Citrus Sinensis ID: 036544

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNAVN
cccccccHHHHHHHHHccccEEEEEccccHHHHHHHHHcccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHcccccccEEEEcccccccccccHHHHHHHHccEEEccccccHHHHHHHHHHccccEEccHHHHHHHHHcccccccccccEEEEEcccccHHHHHHHHHHcccEEEEEEcccccccccccccccHHHccccHHHHHHHHHcccccccccccEEEEccccccccccccccEEEEEEEEcHHcHHHcccccccHHHcccccccccccEEEEcccccEEEEcccccEEEcccccccHHHHHHHHHccccccEEEEEEccccccccEEEEEEEEEccccccccHHHHHHHHHccccccccccEEEEcccccccccccccHHHHHHHHHHcc
cccccccHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHcccccccccccccccccEEEEEccccccccccEEEccHHHHHHHHHHHHHcccccccEEEEEEccHccccccHHHHHHHHcccEEEEccccHHHHHHHHHHccccEcccHHHHHHHHHHccccccccccEEEEEccccccHHHHHHHHHcccEEEEEEccccccccEEEccccHHHHcccHHHHHHHHcccccccccccEEEEEcccccccccccccEEEEEEEEcccccccccccHHHHHHHEcccccEEEEEEEEEcccccEEEEEEHHHcEEEccEEEcHHHHHHHHcccccEEEEEEEEEEEcccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHcc
nviqrldhKRVSVLLHHSESKLLFVDYQSSPLALAAlslfpsntilpkpvlihddvsatssptvghpnfkwvqpesewdpmalnytsgttsspkgvvhcHRGLFIITVSSlidwripnqpvflwtlpmfhengwsyswgmaavggtniclrkvdVPIIYSVIKHHGVTHICGALVVLNmlssspstkpldrpvkiltsgasppaaVLLRTESLGFvvshsygltetagFVVSCAWKSQWNTLADTERARLKARQGvrtigladmdvvhpetgmsvkhdgqsqgeivFRSGsimlgylkdqegsslcmrdndwfytgdigvvhsdgyleikdRSKDViisggenissaEVESVLYMNPAINEVALVAQRdkfwgkrpcafvslkwelskkptEEAIIEFCRARlphymahksviiedelpktatgkIQKFVLREIVNAVN
nviqrldhkrvsVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKarqgvrtigladMDVVHPETgmsvkhdgqsqGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFvslkwelskkpTEEAIIEFCRARLPHYMAHKsviiedelpktatgkiqkfVLREIVNAVN
NVIQRLDHKRVSVLLHHSESKLLFVDYQssplalaalslfpsNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNAVN
*********RVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSA****TVGHPNFKWVQPESEWDPMALNYTSGTT*SPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNML***********************AAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVH***************EIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVN***
NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNA**
NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNAVN
*VIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIV****
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNAVN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query439 2.2.26 [Sep-21-2011]
Q9FFE6552 Probable acyl-activating yes no 0.981 0.780 0.617 1e-166
Q9FFE9550 Probable acyl-activating no no 0.981 0.783 0.608 1e-164
Q9LPK6550 Probable acyl-activating no no 0.995 0.794 0.589 1e-158
Q9LPK7549 Probable acyl-activating no no 0.997 0.797 0.591 1e-157
Q9LQS1544 Probable acyl-activating no no 0.979 0.790 0.587 1e-156
O80658545 Probable acyl-activating no no 0.993 0.8 0.573 1e-153
F4HUK6556 Probable acyl-activating no no 0.968 0.764 0.451 1e-111
Q9C8D4572 Butyrate--CoA ligase AAE1 no no 0.986 0.756 0.454 1e-110
Q9SEY5603 Probable acyl-activating no no 0.970 0.706 0.470 1e-108
Q8VZF1569 Acetate/butyrate--CoA lig no no 0.958 0.739 0.449 1e-106
>sp|Q9FFE6|AAE5_ARATH Probable acyl-activating enzyme 5, peroxisomal OS=Arabidopsis thaliana GN=AAE5 PE=2 SV=1 Back     alignment and function desciption
 Score =  584 bits (1505), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 278/450 (61%), Positives = 344/450 (76%), Gaps = 19/450 (4%)

Query: 1   NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATS 60
           N+  RLD + VSVLL H  SKLLFVD  S  LA+ A+S+  ++   P  V I D      
Sbjct: 94  NINTRLDARTVSVLLRHCGSKLLFVDVFSVDLAVEAISMMTTDP--PILVFIADKEEEGG 151

Query: 61  SPTV----------------GHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLF 104
              V                G  +FKW++PESEWDP+ LNYTSGTTS+PKGVVHCHRG+F
Sbjct: 152 DADVADRTKFSYTYDDLIHRGDLDFKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIF 211

Query: 105 IITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIYSVIKH 164
           ++++ SLIDW +P  PV+LWTLP+FH NGWSY WG+AAVGGTN+CLRK D P+IY +I+ 
Sbjct: 212 VMSIDSLIDWTVPKNPVYLWTLPIFHANGWSYPWGIAAVGGTNVCLRKFDAPLIYRLIRD 271

Query: 165 HGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLT 224
           HGVTH+CGA VVLNMLS++   +PL+RPV ILT+GA PPAAVLLR ES+GFV+SH YGLT
Sbjct: 272 HGVTHMCGAPVVLNMLSATNEFQPLNRPVNILTAGAPPPAAVLLRAESIGFVISHGYGLT 331

Query: 225 ETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGE 284
           ETAG  VSCAWK QWN L  ++RARLKARQGVRT+G  ++DVV PE+G SV+ +G++ GE
Sbjct: 332 ETAGLNVSCAWKPQWNRLPASDRARLKARQGVRTVGFTEIDVVDPESGRSVERNGETVGE 391

Query: 285 IVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENI 344
           IV R  SIMLGYLKD  G+   ++ N WFYTGD+GV+HSDGYLEIKDRSKD+II+GGEN+
Sbjct: 392 IVMRGSSIMLGYLKDPVGTEKALK-NGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENV 450

Query: 345 SSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLP 404
           SS EVE+VLY NPA+NEVA+VA+ D FWG+ PCAFVSLK  L+++PTE  +IE+CR ++P
Sbjct: 451 SSVEVETVLYTNPAVNEVAVVARPDVFWGETPCAFVSLKSGLTQRPTEVEMIEYCRKKMP 510

