Citrus Sinensis ID: 036526

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAKITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAIKVYARYTLRILDQVGAKHKSFQGKVSSLNEPETGFLVNDVCLVEAEVAVLGISTAM
Secondary Structure (PSIPRED)
cEEEEccccccccccccEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEcccccEEEEEccccccccccccccHHHHccccccccccccccccEEEEEEEEEEEEcEEccccEEEccEEEEEEEcccccccccEEccEEEEEcccEEEEEEEEcccccccccEEEEEEEEccccccccEEEEEEEEEEEccccccEEEEEEEccccccccccEEEccEEEEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEcccccEEEEcccccccccccccccHHHcccccccEEEccEEEEEEEEEEEccccccccEEccccccccccEEEEEEccHHcccccccccEEEEcccEEEEEEEEcccccccccEEEEEEEEccccccccEEEEEEEEEEEEccccccEEEEEEHHHHccccccEEEccEEEEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
klviypkgnksknakDHISLYLAVAdtssltfgwevnAVSRLFLldqnqdsySVAQDAVGKErrrfnglklewgfdqfipleafndasngypvddtcvfGAEVFVKERNIIEGECLSMAKITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLypmgngcgdgdhlSLFLAFEDSTLEAIKVYARYTLRILDQVGAKhksfqgkvsslnepetgflVNDVCLVEAEVAVLGISTAM
Flexible Loop (DISEMBL)
klviypkgnksknakDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAKITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAIKVYARYTLRILDQVGAKHKSFQGKVSSLNEPETGFLVNDVCLVEAEVAVLGISTAM
Low Complexity Region (SEG)
KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAKITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAIKVYARYTLRILDQVGAKHKSFQGKVSSLNEPETGFLVNDVCLVEAEVAVLGISTAM
Disordered region (IsUnstruct)
****************HISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAKITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAIKVYARYTLRILDQVGAKHKSFQGKVSSLNEPETGFLVNDVCLVEAEVAVLGI****
Disordered Region (DISOPRED)
KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAKITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAIKVYARYTLRILDQVGAK**SFQGKVSSLNEPETGFLVNDVCLVEAEVAVLGISTA*
Disordered Region (DISEMBL)
KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAKITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAIKVYARYTLRILDQVGAKHKSFQGKVSSLNEPETGFLVNDVCLVEAEVAVLGISTAM
Disordered Region (DISPRO)
KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAKITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAIKVYARYTLRILDQVGAKHKSFQGKVSSLNEPETGFLVNDVCLVEAEVAVLGIS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAKITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAIKVYARYTLRILDQVGAKHKSFQGKVSSLNEPETGFLVNDVCLVEAEVAVLGISTAM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q9FPT1	1116	Ubiquitin carboxyl-termin	no	no	0.481	0.103	0.330	1e-14
Q84WU2	1115	Ubiquitin carboxyl-termin	no	no	0.464	0.100	0.318	1e-13
Q8RY18	1055	MATH domain-containing pr	no	no	0.319	0.072	0.345	7e-06
Q9UTT1	1129	Ubiquitin carboxyl-termin	yes	no	0.261	0.055	0.373	0.0002
Q8T126	1304	Probable inactive serine/	no	no	0.883	0.163	0.240	0.0006

>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 23/139 (16%)

Query: 119 AKITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFE 178
           A+     KF W + NFS+ + R+  S VF  G +KW+I+++P GN     DHLS++L   
Sbjct: 49  AEDPPTLKFTWTIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNV---DHLSMYLDVS 105

Query: 179 D--STLEAIKVYARYTLRILDQVGAKH-------KSFQGK-----------VSSLNEPET 218
           D  S       YA+++L +++Q+  ++         F  +           +S L +P  
Sbjct: 106 DAASLPYGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSR 165

Query: 219 GFLVNDVCLVEAEVAVLGI 237
           G+LVND  LVEAEVAV  +
Sbjct: 166 GYLVNDTVLVEAEVAVRKV 184

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 23/135 (17%)

Query: 123 SGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDST- 181
              KF W +  F++L+ R+  S VF  G +KW+I+++P GN     DHLS++L   D+  
Sbjct: 52  PSLKFTWTIPMFTRLNTRKHYSDVFVVGGYKWRILIFPKGNNV---DHLSMYLDVADAAN 108

Query: 182 -LEAIKVYARYTLRILDQVGAKH-------KSFQGK-----------VSSLNEPETGFLV 222
                  Y++++L +++QV  ++         F  +           +S L EP  G+LV
Sbjct: 109 LPYGWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRGYLV 168

Query: 223 NDVCLVEAEVAVLGI 237
           ND  L+EAEVAV  +
Sbjct: 169 NDTVLIEAEVAVRKV 183

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 126 KFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFL--AFEDSTLE 183
           K  W +E FS +++R     VF  G +KW I++YP   GC   +HLSLFL  A  +  L 
Sbjct: 70  KNTWTIEKFSDINKRELRGDVFEVGGYKWYILIYPQ--GCDVCNHLSLFLCVAHHEKLLP 127

Query: 184 AIKVYARYTLRILDQVGAKHK 204
               +A++T+ + ++   K K
Sbjct: 128 GWSHFAQFTIAVSNKDPKKSK 148

Arabidopsis thaliana (taxid: 3702)

>sp|Q9UTT1|UBP21_SCHPO Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp21 PE=3 SV=2

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 123 SGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAF-EDST 181
           +   + W+V+NFS L E +  S +F AG   W+IVL+P   GC   ++ S+FL +     
Sbjct: 50  AHASYSWVVKNFSTL-EDKTYSPLFKAGHTTWRIVLFP--KGCNQTEYASVFLEYLPQCK 106

Query: 182 LEAIKVY 188
           +EAI+ Y
Sbjct: 107 VEAIRKY 113

Involved in regulating the steady-state levels of proteins including prp4.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8T126|FNKC_DICDI Probable inactive serine/threonine-protein kinase fnkC OS=Dictyostelium discoideum GN=fnkC PE=3 SV=1

 Score = 44.7 bits (104), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 113/254 (44%), Gaps = 41/254 (16%)

Query: 5    YPKGNKSKNAKDHISLYLAVAD--TSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKE 62
            Y  G K  +    +S++++  D   +  T   E +   +L L++Q   + S+ + +    
Sbjct: 1059 YSNG-KDASTSGKLSIFISNCDLLNNPFTIFLEKSISYKLTLINQKNPNESIQKSS---- 1113

Query: 63   RRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAKIT 122
               F+  +   G+  FI L +  + +NG+ V++T        +K R  I+    S    T
Sbjct: 1114 SHTFSIKEFNHGYGSFIGLFSLLNPNNGFLVNNT--------IKVR--IDAAPTSPLVNT 1163

Query: 123  SGCKFVWMVENFS---KLDERRQE---SQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLA 176
                 + + + FS    +  ++ E   S +F +   KW I +YPMG      +++S+FL 
Sbjct: 1164 YDKYNIGLNQAFSYSVPMMSKKSEPFISPIFMSCGRKWIIKIYPMGQP--SSNYMSVFLE 1221

Query: 177  FEDS-------TLEAI-KVYARYTLRILDQVGAKHKS-------FQGKVSSLNEPETGFL 221
            + D        +LE I ++Y   +++   Q     KS       F G VS+L +P+ GFL
Sbjct: 1222 YRDEGEENVHFSLELISQLYPEQSIKYWVQYRFNSKSNSFGYPKFIG-VSTLMDPDMGFL 1280

Query: 222  VNDVCLVEAEVAVL 235
            VND  ++   +  L
Sbjct: 1281 VNDTIILNVSILQL 1294

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
297830352	309	hypothetical protein ARALYDRAFT_479214 [	0.975	0.760	0.498	5e-65
21537273	309	unknown [Arabidopsis thaliana]	0.975	0.760	0.498	9e-65
449441502	316	PREDICTED: BTB/POZ and MATH domain-conta	0.987	0.753	0.492	9e-62
449522688	316	PREDICTED: BTB/POZ and MATH domain-conta	0.987	0.753	0.496	1e-61
255556544	455	nucleic acid binding protein, putative [	0.970	0.514	0.519	5e-61
11994555	304	unnamed protein product [Arabidopsis tha	0.975	0.773	0.498	4e-60
18401489	309	TRAF-like family protein [Arabidopsis th	0.975	0.760	0.498	4e-60
356519881	310	PREDICTED: uncharacterized protein LOC10	0.995	0.774	0.490	8e-57
357479139	311	Ubiquitin carboxyl-terminal hydrolase [M	0.995	0.771	0.459	1e-54
224100507	249	predicted protein [Populus trichocarpa]	0.892	0.863	0.504	2e-54

>gi|297830352|ref|XP_002883058.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata] gi|297328898|gb|EFH59317.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata]

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 131/263 (49%), Positives = 173/263 (65%), Gaps = 28/263 (10%)

Query: 1   KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
           KLV+YP GNKSKN KDH+S+YLA+AD+SSL+ GWEV AV RL+LLDQN+D+Y + Q   G
Sbjct: 53  KLVLYPNGNKSKNTKDHVSVYLALADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---G 109

Query: 61  KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFV-KERNIIEGECLSMA 119
            E RRF+ +K EWGFD+FIP   F+DASNGY ++DTC+FGA+VFV KER    GECLSM 
Sbjct: 110 NE-RRFHAVKREWGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMI 168

Query: 120 KITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFED 179
           K  +  K VW +ENFSKLD+   +S  F AG+ KWK+  YP G   G G HLS++L   D
Sbjct: 169 KDATSSKHVWKIENFSKLDKESYDSNAFFAGDRKWKVRFYPTGTKQGTGTHLSIYLTLVD 228

Query: 180 --STLEAIKVYARYTLRILDQVGAKHKSFQGKVSS-------------------LNEPET 218
             +  +  K++  +T+RI DQ+  +H    GKV+                      +P +
Sbjct: 229 PETISDGTKIFVEFTIRIFDQLQGRH--IAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNS 286

Query: 219 GFLVNDVCLVEAEVAVLGISTAM 241
           G L+ DVCLVEA+V V GI++A+
Sbjct: 287 GLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537273|gb|AAM61614.1| unknown [Arabidopsis thaliana]

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 131/263 (49%), Positives = 173/263 (65%), Gaps = 28/263 (10%)

Query: 1   KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
           KLV+YP GNKSKN KDH+S+YLA+AD+SSL+ GWEV AV RL+LLDQN+D+Y + Q   G
Sbjct: 53  KLVLYPNGNKSKNTKDHVSVYLALADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---G 109

Query: 61  KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFV-KERNIIEGECLSMA 119
            E RRF+ +K EWGFD+FIP   F+D+SNGY ++DTC+FGA+VFV KER    GECLSM 
Sbjct: 110 NE-RRFHSVKREWGFDKFIPTGTFSDSSNGYLMEDTCMFGADVFVSKERRSGRGECLSMI 168

Query: 120 KITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFED 179
           K  +  K VW +ENFSKLD+   +S  F AG+ KWKI  YP G   G G HLS++L   D
Sbjct: 169 KDATSSKHVWKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVD 228

Query: 180 --STLEAIKVYARYTLRILDQVGAKHKSFQGKVSS-------------------LNEPET 218
             +  +  K++  +T+RI DQ+  +H    GKV+                      +P +
Sbjct: 229 PETISDGTKIFVEFTIRIFDQLQGRH--IAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNS 286

Query: 219 GFLVNDVCLVEAEVAVLGISTAM 241
           G L+ DVCLVEA+V V GI++A+
Sbjct: 287 GLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441502|ref|XP_004138521.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 130/264 (49%), Positives = 167/264 (63%), Gaps = 26/264 (9%)

Query: 1   KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
           KLV++P G+KSKN  DHISLYL +A T SL   WEV  V RLFLLDQN+D+Y   +D   
Sbjct: 55  KLVLHPHGDKSKNGNDHISLYLEIAGTDSLQPSWEVFVVYRLFLLDQNKDNYLTVEDGKW 114

Query: 61  KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNII--EGECLSM 118
           K RR F G+K +WGFD++I L+ F ++SNGY VDD CVFGAEVFV + N    +GECLSM
Sbjct: 115 KPRR-FRGMKKQWGFDKYISLKEFKESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSM 173

Query: 119 AKITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFE 178
            K     K VW ++NFSKLD    ES++F AG+ KWKI +YP G+G G+G HLS +L   
Sbjct: 174 IKSPVTYKHVWKIDNFSKLDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELA 233

Query: 179 DSTL--EAIKVYARYTLRILDQVGAKHKSFQGKVS-------------------SLNEPE 217
           D      A K+YA  TLR+ DQ+ +KH S  GKVS                   +  +P 
Sbjct: 234 DPAALHPATKIYAEVTLRLQDQIYSKHHS--GKVSYWFSASNPEVGGPRFILLDNFKQPN 291

Query: 218 TGFLVNDVCLVEAEVAVLGISTAM 241
            GFLV D  +VEAEV+++G++ A 
Sbjct: 292 IGFLVKDAFIVEAEVSIIGVANAF 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522688|ref|XP_004168358.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 131/264 (49%), Positives = 166/264 (62%), Gaps = 26/264 (9%)

Query: 1   KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
           KLV++P G+KSKN  DHISLYL +A T SL   WEV  V RLFLLDQN+D+Y   +D   
Sbjct: 55  KLVLHPHGDKSKNGNDHISLYLEIAGTDSLQPSWEVFVVYRLFLLDQNKDNYLTVEDGKW 114

Query: 61  KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNII--EGECLSM 118
           K RR F G+K +WGFD++I L+ F ++SNGY VDD CVFGAEVFV + N    +GECLSM
Sbjct: 115 KPRR-FRGMKKQWGFDKYISLKEFKESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSM 173

Query: 119 AKITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFE 178
            K     K VW ++NFSKLD    ES++F AG+ KWKI +YP G+G G+G HLS +L   
Sbjct: 174 IKSPVTYKHVWKIDNFSKLDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELA 233

Query: 179 DSTL--EAIKVYARYTLRILDQVGAKHKSFQGKVS-------------------SLNEPE 217
           D      A K+YA  TLR+ DQ+ +KH S  GKVS                   +  +P 
Sbjct: 234 DPAALHPATKIYAEVTLRLQDQIYSKHHS--GKVSYWFSASNPEVGGPRFILLDNFKQPN 291

Query: 218 TGFLVNDVCLVEAEVAVLGISTAM 241
            GFLV D  +VEAEV V+G++ A 
Sbjct: 292 IGFLVKDAFIVEAEVNVIGVANAF 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556544|ref|XP_002519306.1| nucleic acid binding protein, putative [Ricinus communis] gi|223541621|gb|EEF43170.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 134/258 (51%), Positives = 161/258 (62%), Gaps = 24/258 (9%)

Query: 1   KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
           KLV+YPKGNKSKN  +H+SLY+A+AD+S+L  GWEV+ V RLFLLDQ +D+Y +     G
Sbjct: 199 KLVLYPKGNKSKNVMEHLSLYIAMADSSNLQLGWEVHVVFRLFLLDQIRDNYLILP---G 255

Query: 61  KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFV-KERNIIEGECLSMA 119
           KE R F+G +LEWGFDQ IPL    D  NGY V+DTCVFGAEVFV KE    +GECLSM 
Sbjct: 256 KECR-FHGFRLEWGFDQLIPLATLKDTKNGYLVEDTCVFGAEVFVRKESCTGKGECLSMI 314

Query: 120 KITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFED 179
           K +S  K +W  ENFSKLD    +S+ F AG+ +WKI LYP G G G G HLSLFLA  D
Sbjct: 315 KSSSTSKNLWRFENFSKLDAECNDSKTFVAGDQRWKIQLYPKGKGLGSGTHLSLFLALAD 374

Query: 180 ST--LEAIKVYARYTLRILDQVGAKH----KSFQGKVSS-------------LNEPETGF 220
            T      K+ A +TLRILDQ    H     +F    SS             L      +
Sbjct: 375 LTAITPGFKILADFTLRILDQSRGSHLFGKANFWFSASSSVCGWSRFYPLDQLYASSNAY 434

Query: 221 LVNDVCLVEAEVAVLGIS 238
           L  D CL EAE+ VLGI+
Sbjct: 435 LFKDTCLGEAEITVLGIT 452

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994555|dbj|BAB02742.1| unnamed protein product [Arabidopsis thaliana]

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 131/263 (49%), Positives = 173/263 (65%), Gaps = 28/263 (10%)

Query: 1   KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
           KLV+YP GNKSKN KDH+S+YL++AD+SSL+ GWEV AV RL+LLDQN+D+Y + Q   G
Sbjct: 48  KLVLYPNGNKSKNTKDHVSVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---G 104

Query: 61  KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFV-KERNIIEGECLSMA 119
            E RRF+ +K EWGFD+FIP   F+DASNGY ++DTC+FGA+VFV KER    GECLSM 
Sbjct: 105 NE-RRFHSVKREWGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMI 163

Query: 120 KITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFED 179
           K  +  K VW +ENFSKLD+   +S  F AG+ KWKI  YP G   G G HLS++L   D
Sbjct: 164 KDATSSKHVWKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVD 223

Query: 180 --STLEAIKVYARYTLRILDQVGAKHKSFQGKVSS-------------------LNEPET 218
             +  +  K++  +T+RI DQ+  +H    GKV+                      +P +
Sbjct: 224 PETISDGTKIFVEFTIRIFDQLQGRH--IAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNS 281

Query: 219 GFLVNDVCLVEAEVAVLGISTAM 241
           G L+ DVCLVEA+V V GI++A+
Sbjct: 282 GLLLKDVCLVEADVCVHGITSAI 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401489|ref|NP_566576.1| TRAF-like family protein [Arabidopsis thaliana] gi|332642426|gb|AEE75947.1| TRAF-like family protein [Arabidopsis thaliana]

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 131/263 (49%), Positives = 173/263 (65%), Gaps = 28/263 (10%)

Query: 1   KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
           KLV+YP GNKSKN KDH+S+YL++AD+SSL+ GWEV AV RL+LLDQN+D+Y + Q   G
Sbjct: 53  KLVLYPNGNKSKNTKDHVSVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---G 109

Query: 61  KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFV-KERNIIEGECLSMA 119
            E RRF+ +K EWGFD+FIP   F+DASNGY ++DTC+FGA+VFV KER    GECLSM 
Sbjct: 110 NE-RRFHSVKREWGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMI 168

Query: 120 KITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFED 179
           K  +  K VW +ENFSKLD+   +S  F AG+ KWKI  YP G   G G HLS++L   D
Sbjct: 169 KDATSSKHVWKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVD 228

Query: 180 --STLEAIKVYARYTLRILDQVGAKHKSFQGKVSS-------------------LNEPET 218
             +  +  K++  +T+RI DQ+  +H    GKV+                      +P +
Sbjct: 229 PETISDGTKIFVEFTIRIFDQLQGRH--IAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNS 286

Query: 219 GFLVNDVCLVEAEVAVLGISTAM 241
           G L+ DVCLVEA+V V GI++A+
Sbjct: 287 GLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519881|ref|XP_003528597.1| PREDICTED: uncharacterized protein LOC100779090 [Glycine max]

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 128/261 (49%), Positives = 158/261 (60%), Gaps = 21/261 (8%)

Query: 1   KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
           KLV+YP GNKSKN ++HISLYLA+ DTSSL  GWE+    R FL DQ  D+Y V  D V 
Sbjct: 50  KLVLYPSGNKSKNIREHISLYLALDDTSSLHHGWEIYVNFRFFLHDQTNDNYLVGPDTVR 109

Query: 61  KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFV-KERNIIEGECLSMA 119
            E RRF+ +K EWG DQFIPL  FN AS GY VDDTC FGAEVFV KER+  +GECL M 
Sbjct: 110 NE-RRFHKMKAEWGIDQFIPLRDFNLASKGYLVDDTCAFGAEVFVCKERSTGKGECLVMM 168

Query: 120 KITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFED 179
           K     K ++  +N SKLD    +S+ F AG  KWKI LYP G G   G++LSL+LA  D
Sbjct: 169 KEAILYKHLYEFDNLSKLDLECYDSKPFNAGNFKWKIKLYPKGKGAELGNYLSLYLALAD 228

Query: 180 STL--EAIKVYARYTLRILDQVGAKHKSFQGK-----------------VSSLNEPETGF 220
            +      K+YA+ TLRILDQ  AKH   +                   +++      G+
Sbjct: 229 PSALSPCSKIYAQITLRILDQKQAKHHFGKANYWFSASSHENGAAIFMPINNFTNQNFGY 288

Query: 221 LVNDVCLVEAEVAVLGISTAM 241
           +V D C VEAEV +LG+  A+
Sbjct: 289 VVKDSCFVEAEVIILGVVDAL 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479139|ref|XP_003609855.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355510910|gb|AES92052.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula]

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 120/261 (45%), Positives = 158/261 (60%), Gaps = 21/261 (8%)

Query: 1   KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
           KLV+YP GNKSKN KDHISLYLA+ ++SSL  GWE+    +LF+ DQN D+Y V QD V 
Sbjct: 51  KLVLYPSGNKSKNVKDHISLYLALEESSSLHPGWEIYVNFKLFVYDQNNDNYLVLQDDVK 110

Query: 61  KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNII-EGECLSMA 119
           KE +RF+ +K+EWGFDQFIPL+ FN  S GY +DD C FGAEVFV   N   +GE L M 
Sbjct: 111 KE-KRFHRMKVEWGFDQFIPLKDFNIGSKGYLLDDICAFGAEVFVCRENYTGKGESLIMM 169

Query: 120 KITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFED 179
           K     K VW +++FSKLD    +S+ F  G +KW+I LYP G     G +L+L+L   +
Sbjct: 170 KDALPYKHVWEIKDFSKLDSECCDSKPFNVGNYKWQIKLYPKGKATDLGRYLALYLTLAN 229

Query: 180 STL--EAIKVYARYTLRILDQVGAKHKSFQGKV-----------------SSLNEPETGF 220
            T      K+YA+  LRILDQ  +KH+ ++                    S+      G+
Sbjct: 230 PTTIPPGSKIYAQTILRILDQKQSKHQFWKANYWFSASSHEHGTSRFILCSNFTSQYLGY 289

Query: 221 LVNDVCLVEAEVAVLGISTAM 241
           LV D+C V+ EV VLG+  A+
Sbjct: 290 LVKDICFVDVEVTVLGVVDAL 310

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100507|ref|XP_002311903.1| predicted protein [Populus trichocarpa] gi|222851723|gb|EEE89270.1| predicted protein [Populus trichocarpa]

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/248 (50%), Positives = 155/248 (62%), Gaps = 33/248 (13%)

Query: 24  VADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQ------------DAVGKERRRFNGLKL 71
           + D SSL  GWEVN + RLFLLDQN+DSY                DA GKERR F+GLKL
Sbjct: 1   MVDASSLPRGWEVNVIFRLFLLDQNKDSYLKVMPLSDVLALLPRLDAAGKERR-FHGLKL 59

Query: 72  EWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFV-KERNIIEGECLSMAKITSGCKFVWM 130
           E GFDQFI L  FNDA  G+ ++DTCV GAEVFV  ER+  +GE LSM K  +  K+ W 
Sbjct: 60  ECGFDQFIKLSTFNDARYGFVLEDTCVLGAEVFVCGERSRGKGEVLSMKKDPTASKYTWK 119

Query: 131 VENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEA-IKVYA 189
           + +FSKLDE+RQESQ+F  G+H+WKIVLYP G G G G HLSL+LA + +TL A  +VYA
Sbjct: 120 IVDFSKLDEKRQESQIFSTGDHQWKIVLYPKGKGPGMGTHLSLYLALDLATLPAGCRVYA 179

Query: 190 RYTLRILDQV-------GAKHKSFQGKVSSLN-----------EPETGFLVNDVCLVEAE 231
            YTLR++DQ+         K KS+ G  SS N           +        D+C++EAE
Sbjct: 180 EYTLRLVDQLYDRKFDMYGKAKSWFGASSSENGWSRYGLLSLYQSNNYLFAKDICMIEAE 239

