Citrus Sinensis ID: 036530

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDALASTRRSFSSCSSASSARASVACDSNSTNGV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccccEEEEEEcccHHHHcccHHHHHccccccccccccccccccccccccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHcccccEEEHHHHcHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
MANSRMARFFmevappqfvSVMRHRTPKMLDTIseeekdvsgsdalastrrsfsscssassarasvacdsnstngv
Flexible Loop (DISEMBL)
mansrmarffmevappqfvSVMRHRTPKMLdtiseeekdvsgsdalaSTRRsfsscssassarasvacdsnstngv
Low Complexity Region (SEG)
MANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDALastrrsfsscssassarasvacdsNSTNGV
Disordered region (IsUnstruct)
****************************************************************************
Disordered Region (DISOPRED)
******A**FMEVAPPQFVSVMRHRTPKML**********************************SVAC*S******
Disordered Region (DISEMBL)
MANSRMARFFMEVAPPQFVSVMRHRTPKMLDTI*******************************************
Disordered Region (DISPRO)
*****MARFFMEVAPPQFVSVMRHRTPKMLDTISEEEK************************R****C********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDALASTRRSFSSCSSASSARASVACDSNSTNGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
356510865	621	PREDICTED: CBL-interacting serine/threon	0.631	0.077	0.729	1e-13
357475041	85	hypothetical protein MTR_4g083110 [Medic	0.631	0.564	0.645	3e-12
255569999	79	hypothetical protein RCOM_0596970 [Ricin	0.631	0.607	0.708	3e-12
224116416	84	predicted protein [Populus trichocarpa]	0.605	0.547	0.695	4e-12
255557213	89	conserved hypothetical protein [Ricinus	0.631	0.539	0.708	7e-12
357491903	69	hypothetical protein MTR_5g077680 [Medic	0.697	0.768	0.584	1e-11
357491895	89	hypothetical protein MTR_5g077640 [Medic	0.631	0.539	0.625	3e-10
357475045	89	hypothetical protein MTR_4g083130 [Medic	0.631	0.539	0.645	3e-10
18397428	97	uncharacterized protein [Arabidopsis tha	0.592	0.463	0.673	1e-09
297845960	94	hypothetical protein ARALYDRAFT_890567 [	0.618	0.5	0.645	1e-09

>gi|356510865|ref|XP_003524154.1| PREDICTED: CBL-interacting serine/threonine-protein kinase 23-like [Glycine max]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/48 (72%), Positives = 45/48 (93%)

Query: 1  MANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDALAS 48
          MANSR+ARFFMEVAPPQ+V+VMRHRT KMLDTI+E+E+++S SD++ S
Sbjct: 1  MANSRIARFFMEVAPPQYVTVMRHRTSKMLDTITEDEREISTSDSVMS 48

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475041|ref|XP_003607806.1| hypothetical protein MTR_4g083110 [Medicago truncatula] gi|355508861|gb|AES90003.1| hypothetical protein MTR_4g083110 [Medicago truncatula]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/48 (64%), Positives = 45/48 (93%)

Query: 1  MANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDALAS 48
          MANSR+ARFFMEVAPPQ+VSVMRHRT KM++TI+E++++++ +D++ S
Sbjct: 1  MANSRIARFFMEVAPPQYVSVMRHRTSKMMETITEDDREINSNDSVIS 48

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569999|ref|XP_002525962.1| hypothetical protein RCOM_0596970 [Ricinus communis] gi|223534694|gb|EEF36386.1| hypothetical protein RCOM_0596970 [Ricinus communis]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 43/48 (89%)

Query: 1  MANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDALAS 48
          MA+SR+A+F  EVAPPQ++SVMRHR  KMLDTI+EEE+DVS S++LAS
Sbjct: 1  MASSRIAKFITEVAPPQYISVMRHRASKMLDTINEEERDVSPSNSLAS 48

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116416|ref|XP_002317294.1| predicted protein [Populus trichocarpa] gi|222860359|gb|EEE97906.1| predicted protein [Populus trichocarpa]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 39/46 (84%)

Query: 1  MANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDAL 46
          MANSR+A+F  E APPQ++SVMRHRT KMLDTISEE++DV+ SD  
Sbjct: 1  MANSRIAKFITEAAPPQYISVMRHRTSKMLDTISEEDRDVAASDPF 46

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557213|ref|XP_002519637.1| conserved hypothetical protein [Ricinus communis] gi|223541054|gb|EEF42610.1| conserved hypothetical protein [Ricinus communis]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 42/48 (87%)

Query: 1  MANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDALAS 48
          MANSR+ARF  EVAPPQ++SV+R R  KMLDTI+EEE+DVS S++LAS
Sbjct: 1  MANSRIARFITEVAPPQYISVIRRRASKMLDTINEEERDVSPSNSLAS 48

