee
Q 036517           29 SLHLQVFYLENNKRTDSIPESLG---RFGCLIKLNLARNKLSG   68 (78)
Q Consensus        29 ~~~L~~l~l~~n~~~~~~p~~~~---~l~~L~~L~l~~n~l~~   68 (78)
                      +++|+.|++++|.+....+..+.   .+++|++|+++.|.+..
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            56666666666655432222222   35667777777776653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=93.20  E-value=0.23  Score=29.31  Aligned_cols=16  Identities=13%  Similarity=-0.085  Sum_probs=7.5

Q ss_pred             cccCCCCCceEecccC
Q 036517           25 EFGDSLHLQVFYLENN   40 (78)
Q Consensus        25 ~~~~~~~L~~l~l~~n   40 (78)
                      +|..+.+|+.+.+..|
T Consensus       266 aF~~c~~L~~l~l~~~  281 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGS  281 (401)
T ss_dssp             TTTTCTTCCEEEEESS
T ss_pred             HhhCCCCCCEEEeCCc
Confidence            3444445555544443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.71  E-value=0.08  Score=28.54  Aligned_cols=42  Identities=29%  Similarity=0.307  Sum_probs=21.7

Q ss_pred             ccCCCCCceEecccCcCCC----CCchhhhCCCCCCEEEcccCcce
Q 036517           26 FGDSLHLQVFYLENNKRTD----SIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        26 ~~~~~~L~~l~l~~n~~~~----~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      +..-+.|+.|++++|.+..    .+.+.+..-+.|+.|+|++|.+.
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3344556666666666542    12233334455666666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=92.66  E-value=0.18  Score=29.37  Aligned_cols=38  Identities=13%  Similarity=0.070  Sum_probs=19.4

Q ss_pred             cccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEccc
Q 036517           25 EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLAR   63 (78)
Q Consensus        25 ~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~   63 (78)
                      +|..+.+|+.+.+..+ +...-...|.++.+|+.+++..
T Consensus       338 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          338 SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            4555555555555443 3322234455666666665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=91.97  E-value=0.57  Score=27.24  Aligned_cols=40  Identities=10%  Similarity=0.175  Sum_probs=22.3

Q ss_pred             cccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCc
Q 036517           25 EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK   65 (78)
Q Consensus        25 ~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~   65 (78)
                      +|..+.+|+.+.+..+ +...-...|.++.+|+.+++.++.
T Consensus       329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            4555666666666432 432334456666667766666553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=90.43  E-value=0.57  Score=26.97  Aligned_cols=39  Identities=13%  Similarity=0.061  Sum_probs=22.0

Q ss_pred             cccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEccc
Q 036517           25 EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLAR   63 (78)
Q Consensus        25 ~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~   63 (78)
                      .|..+.+|+.+.+..+.+...-...|.++.+|+.+.+..
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             ccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence            355556666666655555533334566666666666643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=89.37  E-value=0.4  Score=27.60  Aligned_cols=50  Identities=14%  Similarity=0.121  Sum_probs=34.5

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARN   64 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n   64 (78)
                      ..+.++..-..+|..+.+|+.+.+..+ ++..-...|.++.+|+.+.+..+
T Consensus       294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            444555333456888999999998654 55333567889999998887543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=88.42  E-value=1.2  Score=25.82  Aligned_cols=45  Identities=18%  Similarity=0.113  Sum_probs=29.8

Q ss_pred             ccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517           24 PEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP   71 (78)
Q Consensus        24 ~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p   71 (78)
                      .+|..+.+|+.+++..+ +...-...|.++.+|+.+.+..+ ++ .+.
T Consensus       314 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~  358 (394)
T 4fs7_A          314 EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIG  358 (394)
T ss_dssp             TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EEC
T ss_pred             hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-Eeh
Confidence            45677788888877543 44233456888888888888765 44 443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=86.17  E-value=1.6  Score=25.42  Aligned_cols=39  Identities=10%  Similarity=0.238  Sum_probs=23.6