Query: 232 VAVLGIST 239
           V VLGI +
Sbjct: 240 VIVLGIGS 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2089045	309	AT3G17380 "AT3G17380" [Arabido	0.983	0.766	0.505	1.6e-61
TAIR|locus:2179744	351	AT5G26260 "AT5G26260" [Arabido	0.929	0.638	0.308	3.3e-30
TAIR|locus:2092329	363	AT3G20360 "AT3G20360" [Arabido	0.809	0.537	0.347	5.2e-28
TAIR|locus:2179699	350	AT5G26280 "AT5G26280" [Arabido	0.970	0.668	0.302	2.8e-27
TAIR|locus:2092344	379	AT3G20370 "AT3G20370" [Arabido	0.792	0.503	0.326	5.8e-27
TAIR|locus:2055998	420	AT2G04170 "AT2G04170" [Arabido	0.970	0.557	0.279	1.1e-25
TAIR|locus:2053674	365	AT2G15710 "AT2G15710" [Arabido	0.813	0.536	0.357	1.8e-25
TAIR|locus:2056008	411	AT2G04190 "AT2G04190" [Arabido	0.954	0.559	0.291	6.1e-24
TAIR|locus:2118465	297	AT4G09770 "AT4G09770" [Arabido	0.800	0.649	0.299	7.9e-24
TAIR|locus:2151049	333	AT5G26290 "AT5G26290" [Arabido	0.933	0.675	0.284	7.8e-23

TAIR|locus:2089045 AT3G17380 "AT3G17380" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 132/261 (50%), Positives = 173/261 (66%)

Query:     1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
             KLV+YP GNKSKN KDH+S+YL++AD+SSL+ GWEV AV RL+LLDQN+D+Y + Q   G
Sbjct:    53 KLVLYPNGNKSKNTKDHVSVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---G 109

Query:    61 KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFV-KERNIIEGECLSMA 119
              ERR F+ +K EWGFD+FIP   F+DASNGY ++DTC+FGA+VFV KER    GECLSM 
Sbjct:   110 NERR-FHSVKREWGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMI 168

Query:   120 KITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFED 179
             K  +  K VW +ENFSKLD+   +S  F AG+ KWKI  YP G   G G HLS++L   D
Sbjct:   169 KDATSSKHVWKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVD 228

Query:   180 -STL-EAIKVYARYTLRILDQVGAKH------KSFQGKVSS-----------LNEPETGF 220
               T+ +  K++  +T+RI DQ+  +H      K F    S              +P +G 
Sbjct:   229 PETISDGTKIFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGL 288

Query:   221 LVNDVCLVEAEVAVLGISTAM 241
             L+ DVCLVEA+V V GI++A+
Sbjct:   289 LLKDVCLVEADVCVHGITSAI 309

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2179744 AT5G26260 "AT5G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 71/230 (30%), Positives = 109/230 (47%)

Query:     1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
             +LV+Y KGN      +HISLY  + +T +L  GWEVN   +LF+ ++    Y    D   
Sbjct:    93 RLVLYVKGNPKGGINNHISLYARIEETETLPRGWEVNVDLKLFVHNRKLKKYLSVTDGTV 152

Query:    61 KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAK 120
             K   R+N  K EWGF Q I L  F +A+ GY V DT  FGAE+F+      + +   ++ 
Sbjct:   153 K---RYNDAKKEWGFTQLISLPTFYNANEGYLVQDTASFGAEIFIVNPTEKQEKVTFISN 209

Query:   121 ITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDS 180
                   F W +  FS L+++   S  F  G+  W++   P G+G G    L +FL  +  
Sbjct:   210 PPDNV-FTWKILRFSTLEDKFYYSDDFLVGDRYWRLGFNPKGSGGGRPHALPIFLYAQGH 268

Query:   181 TLEAI--KVYARYTLRILDQVGAKHKSFQGKVSSLNEPETGFLVNDVCLV 228
                A+    +    LR+ +Q  + HK            + G  VN++ L+
Sbjct:   269 KANAVVTNTWGAVNLRLKNQRSSNHKQLYSAAWYPIRSDYGVGVNNIILM 318

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2092329 AT3G20360 "AT3G20360" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
 Identities = 72/207 (34%), Positives = 108/207 (52%)

Query:     2 LVIYPKGNKSKNAKDHISLYLAVADTSSLTF-GWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
             LV+YPKGNK+ N   HISLY+ V D S+LT    EV+   R ++ ++ +  Y   QD   
Sbjct:   102 LVVYPKGNKNDNGTGHISLYV-VLDNSTLTSQSEEVHVDLRFYVFNKKETKYFTIQDT-- 158

Query:    61 KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVD-DTCVFGAEVFVKERNIIEGECLSMA 119
              +  RF+ +K  WGF + +PL  FN+  NGY  D D C FG +V +      + E  S+ 
Sbjct:   159 -DVWRFSAIKRMWGFSKVLPLITFNNLKNGYLYDVDHCEFGVDVIIPPF-YEKSEVFSVT 216

Query:   120 KITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAF-E 178
             K     +F W ++ +S L      S+ F  G   W + ++  G G  +G +LSL+L    
Sbjct:   217 KSFPSPRFTWYIQGYSTLPTDYL-SEEFIIGGKSWNLRIFKNGFGAFEGKNLSLYLNLGP 275

Query:   179 DSTLEAI---KVYARYTLRILDQVGAK 202
                L+A    KVY R  LR+ +Q G++
Sbjct:   276 QELLKAKPYDKVYVRAKLRVPNQFGSQ 302

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2179699 AT5G26280 "AT5G26280" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 78/258 (30%), Positives = 120/258 (46%)

Query:     1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
             +LV+Y  GNK+    DHISLY  + +T+SL  GWEVN   +LF+ +     Y    D + 
Sbjct:    92 RLVLYVNGNKNDGGNDHISLYARIEETNSLPLGWEVNVDLKLFVHNGKLHKYLTVTDGLV 151

Query:    61 KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAK 120
             K   R+N  K EWGF Q IP   F +A+ GY   DT  FGAE+F+  +   + E ++   
Sbjct:   152 K---RYNNAKKEWGFGQLIPRSTFYNANEGYLDQDTGSFGAEIFIV-KPAQQQEKVTFIS 207

Query:   121 ITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDS 180
                   F W +  FS L+++   S  F   +  W++   P G+G G    L +FL  +  
Sbjct:   208 NPPNNVFTWKILRFSTLEDKFYYSDDFLVEDRYWRLGFNPKGDGGGRPHALPIFLFAQGH 267

Query:   181 TLEAI--KVYARYTLRILDQVGAKHKSFQGK------------------VSSLNEPETGF 220
                A+    +    LR+ +Q    H+                       ++ LN+   G+
Sbjct:   268 KANAVATNTWGAVNLRLKNQRSTNHRQIYSAAWYPIGSGYGVGVNNIILLADLNDASKGY 327

Query:   221 LVNDVCLVEAEVAVLGIS 238
             LVND  + EAE+  + I+
Sbjct:   328 LVNDAIIFEAEMVKVSIT 345

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2092344 AT3G20370 "AT3G20370" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
 Identities = 66/202 (32%), Positives = 106/202 (52%)

Query:     2 LVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGK 61
             LV++P GNK  +   ++SLY+A+ D S+L    E+ A  R ++ ++N+  Y   QD    
Sbjct:   121 LVVFPNGNKKDSGSGYLSLYVAI-DNSTLG-QQEIYADLRFYIFNKNERKYFTIQDT--- 175

Query:    62 ERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVD-DTCVFGAEVFVKERNIIE-GECLSMA 119
             +  +F+  K  WGF Q +P++ F D + GY  D D C FG +V +   ++ E  E  S+ 
Sbjct:   176 DVWKFSVFKTMWGFSQVLPIDTFKDPTKGYLYDGDHCEFGVDVTMP--SLYEKSELFSVT 233

Query:   120 KITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFED 179
             +     +F W +  FS L +    S+VF  G   W I + P G G G+G  LS++L    
Sbjct:   234 ENFLNPRFTWTIRGFSTLLKNSYLSEVFSIGGRSWNIQINPSGLGTGEGKALSMYLGLNV 293

Query:   180 STL--EAIKVYARYTLRILDQV 199
             + +     K+Y R  LR L+Q+
Sbjct:   294 NEIFRPYEKIYVRAKLRALNQL 315

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2055998 AT2G04170 "AT2G04170" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 72/258 (27%), Positives = 123/258 (47%)

Query:     1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
             +LV+Y  GN++    +HISLY+ + +T SL  GWEVN   +LF+ +  Q  Y + +D + 
Sbjct:   162 RLVLYVNGNQNDGGNNHISLYVRIEETESLPKGWEVNVELKLFVYNGKQRKYLIVKDGIV 221

Query:    61 KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAK 120
             K   R+N  K EWG+ + IPL  F D + GY   D   FGAE+F      ++ +   ++ 
Sbjct:   222 K---RYNDAKKEWGYGKLIPLTTFLDTNEGYLEQDIASFGAEIFSGTAVQVQEKVTFISN 278

Query:   121 ITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDS 180
               +   F W + +FS L+++   S  F   +  W++   P G G G    + +FL  +  
Sbjct:   279 PPNNV-FTWKILHFSNLEDKFYYSDDFLVEDRYWRLGFNPKGTGDGRSQAIPIFLYAQGH 337

Query:   181 TLEAI--KVYARYTLRILDQVGAKH-----------KSFQG-------KVSSLNEPETGF 220
                A+    +    LR+ +Q  + H           +S  G        ++  N+   G+
Sbjct:   338 KPNAVATNTWGAVNLRLKNQRSSNHAQIYSAAWYPTRSDYGVGVNTIISLAEFNDASKGY 397

Query:   221 LVNDVCLVEAEVAVLGIS 238
              VND  + EAE+  + ++
Sbjct:   398 SVNDSIIFEAEMVKVSVT 415

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2053674 AT2G15710 "AT2G15710" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 73/204 (35%), Positives = 103/204 (50%)

Query:     1 KLVIYPKGNKSKNAKDHISLYLAVADTS-SLTFGWEVNAVSRLFLLDQNQDSYSVAQDAV 59
             +LVIYPKGN+       IS+Y+   +T  S T   EV A    F+ ++ ++ Y   QD  
Sbjct:   129 RLVIYPKGNEKDKGSGFISMYVEFDNTKVSSTSPMEVFAYIIFFVYNKKENKYFTIQDV- 187

Query:    60 GKERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVD-DTCVFGAEVFVKERNIIEGECLSM 118
               E +RFN L+  WG  Q + LE FND  NGY  + + C FG +V V    I + E +S 
Sbjct:   188 --EVKRFNALRTVWGLSQVLSLETFNDLENGYTFEGEQCEFGVDVMVASP-ITKWEVVSF 244

Query:   119 AKITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFE 178
              +     KF W V++FS L E    S+ F  G   W + +YP G+   D   LS+FL   
Sbjct:   245 DEKLDILKFSWSVKDFSVLKEEFYVSERFSMGGRLWDLQMYPKGDPRRDKKWLSIFLRLS 304

Query:   179 DSTLEAI--KVYARYTLRILDQVG 200
              S    +  K+Y    LR+LD +G
Sbjct:   305 GSETLTVDEKIYVIAHLRVLDPLG 328

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2056008 AT2G04190 "AT2G04190" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 6.1e-24, P = 6.1e-24
 Identities = 69/237 (29%), Positives = 110/237 (46%)

Query:     1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
             +L++Y  GN++    +HISLYL   +T  LT+   +N V +LF+ +  QD Y    D + 
Sbjct:   153 RLILYVNGNQNDGGSNHISLYLRSEETDHLTYDGSINFVLKLFVYNGKQDKYLTVTDGIQ 212

Query:    61 KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAK 120
             K   R+N    EWG+ + IPL  F D S GY   DT  FGAE+F+     ++ +   ++ 
Sbjct:   213 K---RYNYKNKEWGYGKLIPLSTFLDTSQGYLEQDTASFGAEIFLCPPIQVQEKVTFISN 269

Query:   121 ITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDS 180
               +   F W + +FS L++    S  F   +  W++ + P G G G    + +FL  +  
Sbjct:   270 PPNNV-FTWKILHFSTLEDIVYYSDDFLVEDRYWRLGVNPKGTGDGRSQAIKIFLYAQGH 328

Query:   181 TLEAI--KVYARYTLRILDQVGAKHKSFQGKVSSLNEPETGFLVNDVC-LVEAEVAV 234
                A+    +    LR+ +Q  + H             + G  VN V  L E   AV
Sbjct:   329 KPNAVVSSTWGAVNLRVKNQRSSNHSQIYSAALYPIRNDYGVGVNTVLSLAELNDAV 385

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2118465 AT4G09770 "AT4G09770" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
 Identities = 62/207 (29%), Positives = 104/207 (50%)

Query:     1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
             +L+ YP G   +  KDH+S+Y  + +  +     +++A  + F+ + N   YSV QD   
Sbjct:    42 RLIFYPAGKLEEGGKDHVSIYARIENVGA---SMQIDAELKFFIYNHNNKQYSVFQDGTM 98

Query:    61 KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAK 120
             K    +N  K E GF Q +    FND  NGY   + C+ G E+FV  + I + E +   +
Sbjct:    99 KH---YNKEKKECGFAQMLLFSKFNDPKNGYIDGNACIVGVEIFVI-KPIEKVERVVFTQ 154

Query:   121 ITSGCKFVWMVENFSKL-DERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLF---LA 176
                  KF W + +FS + D+R   S  F  G+ KW++ + P G+       LS++   +A
Sbjct:   155 NPPENKFTWKISHFSYIGDKRYYYSDEFVVGDRKWRLKISPKGDKKVRA--LSVYVQAMA 212

Query:   177 FEDSTLEAIKVYARYTLRILDQVGAKH 203
             +  + + A   YA+  LR+L+Q  + H
Sbjct:   213 YLPNAV-ASSTYAKLRLRLLNQKNSNH 238

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151049 AT5G26290 "AT5G26290" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 73/257 (28%), Positives = 122/257 (47%)

Query:     1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
             +LV+Y  GN+    KDH+SLY  + +T SL  GWEVN   +LF+ +   + Y +    V 
Sbjct:    85 RLVLYVNGNEKDGGKDHVSLYAKIVETESLPVGWEVNVDLKLFVYNGKLNKYLIV--TV- 141

Query:    61 KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIEGECLSMAK 120
                +R+N    E G+ Q IP   F D ++GY   DT  FGAE+++  +   + E ++   
Sbjct:   142 ---KRYNNATKELGYGQLIPQSTFYDGNDGYREQDTGTFGAEIYIV-KPAQQKEKVTFIS 197

Query:   121 ITSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDS 180
                   F W + +FS L+++  +S  F  G+  WK+ L P G G      + +FL  +  
Sbjct:   198 NPPDNVFTWKILHFSTLEDKVYQSNEFLVGDRYWKLGLNPKG-GL-----VPIFLYAQGF 251

Query:   181 TLEAI--KVYARYTLRILDQVGAKH-----------KSFQG------KVSSLNEPETGFL 221
                A+    YA   LR+ +Q  + H            S  G       +S + +   G++
Sbjct:   252 KANAVVTTTYAATNLRLKNQRSSNHVTTYTAYWYLIPSGLGLGVNTIPLSDVKDASKGYV 311

Query:   222 VNDVCLVEAEVAVLGIS 238
             VND  ++E E+  + ++
Sbjct:   312 VNDSIIIEVEMLTVSVT 328

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.3__1915__AT3G17380.1 annotation not avaliable (309 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	2e-20
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	6e-15
smart00061	95	smart00061, MATH, meprin and TRAF homology	4e-07
pfam00917	116	pfam00917, MATH, MATH domain	2e-06
cd03775	134	cd03775, MATH_Ubp21p, Ubiquitin-specific protease	2e-05
pfam00917	116	pfam00917, MATH, MATH domain	4e-05
cd03778	164	cd03778, MATH_TRAF2, Tumor Necrosis Factor Recepto	7e-05
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	7e-05
cd00270	149	cd00270, MATH_TRAF_C, Tumor Necrosis Factor Recept	0.002
cd03775	134	cd03775, MATH_Ubp21p, Ubiquitin-specific protease	0.004

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score = 83.2 bits (206), Expect = 2e-20
 Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 19/125 (15%)

Query: 126 KFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFL--AFEDSTLE 183
           K  W + NFS+L+     S  F  G +KW+I +YP G+G   GD+LSL+L     +S LE
Sbjct: 2   KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDG-ESGDYLSLYLELDKGESDLE 60

Query: 184 AIKVYARYTLRILDQVGAKHKSFQGKVSSLNEPETG----------------FLVNDVCL 227
              V A +TL++++Q G K  S        +E  +G                +LV+D   
Sbjct: 61  KWSVRAEFTLKLVNQNGGKSLSKSFTHVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLT 120

Query: 228 VEAEV 232
           +E EV
Sbjct: 121 IEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score = 68.9 bits (169), Expect = 6e-15
 Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 1   KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
           ++ IYP G+      D++SLYL +    S    W V A   L L++QN            
Sbjct: 31  RIRIYPNGDGES--GDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKSLSKS---- 84

Query: 61  KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEV 103
                F+     WGF +FI  +   D  + Y VDD+     EV
Sbjct: 85  FTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 127 FVWMVENFSKL-DERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAI 185
                +N S+L +     S         W++ +Y           LSL+L  E    ++ 
Sbjct: 2   LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYR------KNGFLSLYLHCEKEECDSR 55

Query: 186 K--VYARYTLRILDQVGAKHKSFQGKV 210
           K  + A +TL+++ Q G         V
Sbjct: 56  KWSIEAEFTLKLVSQNGKSLSKKDKHV 82

Length = 95

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 17/106 (16%)

Query: 1   KLVIYPKGNKSKNAKDHISLYLAVADTSSLTF-GWEVNAVSRLFLLDQNQDSYSVAQDAV 59
           +L IY  G         + LYL           GW +     L L+  N  S        
Sbjct: 27  RLRIYRNG-------GFLGLYLHCEKGEKDELLGWSIETEFTLKLVSDNGKS-----LTK 74

Query: 60  GKERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFV 105
             +   F      +G+ +FI  +      N Y VDDT +  AEV +
Sbjct: 75  RNKSHVFTKPT-GYGWGKFISWDDLE---NDYVVDDTIIIEAEVKI 116

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 127 FVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLA 176
           F W ++N+S+L E++  S  F  G  +W+I+L+P GN    G  +S++L 
Sbjct: 3   FTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQTGG--VSIYLE 49

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding. Length = 134

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 24/120 (20%)

Query: 131 VENFSKLDERRQESQ--VFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAI--- 185
           ++NFSK+ E                W++ +Y       +G  L L+L  E    + +   
Sbjct: 1   IKNFSKIKEGENYYTSPYEERFGIPWRLRIYR------NGGFLGLYLHCEKGEKDELLGW 54

Query: 186 KVYARYTLRILDQVGA------KHKSFQ-------GKVSSLNEPETGFLVNDVCLVEAEV 232
            +   +TL+++   G       K   F        GK  S ++ E  ++V+D  ++EAEV
Sbjct: 55  SIETEFTLKLVSDNGKSLTKRNKSHVFTKPTGYGWGKFISWDDLENDYVVDDTIIIEAEV 114

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|239747 cd03778, MATH_TRAF2, Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 29/130 (22%)

Query: 111 IEGECLSMAKITSGCKFVWMVENFSKLDERRQE----------SQVFCAGEHKWKIVL-- 158
           +E + L     T    F+W + +F++   +RQE          S  F    + +K+ L  
Sbjct: 5   LEQKVLEXEASTYDGVFIWKISDFAR---KRQEAVAGRIPAIFSPAFYTSRYGYKMCLRI 61

Query: 159 YPMGNGCGDGDHLSLFLAFEDSTLEAIKVY---ARYTLRILDQVGAKH-----------K 204
           Y  G+G G G HLSLF        +A+  +    + TL +LDQ   +H            
Sbjct: 62  YLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSS 121

Query: 205 SFQGKVSSLN 214
           SFQ  V+ +N
Sbjct: 122 SFQRPVNDMN 131

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal alpha helical region (TRAF-N), and a highly conserved C-terminal MATH subdomain (TRAF-C) with an eight-stranded beta-sandwich structure. TRAF-N mediates trimerization while TRAF-C interacts with receptors. Length = 164

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 6/58 (10%)

Query: 127 FVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMG-NGCGDGDHLSLFLAFEDSTLE 183
           F W V+ +S+L  ++ ES  F  G H WKI+L+P G N C     +S++L +E   LE
Sbjct: 41  FTWKVKRWSELA-KKVESPPFSVGGHTWKIILFPQGNNQCN----VSVYLEYEPQELE 93

Length = 1089

>gnl|CDD|238168 cd00270, MATH_TRAF_C, Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 20/89 (22%)

Query: 126 KFVWMVENFS-KLDERRQE------SQVFCAGEHKWK--IVLYPMGNGCGDGDHLSLFLA 176
             +W ++++S KL E          S  F    + +K  + LY  G+G G G HLSLF+ 
Sbjct: 2   VLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVH 61

Query: 177 F---E-DSTLE---AIKVYARYTLRILDQ 198
               E D+ LE     K+    TL +LDQ
Sbjct: 62  VMKGEYDALLEWPFRGKI----TLTLLDQ 86

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-terminal alpha helical region (TRAF-N), and a highly conserved C-terminal MATH subdomain (TRAF-C) with an eight-stranded beta-sandwich structure. TRAF-N mediates trimerization while TRAF-C interacts with receptors. Length = 149

>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 11/97 (11%)

Query: 1   KLVIYPKGNKSKNAKDHISLYLA----VADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQ 56
           +++++P+GN   +    +S+YL       + + L   W V A   L + +    S  ++ 
Sbjct: 30  RILLFPQGN---SQTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDPSIQLSN 86

Query: 57  DAVGKERRRFNGLKLEWGFDQFIPLEAFNDASNGYPV 93
            A      RFN    +WGF +FI L      +   P 
Sbjct: 87  VA----HHRFNAEDKDWGFTRFIELRKLAHRTPDKPS 119

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding. Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.92
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.89
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.89
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.87
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.87
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.87
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.86
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.86
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.86
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.85
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.85
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.82
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.82
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.81
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.8
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.8
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.75
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.72
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.72
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.71
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.7
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.7
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.7
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.66
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.65
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.65
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.62
smart00061	95	MATH meprin and TRAF homology.	99.6
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.52
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.5
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.44
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.3
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.3
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.26
smart00061	95	MATH meprin and TRAF homology.	99.14
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	98.96
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	98.91
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	97.94
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	97.73
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	97.0
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.83

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.92  E-value=6.1e-24  Score=161.01  Aligned_cols=112  Identities=23%  Similarity=0.325  Sum_probs=92.5

Q ss_pred             CcEEEEEEccccccCCceEeeCcEEECCeEEEEEEEcCCCCC--CCCCeEEEEEEecCCCC-CCceEEEEEEEEEEcCCC
Q 036526          124 GCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGC--GDGDHLSLFLAFEDSTL-EAIKVYARYTLRILDQVG  200 (241)
Q Consensus       124 ~~~~~~~I~nfs~~~~~~~~S~~f~~gg~~W~i~~yp~g~~~--~~~~~ls~~L~~~~~~~-~~~~~~~~f~~~l~~~~~  200 (241)
                      .++|+|+|.|||.+ ++.++|+.|.+||++|+|++||+|+..  +..+++|+||.|.+... +.|++.|+|+|+|+||.+
T Consensus         2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~~~~~   80 (137)
T cd03772           2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRIINYKD   80 (137)
T ss_pred             CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEEcCCC
Confidence            57899999999999 578999999999999999999999654  23589999999987433 389999999999999985


Q ss_pred             C-cce------eeE--------eeeeeccC---CCCCeEeCCEEEEEEEEEEEe
Q 036526          201 A-KHK------SFQ--------GKVSSLNE---PETGFLVNDVCLVEAEVAVLG  236 (241)
Q Consensus       201 ~-~~~------~f~--------~~~~~~~~---~~~~yl~~d~l~i~~~V~v~~  236 (241)
                      . .+.      .|.        .+||+|++   +.+|||+||+|+|+|+|+|-.
T Consensus        81 ~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~  134 (137)
T cd03772          81 DEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA  134 (137)
T ss_pred             CcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence            3 211      242        25788884   468999999999999998854

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.89  E-value=2.7e-22  Score=152.32  Aligned_cols=112  Identities=27%  Similarity=0.419  Sum_probs=91.6