Query: 405 HYMAHKSVIIEDELPKTATGKIQKFVLREI 434
            YM  K+V   DELPKT+TGK+ KFVLREI
Sbjct: 511 KYMVPKTVSFVDELPKTSTGKVMKFVLREI 540
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -
>sp|Q9FFE9|AAE6_ARATH Probable acyl-activating enzyme 6 OS=Arabidopsis thaliana GN=AAE6 PE=2 SV=1 Back     alignment and function description
>sp|Q9LPK6|AEE9_ARATH Probable acyl-activating enzyme 9 OS=Arabidopsis thaliana GN=AEE9 PE=2 SV=1 Back     alignment and function description
>sp|Q9LPK7|AEE10_ARATH Probable acyl-activating enzyme 10 OS=Arabidopsis thaliana GN=AEE10 PE=2 SV=1 Back     alignment and function description
>sp|Q9LQS1|AAE8_ARATH Probable acyl-activating enzyme 8 OS=Arabidopsis thaliana GN=AAE8 PE=2 SV=1 Back     alignment and function description
>sp|O80658|AAE4_ARATH Probable acyl-activating enzyme 4 OS=Arabidopsis thaliana GN=AEE4 PE=2 SV=1 Back     alignment and function description
>sp|F4HUK6|AAE1_ARATH Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1 Back     alignment and function description
>sp|Q9C8D4|AAE11_ARATH Butyrate--CoA ligase AAE11, peroxisomal OS=Arabidopsis thaliana GN=AAE11 PE=1 SV=1 Back     alignment and function description
>sp|Q9SEY5|AAE2_ARATH Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1 Back     alignment and function description
>sp|Q8VZF1|AEE7_ARATH Acetate/butyrate--CoA ligase AAE7, peroxisomal OS=Arabidopsis thaliana GN=AAE7 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
359476425 588 PREDICTED: medium-chain-fatty-acid--CoA 0.986 0.736 0.674 1e-178
255561466 556 AMP dependent ligase, putative [Ricinus 0.997 0.787 0.653 1e-176
224127758 550 acyl:coa ligase acetate-coa synthetase-l 0.997 0.796 0.648 1e-174
147800064537 hypothetical protein VITISV_042774 [Viti 0.988 0.808 0.666 1e-172
225466183 549 PREDICTED: putative acyl-CoA synthetase 0.988 0.790 0.651 1e-170
224134905 553 predicted protein [Populus trichocarpa] 0.979 0.777 0.660 1e-169
224127933 548 acyl:coa ligase acetate-coa synthetase-l 0.997 0.799 0.633 1e-168
224118022 554 acyl:coa ligase acetate-coa synthetase-l 0.988 0.783 0.644 1e-167
297811775 552 hypothetical protein ARALYDRAFT_488489 [ 0.981 0.780 0.62 1e-166
356500978 549 PREDICTED: medium-chain-fatty-acid--CoA 0.979 0.783 0.641 1e-166
>gi|359476425|ref|XP_002263877.2| PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera] Back     alignment and taxonomy information
 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 301/446 (67%), Positives = 358/446 (80%), Gaps = 13/446 (2%)

Query: 5   RLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTV 64
           RLD K VSVLL HSESKL+FVDYQS PL L +LSLFP ++  P  VLI DD  +  S TV
Sbjct: 136 RLDAKTVSVLLRHSESKLIFVDYQSRPLILESLSLFPPSSQRPLLVLITDDEDSPPS-TV 194

Query: 65  ------------GHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI 112
                       G P FKW++PESEW+PM LNYTSGTTSSPKGVVHCHRG+FI+TV SLI
Sbjct: 195 DFLCTYEDMVGRGDPEFKWIRPESEWNPMILNYTSGTTSSPKGVVHCHRGIFIVTVDSLI 254

Query: 113 DWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICG 172
           DW +P QPV+LWTLPMFH NGWS+ WGMAAVGGTN+CLRK D  +IY  I+ H VTH+CG
Sbjct: 255 DWCVPKQPVYLWTLPMFHANGWSFPWGMAAVGGTNVCLRKFDASVIYEAIRVHRVTHMCG 314

Query: 173 ALVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVS 232
           A VVLNMLS+ P T+PL  PV+ILT+GA PPAA+LLRTES GF+VSH YGLTET G VVS
Sbjct: 315 APVVLNMLSNWPGTEPLKNPVQILTAGAPPPAAILLRTESRGFIVSHGYGLTETGGLVVS 374

Query: 233 CAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSI 292
           C WK +WN L  TERARLK+RQGVRT+G+ ++DV+ P +G+SVK DG S GEIV R G I
Sbjct: 375 CVWKQKWNRLPATERARLKSRQGVRTVGMTEVDVLDPGSGLSVKRDGSSLGEIVLRGGCI 434

Query: 293 MLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESV 352
           MLGYLKD +G+S  + D+ WF+TGD+GV+HSDGYLEIKDRSKDVIISGGEN+SS EVESV
Sbjct: 435 MLGYLKDPKGTSKSLTDDGWFFTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESV 494

Query: 353 LYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSV 412
           LY +PA+NE A+VA+ D FWG+ PCAFVSLK E +++PTE+ I+E+CRAR+PHYM  K+V
Sbjct: 495 LYTHPAVNEAAVVARPDDFWGETPCAFVSLKPERTEQPTEKEIMEYCRARMPHYMVPKTV 554

Query: 413 IIEDELPKTATGKIQKFVLREIVNAV 438
           + E+ELPKT+TGKIQKFVLRE   A+
Sbjct: 555 VFEEELPKTSTGKIQKFVLRETAKAM 580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255561466|ref|XP_002521743.1| AMP dependent ligase, putative [Ricinus communis] gi|223538956|gb|EEF40553.1| AMP dependent ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224127758|ref|XP_002329170.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] gi|222870951|gb|EEF08082.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147800064|emb|CAN64147.1| hypothetical protein VITISV_042774 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225466183|ref|XP_002263801.1| PREDICTED: putative acyl-CoA synthetase YngI-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224134905|ref|XP_002321934.1| predicted protein [Populus trichocarpa] gi|222868930|gb|EEF06061.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224127933|ref|XP_002329213.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] gi|222870994|gb|EEF08125.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224118022|ref|XP_002331538.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] gi|222873762|gb|EEF10893.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297811775|ref|XP_002873771.1| hypothetical protein ARALYDRAFT_488489 [Arabidopsis lyrata subsp. lyrata] gi|297319608|gb|EFH50030.1| hypothetical protein ARALYDRAFT_488489 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356500978|ref|XP_003519307.1| PREDICTED: medium-chain-fatty-acid--CoA ligase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
TAIR|locus:2171402552 AAE5 "acyl activating enzyme 5 0.981 0.780 0.615 4.3e-148
TAIR|locus:2171357550 AT5G16340 [Arabidopsis thalian 0.981 0.783 0.604 3.9e-147
TAIR|locus:2027032550 AT1G21540 [Arabidopsis thalian 0.995 0.794 0.580 6.1e-142
TAIR|locus:2027012549 AT1G21530 [Arabidopsis thalian 0.997 0.797 0.575 1.5e-140
TAIR|locus:2204360544 AT1G75960 [Arabidopsis thalian 0.979 0.790 0.583 3.9e-140
TAIR|locus:2195950545 AAE2 "acyl activating enzyme 2 0.993 0.8 0.557 6.7e-136
TAIR|locus:2057249603 AT2G17650 [Arabidopsis thalian 0.833 0.606 0.509 2.8e-103
TIGR_CMR|SPO_0677542 SPO_0677 "AMP-binding protein" 0.981 0.795 0.467 8.8e-102
TAIR|locus:2030407556 AAE1 "acyl activating enzyme 1 0.979 0.773 0.454 2.3e-101
TAIR|locus:2086122569 AAE7 "acyl-activating enzyme 7 0.872 0.673 0.484 2e-100
TAIR|locus:2171402 AAE5 "acyl activating enzyme 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1446 (514.1 bits), Expect = 4.3e-148, P = 4.3e-148
 Identities = 277/450 (61%), Positives = 339/450 (75%)

Query:     1 NVIQRLDHKRVSVLLHHSESKLLFVDYQXXXXXXXXXXXXXXNTILPKPVLIHD------ 54
             N+  RLD + VSVLL H  SKLLFVD                 T  P  V I D      
Sbjct:    94 NINTRLDARTVSVLLRHCGSKLLFVDV--FSVDLAVEAISMMTTDPPILVFIADKEEEGG 151

Query:    55 --DV------SATSSPTV--GHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLF 104
               DV      S T    +  G  +FKW++PESEWDP+ LNYTSGTTS+PKGVVHCHRG+F
Sbjct:   152 DADVADRTKFSYTYDDLIHRGDLDFKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIF 211