Q ss_pred             cccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccC
Q 036517           25 EFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARN   64 (78)
Q Consensus        25 ~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n   64 (78)
                      +|..+.+|+.+.+..+ ++..-...|.++.+|+.+.+..+
T Consensus       306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s  344 (394)
T 4gt6_A          306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS  344 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred             eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence            4566677777766543 33233456777777777777543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	78
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.7 bits (104), Expect = 1e-07
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 33  QVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK 78
               L NN+   ++P+ L +   L  LN++ N L G IP   GNL+
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQ 291

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 8e-07
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 1   MIPLYRSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLN 60
            + L ++   +  RN  + G++P        L    +  N     IP+  G         
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSA 297

Query: 61  LARNKLSGSIP 71
            A NK     P
Sbjct: 298 YANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 1e-04
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 21  SVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK 78
           S          LQ  +  NNK +D    SL     +  L+   N++S   P    NL 
Sbjct: 320 SDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLT 373

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.6 bits (80), Expect = 2e-04
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 31  HLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK 78
            L+   + NNK    +P    R   L +L  + N L+  +P    NLK
Sbjct: 285 SLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQNLK 327

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 34.0 bits (76), Expect = 6e-04
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 9/60 (15%)

Query: 21  SVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSG--SIPTSFGNLK 78
            +P        L+      N     +PE       L +L++  N L     IP S  +L+
Sbjct: 298 ELPALPP---RLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLREFPDIPESVEDLR 350

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.1 bits (74), Expect = 0.001
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 21 SVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNLK 78
           VP +        +  L+NNK T+           L  L L  NK+S   P +F  L 
Sbjct: 24 KVPKDLPPDT--ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 79

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (73), Expect = 0.002
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 7  SHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNK 65
          SHL +      LT ++PP+        + +L  N        +L  +  L +LNL R +
Sbjct: 11 SHLEVNCDKRNLT-ALPPDLPKDT--TILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (71), Expect = 0.003
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 31 HLQVFYLENNKRTD----SIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL 77
            QV  L++   T+     I  +L     L +LNL  N+L           
Sbjct: 28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 78

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 31.5 bits (70), Expect = 0.004
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 4/78 (5%)

Query: 1   MIPLYRSHLTILFRNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLN 60
           + PL                S      +   L     ++NK +D  P  L     LI+++
Sbjct: 144 ISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVH 201

Query: 61  LARNKLSGSIPTSFGNLK 78
           L  N++S   P    N  
Sbjct: 202 LKNNQISDVSP--LANTS 217

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.43
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.29
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.28
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.16
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.07
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.06
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.05
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.03
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.02
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.94
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.91
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.84
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.65
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.58
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.56
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.49
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.45
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.43
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.39
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.36
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.32
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.31
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.28
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.02
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.96
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.86
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.78
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.2
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.94
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.2
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.0
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.02
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	92.58
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	89.98

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.43  E-value=7e-14  Score=77.60  Aligned_cols=75  Identities=28%  Similarity=0.534  Sum_probs=50.2

Q ss_pred             CCcccchhhhcc----CC-ceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517            2 IPLYRSHLTILF----RN-LYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~-n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      +|+++++++.|+    ++ |.++|.+|++++++++|++|++++|.+.+..+..+..+..|+.+++++|.+.+.+|..+++
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~  147 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             CChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhcc
Confidence            567777777776    43 7777788888888888888888887776655555555555555555555555555554443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.32  E-value=2.6e-12  Score=67.22  Aligned_cols=54  Identities=30%  Similarity=0.327  Sum_probs=29.7

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+....+..+..+++|+.|++++|++....+..|.++++|++|+|++|.++
T Consensus        62 ~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~  115 (192)
T d1w8aa_          62 KRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             CSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCcccc
Confidence            455555444445555555555555555555444445555556666666666555

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.1e-12  Score=64.50  Aligned_cols=73  Identities=16%  Similarity=-0.009  Sum_probs=57.0