Q ss_pred             cCcEEEEEEccccccC---CceEeeCcEEECCe---EEEEEEEcCCCCCCCCCeEEEEEEecCCCCCCceEEEEEEEEEE
Q 036526          123 SGCKFVWMVENFSKLD---ERRQESQVFCAGEH---KWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAIKVYARYTLRIL  196 (241)
Q Consensus       123 ~~~~~~~~I~nfs~~~---~~~~~S~~f~~gg~---~W~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~~~~~f~~~l~  196 (241)
                      ...+|+|+|.|||.++   ++.+.|++|.+||+   +|+|++||+|+.++..+|+|+||++.+.  ..+++.|+|+|.|+
T Consensus         3 ~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~--~~~~v~a~f~~~l~   80 (139)
T cd03774           3 VKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC--PKSEVRAKFKFSIL   80 (139)
T ss_pred             eEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccC--CCCcEEEEEEEEEE
Confidence            3468999999999874   57899999999995   9999999999876667899999998752  14679999999999


Q ss_pred             cCCCCcce--------eeE-------eeeeeccC---CCCCeEeCCEEEEEEEEEEEe
Q 036526          197 DQVGAKHK--------SFQ-------GKVSSLNE---PETGFLVNDVCLVEAEVAVLG  236 (241)
Q Consensus       197 ~~~~~~~~--------~f~-------~~~~~~~~---~~~~yl~~d~l~i~~~V~v~~  236 (241)
                      ||.+....        .|.       .+||++++   +.+|||+||+|+|+|+|+|++
T Consensus        81 n~~~~~~~~~~~~~~~~f~~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~  138 (139)
T cd03774          81 NAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ  138 (139)
T ss_pred             ecCCCeeeeecccCcEeCCCCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence            99875431        231       14677773   457999999999999999975

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.89  E-value=2.6e-22  Score=151.46  Aligned_cols=105  Identities=26%  Similarity=0.465  Sum_probs=85.9

Q ss_pred             EEEEEEccccccCCceEeeCcEEECCeEEEEEEEcCCCCCCCCCeEEEEEEecC-CC-----CCCceEEEEEEEEEEcCC
Q 036526          126 KFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFED-ST-----LEAIKVYARYTLRILDQV  199 (241)
Q Consensus       126 ~~~~~I~nfs~~~~~~~~S~~f~~gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~-----~~~~~~~~~f~~~l~~~~  199 (241)
                      +|+|+|.|||.+. +.+.|++|.+|||+|+|.+||+|+..  .+++|+||.+.+ +.     .+.|.++|+|+|+|+||.
T Consensus         2 ~f~w~I~~fS~~~-~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~   78 (134)
T cd03775           2 SFTWRIKNWSELE-KKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG   78 (134)
T ss_pred             cEEEEECCcccCC-cceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence            5999999999975 78999999999999999999999765  689999999976 32     238999999999999997


Q ss_pred             CCcc-e------eeEe--------eeeeccC-------CCCCeEeCCEEEEEEEEE
Q 036526          200 GAKH-K------SFQG--------KVSSLNE-------PETGFLVNDVCLVEAEVA  233 (241)
Q Consensus       200 ~~~~-~------~f~~--------~~~~~~~-------~~~~yl~~d~l~i~~~V~  233 (241)
                      ++.. .      .|..        +||++++       .++|||+||+|+|++.|+
T Consensus        79 ~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          79 DPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             CCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            5431 1      3421        4677762       257999999999999874

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.87  E-value=5.5e-22  Score=152.00  Aligned_cols=109  Identities=25%  Similarity=0.312  Sum_probs=87.5

Q ss_pred             cEEEEEEccccccC-----Cc--eEeeCcEEE--CCeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC-C-CceEEEEEE
Q 036526          125 CKFVWMVENFSKLD-----ER--RQESQVFCA--GEHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL-E-AIKVYARYT  192 (241)
Q Consensus       125 ~~~~~~I~nfs~~~-----~~--~~~S~~f~~--gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~-~-~~~~~~~f~  192 (241)
                      |+|.|+|.|||.++     ++  .+.|+.|.+  |||+|+|++||+|...+..+|+|+||++.+ ... . +|++.|+|+
T Consensus         1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~   80 (147)
T cd03776           1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT   80 (147)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence            57999999999764     23  488999985  799999999999998777789999999987 322 2 899999999


Q ss_pred             EEEEcCCCCcc-e-----------eeE-------------eeeeeccC-CCCCeEeCCEEEEEEEEE
Q 036526          193 LRILDQVGAKH-K-----------SFQ-------------GKVSSLNE-PETGFLVNDVCLVEAEVA  233 (241)
Q Consensus       193 ~~l~~~~~~~~-~-----------~f~-------------~~~~~~~~-~~~~yl~~d~l~i~~~V~  233 (241)
                      |+|+||.++.. .           .|.             .+||+++. ++.+||+||+|+|+|+|+
T Consensus        81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~  147 (147)
T cd03776          81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN  147 (147)
T ss_pred             EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence            99999986321 0           132             24677773 446899999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.87  E-value=1.5e-21  Score=149.92  Aligned_cols=109  Identities=28%  Similarity=0.444  Sum_probs=88.4

Q ss_pred             cEEEEEEccccccC-------CceEeeCcEEEC--CeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC--CCceEEEEEE
Q 036526          125 CKFVWMVENFSKLD-------ERRQESQVFCAG--EHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL--EAIKVYARYT  192 (241)
Q Consensus       125 ~~~~~~I~nfs~~~-------~~~~~S~~f~~g--g~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~--~~~~~~~~f~  192 (241)
                      |+|+|+|.|||.++       ++.++|+.|.+|  ||+|+|++||+|...+..+|+|+||++.+ ...  .+|++.|+|+
T Consensus         1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~   80 (149)
T cd00270           1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT   80 (149)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence            58999999999984       258999999999  99999999999987666789999999977 322  3899999999


Q ss_pred             EEEEcCCCC---cce-----------eeE-------------eeeeeccC-CCCCeEeCCEEEEEEEEE
Q 036526          193 LRILDQVGA---KHK-----------SFQ-------------GKVSSLNE-PETGFLVNDVCLVEAEVA  233 (241)
Q Consensus       193 ~~l~~~~~~---~~~-----------~f~-------------~~~~~~~~-~~~~yl~~d~l~i~~~V~  233 (241)
                      |.|+||.++   .+.           .|.             .+|+++++ .+.|||+||+|+|+|+|.
T Consensus        81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v~  149 (149)
T cd00270          81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEVD  149 (149)
T ss_pred             EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEEC
Confidence            999999873   221           121             24677773 345899999999999983

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.87  E-value=3.3e-21  Score=152.04  Aligned_cols=113  Identities=21%  Similarity=0.347  Sum_probs=92.8

Q ss_pred             ccCcEEEEEEccccccC-----Cc--eEeeCcEEEC--CeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCCC--CceEEE
Q 036526          122 TSGCKFVWMVENFSKLD-----ER--RQESQVFCAG--EHKWKIVLYPMGNGCGDGDHLSLFLAFED-STLE--AIKVYA  189 (241)
Q Consensus       122 ~~~~~~~~~I~nfs~~~-----~~--~~~S~~f~~g--g~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~~--~~~~~~  189 (241)
                      ..+|+|.|+|.|||..+     ++  .++||+|.+|  ||+|+|++||+|+..+.++|+|+||++++ +.++  .|++.+
T Consensus        36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~  115 (186)
T cd03777          36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  115 (186)
T ss_pred             ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeE
Confidence            45799999999999975     23  7999999999  99999999999998777889999999987 3332  899999


Q ss_pred             EEEEEEEcCCC---------Cc---ceeeE------------eeeeecc-CCCCCeEeCCEEEEEEEEEE
Q 036526          190 RYTLRILDQVG---------AK---HKSFQ------------GKVSSLN-EPETGFLVNDVCLVEAEVAV  234 (241)
Q Consensus       190 ~f~~~l~~~~~---------~~---~~~f~------------~~~~~~~-~~~~~yl~~d~l~i~~~V~v  234 (241)
                      +++|.|+||.+         .+   ...|.            .+||+++ -..++||+||+++|+|.|..
T Consensus       116 ~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~~  185 (186)
T cd03777         116 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT  185 (186)
T ss_pred             EEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEec
Confidence            99999999976         21   11243            1467777 34578999999999999863

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.86  E-value=1.7e-21  Score=148.58  Aligned_cols=108  Identities=27%  Similarity=0.397  Sum_probs=89.2

Q ss_pred             cEEEEEEccccccC-----Cc--eEeeCcE--EECCeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC--CCceEEEEEE
Q 036526          125 CKFVWMVENFSKLD-----ER--RQESQVF--CAGEHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL--EAIKVYARYT  192 (241)
Q Consensus       125 ~~~~~~I~nfs~~~-----~~--~~~S~~f--~~gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~--~~~~~~~~f~  192 (241)
                      |++.|+|.|||.++     ++  .++|+.|  .++||+|+|++||+|...+.++|+|+||++++ +.+  ..|++.++++
T Consensus         1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t   80 (148)
T cd03780           1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT   80 (148)
T ss_pred             CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence            57999999999986     34  7999999  89999999999999998777889999999987 333  3899999999


Q ss_pred             EEEEcCCCCc-c-----------eeeEe------------eeeeccCCC---CCeEeCCEEEEEEEE
Q 036526          193 LRILDQVGAK-H-----------KSFQG------------KVSSLNEPE---TGFLVNDVCLVEAEV  232 (241)
Q Consensus       193 ~~l~~~~~~~-~-----------~~f~~------------~~~~~~~~~---~~yl~~d~l~i~~~V  232 (241)
                      |.|+||.+.. +           ..|.+            +||+++..+   .+||+||+++|+|.|
T Consensus        81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780          81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            9999998542 1           12421            467887443   399999999999987

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.86  E-value=3.5e-21  Score=144.95  Aligned_cols=110  Identities=24%  Similarity=0.377  Sum_probs=88.7

Q ss_pred             ccCcEEEEEEccccccC--CceEeeCcEEECCeEEEEEEEcCCCCCCCCCeEEEEEEecCCCCCCceEEEEEEEEEEcCC
Q 036526          122 TSGCKFVWMVENFSKLD--ERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAIKVYARYTLRILDQV  199 (241)
Q Consensus       122 ~~~~~~~~~I~nfs~~~--~~~~~S~~f~~gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~~~~~f~~~l~~~~  199 (241)
                      +..++++|+|.|||.+.  ++.++|+.|.+||++|+|.+||+|+..+..+|+|+||++.+.  ..|.+.++|+|+|+||.
T Consensus         2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~--~~~~~~~~~~l~llnq~   79 (132)
T cd03773           2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG--LGEASKYEYRVEMVHQA   79 (132)
T ss_pred             CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC--CCCceeEEEEEEEEcCC
Confidence            45678999999999985  578999999999999999999999887667899999998762  24678899999999995


Q ss_pred             C-Ccce------eeE-------eeeeeccC-CCCCeEeC--CEEEEEEEEE
Q 036526          200 G-AKHK------SFQ-------GKVSSLNE-PETGFLVN--DVCLVEAEVA  233 (241)
Q Consensus       200 ~-~~~~------~f~-------~~~~~~~~-~~~~yl~~--d~l~i~~~V~  233 (241)
                      + ..+.      .|.       .+|+++++ .++|||+|  |+|+|+|.|+
T Consensus        80 ~~~~~~~~~~~~~f~~~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          80 NPTKNIKREFASDFEVGECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR  130 (132)
T ss_pred             CCccceEEeccccccCCCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence            3 3222      232       24677763 45799999  9999999986

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.86  E-value=5.7e-21  Score=145.04  Aligned_cols=108  Identities=25%  Similarity=0.377  Sum_probs=88.3

Q ss_pred             cEEEEEEccccccC-----C--ceEeeCcEEEC--CeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC--CCceEEEEEE
Q 036526          125 CKFVWMVENFSKLD-----E--RRQESQVFCAG--EHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL--EAIKVYARYT  192 (241)
Q Consensus       125 ~~~~~~I~nfs~~~-----~--~~~~S~~f~~g--g~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~--~~~~~~~~f~  192 (241)
                      |++.|+|.||++..     +  ..++||.|..+  ||+|+|++||+|...+.++|+|+||++++ +.+  ..|++.++++
T Consensus         1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t   80 (147)
T cd03779           1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT   80 (147)
T ss_pred             CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence            57999999999764     2  36999999864  99999999999998777889999999987 322  2899999999


Q ss_pred             EEEEcCCCCcce-----------eeE------------eeeeeccCCCC---CeEeCCEEEEEEEE
Q 036526          193 LRILDQVGAKHK-----------SFQ------------GKVSSLNEPET---GFLVNDVCLVEAEV  232 (241)
Q Consensus       193 ~~l~~~~~~~~~-----------~f~------------~~~~~~~~~~~---~yl~~d~l~i~~~V  232 (241)
                      |.|+||.+.++.           .|.            .+||+++..++   +||+||+++|+|+|
T Consensus        81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V  146 (147)
T cd03779          81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV  146 (147)
T ss_pred             EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence            999999875431           243            14688885443   99999999999998

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.85  E-value=1.2e-20  Score=145.53  Aligned_cols=109  Identities=24%  Similarity=0.403  Sum_probs=89.4

Q ss_pred             cEEEEEEccccccC-------CceEeeCcEEEC--CeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCCC--CceEEEEEE
Q 036526          125 CKFVWMVENFSKLD-------ERRQESQVFCAG--EHKWKIVLYPMGNGCGDGDHLSLFLAFED-STLE--AIKVYARYT  192 (241)
Q Consensus       125 ~~~~~~I~nfs~~~-------~~~~~S~~f~~g--g~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~~--~~~~~~~f~  192 (241)
                      |+|.|+|.|||.++       +..+.|+.|.+|  ||.|+|++||+|..++..+|+|+||++++ +...  .|++.++++
T Consensus         1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~   80 (154)
T cd03781           1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT   80 (154)
T ss_pred             CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence            57999999999885       257999999999  99999999999988877889999999987 4332  899999999


Q ss_pred             EEEEcCCCC--c---ce--e---------eE----------------eeeeeccC-CCCCeEeCCEEEEEEEEE
Q 036526          193 LRILDQVGA--K---HK--S---------FQ----------------GKVSSLNE-PETGFLVNDVCLVEAEVA  233 (241)
Q Consensus       193 ~~l~~~~~~--~---~~--~---------f~----------------~~~~~~~~-~~~~yl~~d~l~i~~~V~  233 (241)
                      |+|+||.+.  .   +.  .         |.                .+||++++ .+++||+||+|+|+|+|.
T Consensus        81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v~  154 (154)
T cd03781          81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASVE  154 (154)
T ss_pred             EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEeC
Confidence            999999864  1   11  1         21                13677773 447899999999999983

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.85  E-value=2.3e-20  Score=141.34  Aligned_cols=100  Identities=20%  Similarity=0.419  Sum_probs=81.1

Q ss_pred             CEEEeecCCCCC-CCCCcEEEEEEEcCCCCCCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcCCccCcccccee
Q 036526            1 KLVIYPKGNKSK-NAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFI   79 (241)
Q Consensus         1 rl~~yP~G~~~~-~~~~~lS~~L~~~~~~~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi   79 (241)
                      ||++||+|+... +..+|||+||+|.+.. ...+|++.|+|+|+|+||.+...+....    ..+.|.....+|||++||
T Consensus        32 ~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~~~~~~~~~~~~~----~~~~f~~~~~~~G~~~fi  106 (137)
T cd03772          32 KIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRIINYKDDEPSFSRR----ISHLFFSKENDWGFSNFM  106 (137)
T ss_pred             EEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEEcCCCCcccEEEe----eeeEEcCCCCCccchhee
Confidence            689999996521 2458999999997643 3347999999999999998644333332    356787666799999999


Q ss_pred             eccccccCCCCeeecCeEEEEEEEEE
Q 036526           80 PLEAFNDASNGYPVDDTCVFGAEVFV  105 (241)
Q Consensus        80 ~~~~L~~~~~gyl~dD~l~i~~~V~v  105 (241)
                      +|++|+++++|||+||+|+|||+|+|
T Consensus       107 ~~~~L~~~~sgyl~~D~l~Ie~~V~~  132 (137)
T cd03772         107 TWSEVTDPEKGFIEDDTITLEVYVQA  132 (137)
T ss_pred             EHHHhcCCCCCcEECCEEEEEEEEEe
Confidence            99999888899999999999999998

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.82  E-value=1.9e-19  Score=138.26  Aligned_cols=111  Identities=25%  Similarity=0.410  Sum_probs=91.6

Q ss_pred             ccCcEEEEEEccccccC-----C--ceEeeCcEEE--CCeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCCC--CceEEE
Q 036526          122 TSGCKFVWMVENFSKLD-----E--RRQESQVFCA--GEHKWKIVLYPMGNGCGDGDHLSLFLAFED-STLE--AIKVYA  189 (241)
Q Consensus       122 ~~~~~~~~~I~nfs~~~-----~--~~~~S~~f~~--gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~~--~~~~~~  189 (241)
                      ...|+|+|+|.|||++.     +  ..++||.|..  +||+|++++||+|+..+.+.|||+||++++ +.++  +|++..
T Consensus        16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~   95 (164)
T cd03778          16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ   95 (164)
T ss_pred             ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence            55799999999999985     1  3789999975  589999999999998888889999999998 4443  999999


Q ss_pred             EEEEEEEcCCCCcce--e---------eE------------eeeeeccC--CCCCeEeCCEEEEEEEE
Q 036526          190 RYTLRILDQVGAKHK--S---------FQ------------GKVSSLNE--PETGFLVNDVCLVEAEV  232 (241)
Q Consensus       190 ~f~~~l~~~~~~~~~--~---------f~------------~~~~~~~~--~~~~yl~~d~l~i~~~V  232 (241)
                      +++|+|+||.+..|.  +         |.            ..|++++.  ...+||+||+|.|+|.|
T Consensus        96 ~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~V  163 (164)
T cd03778          96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIV  163 (164)
T ss_pred             EEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEE
Confidence            999999999875554  1         21            14688873  23699999999999987

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.82  E-value=1.9e-19  Score=139.20  Aligned_cols=75  Identities=24%  Similarity=0.284  Sum_probs=65.8

Q ss_pred             CcEEEEEEccccccC-----CceEeeCcE-EECCeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC-C-Cce-EEEEEEE
Q 036526          124 GCKFVWMVENFSKLD-----ERRQESQVF-CAGEHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL-E-AIK-VYARYTL  193 (241)
Q Consensus       124 ~~~~~~~I~nfs~~~-----~~~~~S~~f-~~gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~-~-~~~-~~~~f~~  193 (241)
                      +.+|+|+|.|||.++     +..++||+| .+|||+|+|++||+|... .++|+||||++++ +.. . +|+ +.++++|
T Consensus         1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~   79 (167)
T cd03771           1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATM   79 (167)
T ss_pred             CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEE
Confidence            468999999999995     258999998 999999999999999887 7889999999987 333 2 899 5899999


Q ss_pred             EEEcCC
Q 036526          194 RILDQV  199 (241)
Q Consensus       194 ~l~~~~  199 (241)
                      +|+||.
T Consensus        80 ~LlDQ~   85 (167)
T cd03771          80 TLLDQD   85 (167)
T ss_pred             EEECCC
Confidence            999997

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.81  E-value=1.4e-19  Score=136.47  Aligned_cols=97  Identities=23%  Similarity=0.455  Sum_probs=80.2

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCC----CCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcCCccCcccc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSS----LTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFD   76 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~----~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~~~~~wG~~   76 (241)
                      ||++||+|+.  . .+|+|+||++++.+.    .+.+|.+.|+|+|.|+||.++..+....    ..+.|+....+|||.
T Consensus        30 ~l~~yP~G~~--~-~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~~~~~~~~~~----~~~~F~~~~~~wG~~  102 (134)
T cd03775          30 RILLFPQGNS--Q-TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDPSIQLSNV----AHHRFNAEDKDWGFT  102 (134)
T ss_pred             EEEEeCCCCC--C-CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCCCCccceEcc----ceeEeCCCCCCCChh
Confidence            6899999986  2 789999999976543    2568999999999999998765443333    478998767899999


Q ss_pred             ceeeccccccC----CCCeeecCeEEEEEEEE
Q 036526           77 QFIPLEAFNDA----SNGYPVDDTCVFGAEVF  104 (241)
Q Consensus        77 ~fi~~~~L~~~----~~gyl~dD~l~i~~~V~  104 (241)
                      +||++++|++|    ++|||+||+|+|++.|.
T Consensus       103 ~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775         103 RFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             HcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            99999999965    57999999999999873

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.80  E-value=2.4e-19  Score=136.08  Aligned_cols=96  Identities=30%  Similarity=0.444  Sum_probs=78.0

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcCCccCccccceee
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIP   80 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~   80 (241)
                      ||++||+|+.. +..+|+|+||++++..    .++++|+|+|.|+||.+++......+   ..+.|.. ..+|||.+||+
T Consensus        41 ~l~~yP~G~~~-~~~~~iSlyL~l~~~~----~~~v~a~f~~~l~n~~~~~~~~~~~~---~~~~f~~-~~~wG~~~fi~  111 (139)
T cd03774          41 CLRVNPKGLDE-ESKDYLSLYLLLVSCP----KSEVRAKFKFSILNAKGEETKAMESQ---RAYRFVQ-GKDWGFKKFIR  111 (139)
T ss_pred             EEEEeCCCCCC-CCCCeEEEEEEEccCC----CCcEEEEEEEEEEecCCCeeeeeccc---CcEeCCC-CCccCHHHeee
Confidence            58999999863 4679999999997532    35799999999999998754322221   3466764 57899999999


Q ss_pred             ccccccCCCCeeecCeEEEEEEEEE
Q 036526           81 LEAFNDASNGYPVDDTCVFGAEVFV  105 (241)
Q Consensus        81 ~~~L~~~~~gyl~dD~l~i~~~V~v  105 (241)
                      +++|+++.+|||+||+++|+|+|+|
T Consensus       112 ~~~L~~~~~g~l~dD~l~I~c~I~V  136 (139)
T cd03774         112 RDFLLDEANGLLPDDKLTLFCEVSV  136 (139)
T ss_pred             HHHhhhhhcccccCCEEEEEEEEEE
Confidence            9999877789999999999999998

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.80  E-value=2.9e-18  Score=126.85  Aligned_cols=108  Identities=37%  Similarity=0.608  Sum_probs=87.3

Q ss_pred             cEEEEEEccccccCCceEeeCcEEECCeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC-CCceEEEEEEEEEEcCCCCc
Q 036526          125 CKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL-EAIKVYARYTLRILDQVGAK  202 (241)
Q Consensus       125 ~~~~~~I~nfs~~~~~~~~S~~f~~gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~-~~~~~~~~f~~~l~~~~~~~  202 (241)
                      ++|+|+|.+|+...++.++|+.|.++|+.|+|.+||+|... ..+++|+||+|.+ ... ..|.+.|+|+|+|++|++.+
T Consensus         1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   79 (126)
T cd00121           1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGK   79 (126)
T ss_pred             CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCc
Confidence            46999999999966689999999999999999999999765 4679999999987 322 37999999999999998433


Q ss_pred             ce------eeE---------eeeeeccCCCCCe-EeCCEEEEEEEEE
Q 036526          203 HK------SFQ---------GKVSSLNEPETGF-LVNDVCLVEAEVA  233 (241)
Q Consensus       203 ~~------~f~---------~~~~~~~~~~~~y-l~~d~l~i~~~V~  233 (241)
                      +.      .|.         .+||++++..+.+ ++||+|+|+|+|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~  126 (126)
T cd00121          80 SLSKSFTHVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK  126 (126)
T ss_pred             cceEeccCCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence            22      121         1478888544444 9999999999984

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.75  E-value=1e-17  Score=127.32  Aligned_cols=102  Identities=23%  Similarity=0.384  Sum_probs=75.4

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCC-CCCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEc----CCccCccc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTS-SLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFN----GLKLEWGF   75 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~-~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~----~~~~~wG~   75 (241)
                      +|.+||||... +.++|+|+||++++.+ +.-..|+++++++|.|+||.++........-....+.|.    ....+||+
T Consensus        40 ~i~~ypnG~~~-~~~~~iSv~l~l~~g~~D~~l~wpv~~~~tfsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~  118 (147)
T cd03779          40 CLRLYLNGDGA-GKGTHISLFFVIMKGEYDALLPWPFRHKVTFMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGC  118 (147)
T ss_pred             EEEEEcCCCCC-CCCCEEEEEEEEecCCcccccCcceEEEEEEEEECCCCCCCCcEeecCCcccccccCcccCCCCCcch
Confidence            58999999884 5688999999999753 223469999999999999987554211110000125575    33457999