Query:   105 IITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIYSVIKH 164
             ++++ SLIDW +P  PV+LWTLP+FH NGWSY WG+AAVGGTN+CLRK D P+IY +I+ 
Sbjct:   212 VMSIDSLIDWTVPKNPVYLWTLPIFHANGWSYPWGIAAVGGTNVCLRKFDAPLIYRLIRD 271

Query:   165 HGVTHICGALVVLNMLSSSPSTKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLT 224
             HGVTH+CGA VVLNMLS++   +PL+RPV ILT+GA PPAAVLLR ES+GFV+SH YGLT
Sbjct:   272 HGVTHMCGAPVVLNMLSATNEFQPLNRPVNILTAGAPPPAAVLLRAESIGFVISHGYGLT 331

Query:   225 ETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGE 284
             ETAG  VSCAWK QWN L  ++RARLKARQGVRT+G  ++DVV PE+G SV+ +G++ GE
Sbjct:   332 ETAGLNVSCAWKPQWNRLPASDRARLKARQGVRTVGFTEIDVVDPESGRSVERNGETVGE 391

Query:   285 IVFRSGSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENI 344
             IV R  SIMLGYLKD  G+   ++ N WFYTGD+GV+HSDGYLEIKDRSKD+II+GGEN+
Sbjct:   392 IVMRGSSIMLGYLKDPVGTEKALK-NGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENV 450

Query:   345 SSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLP 404
             SS EVE+VLY NPA+NEVA+VA+ D FWG+ PCAFVSLK  L+++PTE  +IE+CR ++P
Sbjct:   451 SSVEVETVLYTNPAVNEVAVVARPDVFWGETPCAFVSLKSGLTQRPTEVEMIEYCRKKMP 510