Q ss_pred             CCcccchhhhcc----CCc-eeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCc
Q 036517            2 IPLYRSHLTILF----RNL-YLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG   75 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n-~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~   75 (78)
                      +|..+..++.+.    .+| .++...+++|..+++|+.|++++|+++...+..|..+++|++|++++|+++ .+|....
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~  100 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTV  100 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTT
T ss_pred             CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhh
Confidence            354554444444    444 588666677999999999999999999666788999999999999999999 7776543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.29  E-value=4.3e-12  Score=70.29  Aligned_cols=77  Identities=25%  Similarity=0.456  Sum_probs=68.6

Q ss_pred             CCCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517            1 MIPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus         1 ~~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      .+|+++++++.|+    ++|.+.+..+..+..+..|+.++++.|.+.+.+|..+..++.++.+++++|.+.+.+|..++.
T Consensus        92 ~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~  171 (313)
T d1ogqa_          92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS  171 (313)
T ss_dssp             CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred             ccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccc
Confidence            3788898888887    889999888888999999999999999998899999999999999999999999999987665


Q ss_pred             C
Q 036517           77 L   77 (78)
Q Consensus        77 l   77 (78)
                      +
T Consensus       172 l  172 (313)
T d1ogqa_         172 F  172 (313)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.28  E-value=5.8e-12  Score=65.88  Aligned_cols=76  Identities=26%  Similarity=0.237  Sum_probs=61.6

Q ss_pred             CCccc-chhhhcc-CCceeeecC-CccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517            2 IPLYR-SHLTILF-RNLYLTGSV-PPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus         2 ~p~~~-~~l~~l~-~~n~~~~~~-p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      ||+.+ ..++.|. ++|.+++.+ +..|..+++|+.|++++|.+....+..|..+++|++|++++|+++...|..|.++
T Consensus        23 iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l  101 (192)
T d1w8aa_          23 IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL  101 (192)
T ss_dssp             CCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTC
T ss_pred             cCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCC
Confidence            66666 3466677 999998655 4457899999999999999998888899999999999999999995445556654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=7.3e-11  Score=58.10  Aligned_cols=54  Identities=20%  Similarity=0.306  Sum_probs=36.5

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP   71 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p   71 (78)
                      ++|.++ .+|+.+..+++|+.|++++|.++ .+| .+..+++|+.+++++|++. .+|
T Consensus        28 s~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~-~~~   81 (124)
T d1dcea3          28 SHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQ-QSA   81 (124)
T ss_dssp             CSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCC-SSS
T ss_pred             CCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccC-CCC
Confidence            667776 56666777777777777777776 444 3666777777777777766 443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.07  E-value=4e-10  Score=55.39  Aligned_cols=67  Identities=27%  Similarity=0.216  Sum_probs=54.4

Q ss_pred             CCcccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCC-chhhhCCCCCCEEEcccCcceeccC
Q 036517            2 IPLYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSI-PESLGRFGCLIKLNLARNKLSGSIP   71 (78)
Q Consensus         2 ~p~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p   71 (78)
                      +|+.+..++.|+    ++|.+++ ++ .+..+++|+.+++++|++...- ...+..+++|+++++++|.+. ..+
T Consensus        35 lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~-~~~  106 (124)
T d1dcea3          35 LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEE  106 (124)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG-GSS
T ss_pred             chhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC-cCc
Confidence            677777777777    8899984 44 5899999999999999998432 256889999999999999987 443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.4e-10  Score=61.51  Aligned_cols=63  Identities=25%  Similarity=0.213  Sum_probs=46.7

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      ++|.+....+..+..++.++.+++++|.+++..+..|..+++|++|++++|.++ .+|+.+..+
T Consensus       132 ~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~  194 (266)
T d1p9ag_         132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS  194 (266)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             cccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCC
Confidence            566666554555667788888888888888666667788888888888888888 788766543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1e-10  Score=63.59  Aligned_cols=72  Identities=22%  Similarity=0.193  Sum_probs=52.3

