Citrus Sinensis ID: 036534


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
MSANPSISGSVGGGGGGGGSSSGCGGGSGGSSGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLELPSPPPPPPSQNQMTAPPLSISGLPSASSMPATYDLSTLFDPMVQPAPWAMQQRQMDPRQFGGGDLQAMARELLHRQGSPPPGSMPCTDASSSPSLSK
cccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccccccccccc
ccccccccccccccccccccEccccccccccccHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHcccccccccHHHHHccccccHHccccHHHHHHHHHHHHcccccccccccccccccccccc
msanpsisgsvggggggggsssgcgggsggssgpcgackflrrkcvpgcifapyfdseqgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLAtlelpsppppppsqnqmtapplsisglpsassmpatydlstlfdpmvqpapwamqqrqmdprqfgggDLQAMARELLHrqgspppgsmpctdassspslsk
msanpsisgsvgggggGGGSSSGCGGGSGGSSGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLELPSPPPPPPSQNQMTAPPLSISGLPSASSMPATYDLSTLFDPMVQPAPWAMQQRQMDPRQFGGGDLQAMARELLHRqgspppgsmpctdassspslsk
MSANPSIsgsvggggggggsssgcgggsggssgPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLELpsppppppsQNQMTAPPLSISGLPSASSMPATYDLSTLFDPMVQPAPWAMQQRQMDPRQFGGGDLQAMARELLHRQGSPPPGSMPCTDASSSPSLSK
***********************************GACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLAT****************************************************************************************************
************************************ACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLA***********************************************************************MARELL************************
*********************************PCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLELPSP**********TAPPLSISGLPSASSMPATYDLSTLFDPMVQPAPWAMQQRQMDPRQFGGGDLQAMARELLHRQ*********************
********************************GPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLELPSP*********************************************************GGGDLQAMARELLHRQ*********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSANPSISGSVGGGGGGGGSSSGCGGGSGGSSGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLELPSPPPPPPSQNQMTAPPLSISGLPSASSMPATYDLSTLFDPMVQPAPWAMQQRQMDPRQFGGGDLQAMARELLHRQGSPPPGSMPCTDASSSPSLSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query237 2.2.26 [Sep-21-2011]
O22131262 LOB domain-containing pro yes no 0.835 0.755 0.654 3e-69
O81323228 LOB domain-containing pro no no 0.831 0.864 0.613 4e-60
O81322220 LOB domain-containing pro no no 0.789 0.85 0.502 1e-49
Q9SLB7245 LOB domain-containing pro no no 0.645 0.624 0.588 3e-44
Q9SRV3273 LOB domain-containing pro no no 0.497 0.432 0.728 2e-43
O22132191 LOB domain-containing pro no no 0.683 0.848 0.513 2e-43
Q9SLB6244 LOB domain-containing pro no no 0.535 0.520 0.620 2e-42
Q9M2J7218 LOB domain-containing pro no no 0.489 0.532 0.677 4e-42
Q9LHS8177 LOB domain-containing pro no no 0.531 0.711 0.586 1e-38
Q9SJW5188 LOB domain-containing pro no no 0.489 0.617 0.615 2e-37
>sp|O22131|LBD18_ARATH LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=2 SV=2 Back     alignment and function desciption
 Score =  261 bits (668), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 148/226 (65%), Positives = 171/226 (75%), Gaps = 28/226 (12%)

Query: 37  ACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTIC 96
           ACKFLRRKCVPGCIFAPYFDSEQG+A+FAAVHKVFGASNVSKLLLHIPVH+R DAVVTIC
Sbjct: 40  ACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVTIC 99

Query: 97  YEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLEL------PSPPPPPPSQ 150
           YEAQAR+RDP+YGCVAHIFALQQQVVNLQAE+SYLQAHLA+LEL      P P P P   
Sbjct: 100 YEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQTRPQPMPQPQPL 159

Query: 151 NQMTAPPLSISGLP-SASSMPATYDLSTLFDPMVQPAPWAMQQRQ-MDPR-QFG------ 201
                PPL+I+ LP S S +P+TYDL+++FD     + WA QQR+ +DPR Q+G      
Sbjct: 160 FFTPPPPLAITDLPASVSPLPSTYDLASIFDQTTSSSAWATQQRRFIDPRHQYGVSSSSS 219

Query: 202 ------GG----DLQAMARELLHRQGSPPPGSMPCTDASSSPSLSK 237
                 GG    DLQA+A ELLHRQGSPPP +   TD S S ++S+
Sbjct: 220 SVAVGLGGENSHDLQALAHELLHRQGSPPPAA---TDHSPSRTMSR 262





Arabidopsis thaliana (taxid: 3702)
>sp|O81323|LBD30_ARATH LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30 PE=2 SV=1 Back     alignment and function description
>sp|O81322|LBD31_ARATH LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2 Back     alignment and function description
>sp|Q9SLB7|LBD16_ARATH LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=2 SV=1 Back     alignment and function description
>sp|Q9SRV3|LBD20_ARATH LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20 PE=2 SV=1 Back     alignment and function description
>sp|O22132|LBD19_ARATH LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1 Back     alignment and function description
>sp|Q9SLB6|LBD17_ARATH LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1 Back     alignment and function description
>sp|Q9M2J7|LBD29_ARATH LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1 Back     alignment and function description
>sp|Q9LHS8|LBD33_ARATH LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1 Back     alignment and function description
>sp|Q9SJW5|LBD14_ARATH LOB domain-containing protein 14 OS=Arabidopsis thaliana GN=LBD14 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query237
255541332247 LOB domain-containing protein, putative 0.848 0.813 0.811 6e-86
296089158264 unnamed protein product [Vitis vinifera] 0.860 0.772 0.775 3e-82
224127394246 predicted protein [Populus trichocarpa] 0.856 0.825 0.808 5e-82
225453923251 PREDICTED: LOB domain-containing protein 0.860 0.812 0.775 6e-82
224063879217 predicted protein [Populus trichocarpa] 0.793 0.866 0.805 6e-80
449454632240 PREDICTED: LOB domain-containing protein 0.814 0.804 0.784 2e-78
356506343251 PREDICTED: LOB domain-containing protein 0.843 0.796 0.702 3e-73
356496402247 PREDICTED: LOB domain-containing protein 0.852 0.817 0.683 4e-72
297824591260 hypothetical protein ARALYDRAFT_483677 [ 0.835 0.761 0.651 3e-70
30690020262 LOB domain-containing protein 18 [Arabid 0.835 0.755 0.654 1e-67
>gi|255541332|ref|XP_002511730.1| LOB domain-containing protein, putative [Ricinus communis] gi|223548910|gb|EEF50399.1| LOB domain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  322 bits (826), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 177/218 (81%), Positives = 188/218 (86%), Gaps = 17/218 (7%)

Query: 37  ACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTIC 96
           ACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTIC
Sbjct: 30  ACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTIC 89

Query: 97  YEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLELPSPPPPPPSQNQMTAP 156
           YEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLELPSPPPPPP Q+ +  P
Sbjct: 90  YEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLELPSPPPPPPPQSLVPPP 149

Query: 157 PLSISGLPSASSMPATYDLSTLFDPMVQPAP-WAMQQRQMDPRQF--------------- 200
           PLSI+ LPSASS+PATYDLS+LFDPM QP+P WAMQQRQMDPRQF               
Sbjct: 150 PLSIADLPSASSVPATYDLSSLFDPMTQPSPSWAMQQRQMDPRQFGGGSSLGSSSATIGG 209

Query: 201 -GGGDLQAMARELLHRQGSPPPGSMPCTDASSSPSLSK 237
            GGGDL ++ARELLHR  SPP GS+PC+   SSPS+SK
Sbjct: 210 CGGGDLHSLARELLHRHASPPRGSVPCSGTLSSPSISK 247