Q ss_pred             cceeeccccccCCCCeeecCeEEEEEEE
Q 036526           76 DQFIPLEAFNDASNGYPVDDTCVFGAEV  103 (241)
Q Consensus        76 ~~fi~~~~L~~~~~gyl~dD~l~i~~~V  103 (241)
                      ++||++++|+.+..+||.||+++|+|+|
T Consensus       119 ~~Fi~~~~Le~s~~~ylkDD~~~Irc~V  146 (147)
T cd03779         119 PLFFPLKKLQSPKHAYCKDDTIYIKCVV  146 (147)
T ss_pred             hheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence            9999999998322399999999999998

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.72  E-value=2e-17  Score=126.67  Aligned_cols=100  Identities=19%  Similarity=0.283  Sum_probs=75.4

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCC-CCCCCEEEEEEEEEEEcCCCCceeEEe--ccCCceeeEEcC-----CccC
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSS-LTFGWEVNAVSRLFLLDQNQDSYSVAQ--DAVGKERRRFNG-----LKLE   72 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~-~~~~w~~~~~~~l~l~n~~~~~~~~~~--~~~~~~~~~F~~-----~~~~   72 (241)
                      +|++||+|... +..+|||+||++++... ...+|++.|+++|.|+||.++..+...  .+ ......|..     ...+
T Consensus        40 ~i~~yP~G~~~-~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~~~lldq~~~~~~~~~~~~~-~~~~~~F~~p~~~~~~~~  117 (147)
T cd03776          40 CARLNLSLPEA-RCPNYISLFVHLMQGENDSHLDWPFQGTITLTLLDQSEPRQNIHETMMS-KPELLAFQRPTTDRNPKG  117 (147)
T ss_pred             EEEEEeCCCCC-CCCCEEEEEEEEeccCCCcccCCcccceeEEEEECCCcccCccEEEEEc-CCChHhhcCCCcCCCCCC
Confidence            58999999873 56789999999987542 345799999999999999875432111  00 001245652     2367


Q ss_pred             ccccceeeccccccCCCCeeecCeEEEEEEEE
Q 036526           73 WGFDQFIPLEAFNDASNGYPVDDTCVFGAEVF  104 (241)
Q Consensus        73 wG~~~fi~~~~L~~~~~gyl~dD~l~i~~~V~  104 (241)
                      |||.+||++++|+  +++||+||+++|+|+|.
T Consensus       118 ~G~~~fi~~~~Le--~~~yl~dD~l~I~c~V~  147 (147)
T cd03776         118 FGYVEFAHIEDLL--QRGFVKNDTLLIKIEVN  147 (147)
T ss_pred             eeEceeeEHHHhh--hCCCccCCEEEEEEEEC
Confidence            9999999999998  57899999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.72  E-value=1.8e-17  Score=121.96  Aligned_cols=100  Identities=34%  Similarity=0.564  Sum_probs=79.2

Q ss_pred             EccccccC-C-ceEeeCcEEECCeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC--CCceEEEEEEEEEEcCCCCcce-
Q 036526          131 VENFSKLD-E-RRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL--EAIKVYARYTLRILDQVGAKHK-  204 (241)
Q Consensus       131 I~nfs~~~-~-~~~~S~~f~~gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~--~~~~~~~~f~~~l~~~~~~~~~-  204 (241)
                      |+|||.++ + ..+.|+.|.++|++|+|.+||+|+    .+++|+||+|.. +..  ..|++.|+++++++++.++... 
T Consensus         1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~   76 (119)
T PF00917_consen    1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISK   76 (119)
T ss_dssp             ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEE
T ss_pred             CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCccee
Confidence            78999997 3 344558889999999999999986    479999999998 333  3899999999999999887522 


Q ss_pred             -----eeE-------eeeeeccCCCC-CeEeCCEEEEEEEEEE
Q 036526          205 -----SFQ-------GKVSSLNEPET-GFLVNDVCLVEAEVAV  234 (241)
Q Consensus       205 -----~f~-------~~~~~~~~~~~-~yl~~d~l~i~~~V~v  234 (241)
                           .|.       .+|+++++..+ .|++||+|+|+|+|+|
T Consensus        77 ~~~~~~F~~~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   77 RIKSHSFNNPSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EEECEEECTTSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred             eeeeeEEeeecccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence                 232       25789984333 3899999999999986

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.71  E-value=5.3e-17  Score=123.84  Aligned_cols=102  Identities=24%  Similarity=0.362  Sum_probs=75.8

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCC-CCCCCCEEEEEEEEEEEcCCCCceeE-EeccCCceeeEEcCC----ccCcc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTS-SLTFGWEVNAVSRLFLLDQNQDSYSV-AQDAVGKERRRFNGL----KLEWG   74 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~-~~~~~w~~~~~~~l~l~n~~~~~~~~-~~~~~~~~~~~F~~~----~~~wG   74 (241)
                      +|++||||... +.++|||+||++++++ +.-..|+++++++|.|+||.+.+.+. .........+.|...    ..+||
T Consensus        40 ~i~~ypnG~~~-~~~~~iSv~l~l~~g~~D~~l~wp~~~~~tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G  118 (148)
T cd03780          40 CARAYLNGDGS-GKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASG  118 (148)
T ss_pred             EEEEEcCCCCC-CCCCEEEEEEEEecCccccccCcceEEEEEEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcC
Confidence            58999999873 5788999999999753 22346999999999999998654321 110000013557543    45799


Q ss_pred             ccceeeccccccCCCCeeecCeEEEEEEE
Q 036526           75 FDQFIPLEAFNDASNGYPVDDTCVFGAEV  103 (241)
Q Consensus        75 ~~~fi~~~~L~~~~~gyl~dD~l~i~~~V  103 (241)
                      +++||++++|+.++.+||.||+++|+|.|
T Consensus       119 ~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780         119 CPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             hhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            99999999998433599999999999987

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.70  E-value=9.4e-17  Score=123.83  Aligned_cols=100  Identities=24%  Similarity=0.423  Sum_probs=73.5

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCCC-CCCEEEEEEEEEEEcCCCC--ce--eEEec-cCCceeeEEcC------
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLT-FGWEVNAVSRLFLLDQNQD--SY--SVAQD-AVGKERRRFNG------   68 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~-~~w~~~~~~~l~l~n~~~~--~~--~~~~~-~~~~~~~~F~~------   68 (241)
                      +|++||||... +..+|+|+||++++.+... ..|+++++++|+|+||.+.  ..  +.... ........|..      
T Consensus        40 ~i~~yPnG~~~-~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~  118 (154)
T cd03781          40 QVSAFLNGNGS-GEGSHLSVYIRVLPGEYDNLLEWPFSHRITFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRL  118 (154)
T ss_pred             EEEEECCCCCC-CCCCEEEEEEEEecCCcccccCCceeeEEEEEEECCCCCccccCcceEEEEEcCCchhhhcCCccccc
Confidence            57999999874 5688999999999854322 4799999999999999864  11  11000 00001233442      


Q ss_pred             --CccCccccceeeccccccCCCCeeecCeEEEEEEE
Q 036526           69 --LKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEV  103 (241)
Q Consensus        69 --~~~~wG~~~fi~~~~L~~~~~gyl~dD~l~i~~~V  103 (241)
                        ...+||+.+||++++|+  +++||.||+++|+|+|
T Consensus       119 ~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~Irc~v  153 (154)
T cd03781         119 DESTLGFGYPKFISHEDLK--KRNYIKDDAIFLRASV  153 (154)
T ss_pred             CCCCCccchhHeeEHHHHh--hCCcccCCEEEEEEEe
Confidence              33579999999999998  6899999999999987

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.70  E-value=7.5e-17  Score=121.26  Aligned_cols=92  Identities=22%  Similarity=0.442  Sum_probs=73.4

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcCCccCccccceee
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIP   80 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~   80 (241)
                      ||++||+|+.. +.++|||+||.+.+.    ..|.+.++|+|+|+||.++..+....    ..+.|.. ..+|||.+||+
T Consensus        37 ~i~~yP~G~~~-~~~~~lSl~L~l~~~----~~~~~~~~~~l~llnq~~~~~~~~~~----~~~~f~~-~~~wG~~~Fi~  106 (132)
T cd03773          37 RLKVYPDGNGE-VRGNFLSVFLELCSG----LGEASKYEYRVEMVHQANPTKNIKRE----FASDFEV-GECWGYNRFFR  106 (132)
T ss_pred             EEEEECCCCCC-CCCCEEEEEEEeecC----CCCceeEEEEEEEEcCCCCccceEEe----ccccccC-CCCcCHHHhcc
Confidence            68999999873 467899999998763    23678899999999996544343333    3567764 46799999999


Q ss_pred             ccccccCCCCeeec--CeEEEEEEEE
Q 036526           81 LEAFNDASNGYPVD--DTCVFGAEVF  104 (241)
Q Consensus        81 ~~~L~~~~~gyl~d--D~l~i~~~V~  104 (241)
                      +++|+  ++|||+|  |+|+|+|.|+
T Consensus       107 ~~~L~--~~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773         107 LDLLI--NEGYLLPENDTLILRFSVR  130 (132)
T ss_pred             HHHHh--hCCCcCCCCCEEEEEEEEe
Confidence            99998  5899999  9999999985

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.70  E-value=9.8e-17  Score=123.15  Aligned_cols=100  Identities=28%  Similarity=0.510  Sum_probs=73.6

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCC-CCCCCEEEEEEEEEEEcCCCC--ceeEEec-cCCceeeEEc-----CCcc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSS-LTFGWEVNAVSRLFLLDQNQD--SYSVAQD-AVGKERRRFN-----GLKL   71 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~-~~~~w~~~~~~~l~l~n~~~~--~~~~~~~-~~~~~~~~F~-----~~~~   71 (241)
                      ||++||+|... +.++|||+||++++... ....|++.|+|+|.|+||.++  ..+.... ......+.|.     ....
T Consensus        40 ~i~~yP~G~~~-~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  118 (149)
T cd00270          40 CLRLYLNGDGT-GKGTHLSLFVHVMKGEYDALLEWPFRGKITLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNI  118 (149)
T ss_pred             EEEEEeCCCCC-CCCCEEEEEEEEeccCCCccccCCccceEEEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCC
Confidence            58999999863 46789999999987543 245799999999999999874  2221110 0000123443     1347


Q ss_pred             CccccceeeccccccCCCCeeecCeEEEEEEE
Q 036526           72 EWGFDQFIPLEAFNDASNGYPVDDTCVFGAEV  103 (241)
Q Consensus        72 ~wG~~~fi~~~~L~~~~~gyl~dD~l~i~~~V  103 (241)
                      +|||.+||++++|+  ++|||+||+|+|+|+|
T Consensus       119 ~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~v  148 (149)
T cd00270         119 GFGYPEFVPLEKLE--SRGYVKDDTLFIKVEV  148 (149)
T ss_pred             CcCcceEeEHHHhc--cCCCEeCCEEEEEEEE
Confidence            89999999999998  4689999999999998

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.66  E-value=4.9e-16  Score=114.25  Aligned_cols=92  Identities=34%  Similarity=0.595  Sum_probs=75.5

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCCC-CCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcCCccCcccccee
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLT-FGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFI   79 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~-~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi   79 (241)
                      ||.+||+|+     ++++|+||+|...+... .+|++.|++++.|+++.++......     ..+.|.. ..+|||.+||
T Consensus        27 ~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-----~~~~F~~-~~~~g~~~fi   95 (119)
T PF00917_consen   27 RLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISKRI-----KSHSFNN-PSSWGWSSFI   95 (119)
T ss_dssp             EEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEEEE-----ECEEECT-TSEEEEEEEE
T ss_pred             EEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcceeee-----eeeEEee-ecccchhhee
Confidence            588999987     58999999999875443 5799999999999999988744332     2478875 4889999999


Q ss_pred             eccccccCCCCeeecCeEEEEEEEEE
Q 036526           80 PLEAFNDASNGYPVDDTCVFGAEVFV  105 (241)
Q Consensus        80 ~~~~L~~~~~gyl~dD~l~i~~~V~v  105 (241)
                      +|++|+++.  |+.||+++|+|+|+|
T Consensus        96 ~~~~l~~~~--fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   96 SWEDLEDPY--FLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred             EHHHhCccC--CeECCEEEEEEEEEC
Confidence            999999533  899999999999987

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.65  E-value=1.2e-15  Score=112.71  Aligned_cols=95  Identities=32%  Similarity=0.467  Sum_probs=74.0

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEc-CCccCcccccee
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFN-GLKLEWGFDQFI   79 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~-~~~~~wG~~~fi   79 (241)
                      ||++||+|...  ..+|+|+||+|.+.......|.+.|+|+|.|+|+++++.....     ..+.|. ....+|||.+||
T Consensus        31 ~l~~~p~~~~~--~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~G~~~fi  103 (126)
T cd00121          31 RIRIYPNGDGE--SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKSLSKS-----FTHVFFSEKGSGWGFPKFI  103 (126)
T ss_pred             EEEEEcCCCCC--CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCccceEe-----ccCCcCCCCCCCCChHHee
Confidence            68999999873  5789999999987654456799999999999999844333222     233443 446899999999


Q ss_pred             eccccccCCCCeeecCeEEEEEEEE
Q 036526           80 PLEAFNDASNGYPVDDTCVFGAEVF  104 (241)
Q Consensus        80 ~~~~L~~~~~gyl~dD~l~i~~~V~  104 (241)
                      ++++|++  ..+++||+|+|+|+|.
T Consensus       104 ~~~~l~~--~~~~~~d~l~i~~~v~  126 (126)
T cd00121         104 SWDDLED--SYYLVDDSLTIEVEVK  126 (126)
T ss_pred             EHHHhcc--CCcEECCEEEEEEEEC
Confidence            9999994  3349999999999984

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.65  E-value=1e-15  Score=120.86  Aligned_cols=100  Identities=18%  Similarity=0.310  Sum_probs=74.7

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCC-CCCCCCEEEEEEEEEEEcCCCCceeEEe--ccCCceeeEEc-CC---ccCc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTS-SLTFGWEVNAVSRLFLLDQNQDSYSVAQ--DAVGKERRRFN-GL---KLEW   73 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~-~~~~~w~~~~~~~l~l~n~~~~~~~~~~--~~~~~~~~~F~-~~---~~~w   73 (241)
                      +|.+||||+.. +.++|+|+||.+++++ +.-..|++.++++|.|+||.+...+...  .+. .....|. +.   ..+|
T Consensus        78 ~i~~ypnG~g~-~~~~~iSvyl~L~~ge~D~~L~WP~~~~~tfsLlDQ~~~~~~~~~~~~p~-p~~~~F~rp~~~~n~~~  155 (186)
T cd03777          78 CARVYLNGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPD-PNSSSFKKPTGEMNIAS  155 (186)
T ss_pred             EEEEEcCCCCC-CCCCEEEEEEEEecCCcccccCCceeEEEEEEEEcCCCccccccceeccC-CccccccCCccCCCCCC
Confidence            58899999874 5688999999999754 2234699999999999999753222110  000 0124465 22   3579


Q ss_pred             cccceeeccccccCCCCeeecCeEEEEEEEE
Q 036526           74 GFDQFIPLEAFNDASNGYPVDDTCVFGAEVF  104 (241)
Q Consensus        74 G~~~fi~~~~L~~~~~gyl~dD~l~i~~~V~  104 (241)
                      |+++||++++|+  +++||.||+++|+|.|.
T Consensus       156 G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~  184 (186)
T cd03777         156 GCPVFVAQTVLE--NGTYIKDDTIFIKVIVD  184 (186)
T ss_pred             CchheeEHHHhc--cCCcEeCCEEEEEEEEe
Confidence            999999999998  68899999999999885

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.62  E-value=4.3e-15  Score=114.23  Aligned_cols=100  Identities=26%  Similarity=0.403  Sum_probs=75.3

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCCC-CCCEEEEEEEEEEEcCCCCceeEEec-cCCceeeEEc----CCccCcc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLT-FGWEVNAVSRLFLLDQNQDSYSVAQD-AVGKERRRFN----GLKLEWG   74 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~-~~w~~~~~~~l~l~n~~~~~~~~~~~-~~~~~~~~F~----~~~~~wG   74 (241)
                      +|++||||+.. +.+.|||+|+++++++.+. ..|++..+++|.|+||.+..+....- .+ .....|.    ....+||
T Consensus        58 ~l~~ylnG~g~-~~g~~LSly~~l~~Ge~D~~L~WPf~~~itl~llDQ~~r~hi~~~~~pd-~~~~~f~RP~~~~n~~~G  135 (164)
T cd03778          58 CLRIYLNGDGT-GRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPD-VTSSSFQRPVNDMNIASG  135 (164)
T ss_pred             EEEEEeCCCCC-CCCCEEEEEEEEecCCcCcccCCceeeEEEEEEECCCCCCcceeEEEcC-cchHhcCCCCcccccCcC
Confidence            58899999874 5678999999999987655 78999999999999998644322110 00 0111242    2245799


Q ss_pred             ccceeeccccccCCCCeeecCeEEEEEEE
Q 036526           75 FDQFIPLEAFNDASNGYPVDDTCVFGAEV  103 (241)
Q Consensus        75 ~~~fi~~~~L~~~~~gyl~dD~l~i~~~V  103 (241)
                      |+.|+++++|+.+ .|||+||++.|+|.|
T Consensus       136 ~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V  163 (164)
T cd03778         136 CPLFCPVSKXEAK-NSYVRDDAIFIKAIV  163 (164)
T ss_pred             cceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence            9999999999842 699999999999977

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>smart00061 MATH meprin and TRAF homology

Probab=99.60  E-value=8e-15  Score=103.32  Aligned_cols=71  Identities=23%  Similarity=0.312  Sum_probs=62.9

Q ss_pred             EEEEEccccccC-CceEeeCcEEECCeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCCC-CceEEEEEEEEEEcCCCCcc
Q 036526          127 FVWMVENFSKLD-ERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFED-STLE-AIKVYARYTLRILDQVGAKH  203 (241)
Q Consensus       127 ~~~~I~nfs~~~-~~~~~S~~f~~gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~~-~~~~~~~f~~~l~~~~~~~~  203 (241)
                      ++|+|.||+.+. ++.++|+.|.+||++|+|.+||+      .+|+|+||.|.+ ...+ .|++.|+|+|+|+||+++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~   75 (95)
T smart00061        2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL   75 (95)
T ss_pred             ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence            579999999985 67899999999999999999998      479999999987 3333 79999999999999998654

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.52  E-value=7.8e-14  Score=107.98  Aligned_cols=99  Identities=16%  Similarity=0.310  Sum_probs=69.9

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCC-CCCCCCE-EEEEEEEEEEcCCC---CceeEEe--ccCCc--e----eeEEc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTS-SLTFGWE-VNAVSRLFLLDQNQ---DSYSVAQ--DAVGK--E----RRRFN   67 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~-~~~~~w~-~~~~~~l~l~n~~~---~~~~~~~--~~~~~--~----~~~F~   67 (241)
                      +|++||||+. . .++|||+||++++.+ +....|+ +.|+++|+|+||..   .+.+...  .+++.  .    ...|.
T Consensus        38 ~I~~YPnG~~-~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~  115 (167)
T cd03771          38 QVGLYPNGTE-S-YPGYTGLYFHLCSGENDDVLEWPCPNRQATMTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWD  115 (167)
T ss_pred             EEEEEeCCCC-C-CCCcceEEEEEecCCccccccCcceeEEEEEEEECCCCcccccCcceEEEecCCccccccccccccc
Confidence            5899999997 3 678999999998754 3345799 58999999999962   1111111  00000  0    00122


Q ss_pred             C-----------------CccCccccceeeccccccCCCCeeecCeEEEEEEE
Q 036526           68 G-----------------LKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEV  103 (241)
Q Consensus        68 ~-----------------~~~~wG~~~fi~~~~L~~~~~gyl~dD~l~i~~~V  103 (241)
                      .                 ...+|||++||++++|+  +.+||+||+|.|++++
T Consensus       116 rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~--~r~ylk~dtl~i~~~~  166 (167)
T cd03771         116 RPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLR--RRDFLKGDDLIILLDF  166 (167)
T ss_pred             CCccccccccccccccccccCccccccceeHHHhc--cCCCCcCCEEEEEEEe
Confidence            1                 12489999999999999  5679999999999986

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.50  E-value=9.4e-14  Score=106.46  Aligned_cols=110  Identities=20%  Similarity=0.276  Sum_probs=84.1

Q ss_pred             CcEEEEEEccccccC-----CceEeeCcEEE-CCeEEEEEEEcCCCCC-CCCCeEEEEEEecC-CCCC--CceE-EEEEE
Q 036526          124 GCKFVWMVENFSKLD-----ERRQESQVFCA-GEHKWKIVLYPMGNGC-GDGDHLSLFLAFED-STLE--AIKV-YARYT  192 (241)
Q Consensus       124 ~~~~~~~I~nfs~~~-----~~~~~S~~f~~-gg~~W~i~~yp~g~~~-~~~~~ls~~L~~~~-~~~~--~~~~-~~~f~  192 (241)
                      +..+.|+|.||+++.     ...++||.|.. .||+.++++||+|+.. +.+.|+|||+++++ +.+.  +|++ .-+++
T Consensus         1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it   80 (167)
T cd03783           1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI   80 (167)
T ss_pred             CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence            356899999999975     25799999977 5999999999999863 56789999999998 4443  9995 56899


Q ss_pred             EEEEcCCC---C-cce-------------e------eE----------------------eeeeecc-CCCCCeEeCCEE
Q 036526          193 LRILDQVG---A-KHK-------------S------FQ----------------------GKVSSLN-EPETGFLVNDVC  226 (241)
Q Consensus       193 ~~l~~~~~---~-~~~-------------~------f~----------------------~~~~~~~-~~~~~yl~~d~l  226 (241)
                      |.|+||+.   . .|.             .      |.                      ..|++.+ ....+||+||+|
T Consensus        81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdDtl  160 (167)
T cd03783          81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKNDDL  160 (167)
T ss_pred             EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCCeE
Confidence            99999964   1 111             0      11                      1246666 345789999999


Q ss_pred             EEEEEEE
Q 036526          227 LVEAEVA  233 (241)
Q Consensus       227 ~i~~~V~  233 (241)
                      .|.++++
T Consensus       161 fI~~~~~  167 (167)
T cd03783         161 IIFVDFE  167 (167)
T ss_pred             EEEEecC
Confidence            9998763

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.44  E-value=5.8e-13  Score=101.62  Aligned_cols=76  Identities=20%  Similarity=0.299  Sum_probs=65.3

Q ss_pred             CcEEEEEEccccccC-----CceEeeCcEE-ECCeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCCC--CceEE-EEEEE
Q 036526          124 GCKFVWMVENFSKLD-----ERRQESQVFC-AGEHKWKIVLYPMGNGCGDGDHLSLFLAFED-STLE--AIKVY-ARYTL  193 (241)
Q Consensus       124 ~~~~~~~I~nfs~~~-----~~~~~S~~f~-~gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~~--~~~~~-~~f~~  193 (241)
                      +..+.|+|.||+++.     ...++||.|. ..||+.++.+||+|+..+ +.|||+|+++++ +.+.  +|++. -+++|
T Consensus         1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~   79 (167)
T cd03782           1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATM   79 (167)
T ss_pred             CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEE
Confidence            357999999999975     2679999996 479999999999998865 679999999998 4443  99999 89999


Q ss_pred             EEEcCCC
Q 036526          194 RILDQVG  200 (241)
Q Consensus       194 ~l~~~~~  200 (241)
                      .|+||+.
T Consensus        80 ~LlDQ~~   86 (167)
T cd03782          80 MLLDQHP   86 (167)
T ss_pred             EEEcCCC
Confidence            9999974

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.30  E-value=8e-12  Score=95.87  Aligned_cols=101  Identities=17%  Similarity=0.357  Sum_probs=71.5

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCC-CCCCCCEE-EEEEEEEEEcCCC---CceeEEe--ccCCc-e------eeEE
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTS-SLTFGWEV-NAVSRLFLLDQNQ---DSYSVAQ--DAVGK-E------RRRF   66 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~-~~~~~w~~-~~~~~l~l~n~~~---~~~~~~~--~~~~~-~------~~~F   66 (241)
                      +|.+||||+...+.+.|+|||++++.++ +.-..|++ .-+++|.|+||+.   .+.+...  +++.. .      ...|
T Consensus        38 ~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f  117 (167)
T cd03783          38 GVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAIITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRW  117 (167)
T ss_pred             EEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEEEEEcCCcchhhccccceeeecCCCcccccccccccc
Confidence            4789999986334678999999999876 33467995 5699999999963   2221100  00000 0      0113