Query:   405 HYMAHKSVIIEDELPKTATGKIQKFVLREI 434
              YM  K+V   DELPKT+TGK+ KFVLREI
Sbjct:   511 KYMVPKTVSFVDELPKTSTGKVMKFVLREI 540
GO:0003824 "catalytic activity" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0005777 "peroxisome" evidence=IDA
TAIR|locus:2171357 AT5G16340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027032 AT1G21540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027012 AT1G21530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204360 AT1G75960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2195950 AAE2 "acyl activating enzyme 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057249 AT2G17650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0677 SPO_0677 "AMP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TAIR|locus:2030407 AAE1 "acyl activating enzyme 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086122 AAE7 "acyl-activating enzyme 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FFE6AAE5_ARATH6, ., 2, ., 1, ., -0.61770.98170.7807yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.2.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00023414001
SubName- Full=Chromosome undetermined scaffold_30, whole genome shotgun sequence; (549 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
cd12118520 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt 0.0
PRK08162545 PRK08162, PRK08162, acyl-CoA synthetase; Validated 0.0
PLN02479567 PLN02479, PLN02479, acetate-CoA ligase 1e-162
PLN03102579 PLN03102, PLN03102, acyl-activating enzyme; Provis 1e-144
PRK06187521 PRK06187, PRK06187, long-chain-fatty-acid--CoA lig 1e-104
COG0318534 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ 3e-99
cd05915509 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase 3e-96
cd12119517 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth 1e-89
cd05929342 cd05929, BACL_like, Bacterial Bile acid CoA ligase 8e-88
cd05917347 cd05917, FACL_like_2, Uncharacterized subfamily of 7e-79
cd04433338 cd04433, AFD_class_I, Adenylate forming domain, Cl 6e-70
cd05936468 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain 3e-69
PRK08316523 PRK08316, PRK08316, acyl-CoA synthetase; Validated 4e-65
cd05903437 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li 3e-64
cd05912407 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase 6e-64
cd05934421 cd05934, FACL_DitJ_like, Uncharacterized subfamily 2e-61
pfam00501412 pfam00501, AMP-binding, AMP-binding enzyme 7e-59
PRK03640483 PRK03640, PRK03640, O-succinylbenzoic acid--CoA li 6e-58
PRK07656513 PRK07656, PRK07656, long-chain-fatty-acid--CoA lig 2e-57
cd05935430 cd05935, LC_FACS_like, Putative long-chain fatty a 9e-55
PRK07008539 PRK07008, PRK07008, long-chain-fatty-acid--CoA lig 5e-53
cd05926345 cd05926, FACL_fum10p_like, Subfamily of fatty acid 2e-52
cd05941430 cd05941, MCS, Malonyl-CoA synthetase (MCS) 5e-52
PRK06018542 PRK06018, PRK06018, putative acyl-CoA synthetase; 2e-51
cd05911487 cd05911, Firefly_Luc_like, Firefly luciferase of l 1e-50
TIGR01923436 TIGR01923, menE, O-succinylbenzoate-CoA ligase 2e-49
PRK13295547 PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig 8e-49
COG0365528 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat 4e-48
PRK06839496 PRK06839, PRK06839, acyl-CoA synthetase; Validated 8e-48
cd05904504 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) 3e-47
PRK06145497 PRK06145, PRK06145, acyl-CoA synthetase; Validated 7e-47
PRK08314546 PRK08314, PRK08314, long-chain-fatty-acid--CoA lig 6e-45
PRK06188524 PRK06188, PRK06188, acyl-CoA synthetase; Validated 8e-45
TIGR03208538 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate 6e-44
PRK06155542 PRK06155, PRK06155, crotonobetaine/carnitine-CoA l 2e-43
cd05922350 cd05922, FACL_like_6, Uncharacterized subfamily of 2e-43
PLN02246537 PLN02246, PLN02246, 4-coumarate--CoA ligase 3e-43
cd05944359 cd05944, FACL_like_4, Uncharacterized subfamily of 1e-41
PRK07529632 PRK07529, PRK07529, AMP-binding domain protein; Va 4e-41
PRK05605573 PRK05605, PRK05605, long-chain-fatty-acid--CoA lig 8e-41
PRK12583558 PRK12583, PRK12583, acyl-CoA synthetase; Provision 1e-40
PRK08315559 PRK08315, PRK08315, AMP-binding domain protein; Va 3e-40
cd05972430 cd05972, MACS_like, Medium-chain acyl-CoA syntheta 5e-40
PRK09088488 PRK09088, PRK09088, acyl-CoA synthetase; Validated 6e-40
PRK07786542 PRK07786, PRK07786, long-chain-fatty-acid--CoA lig 1e-39
cd05920483 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l 4e-39
cd05919436 cd05919, BCL_like, Benzoate CoA ligase (BCL) and s 1e-37
PRK06710563 PRK06710, PRK06710, long-chain-fatty-acid--CoA lig 1e-37
cd05971439 cd05971, MACS_like_3, Uncharacterized subfamily of 2e-37
PRK06087547 PRK06087, PRK06087, short chain acyl-CoA synthetas 2e-35
PRK08276502 PRK08276, PRK08276, long-chain-fatty-acid--CoA lig 2e-35
PRK05620576 PRK05620, PRK05620, long-chain-fatty-acid--CoA lig 5e-35
cd05907456 cd05907, VL_LC_FACS_like, Long-chain fatty acid Co 7e-35
cd05973440 cd05973, MACS_like_2, Uncharacterized subfamily of 6e-34
PRK13391511 PRK13391, PRK13391, acyl-CoA synthetase; Provision 3e-33
PLN02574560 PLN02574, PLN02574, 4-coumarate--CoA ligase-like 6e-33
PLN02330546 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 7e-32
PRK07059557 PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig 1e-31
cd05923495 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) 1e-31
PRK07787471 PRK07787, PRK07787, acyl-CoA synthetase; Validated 3e-31
PRK07470528 PRK07470, PRK07470, acyl-CoA synthetase; Validated 4e-31
PLN02860563 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase 9e-31
PRK06178567 PRK06178, PRK06178, acyl-CoA synthetase; Validated 2e-30
cd05974433 cd05974, MACS_like_1, Uncharacterized subfamily of 1e-29
PRK05677562 PRK05677, PRK05677, long-chain-fatty-acid--CoA lig 1e-28
PRK13382537 PRK13382, PRK13382, acyl-CoA synthetase; Provision 1e-28
PRK07514504 PRK07514, PRK07514, malonyl-CoA synthase; Validate 1e-28
PRK06164540 PRK06164, PRK06164, acyl-CoA synthetase; Validated 2e-28
PRK07788549 PRK07788, PRK07788, acyl-CoA synthetase; Validated 3e-28
PRK08974560 PRK08974, PRK08974, long-chain-fatty-acid--CoA lig 7e-28
cd05969443 cd05969, MACS_like_4, Uncharacterized subfamily of 1e-27
cd05959506 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 2e-27
TIGR03098517 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form 5e-27
cd05909489 cd05909, AAS_C, C-terminal domain of the acyl-acyl 4e-25
PRK08008517 PRK08008, caiC, putative crotonobetaine/carnitine- 4e-25
cd05924365 cd05924, FACL_like_5, Uncharacterized subfamily of 5e-25
PRK08751560 PRK08751, PRK08751, putative long-chain fatty acyl 3e-24
COG1021542 COG1021, EntE, Peptide arylation enzymes [Secondar 5e-24
TIGR02275526 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP 5e-24
PRK13390501 PRK13390, PRK13390, acyl-CoA synthetase; Provision 6e-24
cd05906560 cd05906, A_NRPS_TubE_like, The adenylation domain 9e-24
cd05958487 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) 2e-23
PRK07867529 PRK07867, PRK07867, acyl-CoA synthetase; Validated 2e-23
PRK12492562 PRK12492, PRK12492, long-chain-fatty-acid--CoA lig 2e-23
PRK12406509 PRK12406, PRK12406, long-chain-fatty-acid--CoA lig 5e-23
PRK13388540 PRK13388, PRK13388, acyl-CoA synthetase; Provision 8e-23
TIGR03205541 TIGR03205, pimA, dicarboxylate--CoA ligase PimA 1e-22
cd05930445 cd05930, A_NRPS, The adenylation domain of nonribo 3e-22
PRK05852534 PRK05852, PRK05852, acyl-CoA synthetase; Validated 3e-22
cd05945447 cd05945, DltA, D-alanine:D-alanyl carrier protein 3e-22
cd05932504 cd05932, LC_FACS_bac, Bacterial long-chain fatty a 3e-22
cd05928530 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co 8e-22
COG1022613 COG1022, FAA1, Long-chain acyl-CoA synthetases (AM 9e-22
cd05940444 cd05940, FATP_FACS, Fatty acid transport proteins 5e-21
PRK09029458 PRK09029, PRK09029, O-succinylbenzoic acid--CoA li 9e-21
cd05918447 cd05918, A_NRPS_SidN3_like, The adenylation (A) do 2e-20
PRK07798533 PRK07798, PRK07798, acyl-CoA synthetase; Validated 9e-20
PRK04319570 PRK04319, PRK04319, acetyl-CoA synthetase; Provisi 1e-19
cd05931547 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) 1e-19
PRK086331146 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola 6e-19
cd05927539 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty 1e-18
cd05968474 cd05968, AACS_like, Uncharacterized acyl-CoA synth 3e-18
PRK10946536 PRK10946, entE, enterobactin synthase subunit E; P 4e-18
cd05933594 cd05933, ACSBG_like, Bubblegum-like very long-chai 6e-18
PRK07638487 PRK07638, PRK07638, acyl-CoA synthetase; Validated 9e-18
PRK07445452 PRK07445, PRK07445, O-succinylbenzoic acid--CoA li 2e-17
cd05966602 cd05966, ACS, Acetyl-CoA synthetase (also known as 6e-17
PRK05857540 PRK05857, PRK05857, acyl-CoA synthetase; Validated 8e-17
PLN02387696 PLN02387, PLN02387, long-chain-fatty-acid-CoA liga 2e-16
cd05970537 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s 4e-16
cd05967607 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) 8e-16
TIGR02262508 TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil 4e-15
cd05908499 cd05908, A_NRPS_MycA_like, The adenylation domain 8e-15
TIGR02188625 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase 1e-14
cd05914448 cd05914, FACL_like_3, Uncharacterized subfamily of 3e-14
PLN02430660 PLN02430, PLN02430, long-chain-fatty-acid-CoA liga 9e-14
cd12117474 cd12117, A_NRPS_Srf_like, The adenylation domain o 9e-14
PRK068141140 PRK06814, PRK06814, acylglycerophosphoethanolamine 2e-13
cd05937468 cd05937, FATP_chFAT1_like, Uncharacterized subfami 3e-13
PRK08308414 PRK08308, PRK08308, acyl-CoA synthetase; Validated 7e-13
PLN02736651 PLN02736, PLN02736, long-chain acyl-CoA synthetase 1e-12
cd12116438 cd12116, A_NRPS_Ta1_like, The adenylation domain o 2e-12
TIGR01733409 TIGR01733, AA-adenyl-dom, amino acid adenylation d 4e-12
cd12114476 cd12114, A_NRPS_TlmIV_like, The adenylation domain 2e-11
PRK13383516 PRK13383, PRK13383, acyl-CoA synthetase; Provision 3e-11
COG1020642 COG1020, EntF, Non-ribosomal peptide synthetase mo 5e-11
PRK09192579 PRK09192, PRK09192, acyl-CoA synthetase; Validated 1e-10
PRK05851525 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c 2e-10
cd12115449 cd12115, A_NRPS_Sfm_like, The adenylation domain o 3e-10
PRK07824358 PRK07824, PRK07824, O-succinylbenzoic acid--CoA li 6e-10
PRK00174637 PRK00174, PRK00174, acetyl-CoA synthetase; Provisi 6e-10
PRK07768545 PRK07768, PRK07768, long-chain-fatty-acid--CoA lig 1e-09
PLN02861660 PLN02861, PLN02861, long-chain-fatty-acid-CoA liga 3e-09
PRK12316 5163 PRK12316, PRK12316, peptide synthase; Provisional 8e-09
PRK12316 5163 PRK12316, PRK12316, peptide synthase; Provisional 1e-08
PLN02654666 PLN02654, PLN02654, acetate-CoA ligase 2e-08
TIGR01734502 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho 2e-08
PRK05691 4334 PRK05691, PRK05691, peptide synthase; Validated 1e-07
PRK12316 5163 PRK12316, PRK12316, peptide synthase; Provisional 2e-07
TIGR02316628 TIGR02316, propion_prpE, propionate--CoA ligase 2e-07
PRK12467 3956 PRK12467, PRK12467, peptide synthase; Provisional 2e-07
PRK10524629 PRK10524, prpE, propionyl-CoA synthetase; Provisio 2e-07
pfam1319343 pfam13193, DUF4009, Domain of unknown function (DU 9e-07
PRK12316 5163 PRK12316, PRK12316, peptide synthase; Provisional 2e-06
PLN02614666 PLN02614, PLN02614, long-chain acyl-CoA synthetase 2e-06
cd05910455 cd05910, FACL_like_1, Uncharacterized subfamily of 3e-06
PRK06060 705 PRK06060, PRK06060, acyl-CoA synthetase; Validated 4e-06
PRK04319570 PRK04319, PRK04319, acetyl-CoA synthetase; Provisi 8e-06
COG1022613 COG1022, FAA1, Long-chain acyl-CoA synthetases (AM 1e-05
cd05943616 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac 3e-05
PTZ00237647 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi 5e-05
PRK06334539 PRK06334, PRK06334, long chain fatty acid--[acyl-c 8e-05
PTZ00342746 PTZ00342, PTZ00342, acyl-CoA synthetase; Provision 9e-05
cd05939474 cd05939, hsFATP4_like, Fatty acid transport protei 1e-04
PRK05691 4334 PRK05691, PRK05691, peptide synthase; Validated 2e-04
PRK05691 4334 PRK05691, PRK05691, peptide synthase; Validated 3e-04
PRK12476612 PRK12476, PRK12476, putative fatty-acid--CoA ligas 3e-04
PRK05691 4334 PRK05691, PRK05691, peptide synthase; Validated 7e-04
cd05921559 cd05921, FCS, Feruloyl-CoA synthetase (FCS) 8e-04
cd05966602 cd05966, ACS, Acetyl-CoA synthetase (also known as 0.001
PRK12467 3956 PRK12467, PRK12467, peptide synthase; Provisional 0.001
cd05939474 cd05939, hsFATP4_like, Fatty acid transport protei 0.001
cd05938535 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport 0.001
cd05927539 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty 0.002
PTZ00216700 PTZ00216, PTZ00216, acyl-CoA synthetase; Provision 0.002
cd12117474 cd12117, A_NRPS_Srf_like, The adenylation domain o 0.003
PLN02654666 PLN02654, PLN02654, acetate-CoA ligase 0.003
PRK07769631 PRK07769, PRK07769, long-chain-fatty-acid--CoA lig 0.003
TIGR02372386 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase 0.003
PRK08279600 PRK08279, PRK08279, long-chain-acyl-CoA synthetase 0.004
PRK08279600 PRK08279, PRK08279, long-chain-acyl-CoA synthetase 0.004
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis Back     alignment and domain information 
 Score =  585 bits (1511), Expect = 0.0
 Identities = 230/439 (52%), Positives = 304/439 (69%), Gaps = 15/439 (3%)

