Citrus Sinensis ID: 036534
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 237 | ||||||
| 255541332 | 247 | LOB domain-containing protein, putative | 0.848 | 0.813 | 0.811 | 6e-86 | |
| 296089158 | 264 | unnamed protein product [Vitis vinifera] | 0.860 | 0.772 | 0.775 | 3e-82 | |
| 224127394 | 246 | predicted protein [Populus trichocarpa] | 0.856 | 0.825 | 0.808 | 5e-82 | |
| 225453923 | 251 | PREDICTED: LOB domain-containing protein | 0.860 | 0.812 | 0.775 | 6e-82 | |
| 224063879 | 217 | predicted protein [Populus trichocarpa] | 0.793 | 0.866 | 0.805 | 6e-80 | |
| 449454632 | 240 | PREDICTED: LOB domain-containing protein | 0.814 | 0.804 | 0.784 | 2e-78 | |
| 356506343 | 251 | PREDICTED: LOB domain-containing protein | 0.843 | 0.796 | 0.702 | 3e-73 | |
| 356496402 | 247 | PREDICTED: LOB domain-containing protein | 0.852 | 0.817 | 0.683 | 4e-72 | |
| 297824591 | 260 | hypothetical protein ARALYDRAFT_483677 [ | 0.835 | 0.761 | 0.651 | 3e-70 | |
| 30690020 | 262 | LOB domain-containing protein 18 [Arabid | 0.835 | 0.755 | 0.654 | 1e-67 |
| >gi|255541332|ref|XP_002511730.1| LOB domain-containing protein, putative [Ricinus communis] gi|223548910|gb|EEF50399.1| LOB domain-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 177/218 (81%), Positives = 188/218 (86%), Gaps = 17/218 (7%)
Query: 37 ACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTIC 96
ACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTIC
Sbjct: 30 ACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTIC 89
Query: 97 YEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLELPSPPPPPPSQNQMTAP 156
YEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLELPSPPPPPP Q+ + P
Sbjct: 90 YEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLELPSPPPPPPPQSLVPPP 149
Query: 157 PLSISGLPSASSMPATYDLSTLFDPMVQPAP-WAMQQRQMDPRQF--------------- 200
PLSI+ LPSASS+PATYDLS+LFDPM QP+P WAMQQRQMDPRQF
Sbjct: 150 PLSIADLPSASSVPATYDLSSLFDPMTQPSPSWAMQQRQMDPRQFGGGSSLGSSSATIGG 209
Query: 201 -GGGDLQAMARELLHRQGSPPPGSMPCTDASSSPSLSK 237
GGGDL ++ARELLHR SPP GS+PC+ SSPS+SK
Sbjct: 210 CGGGDLHSLARELLHRHASPPRGSVPCSGTLSSPSISK 247
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089158|emb|CBI38861.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224127394|ref|XP_002320063.1| predicted protein [Populus trichocarpa] gi|222860836|gb|EEE98378.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225453923|ref|XP_002279521.1| PREDICTED: LOB domain-containing protein 18 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224063879|ref|XP_002301295.1| predicted protein [Populus trichocarpa] gi|222843021|gb|EEE80568.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449454632|ref|XP_004145058.1| PREDICTED: LOB domain-containing protein 18-like [Cucumis sativus] gi|449472972|ref|XP_004153747.1| PREDICTED: LOB domain-containing protein 18-like [Cucumis sativus] gi|449527513|ref|XP_004170755.1| PREDICTED: LOB domain-containing protein 18-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356506343|ref|XP_003521944.1| PREDICTED: LOB domain-containing protein 18-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356496402|ref|XP_003517057.1| PREDICTED: LOB domain-containing protein 18-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297824591|ref|XP_002880178.1| hypothetical protein ARALYDRAFT_483677 [Arabidopsis lyrata subsp. lyrata] gi|297326017|gb|EFH56437.1| hypothetical protein ARALYDRAFT_483677 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|30690020|ref|NP_850436.1| LOB domain-containing protein 18 [Arabidopsis thaliana] gi|27805494|sp|O22131.2|LBD18_ARATH RecName: Full=LOB domain-containing protein 18; AltName: Full=ASYMMETRIC LEAVES 2-like protein 20; Short=AS2-like protein 20 gi|17227164|gb|AAL38036.1|AF447891_1 LOB DOMAIN 18 [Arabidopsis thaliana] gi|20196916|gb|AAB82622.2| expressed protein [Arabidopsis thaliana] gi|106879179|gb|ABF82619.1| At2g45420 [Arabidopsis thaliana] gi|219807116|dbj|BAH10564.1| ASYMMETRIC LEAVES2-like 20 protein [Arabidopsis thaliana] gi|330255457|gb|AEC10551.1| LOB domain-containing protein 18 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 237 | ||||||
| TAIR|locus:2050951 | 262 | LBD18 "LOB domain-containing p | 0.708 | 0.641 | 0.711 | 2.7e-61 | |
| TAIR|locus:2126881 | 228 | JLO "JAGGED LATERAL ORGANS" [A | 0.843 | 0.877 | 0.613 | 1.7e-59 | |
| TAIR|locus:2050862 | 191 | LBD19 "LOB domain-containing p | 0.447 | 0.554 | 0.754 | 5.7e-43 | |
| TAIR|locus:2126866 | 220 | LBD31 "LOB domain-containing p | 0.675 | 0.727 | 0.560 | 1.5e-42 | |
| TAIR|locus:2053807 | 245 | LBD16 "lateral organ boundarie | 0.578 | 0.559 | 0.624 | 1.2e-40 | |
| TAIR|locus:2079354 | 273 | LBD20 "LOB domain-containing p | 0.430 | 0.373 | 0.803 | 1.8e-39 | |
| TAIR|locus:2085420 | 218 | LBD29 "lateral organ boundarie | 0.434 | 0.472 | 0.737 | 1.8e-39 | |
| TAIR|locus:2053813 | 244 | ASL15 "ASYMMETRIC LEAVES 2-lik | 0.417 | 0.405 | 0.707 | 1.3e-36 | |
| TAIR|locus:2152820 | 177 | LBD33 "LOB domain-containing p | 0.426 | 0.570 | 0.683 | 1.1e-34 | |