Q ss_pred             CCcccc-hhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcC
Q 036517            2 IPLYRS-HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGN   76 (78)
Q Consensus         2 ~p~~~~-~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~   76 (78)
                      ||+.+. +++.|. ++|.+++..+..|..+++|+.|++++|.++ .++ .++.+++|++|++++|.++ ..+..+..
T Consensus        25 iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~   98 (266)
T d1p9ag_          25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQT   98 (266)
T ss_dssp             CCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCS-SCCCCTTT
T ss_pred             eCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccccc-cccccccc
Confidence            566663 466666 888888655567888888999999888887 454 3567788888888888887 55555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.03  E-value=3.8e-10  Score=62.11  Aligned_cols=72  Identities=24%  Similarity=0.319  Sum_probs=58.4

Q ss_pred             CCccc-chhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCC
Q 036517            2 IPLYR-SHLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSF   74 (78)
Q Consensus         2 ~p~~~-~~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~   74 (78)
                      +|..+ ..++.|. ++|.++...+.+|..+++|+.+++++|.+....|..|..++.|++|++++|+++ .+|..+
T Consensus        25 lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~   98 (305)
T d1xkua_          25 VPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM   98 (305)
T ss_dssp             CCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC
T ss_pred             cCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch
Confidence            56555 3455666 889998544457999999999999999999667888999999999999999998 777654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.02  E-value=6.1e-10  Score=61.27  Aligned_cols=57  Identities=21%  Similarity=0.281  Sum_probs=45.5

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      ++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.++ .++.
T Consensus       203 s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~  259 (305)
T d1xkua_         203 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGS  259 (305)
T ss_dssp             CSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred             ccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccCh
Confidence            677787776777888888888888888887 67778888888888888888887 6653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.3e-10  Score=61.97  Aligned_cols=54  Identities=22%  Similarity=0.299  Sum_probs=21.3

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++..+.++..+++|+.++++.|.+.+..|..|..++++++|++++|.+.
T Consensus       161 ~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccc
Confidence            333333333333333444444444444443333333444444444444444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.2e-09  Score=59.71  Aligned_cols=67  Identities=22%  Similarity=0.131  Sum_probs=57.8

Q ss_pred             cccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceecc
Q 036517            4 LYRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSI   70 (78)
Q Consensus         4 ~~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~   70 (78)
                      ..+..++.|.    ++|.+++..|..|..+++|+.++++.|.+.+..+..|+.+.+|++|++++|.+.+..
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence            3445566665    889999888999999999999999999999877888999999999999999987543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.5e-09  Score=55.11  Aligned_cols=62  Identities=23%  Similarity=0.015  Sum_probs=49.9

Q ss_pred             ccchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517            5 YRSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus         5 ~~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      .|..++.|+    ++|.++...+.+|..+++|+.|++++|.++ .+|........++.|++++|.+.
T Consensus        51 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          51 DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             hhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            455555665    899999777888999999999999999999 56655444457999999999874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3e-09  Score=54.32  Aligned_cols=52  Identities=17%  Similarity=0.083  Sum_probs=24.9

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.++. + +.+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus        49 s~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~  100 (162)
T d1a9na_          49 SDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV  100 (162)
T ss_dssp             CSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC
T ss_pred             CCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccccceecccccc
Confidence            4555542 2 23445555555555555555222233344555555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.3e-08  Score=50.93  Aligned_cols=65  Identities=18%  Similarity=0.079  Sum_probs=50.2

Q ss_pred             cchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCc--hhhhCCCCCCEEEcccCcceeccCC
Q 036517            6 RSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIP--ESLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus         6 ~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p--~~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      +..++.|+    ++|.++...+..+..+++|+.|++++|.+. .++  ..+..+++|+++++++|.+. ..|.
T Consensus        59 ~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~  129 (162)
T d1a9na_          59 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKH  129 (162)
T ss_dssp             CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTT
T ss_pred             cccCcchhhhhcccccccCCCccccccccccccceecccccc-ccccccccccccccchhhcCCCccc-cccc
Confidence            34444454    899998654444678999999999999998 454  35788999999999999987 5553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.58  E-value=9.5e-08  Score=50.53  Aligned_cols=53  Identities=21%  Similarity=0.342  Sum_probs=42.6