Q ss_pred             cC--------------CccCccccceeeccccccCCCCeeecCeEEEEEEE
Q 036526           67 NG--------------LKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEV  103 (241)
Q Consensus        67 ~~--------------~~~~wG~~~fi~~~~L~~~~~gyl~dD~l~i~~~V  103 (241)
                      ..              ...++||+.||++++|+  +.+||.||++.|.+++
T Consensus       118 ~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~--~r~yikdDtlfI~~~~  166 (167)
T cd03783         118 DRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLR--RRSFLKNDDLIIFVDF  166 (167)
T ss_pred             cCCcccccccccccccCCcccccccceeHHHHh--hCCcccCCeEEEEEec
Confidence            32              23589999999999999  6899999999999876

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=4e-12  Score=115.41  Aligned_cols=112  Identities=29%  Similarity=0.519  Sum_probs=87.6

Q ss_pred             ccCcEEEEEEccccccCCceEeeCcEEECCeEEEEEEEcCCCCCCCCCeEEEEEEecCCC-----CCCceEEEEEEEEEE
Q 036526          122 TSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDST-----LEAIKVYARYTLRIL  196 (241)
Q Consensus       122 ~~~~~~~~~I~nfs~~~~~~~~S~~f~~gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~~~-----~~~~~~~~~f~~~l~  196 (241)
                      .....|+|+|+++|.+.. ++.||.|.+||+.|+|.++|.|+.+.   .+|+||+...+.     ...|.|+|+|.|.|.
T Consensus        36 ~~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq~---~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is  111 (1089)
T COG5077          36 LLEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQC---NVSVYLEYEPQELEETGGKYYDCCAQFAFDIS  111 (1089)
T ss_pred             HhhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCcc---ccEEEEEeccchhhhhcCcchhhhhheeeecC
Confidence            456689999999999984 78999999999999999999998763   299999988621     125999999999999


Q ss_pred             cCCCC-------cceeeEe--------eeeecc---CC---CCCeEeCCEEEEEEEEEEEee
Q 036526          197 DQVGA-------KHKSFQG--------KVSSLN---EP---ETGFLVNDVCLVEAEVAVLGI  237 (241)
Q Consensus       197 ~~~~~-------~~~~f~~--------~~~~~~---~~---~~~yl~~d~l~i~~~V~v~~~  237 (241)
                      ++..+       +|.+|..        +|+.+.   .+   ...|+.+|++.|+|.|+|++-
T Consensus       112 ~p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd  173 (1089)
T COG5077         112 NPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD  173 (1089)
T ss_pred             CCCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence            98763       3556643        233332   11   115899999999999999874

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.26  E-value=2.3e-11  Score=92.93  Aligned_cols=99  Identities=16%  Similarity=0.329  Sum_probs=71.8

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCC-CCCCCCEEE-EEEEEEEEcCCC---CceeEEe--ccCCc---e-eeEE--c
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTS-SLTFGWEVN-AVSRLFLLDQNQ---DSYSVAQ--DAVGK---E-RRRF--N   67 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~-~~~~~w~~~-~~~~l~l~n~~~---~~~~~~~--~~~~~---~-~~~F--~   67 (241)
                      ++.+||||+.. + ++|||+|++++.++ +.-..|++. -+++|.|+||+.   .+.+...  .+.+.   . ...|  .
T Consensus        38 ~l~~ylnG~g~-~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~  115 (167)
T cd03782          38 QVGLYLNGTDD-Y-PGNLAIYLHLTSGPNDDQLQWPCPWQQATMMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWD  115 (167)
T ss_pred             EEEEEecCCCC-C-CCEEEEEEEEeccCCCccccCCCcCCeEEEEEEcCCCchhhccceeeeEEecCCcccccCccceec
Confidence            58899999973 3 68999999999876 335679999 899999999963   2222211  11000   0 1123  2


Q ss_pred             CC-----------------ccCccccceeeccccccCCCCeeecCeEEEEEEE
Q 036526           68 GL-----------------KLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEV  103 (241)
Q Consensus        68 ~~-----------------~~~wG~~~fi~~~~L~~~~~gyl~dD~l~i~~~V  103 (241)
                      ..                 ..++||+.||++++|+  +..||.||.+.|-+++
T Consensus       116 rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~--~r~yikdD~ifi~~~~  166 (167)
T cd03782         116 DPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLR--SRDFIKGDDVIFLLTM  166 (167)
T ss_pred             CCcccCcccccccccccccccccCccceeeHHHHh--hcCcccCCeEEEEEec
Confidence            11                 4689999999999999  6889999999988765

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>smart00061 MATH meprin and TRAF homology

Probab=99.14  E-value=3.2e-10  Score=79.57  Aligned_cols=65  Identities=34%  Similarity=0.585  Sum_probs=52.6

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcCCccCcccccee
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFI   79 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi   79 (241)
                      ||++||+       .+|+|+||.|.+....+.+|++.|+++|+|+|++++....  .    ..+.|.. ..+|||.+||
T Consensus        31 ~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~~~--~----~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       31 RLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSLSK--K----DKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             EEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEEee--e----eeEEEcC-CCccceeeEC
Confidence            5899998       3799999999876555558999999999999999876532  2    4678876 6889999886

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.96  E-value=1.7e-10  Score=98.31  Aligned_cols=153  Identities=24%  Similarity=0.320  Sum_probs=113.8

Q ss_pred             cEEEEEEEcCCCCCCCCCEEEEEEEEEEEcCCCCce-eEEeccCCceeeEEcC--CccCccccceeeccccccCCCCeee
Q 036526           17 HISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSY-SVAQDAVGKERRRFNG--LKLEWGFDQFIPLEAFNDASNGYPV   93 (241)
Q Consensus        17 ~lS~~L~~~~~~~~~~~w~~~~~~~l~l~n~~~~~~-~~~~~~~~~~~~~F~~--~~~~wG~~~fi~~~~L~~~~~gyl~   93 (241)
                      +++.|+.+....    +|.+.+.+.|.+.|+...++ .....    ....|..  ....||+..+++...+.++..||+.
T Consensus        42 ~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~  113 (297)
T KOG1987|consen   42 YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYLSTVEE----GFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLV  113 (297)
T ss_pred             EEEEEEEeccCC----CcceeEEEEEEEccCCCcceeeeeee----eEEeccccccccccCcccccChHHhhcccCcEEE
Confidence            455666555431    79999999999999988765 43311    2333333  3578999999999999988899999


Q ss_pred             cCeEEEEEEEEE-eeeecccceeeee--------eeeccC----cEEEEEEccccccCC----ceEeeCcEEECCeEEEE
Q 036526           94 DDTCVFGAEVFV-KERNIIEGECLSM--------AKITSG----CKFVWMVENFSKLDE----RRQESQVFCAGEHKWKI  156 (241)
Q Consensus        94 dD~l~i~~~V~v-~~~~~~~~e~~~~--------~~~~~~----~~~~~~I~nfs~~~~----~~~~S~~f~~gg~~W~i  156 (241)
                      ++.+++-+.+.| +..  .++|.+..        .++...    ..|.|.+.+++..+.    ....+..|.+++..|++
T Consensus       114 ~~~~~~~a~~~V~~~~--~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~  191 (297)
T KOG1987|consen  114 AHKLVLVARSEVFEAM--GKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKL  191 (297)
T ss_pred             cCceEEEeeecceeee--cccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHH
Confidence            988888888777 554  45554322        223444    789999999999873    26677899999999999


Q ss_pred             EEEcCCCCCCCCCeEEEEEEecC
Q 036526          157 VLYPMGNGCGDGDHLSLFLAFED  179 (241)
Q Consensus       157 ~~yp~g~~~~~~~~ls~~L~~~~  179 (241)
                      .++|.+....+...++.+|...+
T Consensus       192 ~~~~~l~~~~~~~~~~~~l~~~~  214 (297)
T KOG1987|consen  192 ACMPVLLSLIETLNVSQSLQEAS  214 (297)
T ss_pred             HHHHHHHHHHHhhhhcccHHHhc
Confidence            99999987655667888887655

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.3e-09  Score=99.50  Aligned_cols=107  Identities=21%  Similarity=0.355  Sum_probs=83.7

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCC---CCCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcCCccCccccc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTS---SLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQ   77 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~---~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~   77 (241)
                      +|.++|+|+..   .+ +|+||+....+   .....|.|+|+|.|.|-|...+.......    +.|+|+...++|||.+
T Consensus        68 ki~lfPqG~nq---~~-~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~p~~pti~~iN~----sHhrFs~~~tDwGFt~  139 (1089)
T COG5077          68 KIILFPQGNNQ---CN-VSVYLEYEPQELEETGGKYYDCCAQFAFDISNPKYPTIEYINK----SHHRFSMESTDWGFTN  139 (1089)
T ss_pred             EEEEecccCCc---cc-cEEEEEeccchhhhhcCcchhhhhheeeecCCCCCCchhhhhc----ccccccccccccchhh
Confidence            58899999872   22 99999987543   12245999999999999887654333222    5799998889999999


Q ss_pred             eeeccccccCCCC---eeecCeEEEEEEEEE-eeeeccccee
Q 036526           78 FIPLEAFNDASNG---YPVDDTCVFGAEVFV-KERNIIEGEC  115 (241)
Q Consensus        78 fi~~~~L~~~~~g---yl~dD~l~i~~~V~v-~~~~~~~~e~  115 (241)
                      |+.+..|.-|+.|   |+.+|++.|.|.|.| +.|+...|..
T Consensus       140 f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGVLWHs  181 (1089)
T COG5077         140 FIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGVLWHS  181 (1089)
T ss_pred             hhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccceeec
Confidence            9999999877665   799999999999999 8876555543

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.94  E-value=0.00013  Score=62.06  Aligned_cols=104  Identities=32%  Similarity=0.515  Sum_probs=79.8

Q ss_pred             EEEEEccccccCCceEeeCcEEECCeEEEEEEEcCCCCCCCCCeEEEEEEecCCCCCCceEEEEEEEEEEcCCCCcc-e-
Q 036526          127 FVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAIKVYARYTLRILDQVGAKH-K-  204 (241)
Q Consensus       127 ~~~~I~nfs~~~~~~~~S~~f~~gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~~~~~f~~~l~~~~~~~~-~-  204 (241)
                      +.|.+.+++... ..++|..|..+|..|++.+||.|+      +++.|+.+....  +|.+.+.++|.+.||..... . 
T Consensus         6 ~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~l~v~n~~~~~~~~~   76 (297)
T KOG1987|consen    6 FTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDSP--GWERYAKLRLTVVNQKSEKYLST   76 (297)
T ss_pred             cceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccCC--CcceeEEEEEEEccCCCcceeee
Confidence            449999999887 678999999999999999999973      799999887622  79999999999999987633 1 


Q ss_pred             ---eeEe---e-------e---eecc---CCCCCeEeCCEEEEEEEEEEEeeec
Q 036526          205 ---SFQG---K-------V---SSLN---EPETGFLVNDVCLVEAEVAVLGIST  239 (241)
Q Consensus       205 ---~f~~---~-------~---~~~~---~~~~~yl~~d~l~i~~~V~v~~~~~  239 (241)
                         .+..   +       +   ++..   +...||+.++.+.+-+.+.|++..+
T Consensus        77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~  130 (297)
T KOG1987|consen   77 VEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMG  130 (297)
T ss_pred             eeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeec
Confidence               1111   0       1   2222   4568999998888888887776554

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=2.7e-05  Score=77.11  Aligned_cols=99  Identities=21%  Similarity=0.292  Sum_probs=81.4

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcCCccCccccceee
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIP   80 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~   80 (241)
                      ++++.|+|+.    ...++.||.+...... ..|.+.+++.+.+.|..+........    ..|+|.....+||+.+|+.
T Consensus        56 ~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~~~~~~~~----~~h~~~~~~~dwg~~~~~~  126 (1093)
T KOG1863|consen   56 KILIAPKVNS----LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDNLPDPEKA----IHHVFTADERDWGFSCFST  126 (1093)
T ss_pred             eeeeccccCc----ccceeEEeeeccCCCC-cceEecchhhhccccCCCCchhhhhh----hhhcccccccchhhccchh
Confidence            4678899874    4678999999976655 45999999999999944443332222    5789998889999999999


Q ss_pred             ccccccCCCCeeecCeEEEEEEEEE-eee
Q 036526           81 LEAFNDASNGYPVDDTCVFGAEVFV-KER  108 (241)
Q Consensus        81 ~~~L~~~~~gyl~dD~l~i~~~V~v-~~~  108 (241)
                      +.++.+|..||+.+|++.++++|.+ .+.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~  155 (1093)
T KOG1863|consen  127 SSDIRKPEDGYVRNGLEKLEKRVRVEQPT  155 (1093)
T ss_pred             HhhccCcccccccccceeeeeeeeeecCC
Confidence            9999999999999999999999999 554

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.00092  Score=66.47  Aligned_cols=113  Identities=25%  Similarity=0.249  Sum_probs=85.4

Q ss_pred             CcEEEEEEccccccCCceEeeCcEEECCeEEEEEEEcCCCCCCCCCeEEEEEEecCC-CCCCceEEEEEEEEEEcCCCC-
Q 036526          124 GCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDGDHLSLFLAFEDS-TLEAIKVYARYTLRILDQVGA-  201 (241)
Q Consensus       124 ~~~~~~~I~nfs~~~~~~~~S~~f~~gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~~-~~~~~~~~~~f~~~l~~~~~~-  201 (241)
                      ....+|...+...+.. ...||.|..|+.+|+|.+.|+++.   ...+++|+.+... ..+.|++++++.+.++|..+. 
T Consensus        26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~  101 (1093)
T KOG1863|consen   26 NQSTTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQSLKSWSCGAQAVLRVKNTIDNL  101 (1093)
T ss_pred             cccccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccCCCCcceEecchhhhccccCCCCc
Confidence            3455677766666654 778999999999999999999984   4679999999873 224699999999999993221 


Q ss_pred             ------cceeeEe--------eeeecc---CCCCCeEeCCEEEEEEEEEEEeeecc
Q 036526          202 ------KHKSFQG--------KVSSLN---EPETGFLVNDVCLVEAEVAVLGISTA  240 (241)
Q Consensus       202 ------~~~~f~~--------~~~~~~---~~~~~yl~~d~l~i~~~V~v~~~~~~  240 (241)
                            .|..|..        .++.++   +++.||+++|++.+++.|.+..-++.
T Consensus       102 ~~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~  157 (1093)
T KOG1863|consen  102 PDPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL  157 (1093)
T ss_pred             hhhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence                  1223322        234444   67899999999999999999887765

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.83  E-value=0.00086  Score=59.35  Aligned_cols=78  Identities=23%  Similarity=0.354  Sum_probs=66.4

Q ss_pred             eccCcEEEEEEccccccC-------CceEeeCcEEE--CCeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCCC--CceEE
Q 036526          121 ITSGCKFVWMVENFSKLD-------ERRQESQVFCA--GEHKWKIVLYPMGNGCGDGDHLSLFLAFED-STLE--AIKVY  188 (241)
Q Consensus       121 ~~~~~~~~~~I~nfs~~~-------~~~~~S~~f~~--gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~~--~~~~~  188 (241)
                      ....|...|+|.+|+..+       ...++|+.|..  .||..+.++|-+|+..+.+.++|+|+.+.. +..+  .|++.
T Consensus       276 ~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~  355 (391)
T KOG0297|consen  276 RSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFR  355 (391)
T ss_pred             hccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCC
Confidence            356899999999996554       25788999974  799999999999988878889999999988 4433  99999


Q ss_pred             EEEEEEEEcC
Q 036526          189 ARYTLRILDQ  198 (241)
Q Consensus       189 ~~f~~~l~~~  198 (241)
                      -++++.+++|
T Consensus       356 ~~v~~~l~dq  365 (391)
T KOG0297|consen  356 QKVTLMLLDQ  365 (391)
T ss_pred             CceEEEEecc
Confidence            9999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
1ca9_A	192	Structure Of Tnf Receptor Associated Factor 2 In Co		1e-04
1ca4_A	168	Structure Of Tnf Receptor Associated Factor 2 (Traf		1e-04
1czy_A	168	Crystal Structure Of The Complex Between The Traf D		2e-04
1czz_A	187	Structure Of Tnf Receptor Associated Factor 2 In Co		2e-04

>pdb|1CA9|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex With A Peptide From Tnf-R2 Length = 192

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 43/167 (25%)
Query: 111 IEGECLSMAKITSGCKFVWMVENFSKLDERRQE----------SQVFCAGEHKWKIVL-- 158
           +E + L M   T    F+W + +F++   +RQE          S  F    + +K+ L  
Sbjct: 29  LEQKVLEMEASTYDGVFIWKISDFAR---KRQEAVAGRIPAIFSPAFYTSRYGYKMCLRI 85
Query: 159 YPMGNGCGDGDHLSLFLAFEDSTLEAIKVYA---RYTLRILDQVGAKH-----------K 204
           Y  G+G G G HLSLF        +A+  +    + TL +LDQ   +H            
Sbjct: 86  YLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSS 145
Query: 205 SFQGKVSSLN--------------EPETGFLVNDVCLVEAEVAVLGI 237
           SFQ  V+ +N              E +  ++ +D   ++A V + G+
Sbjct: 146 SFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL 192

>pdb|1CA4|A Chain A, Structure Of Tnf Receptor Associated Factor 2 (Traf2) Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 43/167 (25%)
Query: 111 IEGECLSMAKITSGCKFVWMVENFSKLDERRQE----------SQVFCAGEHKWKIVL-- 158
           +E + L M   T    F+W + +F++   +RQE          S  F    + +K+ L  
Sbjct: 5   LEQKVLEMEASTYDGVFIWKISDFAR---KRQEAVAGRIPAIFSPAFYTSRYGYKMCLRI 61
Query: 159 YPMGNGCGDGDHLSLFLAFEDSTLEAIKVYA---RYTLRILDQVGAKH-----------K 204
           Y  G+G G G HLSLF        +A+  +    + TL +LDQ   +H            
Sbjct: 62  YLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSS 121
Query: 205 SFQGKVSSLN--------------EPETGFLVNDVCLVEAEVAVLGI 237
           SFQ  V+ +N              E +  ++ +D   ++A V + G+
Sbjct: 122 SFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL 168

>pdb|1CZY|A Chain A, Crystal Structure Of The Complex Between The Traf Domain Of Human Traf2 And An Lmp1 Binding Peptide Length = 168

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 43/167 (25%)
Query: 111 IEGECLSMAKITSGCKFVWMVENFSKLDERRQE----------SQVFCAGEHKWKIVL-- 158
           +E + L M   T    F+W + +F +   +RQE          S  F    + +K+ L  
Sbjct: 5   LEQKVLEMEASTYDGVFIWKISDFPR---KRQEAVAGRIPAIFSPAFYTSRYGYKMCLRI 61
Query: 159 YPMGNGCGDGDHLSLFLAFEDSTLEAIKVYA---RYTLRILDQVGAKH-----------K 204
           Y  G+G G G HLSLF        +A+  +    + TL +LDQ   +H            
Sbjct: 62  YLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSS 121
Query: 205 SFQGKVSSLN--------------EPETGFLVNDVCLVEAEVAVLGI 237
           SFQ  V+ +N              E +  ++ +D   ++A V + G+
Sbjct: 122 SFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL 168

>pdb|1CZZ|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex With A 17-Residue Cd40 Peptide Length = 187

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 43/167 (25%)
Query: 111 IEGECLSMAKITSGCKFVWMVENFSKLDERRQE----------SQVFCAGEHKWKIVL-- 158
           +E + L M   T    F+W + +F +   +RQE          S  F    + +K+ L  
Sbjct: 24  LEQKVLEMEASTYDGVFIWKISDFPR---KRQEAVAGRIPAIFSPAFYTSRYGYKMCLRI 80
Query: 159 YPMGNGCGDGDHLSLFLAFEDSTLEAIKVYA---RYTLRILDQVGAKH-----------K 204
           Y  G+G G G HLSLF        +A+  +    + TL +LDQ   +H            
Sbjct: 81  YLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSS 140
Query: 205 SFQGKVSSLN--------------EPETGFLVNDVCLVEAEVAVLGI 237
           SFQ  V+ +N              E +  ++ +D   ++A V + G+
Sbjct: 141 SFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL 187

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	1e-21
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	3e-21
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	2e-21
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	2e-17
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	1e-14
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	2e-09
1d00_A	168	Tumor necrosis factor receptor associated protein	6e-14
1d00_A	168	Tumor necrosis factor receptor associated protein	5e-09
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	9e-13
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	3e-10
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	4e-12
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	5e-09
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	6e-12
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	3e-06
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	7e-12
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	8e-09
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	9e-12
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	2e-10

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score = 86.8 bits (215), Expect = 1e-21
 Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 21/129 (16%)

Query: 126 KFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGD-GDHLSLFLAFEDSTLEA 184
            F + VE FS+L E    S         WKI++ P           +  FL     +   
Sbjct: 20  TFQFTVERFSRLSESV-LSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDST 78

Query: 185 I-KVYARYTLRILDQVGAK--------HKSFQG----------KVSSLNEPETGFLVNDV 225
               +A+  L+I++    +        H  F              S + +PE GF+ +D 
Sbjct: 79  SWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDK 138

Query: 226 CLVEAEVAV 234
              E  V  
Sbjct: 139 VTFEVFVQA 147

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score = 86.0 bits (213), Expect = 3e-21
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 1   KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
           K+++ P+    +  +  +  +L   +  S +  W  +A + L +++   D  S ++    
Sbjct: 48  KIMVMPRFYPDRPHQKSVGFFL-QCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRI-- 104

Query: 61  KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKE 107
                F   + +WGF  F+      D   G+  DD   F   V    
Sbjct: 105 --SHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADA 149

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 85.8 bits (212), Expect = 2e-21
 Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 27/143 (18%)

Query: 117 SMAKITSGCKFVWMVENFSKLDERRQE---SQVFCAGEH---KWKIVLYPMGNGCGDGDH 170
              K+     ++W + NFS   E   E   S  F +G +   KW + + P G      D+
Sbjct: 4   GSGKVVKF-SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDY 62

Query: 171 LSLFLAFEDSTLEAIKVYARYTLRILDQVGAKHKSFQG------------------KVSS 212
           LSL+L          +V A++   IL+  G + K+ +                   +   
Sbjct: 63  LSLYLLLVSC--PKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDF 120

Query: 213 LNEPETGFLVNDVCLVEAEVAVL 235
           L +   G L +D   +  EV+V+
Sbjct: 121 LLDEANGLLPDDKLTLFCEVSVV 143

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 75.4 bits (185), Expect = 2e-17
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 9/105 (8%)

Query: 1   KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
            L + PKG   ++ KD++SLYL +          EV A  +  +L+   +        + 
Sbjct: 47  CLRVNPKGLDEES-KDYLSLYLLLVSCP----KSEVRAKFKFSILNAKGEETKA----ME 97

Query: 61  KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFV 105
            +R        +WGF +FI  +   D +NG   DD      EV V
Sbjct: 98  SQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV 142

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 69.3 bits (169), Expect = 1e-14
 Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 39/165 (23%)

Query: 111 IEGECLSMAKITSGCKFVWMVENFSKLDERRQE-------SQVFCAGE--HKWKIVLYPM 161
           +E + L M   T    F+W + +F++  +           S  F      +K  + +Y  
Sbjct: 29  LEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLN 88

Query: 162 GNGCGDGDHLSLFLAFE----DSTLEAIKVYARYTLRILDQVGAKH-----------KSF 206
           G+G G G HLSLF        D+ L       + TL +LDQ   +H            SF
Sbjct: 89  GDGTGRGTHLSLFFVVMKGPNDALLRW-PFNQKVTLMLLDQNNREHVIDAFRPDVTSSSF 147

Query: 207 QGKVSSLN--------------EPETGFLVNDVCLVEAEVAVLGI 237
           Q  V+ +N              E +  ++ +D   ++A V + G+
Sbjct: 148 QRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL 192

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 54.6 bits (131), Expect = 2e-09
 Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 2   LVIYPKGNKSKNAKDHISLYLAVADTSS-LTFGWEVNAVSRLFLLDQNQ---DSYSVAQD 57
           L IY  G+       H+SL+  V    +     W  N    L LLDQN       +   D
Sbjct: 83  LRIYLNGD-GTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPD 141