Query: 5   RLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTV 64
           RLD   ++ +L+HSE+K+LFVD +   LA  AL+L  +  I+    +I    +A  S   
Sbjct: 87  RLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIID-TEIIVISPAAEDSEEG 145

Query: 65  --------GHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRI 116
                   G P+   + P+ EWDP++LNYTSGTT +PKGVV+ HRG ++  + ++I+W +
Sbjct: 146 DYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEWGM 205

Query: 117 PNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLRKVDVPIIYSVIKHHGVTHICGALVV 176
           P++PV+LWTLPMFH NGW + W + AVGGT++CLRKVD P IY +I+ H VTH+CGA  V
Sbjct: 206 PDRPVYLWTLPMFHCNGWCFPWAITAVGGTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTV 265

Query: 177 LNMLSSSPST--KPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCA 234
           LNML+++P     PL RPV+++T+GA PP AV+ + E LGF V+H YGLTET G +  C 
Sbjct: 266 LNMLANAPEADKLPLPRPVRVMTAGAPPPPAVIKKMEELGFEVTHVYGLTETYGPITVCE 325

Query: 235 WKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIML 294
           WK +W+ L   ERARLKARQGVR +GL ++DVV PET   V  DG++ GEIV R  ++M 
Sbjct: 326 WKPEWDALPAEERARLKARQGVRYVGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMK 385

Query: 295 GYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLY 354
           GY K+ E +        WF++GD+ VVH DGY+EIKDRSKD+IISGGENISS EVE VLY
Sbjct: 386 GYYKNPEATEEAFAGG-WFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLY 444

Query: 355 MNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVII 414
            +PA+ E A+VA+ D+ WG+ PCAFV LK       TEE +IE+CR +L H+   K+V  
Sbjct: 445 KHPAVLEAAVVARPDEKWGETPCAFVVLK--PGASVTEEELIEYCREKLAHFKVPKTVEF 502