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP   71 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p   71 (78)
                      .+|.+.+.  ..+..+++|+.|++++|.+. .++ .+..+++|++|++++|+++ .++
T Consensus       159 ~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~-~l~-~l~~l~~L~~L~Ls~N~lt-~i~  211 (227)
T d1h6ua2         159 GNAQVSDL--TPLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS-DVS  211 (227)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECTTSCCC-BCG
T ss_pred             cccccccc--hhhcccccceecccCCCccC-CCh-hhcCCCCCCEEECcCCcCC-CCc
Confidence            66766532  34788999999999999998 454 3888999999999999998 665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.56  E-value=8.5e-08  Score=53.53  Aligned_cols=52  Identities=19%  Similarity=0.227  Sum_probs=42.2

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceec
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGS   69 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~   69 (78)
                      ++|.+++. + .+..+++|+.|++++|.++ .++ .+..+++|++|++++|.+++.
T Consensus       315 s~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         315 YFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             CSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBC
T ss_pred             CCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCC
Confidence            67777753 3 3788999999999999988 455 588899999999999999843

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.49  E-value=9.2e-08  Score=53.40  Aligned_cols=55  Identities=20%  Similarity=0.251  Sum_probs=37.4

Q ss_pred             hhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517            9 LTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus         9 l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++.|. +++.++. + +.+..+++|++|++++|.++ .++. ++++++|++|++++|.+.
T Consensus        46 l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~-~l~~-l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          46 VTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             CCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC
T ss_pred             CCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCC-CCcc-ccCCcccccccccccccc
Confidence            33344 6666663 3 34667778888888888877 4443 777788888888888777

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.45  E-value=4.1e-07  Score=47.31  Aligned_cols=53  Identities=21%  Similarity=0.352  Sum_probs=40.1

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIP   71 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p   71 (78)
                      ++|.+. .+ +.+..+++++.+++.+|.++ .++ .++++++|++|++++|+++ .++
T Consensus       136 ~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~-~l~-~l~~l~~L~~L~ls~N~i~-~i~  188 (199)
T d2omxa2         136 SSNTIS-DI-SALSGLTSLQQLNFSSNQVT-DLK-PLANLTTLERLDISSNKVS-DIS  188 (199)
T ss_dssp             CSSCCC-CC-GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCC-CCG
T ss_pred             hhhhhc-cc-cccccccccccccccccccc-CCc-cccCCCCCCEEECCCCCCC-CCc
Confidence            667665 23 35777888888888888887 343 4788899999999999888 554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.43  E-value=5.5e-07  Score=47.21  Aligned_cols=58  Identities=24%  Similarity=0.315  Sum_probs=42.5

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCcCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFGNL   77 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   77 (78)
                      .+|.+++  +..+..+++|+.+++++|.+. .++ .+.++++|+.|++++|.++ .+|. +.++
T Consensus       142 ~~n~l~~--~~~~~~l~~L~~l~l~~n~l~-~i~-~l~~l~~L~~L~Ls~N~i~-~l~~-l~~l  199 (210)
T d1h6ta2         142 GNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRA-LAGL  199 (210)
T ss_dssp             CSSCCCC--CGGGGGCTTCSEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCC-BCGG-GTTC
T ss_pred             ccccccc--ccccccccccccccccccccc-ccc-cccCCCCCCEEECCCCCCC-CChh-hcCC
Confidence            5555553  334667888999999999888 444 3788999999999999988 6663 4443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.39  E-value=3.3e-07  Score=50.39  Aligned_cols=59  Identities=24%  Similarity=0.211  Sum_probs=41.7

Q ss_pred             hhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCCCCc
Q 036517            8 HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPTSFG   75 (78)
Q Consensus         8 ~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~   75 (78)
                      +++.|. ++|.++ .+|..   +++|+.|++++|.++ .+|+.   +.+|++|++++|.++ .+|....
T Consensus       285 ~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~  344 (353)
T d1jl5a_         285 SLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPE  344 (353)
T ss_dssp             TCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCT
T ss_pred             CCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcccc
Confidence            344455 777777 56643   567888888888887 66643   457889999999988 7775443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.36  E-value=3.4e-07  Score=48.02  Aligned_cols=40  Identities=30%  Similarity=0.302  Sum_probs=22.4