Query: 58  AVGKE-RRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEV 103
                 +R  N + +  G   F P+    +A N Y  DD     A V
Sbjct: 142 VTSSSFQRPVNDMNIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIV 187

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 66.6 bits (162), Expect = 6e-14
 Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 39/150 (26%)

Query: 126 KFVWMVENFSKLDERRQE-------SQVFCAGE--HKWKIVLYPMGNGCGDGDHLSLFLA 176
            F+W + +F++  +           S  F      +K  + +Y  G+G G G HLSLF  
Sbjct: 20  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFV 79

Query: 177 FE----DSTLEAIKVYARYTLRILDQVGAKH-----------KSFQGKVSSLN------- 214
                 D+ L       + TL +LDQ   +H            SFQ  V+ +N       
Sbjct: 80  VMKGPNDALLRW-PFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 138

Query: 215 -------EPETGFLVNDVCLVEAEVAVLGI 237
                  E +  ++ +D   ++A V + G+
Sbjct: 139 FCPVSKMEAKNSYVRDDAIFIKAIVDLTGL 168

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 53.1 bits (127), Expect = 5e-09
 Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 2   LVIYPKGNKSKNAKDHISLYLAVADTSS-LTFGWEVNAVSRLFLLDQNQ---DSYSVAQD 57
           L IY  G+       H+SL+  V    +     W  N    L LLDQN       +   D
Sbjct: 59  LRIYLNGD-GTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPD 117

Query: 58  AVGKE-RRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEV 103
                 +R  N + +  G   F P+    +A N Y  DD     A V
Sbjct: 118 VTSSSFQRPVNDMNIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIV 163

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 63.4 bits (154), Expect = 9e-13
 Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 11/114 (9%)

Query: 2   LVIYPKGNKSKNAKDHISLYLAVADTSS-LTFGWEVNAVSRLFLLDQN--------QDSY 52
           + ++ +   ++   ++ISL++            W      RL +LDQ+        ++  
Sbjct: 45  MRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIM 104

Query: 53  SVAQDAVGKERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVK 106
               + +  +R         +G+  F+ LEA       +  DDT +   EV  +
Sbjct: 105 DAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTR 156

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 56.5 bits (136), Expect = 3e-10
 Identities = 28/154 (18%), Positives = 50/154 (32%), Gaps = 42/154 (27%)

Query: 122 TSGCKFVWMVENFSKLDERRQE-------SQVFCAGE--HKWKIVLYPMGNGCGD-GDHL 171
            +G  ++W + NF    + ++E       S  F  G+  +K  + L+          +++
Sbjct: 3   CNG-IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYI 61

Query: 172 SLFLAFEDSTLEAI---KVYARYTLRILDQVGAK--------------HKSFQGKVSSLN 214
           SLF+       ++           L ILDQ  A                 +FQ      N
Sbjct: 62  SLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRN 121

Query: 215 EP--------------ETGFLVNDVCLVEAEVAV 234
                           +  F+ +D  LV  EV+ 
Sbjct: 122 PKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVST 155

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 61.9 bits (150), Expect = 4e-12
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 37/150 (24%)

Query: 126 KFVWMVENFSKLDERRQE-------SQVFCAGE--HKWKIVLYPMGNGCGDGDHLSLFLA 176
             +W + ++ +  +           SQ F  G   +K    +Y  G+G G G HLSLF  
Sbjct: 41  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 100

Query: 177 FEDSTLEAI---KVYARYTLRILDQVGAKH------------KSFQGKVSSLNEP----- 216
                 +A+       + TL ++DQ  ++              SF+     +N       
Sbjct: 101 IMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPV 160

Query: 217 --------ETGFLVNDVCLVEAEVAVLGIS 238
                      ++ +D   ++  V    + 
Sbjct: 161 FVAQTVLENGTYIKDDTIFIKVIVDTSDLP 190

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 53.5 bits (128), Expect = 5e-09
 Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 9/108 (8%)

Query: 2   LVIYPKGNKSKNAKDHISLYLAVADTSS-LTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
             +Y  G+       H+SL+  +          W       L L+DQ      +      
Sbjct: 80  ARVYLNGD-GMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKP 138

Query: 61  KER-----RRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEV 103
                   +    + +  G   F+        +  Y  DDT      V
Sbjct: 139 DPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIV 184

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 63.0 bits (153), Expect = 6e-12
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 119 AKITSGCKFVWMVENFSKLDERRQE---SQVFCAGEH---KWKIVLYPMGNGCGDGDHLS 172
           +K+     ++W + NFS   E   E   S  F +G +   KW + + P G      D+LS
Sbjct: 2   SKVVKFS-YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLS 60

Query: 173 LFLAFEDSTLEAIKVYARYTLRILDQVGAKHKS 205
           L+L          +V A++   IL+  G + K+
Sbjct: 61  LYLLLVSC--PKSEVRAKFKFSILNAKGEETKA 91

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 9/104 (8%)

Query: 2   LVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGK 61
           L + PKG   ++ KD++SLYL +          EV A  +  +L+   +        +  
Sbjct: 44  LRVNPKGLDEES-KDYLSLYLLLVSCPK----SEVRAKFKFSILNAKGEETKA----MES 94

Query: 62  ERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFV 105
           +R        +WGF +FI      D +NG   DD      EV V
Sbjct: 95  QRAYRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSV 138

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 62.0 bits (150), Expect = 7e-12
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 37/150 (24%)

Query: 126 KFVWMVENFSKLDERRQE-------SQVFCAGE--HKWKIVLYPMGNGCGDGDHLSLFLA 176
             +W + ++ +  +           SQ F  G   +K    +Y  G+G G G HLSLF  
Sbjct: 77  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 136

Query: 177 FEDSTLEAI---KVYARYTLRILDQVGAKH------------KSFQGKVSSLNEP----- 216
                 +A+       + TL ++DQ  ++              SF+     +N       
Sbjct: 137 IMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPV 196

Query: 217 --------ETGFLVNDVCLVEAEVAVLGIS 238
                      ++ +D   ++  V    + 
Sbjct: 197 FVAQTVLENGTYIKDDTIFIKVIVDTSDLP 226

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 53.2 bits (127), Expect = 8e-09
 Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 9/108 (8%)

Query: 2   LVIYPKGNKSKNAKDHISLYLAVADTSS-LTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
             +Y  G+       H+SL+  +          W       L L+DQ      +      
Sbjct: 116 ARVYLNGD-GMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKP 174

Query: 61  KER-----RRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEV 103
                   +    + +  G   F+        +  Y  DDT      V
Sbjct: 175 DPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIV 220

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 63.1 bits (153), Expect = 9e-12
 Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 21/129 (16%)

Query: 126 KFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCGDG-DHLSLFL-AFEDSTLE 183
            F + VE FS+L E    S         WKI++ P           +  FL    +S   
Sbjct: 32  TFQFTVERFSRLSES-VLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDST 90

Query: 184 AIKVYARYTLRILDQVGAK-------HKSFQGK-----------VSSLNEPETGFLVNDV 225
           +   +A+  L+I++    +          F  K            S + +PE GF+ +D 
Sbjct: 91  SWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDK 150

Query: 226 CLVEAEVAV 234
              E  V  
Sbjct: 151 VTFEVFVQA 159

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 59.2 bits (143), Expect = 2e-10
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 1   KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
           K+++ P+    +  +  +  +L   +  S +  W  +A + L +++   D  S ++    
Sbjct: 60  KIMVMPRFYPDRPHQKSVGFFL-QCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRI-- 116

Query: 61  KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNIIE 112
                F   + +WGF  F+      D   G+  DD   F   V     + + 
Sbjct: 117 --SHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	99.95
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.94
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.91
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.9
1d00_A	168	Tumor necrosis factor receptor associated protein	99.9
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.9
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.89
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	99.88
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.88
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.87
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.87
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.86
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.85
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.81
1d00_A	168	Tumor necrosis factor receptor associated protein	99.77
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.76
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.75
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.75
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.75
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.74
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.72
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.72
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	98.96
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	98.22

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=99.95  E-value=3.5e-27  Score=181.39  Aligned_cols=119  Identities=21%  Similarity=0.266  Sum_probs=98.7

Q ss_pred             ccCcEEEEEEccccccCCceEeeCcEEECCeEEEEEEEcCCCCC-CCCCeEEEEEEecCCCCC-CceEEEEEEEEEEcCC
Q 036526          122 TSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGC-GDGDHLSLFLAFEDSTLE-AIKVYARYTLRILDQV  199 (241)
Q Consensus       122 ~~~~~~~~~I~nfs~~~~~~~~S~~f~~gg~~W~i~~yp~g~~~-~~~~~ls~~L~~~~~~~~-~~~~~~~f~~~l~~~~  199 (241)
                      ...++|+|+|+|||.++ +.++|+.|.+||++|+|++||+|+.. +..+|||+||+|..+..+ .|+++|+|+|+|+||.
T Consensus        16 ~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~~~l~l~~~~   94 (155)
T 2foj_A           16 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYR   94 (155)
T ss_dssp             CSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTTCCCSSCEEEEEEEEEECCSS
T ss_pred             CCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCEEEEEEEEEEEcCC
Confidence            35689999999999996 78999999999999999999999765 357899999999765444 7999999999999998


Q ss_pred             CCc-ce------eeE--------eeeeecc---CCCCCeEeCCEEEEEEEEEEEeeeccC
Q 036526          200 GAK-HK------SFQ--------GKVSSLN---EPETGFLVNDVCLVEAEVAVLGISTAM  241 (241)
Q Consensus       200 ~~~-~~------~f~--------~~~~~~~---~~~~~yl~~d~l~i~~~V~v~~~~~~~  241 (241)
                      ++. +.      .|.        .+||+++   ++++|||+||+|+|+|+|+|.+++|++
T Consensus        95 ~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~  154 (155)
T 2foj_A           95 DDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA  154 (155)
T ss_dssp             CGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred             CCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence            764 21      343        2689988   348999999999999999999999975

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.94  E-value=3e-26  Score=174.22  Aligned_cols=114  Identities=26%  Similarity=0.435  Sum_probs=97.7

Q ss_pred             eccCcEEEEEEccccccC---CceEeeCcEEECCe---EEEEEEEcCCCCCCCCCeEEEEEEecCCCCCCceEEEEEEEE
Q 036526          121 ITSGCKFVWMVENFSKLD---ERRQESQVFCAGEH---KWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAIKVYARYTLR  194 (241)
Q Consensus       121 ~~~~~~~~~~I~nfs~~~---~~~~~S~~f~~gg~---~W~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~~~~~f~~~  194 (241)
                      +...++|+|+|.|||.++   ++.++||+|.+||+   +|+|++||+|+..+..+|+|+||+|.+.  +.|+++|+|+|+
T Consensus         7 ~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~--~~w~v~a~f~l~   84 (145)
T 3ivv_A            7 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC--PKSEVRAKFKFS   84 (145)
T ss_dssp             CCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC--SSSEEEEEEEEE
T ss_pred             cEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC--CCCcEEEEEEEE
Confidence            367789999999999987   47899999999996   9999999999876667899999999873  379999999999


Q ss_pred             EEcCCCCcce--------eeE-------eeeeecc---CCCCCeEeCCEEEEEEEEEEEe
Q 036526          195 ILDQVGAKHK--------SFQ-------GKVSSLN---EPETGFLVNDVCLVEAEVAVLG  236 (241)
Q Consensus       195 l~~~~~~~~~--------~f~-------~~~~~~~---~~~~~yl~~d~l~i~~~V~v~~  236 (241)
                      |+||.++.+.        +|.       .+||+++   +++++||+||+|+|+|+|+|++
T Consensus        85 llnq~~~~~~~~~~~~~~~F~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~  144 (145)
T 3ivv_A           85 ILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ  144 (145)
T ss_dssp             EECTTSCEEEEEECSSCEEEETTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC
T ss_pred             EEecCCCceeeecccceEEecCCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEe
Confidence            9999986432        342       2689988   3568999999999999999975

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.91  E-value=5.4e-25  Score=172.82  Aligned_cols=117  Identities=25%  Similarity=0.376  Sum_probs=96.3

Q ss_pred             eccCcEEEEEEccccccCC-------ceEeeCcEEEC--CeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC--CCceEE
Q 036526          121 ITSGCKFVWMVENFSKLDE-------RRQESQVFCAG--EHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL--EAIKVY  188 (241)
Q Consensus       121 ~~~~~~~~~~I~nfs~~~~-------~~~~S~~f~~g--g~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~--~~~~~~  188 (241)
                      .+..|+|+|+|.|||.+++       ..++||.|.+|  ||+|+|++||+|+..+.++|+|+||+|.+ +..  .+|+++
T Consensus        20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~   99 (178)
T 4gjh_A           20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFR   99 (178)
T ss_dssp             CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCC
T ss_pred             cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceE
Confidence            4678999999999999863       27999999999  99999999999988766799999999976 322  389999


Q ss_pred             EEEEEEEEcCCCCc-ce-----------eeE------------eeeeecc---CCCCCeEeCCEEEEEEEEEEEee
Q 036526          189 ARYTLRILDQVGAK-HK-----------SFQ------------GKVSSLN---EPETGFLVNDVCLVEAEVAVLGI  237 (241)
Q Consensus       189 ~~f~~~l~~~~~~~-~~-----------~f~------------~~~~~~~---~~~~~yl~~d~l~i~~~V~v~~~  237 (241)
                      |+|+|+|+||.++. +.           .|.            .+||+++   ++.+|||+||+|+|+|+|.|.++
T Consensus       100 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~  175 (178)
T 4gjh_A          100 QRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL  175 (178)
T ss_dssp             CEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred             EEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence            99999999998653 11           121            2578888   34579999999999999987654

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.90  E-value=6e-24  Score=164.11  Aligned_cols=115  Identities=23%  Similarity=0.227  Sum_probs=92.3

Q ss_pred             ccCcEEEEEEccccccCC-----c--eEeeCcEEEC--CeEEEEEEEcCCCCCC-CCCeEEEEEEecC-CCC-C-CceEE
Q 036526          122 TSGCKFVWMVENFSKLDE-----R--RQESQVFCAG--EHKWKIVLYPMGNGCG-DGDHLSLFLAFED-STL-E-AIKVY  188 (241)
Q Consensus       122 ~~~~~~~~~I~nfs~~~~-----~--~~~S~~f~~g--g~~W~i~~yp~g~~~~-~~~~ls~~L~~~~-~~~-~-~~~~~  188 (241)
                      ...|+|+|+|.|||.+++     +  .++||+|.+|  ||+|+|++||+|+..+ +++|+|+||++.+ +.. . +|++.
T Consensus         2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~   81 (160)
T 1lb6_A            2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (160)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence            357899999999999863     3  8999999999  9999999999998754 3789999999986 332 2 79999


Q ss_pred             EEEEEEEEcCCCCc---ce--e---------eE-------------eeeeeccC-CCCCeEeCCEEEEEEEEEEEe
Q 036526          189 ARYTLRILDQVGAK---HK--S---------FQ-------------GKVSSLNE-PETGFLVNDVCLVEAEVAVLG  236 (241)
Q Consensus       189 ~~f~~~l~~~~~~~---~~--~---------f~-------------~~~~~~~~-~~~~yl~~d~l~i~~~V~v~~  236 (241)
                      |+|+|+|+||.+..   +.  .         |.             .+||++++ .++|||+||+|+|+|+|+|+.
T Consensus        82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~~~yl~dD~l~I~~~V~v~~  157 (160)
T 1lb6_A           82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRF  157 (160)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGTSCCCBTTBEEEEEEEEC--
T ss_pred             eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhhCCCccCCEEEEEEEEEEee
Confidence            99999999998751   10  1         21             25788883 457899999999999999874

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.90  E-value=2.1e-24  Score=167.92  Aligned_cols=115  Identities=28%  Similarity=0.430  Sum_probs=94.7

Q ss_pred             ccCcEEEEEEccccccCC-----c--eEeeCcEE--ECCeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC--CCceEEE
Q 036526          122 TSGCKFVWMVENFSKLDE-----R--RQESQVFC--AGEHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL--EAIKVYA  189 (241)
Q Consensus       122 ~~~~~~~~~I~nfs~~~~-----~--~~~S~~f~--~gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~--~~~~~~~  189 (241)
                      ...++|+|+|.|||.+++     +  .++||+|.  +|||+|+|++||+|+..+.++|+|+||++.+ +..  .+|+++|
T Consensus        16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~   95 (168)
T 1d00_A           16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ   95 (168)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence            578999999999999863     2  38999996  7999999999999987666799999999977 433  3899999


Q ss_pred             EEEEEEEcCCCCcce-----------eeE------------eeeeeccCCCC--CeEeCCEEEEEEEEEEEe
Q 036526          190 RYTLRILDQVGAKHK-----------SFQ------------GKVSSLNEPET--GFLVNDVCLVEAEVAVLG  236 (241)
Q Consensus       190 ~f~~~l~~~~~~~~~-----------~f~------------~~~~~~~~~~~--~yl~~d~l~i~~~V~v~~  236 (241)
                      +|+|+|+||.+.++.           .|.            .+||++++.++  |||+||+|+|+|+|+|.+
T Consensus        96 ~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~v~~  167 (168)
T 1d00_A           96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTG  167 (168)
T ss_dssp             CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSSSSSSBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhcccCCceeCCEEEEEEEEEecC
Confidence            999999999986532           131            25799985433  899999999999998743

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.90  E-value=1e-24  Score=173.35  Aligned_cols=115  Identities=27%  Similarity=0.426  Sum_probs=96.1

Q ss_pred             ccCcEEEEEEccccccCC-----c--eEeeCcEEE--CCeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC--CCceEEE
Q 036526          122 TSGCKFVWMVENFSKLDE-----R--RQESQVFCA--GEHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL--EAIKVYA  189 (241)
Q Consensus       122 ~~~~~~~~~I~nfs~~~~-----~--~~~S~~f~~--gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~--~~~~~~~  189 (241)
                      ...++|+|+|.|||.+++     +  .++||.|.+  |||+|+|++||+|+..+.++|+|+||++.+ +..  .+|+++|
T Consensus        40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a  119 (192)
T 1ca9_A           40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ  119 (192)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence            578999999999999863     2  599999999  999999999999987666789999999987 333  4899999


Q ss_pred             EEEEEEEcCCCCcce-----------eeE------------eeeeeccCC--CCCeEeCCEEEEEEEEEEEe
Q 036526          190 RYTLRILDQVGAKHK-----------SFQ------------GKVSSLNEP--ETGFLVNDVCLVEAEVAVLG  236 (241)
Q Consensus       190 ~f~~~l~~~~~~~~~-----------~f~------------~~~~~~~~~--~~~yl~~d~l~i~~~V~v~~  236 (241)
                      +|+|+|+||.++.+.           .|.            .+||++++.  .+|||+||+|+|+|+|+|.+
T Consensus       120 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~V~~  191 (192)
T 1ca9_A          120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTG  191 (192)
T ss_dssp             CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHSSCSSCBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhhccCCEeCCEEEEEEEEEecC
Confidence            999999999987432           132            257888843  58999999999999998854

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.89  E-value=5.6e-24  Score=169.43  Aligned_cols=117  Identities=21%  Similarity=0.337  Sum_probs=96.3

Q ss_pred             eccCcEEEEEEccccccCC-------ceEeeCcEEEC--CeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC--CCceEE
Q 036526          121 ITSGCKFVWMVENFSKLDE-------RRQESQVFCAG--EHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL--EAIKVY  188 (241)
Q Consensus       121 ~~~~~~~~~~I~nfs~~~~-------~~~~S~~f~~g--g~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~--~~~~~~  188 (241)
                      .+.+|.|+|+|.|||.+++       +.++||.|.+|  ||+|+|++||+|+..+.++|||+||.+.+ +.+  ..|++.
T Consensus        36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~  115 (198)
T 4ghu_A           36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK  115 (198)
T ss_dssp             CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEE
Confidence            3678999999999999863       58999999999  99999999999988766789999999986 322  389999


Q ss_pred             EEEEEEEEcCCCCc-ce-----------ee------------EeeeeeccC-CCCCeEeCCEEEEEEEEEEEee
Q 036526          189 ARYTLRILDQVGAK-HK-----------SF------------QGKVSSLNE-PETGFLVNDVCLVEAEVAVLGI  237 (241)
Q Consensus       189 ~~f~~~l~~~~~~~-~~-----------~f------------~~~~~~~~~-~~~~yl~~d~l~i~~~V~v~~~  237 (241)
                      |+|+|.|+||.+.. +.           .|            ..+||++++ .++|||+||+|+|+|+|+|+..
T Consensus       116 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~~  189 (198)
T 4ghu_A          116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDL  189 (198)
T ss_dssp             CCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTBEEEEEEECCTTC
T ss_pred             EEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhhcCCeeCCEEEEEEEEEeccC
Confidence            99999999998642 11           12            125788873 3479999999999999998754

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=99.88  E-value=1e-22  Score=156.32  Aligned_cols=103  Identities=19%  Similarity=0.389  Sum_probs=83.1

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcCCccCccccceee
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIP   80 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~   80 (241)
                      ||++||+|+..++.++|||+||+|... ..+.+|+++|+|+|+|+||.++..+..+.    ..+.|.....+|||++||+
T Consensus        48 ~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~~~~~~~~~~~~~----~~~~F~~~~~~wG~~~Fi~  122 (155)
T 2foj_A           48 KIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINYRDDEKSFSRR----ISHLFFHKENDWGFSNFMA  122 (155)
T ss_dssp             EEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEECCSSCGGGCEEEE----EEEEEETTBCEEEEEEEEE
T ss_pred             EEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEEcCCCCcceEEec----cEEEeCCCCCCEeECCeEE
Confidence            689999998621357899999999643 44667999999999999999876443333    4788987678999999999


Q ss_pred             ccccccCCCCeeecCeEEEEEEEEE-eee
Q 036526           81 LEAFNDASNGYPVDDTCVFGAEVFV-KER  108 (241)
Q Consensus        81 ~~~L~~~~~gyl~dD~l~i~~~V~v-~~~  108 (241)
                      |++|++|++|||+||+|+|+|+|+| ++.
T Consensus       123 ~~~L~~~~~~yl~dD~l~Ie~~V~V~~~t  151 (155)
T 2foj_A          123 WSEVTDPEKGFIDDDKVTFEVFVQADAPH  151 (155)
T ss_dssp             HHHHTCTTTSSCBTTBEEEEEEEEECCCB
T ss_pred             HHHhcCcCCCceECCEEEEEEEEEEeCcc
Confidence            9999988899999999999999999 553

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.88  E-value=8.7e-24  Score=167.81  Aligned_cols=116  Identities=22%  Similarity=0.361  Sum_probs=94.9

Q ss_pred             ccCcEEEEEEccccccC-----Cc--eEeeCcEEEC--CeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC--CCceEEE
Q 036526          122 TSGCKFVWMVENFSKLD-----ER--RQESQVFCAG--EHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL--EAIKVYA  189 (241)
Q Consensus       122 ~~~~~~~~~I~nfs~~~-----~~--~~~S~~f~~g--g~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~--~~~~~~~  189 (241)
                      ...++|+|+|.|||.++     ++  .++||+|.+|  ||+|+|++||+|+..++++|+|+||++.+ +..  .+|++.|
T Consensus        37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a  116 (192)
T 2gkw_A           37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  116 (192)
T ss_dssp             CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEE
Confidence            47899999999999986     23  5999999999  99999999999987667899999999986 332  2899999


Q ss_pred             EEEEEEEcCCCCc-ce-----------eeE------------eeeeeccC-CCCCeEeCCEEEEEEEEEEEee
Q 036526          190 RYTLRILDQVGAK-HK-----------SFQ------------GKVSSLNE-PETGFLVNDVCLVEAEVAVLGI  237 (241)
Q Consensus       190 ~f~~~l~~~~~~~-~~-----------~f~------------~~~~~~~~-~~~~yl~~d~l~i~~~V~v~~~  237 (241)
                      +|+|+|+||.+.. +.           .|.            .+||++++ .++|||+||+|+|+|+|.|.+.
T Consensus       117 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~~gyl~dD~l~I~~~V~v~~~  189 (192)
T 2gkw_A          117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDL  189 (192)
T ss_dssp             CEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTEEEEEEEECCTTS
T ss_pred             EEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCcCCCeeCCEEEEEEEEEcCCC
Confidence            9999999998863 21           131            25788873 3468999999999999987553

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.87  E-value=3.2e-23  Score=168.71  Aligned_cols=117  Identities=21%  Similarity=0.352  Sum_probs=96.5