Query: 415 EDELPKTATGKIQKFVLRE 433
             ELPKTATGKIQKFVLRE
Sbjct: 503 V-ELPKTATGKIQKFVLRE 520

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase Back     alignment and domain information
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional Back     alignment and domain information
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles Back     alignment and domain information
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles Back     alignment and domain information
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins Back     alignment and domain information
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I Back     alignment and domain information
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD Back     alignment and domain information
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) Back     alignment and domain information
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) Back     alignment and domain information
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme Back     alignment and domain information
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase Back     alignment and domain information
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis Back     alignment and domain information
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) Back     alignment and domain information
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) Back     alignment and domain information
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase Back     alignment and domain information
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed Back     alignment and domain information
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) Back     alignment and domain information
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase Back     alignment and domain information
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase Back     alignment and domain information
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated Back     alignment and domain information
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated Back     alignment and domain information
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) Back     alignment and domain information
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase Back     alignment and domain information
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes Back     alignment and domain information
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) Back     alignment and domain information
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases Back     alignment and domain information
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) Back     alignment and domain information
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like Back     alignment and domain information
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 Back     alignment and domain information
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) Back     alignment and domain information
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase Back     alignment and domain information
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) Back     alignment and domain information
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated Back     alignment and domain information
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) Back     alignment and domain information
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) Back     alignment and domain information
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated Back     alignment and domain information
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) Back     alignment and domain information
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase Back     alignment and domain information
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents Back     alignment and domain information
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) Back     alignment and domain information
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA Back     alignment and domain information
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) Back     alignment and domain information
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) Back     alignment and domain information
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase Back     alignment and domain information
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) Back     alignment and domain information
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes Back     alignment and domain information
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) Back     alignment and domain information
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) Back     alignment and domain information
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) Back     alignment and domain information
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase Back     alignment and domain information
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional Back     alignment and domain information
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) Back     alignment and domain information
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed Back     alignment and domain information
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) Back     alignment and domain information
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein Back     alignment and domain information
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like Back     alignment and domain information
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) Back     alignment and domain information
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family Back     alignment and domain information
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) Back     alignment and domain information
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase Back     alignment and domain information
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) Back     alignment and domain information
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi Back     alignment and domain information
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase Back     alignment and domain information
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase Back     alignment and domain information
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain Back     alignment and domain information
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes Back     alignment and domain information
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae Back     alignment and domain information
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase Back     alignment and domain information
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 Back     alignment and domain information
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated Back     alignment and domain information
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase Back     alignment and domain information
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009) Back     alignment and domain information
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase Back     alignment and domain information
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) Back     alignment and domain information
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins Back     alignment and domain information
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated Back     alignment and domain information
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated Back     alignment and domain information
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated Back     alignment and domain information
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) Back     alignment and domain information
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) Back     alignment and domain information
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins Back     alignment and domain information
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins Back     alignment and domain information
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) Back     alignment and domain information
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) Back     alignment and domain information
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase Back     alignment and domain information
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive yellow protein activation family Back     alignment and domain information
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 439
KOG1176537 consensus Acyl-CoA synthetase [Lipid transport and 100.0
COG0318534 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l 100.0
KOG1177596 consensus Long chain fatty acid acyl-CoA ligase [L 100.0
COG0365528 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l 100.0
PLN03051499 acyl-activating enzyme; Provisional 100.0
PRK07788549 acyl-CoA synthetase; Validated 100.0
PRK07529632 AMP-binding domain protein; Validated 100.0
PTZ00237647 acetyl-CoA synthetase; Provisional 100.0
PRK06334539 long chain fatty acid--[acyl-carrier-protein] liga 100.0
PLN03102579 acyl-activating enzyme; Provisional 100.0
PLN02654666 acetate-CoA ligase 100.0
PLN02860563 o-succinylbenzoate-CoA ligase 100.0
TIGR02316628 propion_prpE propionate--CoA ligase. This family c 100.0
PLN02574560 4-coumarate--CoA ligase-like 100.0
PRK06839496 acyl-CoA synthetase; Validated 100.0
PLN02736651 long-chain acyl-CoA synthetase 100.0
TIGR02188625 Ac_CoA_lig_AcsA acetate--CoA ligase. This model de 100.0
PRK04319570 acetyl-CoA synthetase; Provisional 100.0
PRK00174637 acetyl-CoA synthetase; Provisional 100.0
COG1021542 EntE Peptide arylation enzymes [Secondary metaboli 100.0
PRK13382537 acyl-CoA synthetase; Provisional 100.0
PRK13295547 cyclohexanecarboxylate-CoA ligase; Reviewed 100.0
PRK08314546 long-chain-fatty-acid--CoA ligase; Validated 100.0
PLN02246537 4-coumarate--CoA ligase 100.0
TIGR01217652 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym 100.0
PRK05677562 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK07638487 acyl-CoA synthetase; Validated 100.0
PRK07008539 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK03584655 acetoacetyl-CoA synthetase; Provisional 100.0
PRK06155542 crotonobetaine/carnitine-CoA ligase; Provisional 100.0
PRK07514504 malonyl-CoA synthase; Validated 100.0
PRK10524629 prpE propionyl-CoA synthetase; Provisional 100.0
PRK06060 705 acyl-CoA synthetase; Validated 100.0
PRK07867529 acyl-CoA synthetase; Validated 100.0
PRK03640483 O-succinylbenzoic acid--CoA ligase; Provisional 100.0
PRK09088488 acyl-CoA synthetase; Validated 100.0
PRK07656513 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK05852534 acyl-CoA synthetase; Validated 100.0
PRK08162545 acyl-CoA synthetase; Validated 100.0
TIGR03208538 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. 100.0
PRK07445452 O-succinylbenzoic acid--CoA ligase; Reviewed 100.0
PRK07769631 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK05605573 long-chain-fatty-acid--CoA ligase; Validated 100.0
PLN02330546 4-coumarate--CoA ligase-like 1 100.0
PLN02614666 long-chain acyl-CoA synthetase 100.0
PRK06145497 acyl-CoA synthetase; Validated 100.0
PRK05857540 acyl-CoA synthetase; Validated 100.0
PRK07470528 acyl-CoA synthetase; Validated 100.0
PRK08043718 bifunctional acyl-[acyl carrier protein] synthetas 100.0
PRK06018542 putative acyl-CoA synthetase; Provisional 100.0
TIGR02275527 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot 100.0
PLN02479567 acetate-CoA ligase 100.0
TIGR03098515 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor 100.0
PRK07787471 acyl-CoA synthetase; Validated 100.0
PRK06164540 acyl-CoA synthetase; Validated 100.0
PRK06087547 short chain acyl-CoA synthetase; Reviewed 100.0
PRK08316523 acyl-CoA synthetase; Validated 100.0
PRK07786542 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK09274552 peptide synthase; Provisional 100.0
PRK13388540 acyl-CoA synthetase; Provisional 100.0
PRK06187521 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK05620576 long-chain-fatty-acid--CoA ligase; Validated 100.0
PTZ00342746 acyl-CoA synthetase; Provisional 100.0
PRK08008517 caiC putative crotonobetaine/carnitine-CoA ligase; 100.0
PLN02861660 long-chain-fatty-acid-CoA ligase 100.0
PRK06188524 acyl-CoA synthetase; Validated 100.0
PRK10946536 entE enterobactin synthase subunit E; Provisional 100.0
PLN03052728 acetate--CoA ligase; Provisional 100.0
TIGR03443 1389 alpha_am_amid L-aminoadipate-semialdehyde dehydrog 100.0
PRK08315559 AMP-binding domain protein; Validated 100.0
PRK05851525 long-chain-fatty-acid--[acyl-carrier-protein] liga 100.0
PRK086331146 2-acyl-glycerophospho-ethanolamine acyltransferase 100.0
PRK12492562 long-chain-fatty-acid--CoA ligase; Provisional 100.0
PRK12467 3956 peptide synthase; Provisional 100.0
PRK12476612 putative fatty-acid--CoA ligase; Provisional 100.0
PRK12583558 acyl-CoA synthetase; Provisional 100.0
PRK06178567 acyl-CoA synthetase; Validated 100.0
PRK06710563 long-chain-fatty-acid--CoA ligase; Validated 100.0
PLN02387696 long-chain-fatty-acid-CoA ligase family protein 100.0
PRK08751560 putative long-chain fatty acyl CoA ligase; Provisi 100.0
PRK12316 5163 peptide synthase; Provisional 100.0
PRK10252 1296 entF enterobactin synthase subunit F; Provisional 100.0
TIGR01734502 D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig 100.0
PRK12406509 long-chain-fatty-acid--CoA ligase; Provisional 100.0
PRK13383516 acyl-CoA synthetase; Provisional 100.0
PRK07059557 Long-chain-fatty-acid--CoA ligase; Validated 100.0
KOG1175626 consensus Acyl-CoA synthetase [Lipid transport and 100.0
PRK08276502 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK13390501 acyl-CoA synthetase; Provisional 100.0
TIGR02262508 benz_CoA_lig benzoate-CoA ligase family. Character 100.0
PRK08279600 long-chain-acyl-CoA synthetase; Validated 100.0
COG1022613 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) 100.0
PRK12316 5163 peptide synthase; Provisional 100.0
PRK12467 3956 peptide synthase; Provisional 100.0
PRK13391511 acyl-CoA synthetase; Provisional 100.0
PRK09029458 O-succinylbenzoic acid--CoA ligase; Provisional 100.0
PRK05691 4334 peptide synthase; Validated 100.0
KOG1256691 consensus Long-chain acyl-CoA synthetases (AMP-for 100.0
PRK04813503 D-alanine--poly(phosphoribitol) ligase subunit 1; 100.0
TIGR03205541 pimA dicarboxylate--CoA ligase PimA. PimA, a membe 100.0
PRK068141140 acylglycerophosphoethanolamine acyltransferase; Pr 100.0
PLN02430660 long-chain-fatty-acid-CoA ligase 100.0
TIGR01923436 menE O-succinylbenzoate-CoA ligase. This model rep 100.0
PRK08974560 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK05691 4334 peptide synthase; Validated 100.0
PRK08180614 feruloyl-CoA synthase; Reviewed 100.0
PRK07824358 O-succinylbenzoic acid--CoA ligase; Provisional 100.0
PRK07798533 acyl-CoA synthetase; Validated 100.0
PTZ00216700 acyl-CoA synthetase; Provisional 100.0
PRK09192579 acyl-CoA synthetase; Validated 100.0
PRK08308414 acyl-CoA synthetase; Validated 100.0
PRK05850578 acyl-CoA synthetase; Validated 100.0
PRK12582624 acyl-CoA synthetase; Provisional 100.0
PRK07868994 acyl-CoA synthetase; Validated 100.0
KOG1180678 consensus Acyl-CoA synthetase [Lipid transport and 100.0
PRK07768545 long-chain-fatty-acid--CoA ligase; Validated 100.0
TIGR01733408 AA-adenyl-dom amino acid adenylation domain. This 100.0
PF00501417 AMP-binding: AMP-binding enzyme; InterPro: IPR0008 100.0
KOG1179649 consensus Very long-chain acyl-CoA synthetase/fatt 100.0
TIGR02372386 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv 100.0
TIGR02155422 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet 100.0
PTZ00297 1452 pantothenate kinase; Provisional 100.0
TIGR03335445 F390_ftsA coenzyme F390 synthetase. This enzyme, c 100.0
COG1020642 EntF Non-ribosomal peptide synthetase modules and 100.0
COG1541438 PaaK Coenzyme F390 synthetase [Coenzyme metabolism 99.97
KOG1178 1032 consensus Non-ribosomal peptide synthetase/alpha-a 99.95
PRK09188365 serine/threonine protein kinase; Provisional 99.91
KOG36281363 consensus Predicted AMP-binding protein [General f 99.82
TIGR02304430 aden_form_hyp probable adenylate-forming enzyme. M 99.81
KOG3628 1363 consensus Predicted AMP-binding protein [General f 99.58
PF1319373 AMP-binding_C: AMP-binding enzyme C-terminal domai 99.45
TIGR03089227 conserved hypothetical protein TIGR03089. This pro 99.23
PF04443365 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR 98.91
PF03321528 GH3: GH3 auxin-responsive promoter; InterPro: IPR0 98.64
PLN02249597 indole-3-acetic acid-amido synthetase 98.17
PLN02247606 indole-3-acetic acid-amido synthetase 97.97
PF1453596 AMP-binding_C_2: AMP-binding enzyme C-terminal dom 97.87
PLN02620612 indole-3-acetic acid-amido synthetase 97.69
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-76  Score=567.81  Aligned_cols=415  Identities=38%  Similarity=0.574  Sum_probs=363.2