Q ss_pred             ccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           26 FGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        26 ~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      +..+++|+.|++++|.+++ ++ .++.+++|++|++++|.++
T Consensus        64 l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             HhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc
Confidence            4555666666666666552 33 2455556666666666555

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=4.2e-07  Score=48.17  Aligned_cols=61  Identities=15%  Similarity=0.077  Sum_probs=34.5

Q ss_pred             CCcccc-hhhhcc-CCceeeecCCccccCCCCCceEecccCcCCCCC-chhhhCCCCCCEEEcc
Q 036517            2 IPLYRS-HLTILF-RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSI-PESLGRFGCLIKLNLA   62 (78)
Q Consensus         2 ~p~~~~-~l~~l~-~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~-p~~~~~l~~L~~L~l~   62 (78)
                      +|+.+. ++++|. ++|.++...+..|..+++|++|++++|.+...+ +..|..++.++.+++.
T Consensus        23 iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          23 IPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             CCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             cCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            454442 455555 677776444445777777777777777655322 2234445555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.32  E-value=1.4e-08  Score=53.29  Aligned_cols=51  Identities=14%  Similarity=0.145  Sum_probs=21.9

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.++ .++ .+..+++|+.|++++|.+. .++..+..++.|+.|++++|.++
T Consensus        56 s~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~  106 (198)
T d1m9la_          56 STNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             SEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC
T ss_pred             cccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc
Confidence            444444 222 3444555555555555544 33333333333444444444433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.31  E-value=5.5e-07  Score=46.80  Aligned_cols=50  Identities=20%  Similarity=0.270  Sum_probs=29.2

Q ss_pred             CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      +++.++. + +.+..+++|++|++++|.+++ ++. ++.+++|++|++++|.+.
T Consensus        48 ~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          48 DRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             TTSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCC-c-cccccCCCcCcCccccccccC-ccc-ccCCcccccccccccccc
Confidence            5555552 2 235566666677776666663 332 666666666666666655

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.28  E-value=1.5e-06  Score=47.77  Aligned_cols=13  Identities=31%  Similarity=0.381  Sum_probs=6.5

Q ss_pred             CCCEEEcccCcce
Q 036517           55 CLIKLNLARNKLS   67 (78)
Q Consensus        55 ~L~~L~l~~n~l~   67 (78)
                      .|++|++++|.+.
T Consensus        99 ~L~~L~L~~n~l~  111 (353)
T d1jl5a_          99 LLEYLGVSNNQLE  111 (353)
T ss_dssp             TCCEEECCSSCCS
T ss_pred             ccccccccccccc
Confidence            3455555555544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.17  E-value=1.8e-06  Score=45.51  Aligned_cols=54  Identities=17%  Similarity=0.227  Sum_probs=42.6

Q ss_pred             cchhhhcc----CCceeeecCCccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEccc
Q 036517            6 RSHLTILF----RNLYLTGSVPPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLAR   63 (78)
Q Consensus         6 ~~~l~~l~----~~n~~~~~~p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~   63 (78)
                      +..++.|+    ++|.+++ ++ .+..+++|++|++++|+++ .++ .++++++|+.|++++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt-~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEEEE
T ss_pred             hcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCC-CCc-ccccCCCCCEEEeeC
Confidence            44555555    8888884 44 4888999999999999998 555 388999999999974

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=6.4e-07  Score=45.38  Aligned_cols=58  Identities=26%  Similarity=0.078  Sum_probs=35.1

Q ss_pred             hhhcc-CCceeeecC--CccccCCCCCceEecccCcCCCCCch-hhhCCCCCCEEEcccCcce
Q 036517            9 LTILF-RNLYLTGSV--PPEFGDSLHLQVFYLENNKRTDSIPE-SLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus         9 l~~l~-~~n~~~~~~--p~~~~~~~~L~~l~l~~n~~~~~~p~-~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++.|. ++|.++..-  +..+..+++|+.|++++|.+. .+++ .+.....++.+++++|.+.
T Consensus        67 L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          67 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             CCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             CCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcC
Confidence            33444 777776422  233556777777888877777 3433 2333446777777777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.96  E-value=5.3e-07  Score=47.07  Aligned_cols=47  Identities=23%  Similarity=0.235  Sum_probs=40.3