Q ss_pred             ccCcEEEEEEccccccCC-------ceEeeCcEEEC--CeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC-C-CceEEE
Q 036526          122 TSGCKFVWMVENFSKLDE-------RRQESQVFCAG--EHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL-E-AIKVYA  189 (241)
Q Consensus       122 ~~~~~~~~~I~nfs~~~~-------~~~~S~~f~~g--g~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~-~-~~~~~~  189 (241)
                      ...++|+|+|.|||.+++       ..++||+|.+|  ||+|+|++||+|+..+.++|+|+||++.+ +.. . +|++.|
T Consensus        73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a  152 (228)
T 1flk_A           73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  152 (228)
T ss_dssp             CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred             CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence            478999999999999862       27999999999  99999999999987767899999999886 333 2 899999


Q ss_pred             EEEEEEEcCCCCc-ce-----------eeE------------eeeeeccC-CCCCeEeCCEEEEEEEEEEEeee
Q 036526          190 RYTLRILDQVGAK-HK-----------SFQ------------GKVSSLNE-PETGFLVNDVCLVEAEVAVLGIS  238 (241)
Q Consensus       190 ~f~~~l~~~~~~~-~~-----------~f~------------~~~~~~~~-~~~~yl~~d~l~i~~~V~v~~~~  238 (241)
                      +|+|+|+||.+.. +.           .|.            .+||++++ .++|||+||+|+|+|+|+|.++.
T Consensus       153 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~~~  226 (228)
T 1flk_A          153 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDLP  226 (228)
T ss_dssp             CEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSSSTTCCSSEEEEEEECCCTTSC
T ss_pred             EEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHccCCCccCCEEEEEEEEEccccc
Confidence            9999999998764 21           132            25788873 44799999999999999886653

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.87  E-value=2.3e-22  Score=152.65  Aligned_cols=96  Identities=30%  Similarity=0.429  Sum_probs=82.0

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcCCccCccccceee
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIP   80 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~   80 (241)
                      ||++||+|+.. +.++|||+||+|.+.    .+|+++|+|+|+|+||.++........   ..++|.. ..+|||++||+
T Consensus        47 ~i~~yP~G~~~-~~~~~lSlyL~l~~~----~~w~v~a~f~l~llnq~~~~~~~~~~~---~~~~F~~-~~~wG~~~Fi~  117 (145)
T 3ivv_A           47 CLRVNPKGLDE-ESKDYLSLYLLLVSC----PKSEVRAKFKFSILNAKGEETKAMESQ---RAYRFVQ-GKDWGFKKFIR  117 (145)
T ss_dssp             EEEEETTCSSG-GGTTEEEEEEEEEEC----SSSEEEEEEEEEEECTTSCEEEEEECS---SCEEEET-TCEEEEEEEEE
T ss_pred             EEEEEcCCCCC-CCCCeEEEEEEEcCC----CCCcEEEEEEEEEEecCCCceeeeccc---ceEEecC-CCCcCHHHeEE
Confidence            58999999873 467999999999874    369999999999999998876543322   4688874 58999999999


Q ss_pred             ccccccCCCCeeecCeEEEEEEEEE
Q 036526           81 LEAFNDASNGYPVDDTCVFGAEVFV  105 (241)
Q Consensus        81 ~~~L~~~~~gyl~dD~l~i~~~V~v  105 (241)
                      +++|+++++|||+||+|+|+|+|+|
T Consensus       118 ~~~L~~~~~~yl~dD~l~I~~~V~V  142 (145)
T 3ivv_A          118 RDFLLDEANGLLPDDKLTLFCEVSV  142 (145)
T ss_dssp             HHHHHCGGGCSSGGGCEEEEEEEEE
T ss_pred             hhhhccccCCcEeCCEEEEEEEEEE
Confidence            9999877899999999999999998

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.86  E-value=9.2e-22  Score=167.42  Aligned_cols=113  Identities=27%  Similarity=0.440  Sum_probs=91.9

Q ss_pred             ccCcEEEEEEccccccC---CceEeeCcEEECCe---EEEEEEEcCCCCCCCCCeEEEEEEecCCCCCCceEEEEEEEEE
Q 036526          122 TSGCKFVWMVENFSKLD---ERRQESQVFCAGEH---KWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAIKVYARYTLRI  195 (241)
Q Consensus       122 ~~~~~~~~~I~nfs~~~---~~~~~S~~f~~gg~---~W~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~~~~~f~~~l  195 (241)
                      ...++|+|+|.|||.++   ++.++||+|.+||+   +|+|.+||+|+..++++|+|+||+|.+.  +.|+++|+|+|+|
T Consensus         4 ~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~--~~~~v~a~~~~~l   81 (312)
T 3hqi_A            4 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC--PKSEVRAKFKFSI   81 (312)
T ss_dssp             EEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC--CC-CEEEEEEEEE
T ss_pred             eEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC--CCCcEEEEEEEEE
Confidence            34689999999999996   67899999999995   9999999999877677999999999862  2789999999999


Q ss_pred             EcCCCCcce--------eeE-------eeeeecc---CCCCCeEeCCEEEEEEEEEEEe
Q 036526          196 LDQVGAKHK--------SFQ-------GKVSSLN---EPETGFLVNDVCLVEAEVAVLG  236 (241)
Q Consensus       196 ~~~~~~~~~--------~f~-------~~~~~~~---~~~~~yl~~d~l~i~~~V~v~~  236 (241)
                      +||+|....        +|.       .+||+|+   ++.+|||+||+|+|+|+|+|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~F~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~  140 (312)
T 3hqi_A           82 LNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQ  140 (312)
T ss_dssp             ECTTSCEEEEEECSSCEEECTTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEE
T ss_pred             EeCCCCcccccccCCceeCCCCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEe
Confidence            999986432        232       2689988   3567999999999999999995

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.85  E-value=2.9e-21  Score=175.17  Aligned_cols=118  Identities=22%  Similarity=0.283  Sum_probs=93.9

Q ss_pred             ccCcEEEEEEccccccCCceEeeCcEEECCeEEEEEEEcCCCCCC-CCCeEEEEEEecCCCCC-CceEEEEEEEEEEcCC
Q 036526          122 TSGCKFVWMVENFSKLDERRQESQVFCAGEHKWKIVLYPMGNGCG-DGDHLSLFLAFEDSTLE-AIKVYARYTLRILDQV  199 (241)
Q Consensus       122 ~~~~~~~~~I~nfs~~~~~~~~S~~f~~gg~~W~i~~yp~g~~~~-~~~~ls~~L~~~~~~~~-~~~~~~~f~~~l~~~~  199 (241)
                      ...++|+|+|.|||.+++ .++|++|.+||++|+|.+||+|+..+ +.+|+|+||.|.+...+ .|+++|+|+|.|+||.
T Consensus        28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~f~l~l~n~~  106 (522)
T 2f1z_A           28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYR  106 (522)
T ss_dssp             CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTTCCCSSCBEEEEEEEEECCTT
T ss_pred             cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCCCCCCCceEEEEEEEEEEcCC
Confidence            346899999999999985 89999999999999999999997543 56899999999875444 8999999999999998


Q ss_pred             CCcc-e------eeE--------eeeeecc---CCCCCeEeCCEEEEEEEEEEEeeecc
Q 036526          200 GAKH-K------SFQ--------GKVSSLN---EPETGFLVNDVCLVEAEVAVLGISTA  240 (241)
Q Consensus       200 ~~~~-~------~f~--------~~~~~~~---~~~~~yl~~d~l~i~~~V~v~~~~~~  240 (241)
                      ++.. .      +|.        .+||+++   ++++|||+||+++|+|+|+|...+|.
T Consensus       107 ~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g~  165 (522)
T 2f1z_A          107 DDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV  165 (522)
T ss_dssp             CGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBSS
T ss_pred             CCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccccc
Confidence            6532 1      242        2578887   36789999999999999999776653

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.81  E-value=1.3e-20  Score=147.73  Aligned_cols=103  Identities=23%  Similarity=0.382  Sum_probs=80.7

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCC-CCCCCEEEEEEEEEEEcCCCCceeEEec--cCCceeeEEcC----CccCc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSS-LTFGWEVNAVSRLFLLDQNQDSYSVAQD--AVGKERRRFNG----LKLEW   73 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~-~~~~w~~~~~~~l~l~n~~~~~~~~~~~--~~~~~~~~F~~----~~~~w   73 (241)
                      ||++||+|+.. +.++|||+||+|++.+. ...+|+++|+|+|+|+||.++..+....  + ....+.|..    ...+|
T Consensus        63 ~i~~yP~G~~~-~~~~~lSlyL~l~~~~~d~~l~W~v~a~~~l~Lldq~~~~~~~~~~~~~-~~~~~~F~~p~~~~~~~w  140 (178)
T 4gjh_A           63 CARAYLNGDGS-GKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKA-DPNSSSFKRPDGEMNIAS  140 (178)
T ss_dssp             EEEEETTCCGG-GTTTEEEEEEEEBCCTTGGGSCSSCCCEEEEEECCTTSSCCCEEEEEEC-CTTCGGGSCCSSSBCCCE
T ss_pred             EEEEEECCCCC-CCCCEEEEEEEEecCCCCcccCCceEEEEEEEEEcCCCCcceeEEeecc-CCccccccCCcccccCCc
Confidence            58999999873 45799999999987542 2357999999999999999775443220  0 001355652    24689


Q ss_pred             cccceeeccccccCCCCeeecCeEEEEEEEEE
Q 036526           74 GFDQFIPLEAFNDASNGYPVDDTCVFGAEVFV  105 (241)
Q Consensus        74 G~~~fi~~~~L~~~~~gyl~dD~l~i~~~V~v  105 (241)
                      ||.+||++++|++|++|||+||+|+|+|+|.|
T Consensus       141 G~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i  172 (178)
T 4gjh_A          141 GCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL  172 (178)
T ss_dssp             EEEEEEEHHHHHCTTCCSSBTTBEEEEEEECC
T ss_pred             ChhheeEHHHhhccccCcCcCCEEEEEEEEEe
Confidence            99999999999987899999999999999988

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.77  E-value=1.4e-19  Score=140.52  Aligned_cols=103  Identities=25%  Similarity=0.384  Sum_probs=77.7

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCCC-CCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcC----CccCccc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLT-FGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNG----LKLEWGF   75 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~-~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~----~~~~wG~   75 (241)
                      ||++||+|+.. +.++|||+||++++.+..+ .+|+++|+|+|+|+||.+++............+.|..    ...+|||
T Consensus        58 ~i~~yP~G~~~-~~~~~lSlyL~l~~~~~~~~~~w~~~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~  136 (168)
T 1d00_A           58 CLRIYLNGDGT-GRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGC  136 (168)
T ss_dssp             EEEEETTCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEE
T ss_pred             EEEEEeCCCCC-CCCcEEEEEEEEecCCCCccCCCceEEEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCc
Confidence            58999999873 4679999999998765443 5799999999999999986533221000000124542    3468999


Q ss_pred             cceeeccccccCCCCeeecCeEEEEEEEEE
Q 036526           76 DQFIPLEAFNDASNGYPVDDTCVFGAEVFV  105 (241)
Q Consensus        76 ~~fi~~~~L~~~~~gyl~dD~l~i~~~V~v  105 (241)
                      .+||++++|+++ +|||+||+|+|+|+|+|
T Consensus       137 ~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v  165 (168)
T 1d00_A          137 PLFCPVSKMEAK-NSYVRDDAIFIKAIVDL  165 (168)
T ss_dssp             EEEEETTTTTSS-SSSSBTTEEEEEEEECC
T ss_pred             ceEeEHHHhccc-CCceeCCEEEEEEEEEe
Confidence            999999999953 39999999999999987

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.76  E-value=2.7e-19  Score=142.00  Aligned_cols=103  Identities=25%  Similarity=0.390  Sum_probs=78.3

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCCC-CCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEc----CCccCccc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLT-FGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFN----GLKLEWGF   75 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~-~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~----~~~~~wG~   75 (241)
                      ||++||+|+.. +.++|||+||++.+++..+ .+|+++|+|+|.|+||.+++............+.|.    ....+|||
T Consensus        82 ~i~~yP~G~~~-~~~~~lSlyL~l~~~~~~~~~~W~~~a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~  160 (192)
T 1ca9_A           82 CLRIYLNGDGT-GRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGC  160 (192)
T ss_dssp             EEEEETTCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEE
T ss_pred             EEEEEeCCCCC-CCCCEEEEEEEEccCCCCCcCCCceEEEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcCh
Confidence            58999999873 4679999999998865443 679999999999999998753221100000012353    12468999


Q ss_pred             cceeeccccccCCCCeeecCeEEEEEEEEE
Q 036526           76 DQFIPLEAFNDASNGYPVDDTCVFGAEVFV  105 (241)
Q Consensus        76 ~~fi~~~~L~~~~~gyl~dD~l~i~~~V~v  105 (241)
                      ++||++++|++ ++|||+||+++|+|+|+|
T Consensus       161 ~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V  189 (192)
T 1ca9_A          161 PLFCPVSKMEA-KNSYVRDDAIFIKAIVDL  189 (192)
T ss_dssp             EEEEETHHHHS-SCSSCBTTEEEEEEEECC
T ss_pred             hheeEHHHhhh-ccCCEeCCEEEEEEEEEe
Confidence            99999999986 589999999999999987

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.75  E-value=1.2e-18  Score=134.21  Aligned_cols=104  Identities=21%  Similarity=0.272  Sum_probs=74.6

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCC-CCCCEEEEEEEEEEEcCCCCce--eEEec--cCCceeeEEcC-----Cc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSL-TFGWEVNAVSRLFLLDQNQDSY--SVAQD--AVGKERRRFNG-----LK   70 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~-~~~w~~~~~~~l~l~n~~~~~~--~~~~~--~~~~~~~~F~~-----~~   70 (241)
                      +|++||+|+..+..++|||+||++++.+.. ..+|+++|+|+|+|+||.++..  +....  +.+ ....|..     ..
T Consensus        44 ~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~-~~~~f~~p~~~~~~  122 (160)
T 1lb6_A           44 CMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKP-ELLAFQRPTIPRNP  122 (160)
T ss_dssp             EEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCSEEEEEECCCSCTTSCCCEEEEEECCT-TSGGGSCCSSSBCS
T ss_pred             EEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceeeeEEEEEEcCCCccccccceEEeecCC-cchhccCCcccCCC
Confidence            589999998632247899999999876432 3469999999999999987631  11100  000 0122332     12


Q ss_pred             cCccccceeeccccccCCCCeeecCeEEEEEEEEE-ee
Q 036526           71 LEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFV-KE  107 (241)
Q Consensus        71 ~~wG~~~fi~~~~L~~~~~gyl~dD~l~i~~~V~v-~~  107 (241)
                      .+|||++||++++|+  ++|||+||+++|+|+|+| .+
T Consensus       123 ~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~~  158 (160)
T 1lb6_A          123 KGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFD  158 (160)
T ss_dssp             EEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC---
T ss_pred             CCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEeec
Confidence            379999999999999  689999999999999998 54

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.75  E-value=2.8e-19  Score=142.26  Aligned_cols=105  Identities=16%  Similarity=0.250  Sum_probs=79.0

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCC-CCCCEEEEEEEEEEEcCCCCceeEEec--cCC---ceeeEEcCCccCcc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSL-TFGWEVNAVSRLFLLDQNQDSYSVAQD--AVG---KERRRFNGLKLEWG   74 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~-~~~w~~~~~~~l~l~n~~~~~~~~~~~--~~~---~~~~~F~~~~~~wG   74 (241)
                      ||++||||+.. +.++|||+||.+++++.+ ...|++.|+|+|.|+||.++..+....  +..   ...+.|.....+||
T Consensus        79 ~i~~yPnG~~~-~~~~~lSlyL~l~~g~~D~~l~wp~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG  157 (198)
T 4ghu_A           79 CARVYLNGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG  157 (198)
T ss_dssp             EEEEETTCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEE
T ss_pred             EEEEEeCCCCC-CCCCeEEEEEEecCCccCCCCCceEEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcC
Confidence            58999999873 467999999999876432 347999999999999998765443221  000   00112333356899


Q ss_pred             ccceeeccccccCCCCeeecCeEEEEEEEEE-eee
Q 036526           75 FDQFIPLEAFNDASNGYPVDDTCVFGAEVFV-KER  108 (241)
Q Consensus        75 ~~~fi~~~~L~~~~~gyl~dD~l~i~~~V~v-~~~  108 (241)
                      |++||++++|+  ++|||+||+++|+|+|.| ..+
T Consensus       158 ~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~~  190 (198)
T 4ghu_A          158 CPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLP  190 (198)
T ss_dssp             EEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTCC
T ss_pred             chhEeEHHHhh--hcCCeeCCEEEEEEEEEeccCC
Confidence            99999999999  589999999999999999 554

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.75  E-value=2.6e-18  Score=146.03  Aligned_cols=99  Identities=29%  Similarity=0.418  Sum_probs=81.5

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcCCccCccccceee
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIP   80 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~   80 (241)
                      ||.+||+|+.. +.++|+|+||+|.+.    .+|+++|+|+|+|+||+++........   ..++|.. ..+|||++||+
T Consensus        43 ~i~~yP~G~~~-~~~~~lslyL~~~~~----~~~~v~a~~~~~l~~~~~~~~~~~~~~---~~~~F~~-~~~wG~~~Fi~  113 (312)
T 3hqi_A           43 CLRVNPKGLDE-ESKDYLSLYLLLVSC----PKSEVRAKFKFSILNAKGEETKAMESQ---RAYRFVQ-GKDWGFKKFIR  113 (312)
T ss_dssp             EEEEETTCCC---CTTEEEEEEEEEEC----CC-CEEEEEEEEEECTTSCEEEEEECS---SCEEECT-TCEEEEEEEEE
T ss_pred             EEEEECCCCCc-cCCCcEEEEEEEcCC----CCCcEEEEEEEEEEeCCCCcccccccC---CceeCCC-CCCcCHHHhcc
Confidence            58999999873 467999999999864    358999999999999998876544322   4678875 46899999999


Q ss_pred             ccccccCCCCeeecCeEEEEEEEEE-eee
Q 036526           81 LEAFNDASNGYPVDDTCVFGAEVFV-KER  108 (241)
Q Consensus        81 ~~~L~~~~~gyl~dD~l~i~~~V~v-~~~  108 (241)
                      |++|+++++|||+||+++|+|+|+| ++.
T Consensus       114 ~~~L~~~~~~yl~dD~l~i~~~v~v~~~~  142 (312)
T 3hqi_A          114 RGFLLDEANGLLPDDKLTLFCEVSVVQDS  142 (312)
T ss_dssp             HHHHTCGGGCCCGGGCEEEEEEEEEEEEC
T ss_pred             HHHhhccccCeecCCEEEEEEEEEEEecc
Confidence            9999877789999999999999999 653

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.74  E-value=4.2e-19  Score=140.75  Aligned_cols=102  Identities=18%  Similarity=0.283  Sum_probs=78.0

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCC-CCCCEEEEEEEEEEEcCCCCceeEEeccC-CceeeEEcCC----ccCcc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSL-TFGWEVNAVSRLFLLDQNQDSYSVAQDAV-GKERRRFNGL----KLEWG   74 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~-~~~w~~~~~~~l~l~n~~~~~~~~~~~~~-~~~~~~F~~~----~~~wG   74 (241)
                      +|++||||+.. +.++|||+||++++++.+ ..+|+++|+|+|+|+||.+++.+...... ....+.|...    ..+||
T Consensus        79 ~i~~yPnG~~~-~~~~~lSlyL~l~~~~~d~~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG  157 (192)
T 2gkw_A           79 CARVYLNGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG  157 (192)
T ss_dssp             EEEEETTCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEE
T ss_pred             EEEEEeCCCCC-CCCCEEEEEEEEecCCCCccCCCcEEEEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCC
Confidence            58999999863 468999999999876543 34799999999999999987554321100 0012456432    36899


Q ss_pred             ccceeeccccccCCCCeeecCeEEEEEEEEE
Q 036526           75 FDQFIPLEAFNDASNGYPVDDTCVFGAEVFV  105 (241)
Q Consensus        75 ~~~fi~~~~L~~~~~gyl~dD~l~i~~~V~v  105 (241)
                      |++||++++|++  +|||+||+++|+|+|.|
T Consensus       158 ~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v  186 (192)
T 2gkw_A          158 CPVFVAQTVLEN--GTYIKDDTIFIKVIVDT  186 (192)
T ss_dssp             EEEEEEHHHHHH--TTSCBTTEEEEEEEECC
T ss_pred             hHHEeEHHHhCc--CCCeeCCEEEEEEEEEc
Confidence            999999999994  69999999999999987

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.72  E-value=3.8e-18  Score=154.66  Aligned_cols=102  Identities=20%  Similarity=0.391  Sum_probs=81.7

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcCCccCccccceee
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIP   80 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~   80 (241)
                      ||++||+|+..++.++|||+||+|.+. ..+.+|.++|+|+|.|+|+.++..+..+.    ..++|.....+|||.+||+
T Consensus        60 ~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~~~~~~~~~~~----~~~~F~~~~~~wG~~~Fi~  134 (522)
T 2f1z_A           60 KIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINYRDDEKSFSRR----ISHLFFHKENDWGFSNFMA  134 (522)
T ss_dssp             EEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCTTCGGGCEEEE----CCEEECGGGCEEEESSSSB
T ss_pred             EEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcCCCCccceecc----ceeEecCCCCCcchhheeE
Confidence            689999997632367999999999876 45678999999999999998876554443    4788987678899999999


Q ss_pred             ccccccCCCCeeecCeEEEEEEEEE-ee
Q 036526           81 LEAFNDASNGYPVDDTCVFGAEVFV-KE  107 (241)
Q Consensus        81 ~~~L~~~~~gyl~dD~l~i~~~V~v-~~  107 (241)
                      +++|.++++|||+||+++|+|+|+| .+
T Consensus       135 ~~~L~~~~~g~L~nD~l~i~~~V~v~~p  162 (522)
T 2f1z_A          135 WSEVTDPEKGFIDDDKVTFEVFVQADAP  162 (522)
T ss_dssp             HHHHSCGGGSSCBTTBEEEEEEEEECCC
T ss_pred             hhHhcCcccCcccCCcEEEEEEeecccc
Confidence            9999877899999999999999999 54

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.72  E-value=1.9e-18  Score=140.49  Aligned_cols=102  Identities=18%  Similarity=0.302  Sum_probs=78.2

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCC-CCCCEEEEEEEEEEEcCCCCceeEEec-cCCceeeEEcC----CccCcc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSL-TFGWEVNAVSRLFLLDQNQDSYSVAQD-AVGKERRRFNG----LKLEWG   74 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~-~~~w~~~~~~~l~l~n~~~~~~~~~~~-~~~~~~~~F~~----~~~~wG   74 (241)
                      +|++||||+.. +.++|+|+||.+++++.. ...|++.|+|+|+|+||.+++.+.... ......+.|..    ...+||
T Consensus       115 ~i~~yPnG~~~-~~~~~lSlyL~l~~~~~d~~l~Wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG  193 (228)
T 1flk_A          115 CARVYLNGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG  193 (228)
T ss_dssp             CEEEETTCCGG-GTTTEEEEEECCBCCTTTTSSCSSCCCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCS
T ss_pred             EEEEEcCCCCC-CCCCEEEEEEEEecCCccccCCCcEEEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcC
Confidence            68999999873 568999999999876543 347999999999999999876443211 00001234542    246899


Q ss_pred             ccceeeccccccCCCCeeecCeEEEEEEEEE
Q 036526           75 FDQFIPLEAFNDASNGYPVDDTCVFGAEVFV  105 (241)
Q Consensus        75 ~~~fi~~~~L~~~~~gyl~dD~l~i~~~V~v  105 (241)
                      |++||++++|+  ++|||+||+++|+|+|.|
T Consensus       194 ~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v  222 (228)
T 1flk_A          194 CPVFVAQTVLE--NGTYIKDDTIFIKVIVDT  222 (228)
T ss_dssp             EEEEEEHHHHS--SSTTCCSSEEEEEEECCC
T ss_pred             HHHeeEHHHHc--cCCCccCCEEEEEEEEEc
Confidence            99999999999  489999999999999988

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=98.96  E-value=2.3e-09  Score=97.34  Aligned_cols=108  Identities=15%  Similarity=0.197  Sum_probs=84.1