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491903|ref|XP_003616239.1| hypothetical protein MTR_5g077680 [Medicago truncatula] gi|355517574|gb|AES99197.1| hypothetical protein MTR_5g077680 [Medicago truncatula]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 46/53 (86%)

Query: 1  MANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDALASTRRSF 53
          MA+SR+ARFFMEVAPPQ+VSVMRHRT KM++TI+EE+++++  D++ S  ++ 
Sbjct: 1  MASSRVARFFMEVAPPQYVSVMRHRTSKMMETIAEEDREINSHDSVISLPKTL 53

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491895|ref|XP_003616235.1| hypothetical protein MTR_5g077640 [Medicago truncatula] gi|355517570|gb|AES99193.1| hypothetical protein MTR_5g077640 [Medicago truncatula]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 40/48 (83%)

Query: 1  MANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDALAS 48
          MA+SR+ARFFMEVAPPQ+VSVMR R   M++TI+EE++++S  D L S
Sbjct: 1  MASSRIARFFMEVAPPQYVSVMRQRASNMMETITEEDREISSHDNLIS 48

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475045|ref|XP_003607808.1| hypothetical protein MTR_4g083130 [Medicago truncatula] gi|355508863|gb|AES90005.1| hypothetical protein MTR_4g083130 [Medicago truncatula]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/48 (64%), Positives = 42/48 (87%)

Query: 1  MANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDALAS 48
          MANSR+ARFFMEVAPPQ+VSVMR RT  M++TI+EE+ ++S +D++ S
Sbjct: 1  MANSRIARFFMEVAPPQYVSVMRRRTSMMMETITEEDMEMSSNDSVIS 48

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397428|ref|NP_564352.1| uncharacterized protein [Arabidopsis thaliana] gi|12320849|gb|AAG50559.1|AC073506_1 hypothetical protein [Arabidopsis thaliana] gi|16323184|gb|AAL15326.1| At1g30260/F12P21_9 [Arabidopsis thaliana] gi|21436007|gb|AAM51581.1| At1g30260/F12P21_9 [Arabidopsis thaliana] gi|332193079|gb|AEE31200.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 39/46 (84%), Gaps = 1/46 (2%)

Query: 1  MANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDAL 46
          MA SR+ARF  EVAPPQFV+VMR RT K+LDTI EEE++V G+D++
Sbjct: 1  MATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREV-GTDSI 45

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845960|ref|XP_002890861.1| hypothetical protein ARALYDRAFT_890567 [Arabidopsis lyrata subsp. lyrata] gi|297336703|gb|EFH67120.1| hypothetical protein ARALYDRAFT_890567 [Arabidopsis lyrata subsp. lyrata]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/48 (64%), Positives = 41/48 (85%), Gaps = 1/48 (2%)

Query: 1  MANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDALAS 48
          MA++R+ARF  EVAPPQFV+VMR RT K+LDTI EEE++V G+D++ S
Sbjct: 1  MASARLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREV-GTDSIFS 47

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
TAIR|locus:2009782	97	AT1G30260 "AT1G30260" [Arabido	0.592	0.463	0.673	2.8e-11
TAIR|locus:2133094	741	GALT2 "AGP galactosyltransfera	0.486	0.049	0.717	1.2e-06

TAIR|locus:2009782 AT1G30260 "AT1G30260" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 31/46 (67%), Positives = 39/46 (84%)

Query:     1 MANSRMARFFMEVAPPQFVSVMRHRTPKMLDTISEEEKDVSGSDAL 46
             MA SR+ARF  EVAPPQFV+VMR RT K+LDTI EEE++V G+D++
Sbjct:     1 MATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREV-GTDSI 45

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2133094 GALT2 "AGP galactosyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 28/39 (71%), Positives = 30/39 (76%)

Query:     1 MANSRMARFFMEVAPPQFVSVMR-HRTPKM-LDTISEEE 37
             MA SR+ARF  EVAPPQFV+VMR HR  K  LDTI EEE
Sbjct:     1 MATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEE 39


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.126   0.344    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       76        52   0.00091  102 3  10 22  0.38    27
                                                     29  0.47    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  468 (50 KB)
  Total size of DFA:  85 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.00u 0.13s 9.13t   Elapsed:  00:00:01
  Total cpu time:  9.00u 0.13s 9.13t   Elapsed:  00:00:01
  Start:  Mon May 20 16:36:39 2013   End:  Mon May 20 16:36:40 2013

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

GO:0010405 "arabinogalactan protein metabolic process" evidence=IDA

GO:0012505 "endomembrane system" evidence=IDA

GO:0018258 "protein O-linked glycosylation via hydroxyproline" evidence=IDA

GO:0035250 "UDP-galactosyltransferase activity" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00110452 hypothetical protein (84 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00