Q ss_pred             CccccCCCCCceEecccCcCCCCCchhhhCCCCCCEEEcccCcceeccCC
Q 036517           23 PPEFGDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLARNKLSGSIPT   72 (78)
Q Consensus        23 p~~~~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~   72 (78)
                      +..+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.++ .+|.
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~   87 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIEN   87 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSS
T ss_pred             hhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccc
Confidence            346778999999999999998 554 5889999999999999998 7764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1.7e-06  Score=43.77  Aligned_cols=45  Identities=24%  Similarity=0.167  Sum_probs=37.0

Q ss_pred             ccCCCCCceEecccCcCCCC--CchhhhCCCCCCEEEcccCcceeccC
Q 036517           26 FGDSLHLQVFYLENNKRTDS--IPESLGRFGCLIKLNLARNKLSGSIP   71 (78)
Q Consensus        26 ~~~~~~L~~l~l~~n~~~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p   71 (78)
                      +..+++|+.|++++|+++..  ++..+..+++|+.|++++|.++ .++
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~  107 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SER  107 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGG
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cch
Confidence            34688999999999999843  2456788999999999999998 554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=3e-05  Score=40.80  Aligned_cols=61  Identities=16%  Similarity=0.272  Sum_probs=38.9

Q ss_pred             CCceeeecCCccccCCCCCceE-ecccCcCCCCCc-hhhhCCCCCCEEEcccCcceeccCCC-CcCC
Q 036517           14 RNLYLTGSVPPEFGDSLHLQVF-YLENNKRTDSIP-ESLGRFGCLIKLNLARNKLSGSIPTS-FGNL   77 (78)
Q Consensus        14 ~~n~~~~~~p~~~~~~~~L~~l-~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l   77 (78)
                      .+|.++. ++.......++..+ ++.+|.++ .+| ..|.++++|++|++++|+++ .+|.. +.++
T Consensus       161 ~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l  224 (242)
T d1xwdc1         161 NKNGIQE-IHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENL  224 (242)
T ss_dssp             CSSCCCE-ECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTC
T ss_pred             ccccccc-cccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCC
Confidence            5666664 33333344554444 45667777 454 45788899999999999888 66653 4443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.0002  Score=38.76  Aligned_cols=49  Identities=20%  Similarity=0.090  Sum_probs=29.4

Q ss_pred             ceeeecCCccccCCCCCceEecccC-cCCCCCchhhhCCCCCCEEEcccC
Q 036517           16 LYLTGSVPPEFGDSLHLQVFYLENN-KRTDSIPESLGRFGCLIKLNLARN   64 (78)
Q Consensus        16 n~~~~~~p~~~~~~~~L~~l~l~~n-~~~~~~p~~~~~l~~L~~L~l~~n   64 (78)
                      ..+++.....+..+++|++|+++++ .++......++.+++|+.|+++++
T Consensus       186 ~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3455555555666777777777663 454444444566677777776654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0001  Score=39.98  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=17.2

Q ss_pred             cCCCCCceEecccCcCCCCCchhhhCCCCCCEEEccc
Q 036517           27 GDSLHLQVFYLENNKRTDSIPESLGRFGCLIKLNLAR   63 (78)
Q Consensus        27 ~~~~~L~~l~l~~n~~~~~~p~~~~~l~~L~~L~l~~   63 (78)
                      ..+++|+.|+++++.+....+..+..+++|++|++++
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             HhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            3444555555554444433334444444455555444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0001  Score=41.43  Aligned_cols=54  Identities=26%  Similarity=0.317  Sum_probs=35.2