| TAIR|locus:2042501 | 188 | LBD14 "LOB domain-containing p | 0.417 | 0.526 | 0.676 | 1.7e-34 |
| TAIR|locus:2050951 LBD18 "LOB domain-containing protein 18" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 126/177 (71%), Positives = 144/177 (81%)
Query: 34 PCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVV 93
PCGACKFLRRKCVPGCIFAPYFDSEQG+A+FAAVHKVFGASNVSKLLLHIPVH+R DAVV
Sbjct: 37 PCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVV 96
Query: 94 TICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLATLELXXXXXXXXXQNQ- 152
TICYEAQAR+RDP+YGCVAHIFALQQQVVNLQAE+SYLQAHLA+LEL Q
Sbjct: 97 TICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQTRPQPMPQP 156
Query: 153 ----MTAPP-LSISGLP-SASSMPATYDLSTLFDPMVQPAPWAMQQRQ-MDPR-QFG 201
T PP L+I+ LP S S +P+TYDL+++FD + WA QQR+ +DPR Q+G
Sbjct: 157 QPLFFTPPPPLAITDLPASVSPLPSTYDLASIFDQTTSSSAWATQQRRFIDPRHQYG 213
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| TAIR|locus:2126881 JLO "JAGGED LATERAL ORGANS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2050862 LBD19 "LOB domain-containing protein 19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2126866 LBD31 "LOB domain-containing protein 31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2053807 LBD16 "lateral organ boundaries-domain 16" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2079354 LBD20 "LOB domain-containing protein 20" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2085420 LBD29 "lateral organ boundaries-domain 29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2053813 ASL15 "ASYMMETRIC LEAVES 2-like 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2152820 LBD33 "LOB domain-containing protein 33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2042501 LBD14 "LOB domain-containing protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| eugene3.00140160 | hypothetical protein (246 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 237 | |||
| pfam03195 | 101 | pfam03195, DUF260, Protein of unknown function DUF | 4e-55 | |
| COG4907 | 595 | COG4907, COG4907, Predicted membrane protein [Func | 8e-04 | |
| COG1512 | 271 | COG1512, COG1512, Beta-propeller domains of methan | 0.001 | |
| pfam12810 | 248 | pfam12810, Gly_rich, Glycine rich protein | 0.002 |
| >gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260 | Back alignment and domain information |
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Score = 171 bits (436), Expect = 4e-55
Identities = 62/102 (60%), Positives = 77/102 (75%), Gaps = 1/102 (0%)
Query: 34 PCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVV 93
PC ACK LRRKC P C+ APYF +EQ A FA VHK+FGASNV+KLL +P +R DA+
Sbjct: 1 PCAACKHLRRKCPPDCVLAPYFPAEQ-PARFANVHKLFGASNVTKLLKALPPEQRDDAMR 59
Query: 94 TICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHL 135
++ YEA AR RDPVYGCV I++LQQQ+ LQAEL+ ++A L
Sbjct: 60 SLLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101
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Length = 101 |
| >gnl|CDD|227244 COG4907, COG4907, Predicted membrane protein [Function unknown] | Back alignment and domain information |
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| >gnl|CDD|224429 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only] | Back alignment and domain information |
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| >gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 237 | |||
| PF03195 | 101 | DUF260: Protein of unknown function DUF260; InterP | 100.0 | |
| COG3416 | 233 | Uncharacterized protein conserved in bacteria [Fun | 84.47 |
| >PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function | Back alignment and domain information |
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Probab=100.00 E-value=2.6e-50 Score=317.95 Aligned_cols=101 Identities=57% Similarity=1.030 Sum_probs=99.2
Q ss_pred CChhhHHhhhCCCCCCccCCCCCchhhHHHHHHHHHHhccchHHHHHhcCCCcChHHHHHHHHHHHhhcccCCCCccHHH
Q 036534 34 PCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAH 113 (237)
Q Consensus 34 ~CAACK~lRRkC~~~CifAPYFPadq~~~~F~~vHKVFG~SNV~KmL~~lp~~~R~dAv~SLvYEA~aR~rDPVyGCvG~ 113 (237)
+|||||||||||+++|+||||||+++ +++|++||||||++||+|||+++|+++|+++|+||+|||++|++||||||+|+
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~-~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~ 79 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQ-PQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGI 79 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhH-HHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHH
Confidence 69999999999999999999999998 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036534 114 IFALQQQVVNLQAELSYLQAHL 135 (237)
Q Consensus 114 I~~Lq~Qi~~lq~EL~~~q~~L 135 (237)
|+.|+|||+++++||+.++++|
T Consensus 80 i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 80 ISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999875
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The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger []. |
| >COG3416 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00