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089158|emb|CBI38861.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224127394|ref|XP_002320063.1| predicted protein [Populus trichocarpa] gi|222860836|gb|EEE98378.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225453923|ref|XP_002279521.1| PREDICTED: LOB domain-containing protein 18 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224063879|ref|XP_002301295.1| predicted protein [Populus trichocarpa] gi|222843021|gb|EEE80568.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449454632|ref|XP_004145058.1| PREDICTED: LOB domain-containing protein 18-like [Cucumis sativus] gi|449472972|ref|XP_004153747.1| PREDICTED: LOB domain-containing protein 18-like [Cucumis sativus] gi|449527513|ref|XP_004170755.1| PREDICTED: LOB domain-containing protein 18-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356506343|ref|XP_003521944.1| PREDICTED: LOB domain-containing protein 18-like [Glycine max] Back     alignment and taxonomy information
>gi|356496402|ref|XP_003517057.1| PREDICTED: LOB domain-containing protein 18-like [Glycine max] Back     alignment and taxonomy information
>gi|297824591|ref|XP_002880178.1| hypothetical protein ARALYDRAFT_483677 [Arabidopsis lyrata subsp. lyrata] gi|297326017|gb|EFH56437.1| hypothetical protein ARALYDRAFT_483677 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30690020|ref|NP_850436.1| LOB domain-containing protein 18 [Arabidopsis thaliana] gi|27805494|sp|O22131.2|LBD18_ARATH RecName: Full=LOB domain-containing protein 18; AltName: Full=ASYMMETRIC LEAVES 2-like protein 20; Short=AS2-like protein 20 gi|17227164|gb|AAL38036.1|AF447891_1 LOB DOMAIN 18 [Arabidopsis thaliana] gi|20196916|gb|AAB82622.2| expressed protein [Arabidopsis thaliana] gi|106879179|gb|ABF82619.1| At2g45420 [Arabidopsis thaliana] gi|219807116|dbj|BAH10564.1| ASYMMETRIC LEAVES2-like 20 protein [Arabidopsis thaliana] gi|330255457|gb|AEC10551.1| LOB domain-containing protein 18 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query237
TAIR|locus:2050951262 LBD18 "LOB domain-containing p 0.708 0.641 0.711 2.7e-61
TAIR|locus:2126881228 JLO "JAGGED LATERAL ORGANS" [A 0.843 0.877 0.613 1.7e-59
TAIR|locus:2050862191 LBD19 "LOB domain-containing p 0.447 0.554 0.754 5.7e-43
TAIR|locus:2126866220 LBD31 "LOB domain-containing p 0.675 0.727 0.560 1.5e-42
TAIR|locus:2053807245 LBD16 "lateral organ boundarie 0.578 0.559 0.624 1.2e-40
TAIR|locus:2079354273 LBD20 "LOB domain-containing p 0.430 0.373 0.803 1.8e-39
TAIR|locus:2085420218 LBD29 "lateral organ boundarie 0.434 0.472 0.737 1.8e-39
TAIR|locus:2053813244 ASL15 "ASYMMETRIC LEAVES 2-lik 0.417 0.405 0.707 1.3e-36
TAIR|locus:2152820177 LBD33 "LOB domain-containing p 0.426 0.570 0.683 1.1e-34
TAIR|locus:2042501188 LBD14 "LOB domain-containing p 0.417 0.526 0.676 1.7e-34
TAIR|locus:2050951 LBD18 "LOB domain-containing protein 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 126/177 (71%), Positives = 144/177 (81%)

Query:    34 PCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVV 93
             PCGACKFLRRKCVPGCIFAPYFDSEQG+A+FAAVHKVFGASNVSKLLLHIPVH+R DAVV
Sbjct:    37 PCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVV 96

Query:    94 TICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLELXXXXXXXXXQNQ- 152
             TICYEAQAR+RDP+YGCVAHIFALQQQVVNLQAE+SYLQAHLA+LEL           Q 
Sbjct:    97 TICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQTRPQPMPQP 156