Q ss_pred             CCceeeec----CCcccc-CCCCCceEecccCcCCCC----CchhhhCCCCCCEEEcccCcce
Q 036517           14 RNLYLTGS----VPPEFG-DSLHLQVFYLENNKRTDS----IPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~~----~p~~~~-~~~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      ++|.+++.    +.+.+. ....|+.|++++|.++..    +++.+..+++|++|++++|.+.
T Consensus       348 s~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         348 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             eeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            66666532    233332 355688888888887632    3445666788888888888775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=6e-05  Score=42.36  Aligned_cols=54  Identities=20%  Similarity=0.169  Sum_probs=34.5

Q ss_pred             CCceeee----cCCccccCCCCCceEecccCcCCCC----Cchhhh-CCCCCCEEEcccCcce
Q 036517           14 RNLYLTG----SVPPEFGDSLHLQVFYLENNKRTDS----IPESLG-RFGCLIKLNLARNKLS   67 (78)
Q Consensus        14 ~~n~~~~----~~p~~~~~~~~L~~l~l~~n~~~~~----~p~~~~-~l~~L~~L~l~~n~l~   67 (78)
                      .+|.++.    .+...+...++|+.|++++|.+...    +.+.+. ...+|++|++++|.+.
T Consensus        35 ~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it   97 (460)
T d1z7xw1          35 DDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT   97 (460)
T ss_dssp             ESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred             CCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcc
Confidence            6666653    2344466788899999998877521    111221 1247889999988876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.20  E-value=0.00047  Score=37.96  Aligned_cols=16  Identities=13%  Similarity=0.007  Sum_probs=7.1

Q ss_pred             CCCCCceEecccCcCC
Q 036517           28 DSLHLQVFYLENNKRT   43 (78)
Q Consensus        28 ~~~~L~~l~l~~n~~~   43 (78)
                      ..+.|+.|++++|.+.
T Consensus       241 ~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         241 SWPNLRELGLNDCLLS  256 (344)
T ss_dssp             GCTTCCEEECTTCCCC
T ss_pred             ccccchhhhhhcCccC
Confidence            3444444444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.00  E-value=0.0011  Score=36.42  Aligned_cols=42  Identities=26%  Similarity=0.267  Sum_probs=22.7

Q ss_pred             ccCCCCCceEecccCcCCCC----CchhhhCCCCCCEEEcccCcce
Q 036517           26 FGDSLHLQVFYLENNKRTDS----IPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        26 ~~~~~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      +...++|+.|++++|.+...    +...+..++.|++|++++|.+.
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            44556666666666655321    2233445556666666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.02  E-value=0.011  Score=29.47  Aligned_cols=39  Identities=18%  Similarity=0.161  Sum_probs=19.5

Q ss_pred             CCCCCceEecccCcCCCCC----chhhhCCCCCCEEEcccCcc
Q 036517           28 DSLHLQVFYLENNKRTDSI----PESLGRFGCLIKLNLARNKL   66 (78)
Q Consensus        28 ~~~~L~~l~l~~n~~~~~~----p~~~~~l~~L~~L~l~~n~l   66 (78)
                      ..+.|+.|++++|.+...-    -..+...++|++|++++|.+
T Consensus        70 ~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          70 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            3455666666666554221    12233345566666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.58  E-value=0.023  Score=28.15  Aligned_cols=43  Identities=28%  Similarity=0.300  Sum_probs=31.0

Q ss_pred             cccCCCCCceEecccCcCCC----CCchhhhCCCCCCEEEcccCcce
Q 036517           25 EFGDSLHLQVFYLENNKRTD----SIPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        25 ~~~~~~~L~~l~l~~n~~~~----~~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      .+...+.|+.|++++|.+..    .+.+.+...+.|+.|++++|.+.
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            45566778888888887752    23345556678888999888776

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.98  E-value=0.076  Score=26.02  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=24.9

Q ss_pred             cccCCCCCceEecccCcCCCC----CchhhhCCCCCCEEEcccCcce
Q 036517           25 EFGDSLHLQVFYLENNKRTDS----IPESLGRFGCLIKLNLARNKLS   67 (78)
Q Consensus        25 ~~~~~~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~   67 (78)
                      .+...++|+.|++++|.+...    +.+.+.....++.+++++|.+.
T Consensus        41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            344566777777777766532    1223444566677777666543