Q ss_pred             CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCC-------------CCCCCCCCCC
Q 036544            1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVS-------------ATSSPTVGHP   67 (439)
Q Consensus         1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~   67 (439)
                      |+|+++++.++.++++.++|+++|+|..+.+.+.++.....     ..++++.....             ...+.....+
T Consensus       101 ~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~-----~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (537)
T KOG1176|consen  101 PLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA-----LKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLP  175 (537)
T ss_pred             ccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC-----CceEEEecccCccccccccccccchhhccccCCC
Confidence            78999999999999999999999999999999988876654     33444443211             1111122222


Q ss_pred             CCCCCCCCCCCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhhhcCCCCCCEEEEcCCccchhhhHHHHHHHh-hcce
Q 036544           68 NFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLIDWRIPNQPVFLWTLPMFHENGWSYSWGMAA-VGGT  146 (439)
Q Consensus        68 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~-~g~~  146 (439)
                      ..  ..+...+|++.|+|||||||.||||++||+++..+.......+.+...++.++.+|++|.+|+..++.+.+ .|++
T Consensus       176 ~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~  253 (537)
T KOG1176|consen  176 DG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTT  253 (537)
T ss_pred             cc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCce
Confidence            22  23456699999999999999999999999999999888887788888999999999999999999777555 4555


Q ss_pred             EEEeccCChHHHHHHHHhhCceeeechHHHHHHHhCCC--CCCCCCCCeEEEEeCCCCcHHHHHhhh-hcC-CeeeccCC
Q 036544          147 NICLRKVDVPIIYSVIKHHGVTHICGALVVLNMLSSSP--STKPLDRPVKILTSGASPPAAVLLRTE-SLG-FVVSHSYG  222 (439)
Q Consensus       147 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~~-~~v~~~yG  222 (439)
                      +++.+.++++.+++.|++|++|+++++|.++..|++.+  ...++++++.+.+||+++++++.++++ .++ ..+.++||
T Consensus       254 ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YG  333 (537)
T KOG1176|consen  254 IICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYG  333 (537)
T ss_pred             EEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeec
Confidence            55556789999999999999999999999999999975  668899999999999999999999998 566 89999999


Q ss_pred             ccccCcccccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCccc
Q 036544          223 LTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEG  302 (439)
Q Consensus       223 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~  302 (439)
                      +||++++++.+.+..+          ...+++|.++++. .+.+.++ +|..++++  +.||||++|+.+|.||++||++
T Consensus       334 mTE~~~~~~~~~~~~e----------~k~~svG~~~~g~-~~~v~~e-~g~~l~~~--~~GEI~vrg~~imkGY~~Npea  399 (537)
T KOG1176|consen  334 MTEAGGLITSNDWGPE----------RKPGSVGRLLPGV-RVKVLDE-TGVSLGPN--QTGEICVRGPQVMKGYLKNPEA  399 (537)
T ss_pred             cccccCceeecCCCcc----------CcccccCccccce-EEEeeCC-CCCCCCCC--CceEEEEECcccchhhcCChHH
Confidence            9999988877764332          3346899999965 5656554 99999999  7899999999999999999999


Q ss_pred             ccccccCCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEe
Q 036544          303 SSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSL  382 (439)
Q Consensus       303 ~~~~~~~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  382 (439)
                      |++.|+.+|||+|||+|++|+||+++|.+|.+|+||.+|++|+|.|||++|..||.|.||+||+.+|+.+||.++|+|+.
T Consensus       400 T~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~  479 (537)
T KOG1176|consen  400 TKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVL  479 (537)
T ss_pred             HHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEe
Confidence            99999977999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCHHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHHhh
Q 036544          383 KWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNAV  438 (439)
Q Consensus       383 ~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~~  438 (439)
                      +++..  .++++|.++++++|+.|++|+.++|+++||+|++|||+|+.|++.+.++
T Consensus       480 k~g~~--lte~di~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~  533 (537)
T KOG1176|consen  480 KKGST--LTEKDIIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKL  533 (537)
T ss_pred             cCCCc--CCHHHHHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhc
Confidence            98766  8999999999999999999999999999999999999999999999875