Q ss_pred             ccCcEEEEEEccccccC---CceEeeCcEE-ECCeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCCC--CceE-EEEEEE
Q 036526          122 TSGCKFVWMVENFSKLD---ERRQESQVFC-AGEHKWKIVLYPMGNGCGDGDHLSLFLAFED-STLE--AIKV-YARYTL  193 (241)
Q Consensus       122 ~~~~~~~~~I~nfs~~~---~~~~~S~~f~-~gg~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~~--~~~~-~~~f~~  193 (241)
                      ..+..+.|+|.||+++.   +..++||.|. ..||.++|.+||++     ..++|+|+++.+ +.+.  +|++ .-+++|
T Consensus       403 G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~  477 (592)
T 4gwm_A          403 TRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQQATM  477 (592)
T ss_dssp             SCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSEEEEE
T ss_pred             CCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCCEEEE
Confidence            56778999999999986   4689999997 47999999999975     579999999998 4433  9999 478999


Q ss_pred             EEEcCCCCc----ce--eeE----------------------------------------eeeeecc-CCCCCeEeCCEE
Q 036526          194 RILDQVGAK----HK--SFQ----------------------------------------GKVSSLN-EPETGFLVNDVC  226 (241)
Q Consensus       194 ~l~~~~~~~----~~--~f~----------------------------------------~~~~~~~-~~~~~yl~~d~l  226 (241)
                      .|+||+...    +.  +|.                                        ..||+.+ .....||+||.|
T Consensus       478 ~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~r~fiK~d~~  557 (592)
T 4gwm_A          478 TLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKSRDFIKGDDV  557 (592)
T ss_dssp             EECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTSTTSSBTTBE
T ss_pred             EEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhhcCcccCCeE
Confidence            999997532    11  111                                        1356666 345679999999


Q ss_pred             EEEEEEEE
Q 036526          227 LVEAEVAV  234 (241)
Q Consensus       227 ~i~~~V~v  234 (241)
                      .|.++|+=
T Consensus       558 ~i~~~~eD  565 (592)
T 4gwm_A          558 YILLTVED  565 (592)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            99999854

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=98.22  E-value=1.2e-06  Score=79.76  Aligned_cols=88  Identities=20%  Similarity=0.242  Sum_probs=60.3

Q ss_pred             CCcEEEEEEEcCCC-CCCCCCEE-EEEEEEEEEcCCCCce---eE----EeccCC---c------------eeeEEcC--
Q 036526           15 KDHISLYLAVADTS-SLTFGWEV-NAVSRLFLLDQNQDSY---SV----AQDAVG---K------------ERRRFNG--   68 (241)
Q Consensus        15 ~~~lS~~L~~~~~~-~~~~~w~~-~~~~~l~l~n~~~~~~---~~----~~~~~~---~------------~~~~F~~--   68 (241)
                      ..|+|+|++++.++ +....|++ .-++++.|+||+-...   +.    ..+...   .            ....|..  
T Consensus       448 ~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~  527 (592)
T 4gwm_A          448 VTNAGIYFHLISGANDDQLQWPCPWQQATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGT  527 (592)
T ss_dssp             SSEEEEEEEEECCTTGGGSCSSCCSEEEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCC
T ss_pred             CceEEEEEEEecCCCCCCccCCCCCCEEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCc
Confidence            46899999999865 34567999 4789999999963311   11    111000   0            0011221  


Q ss_pred             ---CccCccccceeeccccccCCCCeeecCeEEEEEEEE
Q 036526           69 ---LKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVF  104 (241)
Q Consensus        69 ---~~~~wG~~~fi~~~~L~~~~~gyl~dD~l~i~~~V~  104 (241)
                         ...+|||+.||+++.|.  +..||+||.+.|.++|.
T Consensus       528 ~~~r~~~~G~~~fish~~l~--~r~fiK~d~~~i~~~~e  564 (592)
T 4gwm_A          528 QFRRGGGYGTSAFITHERLK--SRDFIKGDDVYILLTVE  564 (592)
T ss_dssp             EEEEEEEEEEEEEEEHHHHT--STTSSBTTBEEEEEEEE
T ss_pred             ceeecCCcCccccccHHHHh--hcCcccCCeEEEEEEEE
Confidence               12578999999999998  67899999999999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	5e-17
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	3e-12
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	2e-16
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	8e-11
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	8e-13
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	2e-08
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	5e-12
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	4e-09

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (179), Expect = 5e-17
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 26/136 (19%)

Query: 125 CKFVWMVENFSKLDE---RRQESQVFCAGEH---KWKIVLYPMGNGCGDGDHLSLFLAFE 178
             ++W + NFS   E      +S  F +G +   KW + + P G      D+LSL+L   
Sbjct: 5   FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 64

Query: 179 DSTLEAIKVYARYTLRILDQVGAKHKSFQG------------------KVSSLNEPETGF 220
                  +V A++   IL+  G + K+ +                   +   L +   G 
Sbjct: 65  SCPKS--EVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGL 122

Query: 221 LVNDVCLVEAEVAVLG 236
           L +D   +  EV+V+ 
Sbjct: 123 LPDDKLTLFCEVSVVQ 138

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 3e-12
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 1   KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG 60
            L + PKG   ++ KD++SLYL +          EV A  +  +L+   +     +    
Sbjct: 41  CLRVNPKGLDEES-KDYLSLYLLLVSC----PKSEVRAKFKFSILNAKGEETKAME---- 91

Query: 61  KERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVFVKERNI 110
            +R        +WGF +FI  +   D +NG   DD      EV V + ++
Sbjct: 92  SQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSV 141

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 2e-16
 Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 37/149 (24%)

Query: 126 KFVWMVENFSKLDERRQE-------SQVFCAGE--HKWKIVLYPMGNGCGDGDHLSLFLA 176
            F+W + +F +  +           S  F      +K  + +Y  G+G G G HLSLF  
Sbjct: 4   VFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFV 63

Query: 177 FEDSTLEAI---KVYARYTLRILDQVGAKH-----------KSFQGKVSSLN-------- 214
                 +A+       + TL +LDQ   +H            SFQ  V+ +N        
Sbjct: 64  VMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 123

Query: 215 ------EPETGFLVNDVCLVEAEVAVLGI 237
                 E +  ++ +D   ++A V + G+
Sbjct: 124 CPVSKMEAKNSYVRDDAIFIKAIVDLTGL 152

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 8e-11
 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 2   LVIYPKGNKSKNAKDHISLYLAVADTSSL-TFGWEVNAVSRLFLLDQNQDSYSV----AQ 56
           L IY  G+ +     H+SL+  V    +     W  N    L LLDQN   + +      
Sbjct: 43  LRIYLNGDGTGR-GTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPD 101

Query: 57  DAVGKERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEV 103
                 +R  N + +  G   F P+    +A N Y  DD     A V
Sbjct: 102 VTSSSFQRPVNDMNIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIV 147

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 8e-13
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 37/150 (24%)

Query: 126 KFVWMVENFSKLDERRQE-------SQVFCAGE--HKWKIVLYPMGNGCGDGDHLSLFLA 176
             +W + ++ +  +           SQ F  G   +K    +Y  G+G G G HLSLF  
Sbjct: 4   VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 63

Query: 177 FEDSTLEAI---KVYARYTLRILDQVGAKH------------KSFQGKVSSLNEP----- 216
                 +A+       + TL ++DQ  ++              SF+     +N       
Sbjct: 64  IMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPV 123

Query: 217 --------ETGFLVNDVCLVEAEVAVLGIS 238
                      ++ +D   ++  V    + 
Sbjct: 124 FVAQTVLENGTYIKDDTIFIKVIVDTSDLP 153

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 9/108 (8%)

Query: 2   LVIYPKGNKSKNAKDHISLYLAVAD-TSSLTFGWEVNAVSRLFLLDQNQDSYSV-----A 55
             +Y  G+       H+SL+  +          W       L L+DQ      +      
Sbjct: 43  ARVYLNGDGMGKG-THLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKP 101

Query: 56  QDAVGKERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEV 103
                  ++    + +  G   F+        +  Y  DDT      V
Sbjct: 102 DPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIV 147

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 5e-12
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 11/111 (9%)

Query: 2   LVIYPKGNKSKNAKDHISLYLAVADTSSL-TFGWEVNAVSRLFLLDQNQD--------SY 52
           + ++ +   ++   ++ISL++            W      RL +LDQ++           
Sbjct: 45  MRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIM 104

Query: 53  SVAQDAVGKERRRFNGLKLEWGFDQFIPLEAFNDASNGYPVDDTCVFGAEV 103
               + +  +R         +G+  F+ LEA       +  DDT +   EV
Sbjct: 105 DAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEV 153

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 4e-09
 Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 41/148 (27%)

Query: 126 KFVWMVENFSKLDERRQE-------SQVFCAGE--HKWKIVLYPMGNG-CGDGDHLSLFL 175
            ++W + NF    + ++E       S  F  G+  +K  + L+          +++SLF+
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 176 A---FEDSTLEAIKVYARYTLRILDQVG--------------AKHKSFQGKVSSLNEP-- 216
                E  +           L ILDQ                 +  +FQ      N    
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 217 ------------ETGFLVNDVCLVEAEV 232
                       +  F+ +D  LV  EV
Sbjct: 126 GYVTFMHLEALRQRTFIKDDTLLVRCEV 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.9
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.89
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.89
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.87
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.82
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.76
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.73
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.71

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-24  Score=164.72  Aligned_cols=112  Identities=24%  Similarity=0.391  Sum_probs=92.7

Q ss_pred             CcEEEEEEccccccC-------CceEeeCcEEEC--CeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC-C-CceEEEEE
Q 036526          124 GCKFVWMVENFSKLD-------ERRQESQVFCAG--EHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL-E-AIKVYARY  191 (241)
Q Consensus       124 ~~~~~~~I~nfs~~~-------~~~~~S~~f~~g--g~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~-~-~~~~~~~f  191 (241)
                      .|+|+|+|.|||.++       +..++||.|.+|  ||+|+|.+||+|+..++.+|+||||++.+ +.. + .|++.++|
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKV   81 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccccceeeEE
Confidence            589999999999885       246899999998  99999999999988777899999999887 332 2 89999999


Q ss_pred             EEEEEcCCCCcce-----------ee------------EeeeeeccC--CCCCeEeCCEEEEEEEEEEE
Q 036526          192 TLRILDQVGAKHK-----------SF------------QGKVSSLNE--PETGFLVNDVCLVEAEVAVL  235 (241)
Q Consensus       192 ~~~l~~~~~~~~~-----------~f------------~~~~~~~~~--~~~~yl~~d~l~i~~~V~v~  235 (241)
                      +|+|+||.++.+.           .|            ..+||++++  .++|||+||+|+|+|+|.|.
T Consensus        82 ~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~~~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          82 TLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCCCSTTTSCSSCEEEEEEECCT
T ss_pred             EEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHhcccCCcEeCCEEEEEEEEEec
Confidence            9999999875432           01            125799884  45799999999999999764

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.5e-24  Score=160.22  Aligned_cols=113  Identities=21%  Similarity=0.331  Sum_probs=92.4

Q ss_pred             CcEEEEEEccccccC-------CceEeeCcEEEC--CeEEEEEEEcCCCCCCCCCeEEEEEEecC-CCC--CCceEEEEE
Q 036526          124 GCKFVWMVENFSKLD-------ERRQESQVFCAG--EHKWKIVLYPMGNGCGDGDHLSLFLAFED-STL--EAIKVYARY  191 (241)
Q Consensus       124 ~~~~~~~I~nfs~~~-------~~~~~S~~f~~g--g~~W~i~~yp~g~~~~~~~~ls~~L~~~~-~~~--~~~~~~~~f  191 (241)
                      +|+|+|+|.|||.++       +..++||.|.+|  ||+|+|.+||+|+..+..+|+||||++.+ +..  ..|++.++|
T Consensus         2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l~~yp~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (155)
T d1l0aa1           2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKV   81 (155)
T ss_dssp             SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTTTTSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccCCcEEEEE
Confidence            689999999999874       357999999998  99999999999998777899999999987 333  289999999


Q ss_pred             EEEEEcCCCCcce------------ee------------EeeeeeccC-CCCCeEeCCEEEEEEEEEEEe
Q 036526          192 TLRILDQVGAKHK------------SF------------QGKVSSLNE-PETGFLVNDVCLVEAEVAVLG  236 (241)
Q Consensus       192 ~~~l~~~~~~~~~------------~f------------~~~~~~~~~-~~~~yl~~d~l~i~~~V~v~~  236 (241)
                      +|+|+||.+....            .|            ..+||+++. ..+|||+||+|+|+|+|.+..
T Consensus        82 ~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~V~~~~  151 (155)
T d1l0aa1          82 TLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSD  151 (155)
T ss_dssp             EEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHHTTTTCBTTEEEEEEEECCSS
T ss_pred             EEEEecCCCCccceeEEEeeccccccccccccccccCcChhheeEHHHhhhCCCEECCEEEEEEEEEeCC
Confidence            9999999775321            01            235788873 357999999999999986543

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.6e-23  Score=156.26  Aligned_cols=113  Identities=27%  Similarity=0.405  Sum_probs=94.5

Q ss_pred             CcEEEEEEccccccC---CceEeeCcEEECCe---EEEEEEEcCCCCCCCCCeEEEEEEecCCCCCCceEEEEEEEEEEc
Q 036526          124 GCKFVWMVENFSKLD---ERRQESQVFCAGEH---KWKIVLYPMGNGCGDGDHLSLFLAFEDSTLEAIKVYARYTLRILD  197 (241)
Q Consensus       124 ~~~~~~~I~nfs~~~---~~~~~S~~f~~gg~---~W~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~~~~~f~~~l~~  197 (241)
                      ..+|+|+|.|||.++   +++++||.|.+||+   +|+|.+||+|+.++..+|+||||.+.+.  +.|++.++|+|.|+|
T Consensus         4 ~~~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~~~~~~~lSv~L~~~~~--~~~~v~~~~~~~l~n   81 (146)
T d2cr2a1           4 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC--PKSEVRAKFKFSILN   81 (146)
T ss_dssp             EEEEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCBEEEECTTCSSSSSSSBCCEEEECCCC--SSSEEEEECEEEEEC
T ss_pred             EEEEEEEECCchHHhhcCCCEEECCCEEeCCcCCeEEEEEEEECCCCCCCCCEEEEEEEeccC--CCceEEEEEEEEEEc
Confidence            467999999999986   36899999999875   7999999999988778899999998872  269999999999999


Q ss_pred             CCCCcce-------ee--------Eeeeeecc---CCCCCeEeCCEEEEEEEEEEEeee
Q 036526          198 QVGAKHK-------SF--------QGKVSSLN---EPETGFLVNDVCLVEAEVAVLGIS  238 (241)
Q Consensus       198 ~~~~~~~-------~f--------~~~~~~~~---~~~~~yl~~d~l~i~~~V~v~~~~  238 (241)
                      |.++...       .+        ..+||+++   ++.+|||+||+|+|+|+|+|++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1          82 AKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             TTSCEEEEEECSCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             CCCCcccceEecceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            9876432       11        12578877   577899999999999999998653

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.3e-22  Score=151.49  Aligned_cols=112  Identities=21%  Similarity=0.220  Sum_probs=91.1

Q ss_pred             ccCcEEEEEEccccccC-------CceEeeCcEEEC--CeEEEEEEEcCCCCCCC-CCeEEEEEEecC-CCC-C-CceEE
Q 036526          122 TSGCKFVWMVENFSKLD-------ERRQESQVFCAG--EHKWKIVLYPMGNGCGD-GDHLSLFLAFED-STL-E-AIKVY  188 (241)
Q Consensus       122 ~~~~~~~~~I~nfs~~~-------~~~~~S~~f~~g--g~~W~i~~yp~g~~~~~-~~~ls~~L~~~~-~~~-~-~~~~~  188 (241)
                      ...|+|+|+|.|||.++       +..++||.|.+|  ||+|+|.+||+|...+. .+|+|+||++.+ ... . +|++.
T Consensus         2 ~~~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~~   81 (155)
T d1lb6a_           2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (155)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccccEEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCCEEEEEEEEecCcccccCCCcEE
Confidence            46799999999999985       357999999999  99999999999987653 589999999987 332 2 89999


Q ss_pred             EEEEEEEEcCCCCcce-------------------ee--------EeeeeeccC-CCCCeEeCCEEEEEEEEE
Q 036526          189 ARYTLRILDQVGAKHK-------------------SF--------QGKVSSLNE-PETGFLVNDVCLVEAEVA  233 (241)
Q Consensus       189 ~~f~~~l~~~~~~~~~-------------------~f--------~~~~~~~~~-~~~~yl~~d~l~i~~~V~  233 (241)
                      ++++|.|+||.+....                   ++        ..+||+++. ..+|||+||+|+|+|+|+
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~~~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_          82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGTSCCCBTTBEEEEEEEE
T ss_pred             EEEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhccCCCEECCEEEEEEEEE
Confidence            9999999999875311                   01        125788884 456899999999999996

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.7e-21  Score=142.25  Aligned_cols=99  Identities=28%  Similarity=0.384  Sum_probs=82.8

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEEEEcCCCCceeEEeccCCceeeEEcCCccCccccceee
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSSLTFGWEVNAVSRLFLLDQNQDSYSVAQDAVGKERRRFNGLKLEWGFDQFIP   80 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~   80 (241)
                      ||++||+|+.. +.++|||+||.+.+.    .+|++.++|+|.|+|+.++.......    ..+.+.....+|||++||+
T Consensus        41 ~l~lyp~G~~~-~~~~~lSv~L~~~~~----~~~~v~~~~~~~l~n~~~~~~~~~~~----~~~~~~~~~~~~G~~~fi~  111 (146)
T d2cr2a1          41 CLRVNPKGLDE-ESKDYLSLYLLLVSC----PKSEVRAKFKFSILNAKGEETKAMES----QRAYRFVQGKDWGFKKFIR  111 (146)
T ss_dssp             EEEECTTCSSS-SSSSBCCEEEECCCC----SSSEEEEECEEEEECTTSCEEEEEEC----SCCEEEETTCEEEESCCSB
T ss_pred             EEEEEECCCCC-CCCCEEEEEEEeccC----CCceEEEEEEEEEEcCCCCcccceEe----cceEeCCCCCeeeccEEEE
Confidence            58999999874 578899999998864    35999999999999999887665543    2334444568899999999


Q ss_pred             ccccccCCCCeeecCeEEEEEEEEE-eee
Q 036526           81 LEAFNDASNGYPVDDTCVFGAEVFV-KER  108 (241)
Q Consensus        81 ~~~L~~~~~gyl~dD~l~i~~~V~v-~~~  108 (241)
                      +++|+++.+|||+||+|+|+|+|+| ++.
T Consensus       112 ~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1         112 RDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             HHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             HHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            9999999999999999999999999 554

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.6e-19  Score=136.15  Aligned_cols=103  Identities=27%  Similarity=0.402  Sum_probs=77.9

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCC-CCCCCEEEEEEEEEEEcCCCCceeEEeccCC----ceeeEEcCCccCccc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSS-LTFGWEVNAVSRLFLLDQNQDSYSVAQDAVG----KERRRFNGLKLEWGF   75 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~-~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~~----~~~~~F~~~~~~wG~   75 (241)
                      ||++||+|+.. +.++|+||||++.+++. .+..|+++++|+|.|+||.++..........    ...+.+.....+|||
T Consensus        42 ~l~~yP~G~~~-~~~~~lSlyL~l~~~~~d~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~  120 (152)
T d1czya1          42 CLRIYLNGDGT-GRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGC  120 (152)
T ss_dssp             EEEEETTCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEE
T ss_pred             EEEEEeCCCCC-CCCCEEEEEEEEccCCcCcccccceeeEEEEEEEcCCCCccceeeeccccccccccCCCcccccccch
Confidence            68999999873 56899999999987643 3457999999999999998876543321100    001122334578999


Q ss_pred             cceeeccccccCCCCeeecCeEEEEEEEEE
Q 036526           76 DQFIPLEAFNDASNGYPVDDTCVFGAEVFV  105 (241)
Q Consensus        76 ~~fi~~~~L~~~~~gyl~dD~l~i~~~V~v  105 (241)
                      ++||++++|+ +++|||.||+|+|+|+|.|
T Consensus       121 ~~fi~~~~L~-~~~gfl~dD~l~I~~~V~v  149 (152)
T d1czya1         121 PLFCPVSKME-AKNSYVRDDAIFIKAIVDL  149 (152)
T ss_dssp             EEEEETCCCC-CSTTTSCSSCEEEEEEECC
T ss_pred             hhEEEHHHhc-ccCCcEeCCEEEEEEEEEe
Confidence            9999999995 4679999999999999976

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.5e-19  Score=132.75  Aligned_cols=102  Identities=17%  Similarity=0.287  Sum_probs=78.1

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCC-CCCCCCEEEEEEEEEEEcCCCCceeEEeccC-----CceeeEEcCCccCcc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTS-SLTFGWEVNAVSRLFLLDQNQDSYSVAQDAV-----GKERRRFNGLKLEWG   74 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~-~~~~~w~~~~~~~l~l~n~~~~~~~~~~~~~-----~~~~~~F~~~~~~wG   74 (241)
                      ||++||+|+.. +.++|+|+||++.+++ +....|+++|+|+|.|+||.++..+......     ....+.+.....+||
T Consensus        42 ~l~~yp~G~~~-~~~~~lSlyL~l~~~~~d~~~~~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G  120 (155)
T d1l0aa1          42 CARVYLNGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG  120 (155)
T ss_dssp             EEEEETTCCGG-GTTTEEEEEEEEECCTTTTTSCSSCCCCEEEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEE
T ss_pred             EEEEEeCCCCC-CCCCEEEEEEEEccCCcCcccCCcEEEEEEEEEecCCCCccceeEEEeeccccccccccccccccCcC
Confidence            58999999873 5689999999998764 3345799999999999999887654332100     001122333457899


Q ss_pred             ccceeeccccccCCCCeeecCeEEEEEEEEE
Q 036526           75 FDQFIPLEAFNDASNGYPVDDTCVFGAEVFV  105 (241)
Q Consensus        75 ~~~fi~~~~L~~~~~gyl~dD~l~i~~~V~v  105 (241)
                      |++||++++|+  ++|||+||+|+|+|+|.+
T Consensus       121 ~~~fi~~~~L~--~~gfl~dD~l~I~~~V~~  149 (155)
T d1l0aa1         121 CPVFVAQTVLE--NGTYIKDDTIFIKVIVDT  149 (155)
T ss_dssp             EEEEEEHHHHH--TTTTCBTTEEEEEEEECC
T ss_pred             hhheeEHHHhh--hCCCEECCEEEEEEEEEe
Confidence            99999999998  689999999999999865

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.3e-18  Score=129.08  Aligned_cols=102  Identities=21%  Similarity=0.288  Sum_probs=76.5

Q ss_pred             CEEEeecCCCCCCCCCcEEEEEEEcCCCC-CCCCCEEEEEEEEEEEcCCCCceeEEec----cCC----ceeeEEcCCcc
Q 036526            1 KLVIYPKGNKSKNAKDHISLYLAVADTSS-LTFGWEVNAVSRLFLLDQNQDSYSVAQD----AVG----KERRRFNGLKL   71 (241)
Q Consensus         1 rl~~yP~G~~~~~~~~~lS~~L~~~~~~~-~~~~w~~~~~~~l~l~n~~~~~~~~~~~----~~~----~~~~~F~~~~~   71 (241)
                      ||.+||+|+..+..++|+|+||++.++.. ...+|+++++++|.|+||.+........    ...    ...+.+.....
T Consensus        44 rl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (155)
T d1lb6a_          44 CMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPK  123 (155)
T ss_dssp             EEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCSEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSE
T ss_pred             EEEEEeCCCCCCCCCCEEEEEEEEecCcccccCCCcEEEEEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcC
Confidence            68999999874445789999999987643 3457999999999999998764331110    000    01123333456


Q ss_pred             CccccceeeccccccCCCCeeecCeEEEEEEEE
Q 036526           72 EWGFDQFIPLEAFNDASNGYPVDDTCVFGAEVF  104 (241)
Q Consensus        72 ~wG~~~fi~~~~L~~~~~gyl~dD~l~i~~~V~  104 (241)
                      +|||++||++++|+  ++|||+||+|+|+|+|+
T Consensus       124 ~~G~~~fi~~~~L~--~~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_         124 GFGYVTFMHLEALR--QRTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             EEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEE
T ss_pred             CcChHHeeEHHHhc--cCCCEECCEEEEEEEEE
Confidence            89999999999998  68999999999999986