Query:   153 ----MTAPP-LSISGLP-SASSMPATYDLSTLFDPMVQPAPWAMQQRQ-MDPR-QFG 201
                  T PP L+I+ LP S S +P+TYDL+++FD     + WA QQR+ +DPR Q+G
Sbjct:   157 QPLFFTPPPPLAITDLPASVSPLPSTYDLASIFDQTTSSSAWATQQRRFIDPRHQYG 213




GO:0005634 "nucleus" evidence=ISM;IDA
GO:0010089 "xylem development" evidence=RCA;IMP
GO:0007155 "cell adhesion" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0010311 "lateral root formation" evidence=IMP
TAIR|locus:2126881 JLO "JAGGED LATERAL ORGANS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050862 LBD19 "LOB domain-containing protein 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126866 LBD31 "LOB domain-containing protein 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053807 LBD16 "lateral organ boundaries-domain 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079354 LBD20 "LOB domain-containing protein 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085420 LBD29 "lateral organ boundaries-domain 29" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053813 ASL15 "ASYMMETRIC LEAVES 2-like 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152820 LBD33 "LOB domain-containing protein 33" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042501 LBD14 "LOB domain-containing protein 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O22131LBD18_ARATHNo assigned EC number0.65480.83540.7557yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
eugene3.00140160
hypothetical protein (246 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
pfam03195101 pfam03195, DUF260, Protein of unknown function DUF 4e-55
COG4907595 COG4907, COG4907, Predicted membrane protein [Func 8e-04
COG1512271 COG1512, COG1512, Beta-propeller domains of methan 0.001
pfam12810248 pfam12810, Gly_rich, Glycine rich protein 0.002
>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260 Back     alignment and domain information
 Score =  171 bits (436), Expect = 4e-55
 Identities = 62/102 (60%), Positives = 77/102 (75%), Gaps = 1/102 (0%)

Query: 34  PCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVV 93
           PC ACK LRRKC P C+ APYF +EQ  A FA VHK+FGASNV+KLL  +P  +R DA+ 
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFPAEQ-PARFANVHKLFGASNVTKLLKALPPEQRDDAMR 59

Query: 94  TICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHL 135
           ++ YEA AR RDPVYGCV  I++LQQQ+  LQAEL+ ++A L
Sbjct: 60  SLLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101


Length = 101

>gnl|CDD|227244 COG4907, COG4907, Predicted membrane protein [Function unknown] Back     alignment and domain information
>gnl|CDD|224429 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only] Back     alignment and domain information
>gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 237
PF03195101 DUF260: Protein of unknown function DUF260; InterP 100.0
COG3416233 Uncharacterized protein conserved in bacteria [Fun 84.47
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function Back     alignment and domain information
Probab=100.00  E-value=2.6e-50  Score=317.95  Aligned_cols=101  Identities=57%  Similarity=1.030  Sum_probs=99.2

Q ss_pred             CChhhHHhhhCCCCCCccCCCCCchhhHHHHHHHHHHhccchHHHHHhcCCCcChHHHHHHHHHHHhhcccCCCCccHHH
Q 036534           34 PCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAH  113 (237)
Q Consensus        34 ~CAACK~lRRkC~~~CifAPYFPadq~~~~F~~vHKVFG~SNV~KmL~~lp~~~R~dAv~SLvYEA~aR~rDPVyGCvG~  113 (237)
                      +|||||||||||+++|+||||||+++ +++|++||||||++||+|||+++|+++|+++|+||+|||++|++||||||+|+
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~-~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~   79 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQ-PQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGI   79 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhH-HHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHH
Confidence            69999999999999999999999998 79999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 036534          114 IFALQQQVVNLQAELSYLQAHL  135 (237)
Q Consensus       114 I~~Lq~Qi~~lq~EL~~~q~~L  135 (237)
                      |+.|+|||+++++||+.++++|
T Consensus        80 i~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   80 ISQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHccC
Confidence            9999999999999999999875



The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00