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] Back     alignment and domain information
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] Back     alignment and domain information
>PLN03051 acyl-activating enzyme; Provisional Back     alignment and domain information
>PRK07788 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07529 AMP-binding domain protein; Validated Back     alignment and domain information
>PTZ00237 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>PLN03102 acyl-activating enzyme; Provisional Back     alignment and domain information
>PLN02654 acetate-CoA ligase Back     alignment and domain information
>PLN02860 o-succinylbenzoate-CoA ligase Back     alignment and domain information
>TIGR02316 propion_prpE propionate--CoA ligase Back     alignment and domain information
>PLN02574 4-coumarate--CoA ligase-like Back     alignment and domain information
>PRK06839 acyl-CoA synthetase; Validated Back     alignment and domain information
>PLN02736 long-chain acyl-CoA synthetase Back     alignment and domain information
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase Back     alignment and domain information
>PRK04319 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK00174 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK13382 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed Back     alignment and domain information
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PLN02246 4-coumarate--CoA ligase Back     alignment and domain information
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase Back     alignment and domain information
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK07638 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK03584 acetoacetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional Back     alignment and domain information
>PRK07514 malonyl-CoA synthase; Validated Back     alignment and domain information
>PRK10524 prpE propionyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06060 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07867 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>PRK09088 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK05852 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK08162 acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase Back     alignment and domain information
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed Back     alignment and domain information
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PLN02330 4-coumarate--CoA ligase-like 1 Back     alignment and domain information
>PLN02614 long-chain acyl-CoA synthetase Back     alignment and domain information
>PRK06145 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK05857 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07470 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK06018 putative acyl-CoA synthetase; Provisional Back     alignment and domain information
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase Back     alignment and domain information
>PLN02479 acetate-CoA ligase Back     alignment and domain information
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated Back     alignment and domain information
>PRK07787 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06164 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06087 short chain acyl-CoA synthetase; Reviewed Back     alignment and domain information
>PRK08316 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK09274 peptide synthase; Provisional Back     alignment and domain information
>PRK13388 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PTZ00342 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated Back     alignment and domain information
>PLN02861 long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>PRK06188 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK10946 entE enterobactin synthase subunit E; Provisional Back     alignment and domain information
>PLN03052 acetate--CoA ligase; Provisional Back     alignment and domain information
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase Back     alignment and domain information
>PRK08315 AMP-binding domain protein; Validated Back     alignment and domain information
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>PRK12476 putative fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK12583 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06178 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PLN02387 long-chain-fatty-acid-CoA ligase family protein Back     alignment and domain information
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK10252 entF enterobactin synthase subunit F; Provisional Back     alignment and domain information
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 Back     alignment and domain information
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK13383 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] Back     alignment and domain information
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK13390 acyl-CoA synthetase; Provisional Back     alignment and domain information
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family Back     alignment and domain information
>PRK08279 long-chain-acyl-CoA synthetase; Validated Back     alignment and domain information
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>PRK13391 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] Back     alignment and domain information
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional Back     alignment and domain information
>TIGR03205 pimA dicarboxylate--CoA ligase PimA Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PLN02430 long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>TIGR01923 menE O-succinylbenzoate-CoA ligase Back     alignment and domain information
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>PRK08180 feruloyl-CoA synthase; Reviewed Back     alignment and domain information
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>PRK07798 acyl-CoA synthetase; Validated Back     alignment and domain information
>PTZ00216 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK09192 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK08308 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK05850 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12582 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK07868 acyl-CoA synthetase; Validated Back     alignment and domain information
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] Back     alignment and domain information
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>TIGR01733 AA-adenyl-dom amino acid adenylation domain Back     alignment and domain information
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] Back     alignment and domain information
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] Back     alignment and domain information
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family Back     alignment and domain information
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase Back     alignment and domain information
>PTZ00297 pantothenate kinase; Provisional Back     alignment and domain information
>TIGR03335 F390_ftsA coenzyme F390 synthetase Back     alignment and domain information
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] Back     alignment and domain information
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PRK09188 serine/threonine protein kinase; Provisional Back     alignment and domain information
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only] Back     alignment and domain information
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme Back     alignment and domain information
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only] Back     alignment and domain information
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B Back     alignment and domain information
>TIGR03089 conserved hypothetical protein TIGR03089 Back     alignment and domain information
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria Back     alignment and domain information
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin Back     alignment and domain information
>PLN02249 indole-3-acetic acid-amido synthetase Back     alignment and domain information
>PLN02247 indole-3-acetic acid-amido synthetase Back     alignment and domain information
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B Back     alignment and domain information
>PLN02620 indole-3-acetic acid-amido synthetase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
1ult_A541 Crystal Structure Of Tt0168 From Thermus Thermophil 4e-46
3r44_A517 Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas 1e-43
3a9u_A536 Crystal Structures And Enzymatic Mechanisms Of A Po 4e-30
3tsy_A 979 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr 5e-27
3ipl_A501 Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig 1e-26
4fuq_A503 Crystal Structure Of Apo Matb From Rhodopseudomonas 3e-25
4gxq_A506 Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer 8e-25
4gxr_A503 Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len 8e-25
3g7s_A549 Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li 1e-23
3ivr_A509 Crystal Structure Of Putative Long-Chain-Fatty-Acid 4e-23
4fut_A503 Crystal Structure Of Atp Bound Matb From Rhodopseud 4e-21
3cw8_X504 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb 4e-21
2qvz_X504 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO 5e-21
2qvx_X504 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO 7e-21
1t5d_X504 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl 1e-20
3dlp_X504 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, 1e-20
3nyq_A505 Malonyl-Coa Ligase Ternary Product Complex With Met 4e-20
1t5h_X504 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE 5e-20
3t5b_A396 Crystal Structure Of N-Terminal Domain Of Facl13 Fr 1e-19
1mdb_A539 Crystal Structure Of Dhbe In Complex With Dhb-adeny 2e-19
2d1t_A548 Crystal Structure Of The Thermostable Japanese Fire 3e-19
3qya_A582 Crystal Structure Of A Red-Emitter Mutant Of Lampyr 3e-19
2d1q_A548 Crystal Structure Of The Thermostable Japanese Fire 5e-19
2d1s_A548 Crystal Structure Of The Thermostable Japanese Fire 5e-19
3rg2_A617 Structure Of A Two-Domain Nrps Fusion Protein Conta 3e-18
1md9_A539 Crystal Structure Of Dhbe In Complex With Dhb And A 4e-18
4g37_A555 Structure Of Cross-Linked Firefly Luciferase In Sec 4e-18
3o82_A544 Structure Of Base N-Terminal Domain From Acinetobac 2e-17
3iep_A551 Firefly Luciferase Apo Structure (P41 Form) Length 2e-17
4g36_A555 Photinus Pyralis Luciferase In The Adenylate-Formin 2e-17
1ba3_A550 Firefly Luciferase In Complex With Bromoform Length 2e-17
1ry2_A663 Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe 7e-16
2wd9_A569 Crystal Structure Of Human Acyl-coa Synthetase Medi 2e-15
3b7w_A570 Crystal Structure Of Human Acyl-Coa Synthetase Medi 2e-15
2v7b_A529 Crystal Structures Of A Benzoate Coa Ligase From Bu 5e-15
2p2b_A652 Acetyl-coa Synthetase, V386a Mutation Length = 652 9e-13
2p20_A652 Acetyl-Coa Synthetase, R584a Mutation Length = 652 2e-12
1pg3_A652 Acetyl Coa Synthetase, Acetylated On Lys609 Length 2e-12
2p2m_A652 Acetyl-Coa Synthetase, R194a Mutation Length = 652 2e-12
2p2f_A652 Acetyl-coa Synthetase, Wild-type With Acetate, Amp, 2e-12
2p2q_A652 Acetyl-Coa Synthetase, R584e Mutation Length = 652 7e-12
2p2j_A652 Acetyl-Coa Synthetase, K609a Mutation Length = 652 1e-11
4gr5_A570 Crystal Structure Of Slgn1deltaasub In Complex With 2e-11
3etc_A580 2.1 A Structure Of Acyl-Adenylate Synthetase From M 1e-08
1amu_A563 Phenylalanine Activating Domain Of Gramicidin Synth 4e-08
2vsq_A 1304 Structure Of Surfactin A Synthetase C (Srfa-C), A N 2e-07
3l8c_A521 Structure Of Probable D-Alanine--Poly(Phosphoribito 5e-07
3pbk_A583 Structural And Functional Studies Of Fatty Acyl-Ade 1e-05
3e7w_A511 Crystal Structure Of Dlta: Implications For The Rea 2e-05
4dg8_A 620 Structure Of Pa1221, An Nrps Protein Containing Ade 2e-04
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 Back     alignment and structure 
Iteration: 1

 Score =  182 bits (461), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 138/445 (31%), Positives = 216/445 (48%), Gaps = 33/445 (7%)
Query: 5   RLDHKRVSVLLHHSESKLLFVDYQXXXXXXXXXXXXXX-------NTILPKPVLIHDDVS 57
           RL  K ++ +L+H+E K+L  D                       +   P+  L +++  
Sbjct: 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEAL 164
Query: 58  ATSSPTVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVS-SLIDWR- 115
              +  V  P         E     + YT+GTT  PKGVV+ HR L + +++ SL+D   
Sbjct: 165 GEEADPVRVP---------ERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA 215
Query: 116 IPNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICLR-KVDVPIIYSVIKHHGVTHICGA- 173
           +  + V L  +PMFH N W   +    VG   +    ++D   +  +    GVT   G  
Sbjct: 216 LSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVP 275
Query: 174 ---LVVLNMLSSSP-STKPLDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGF 229
              L + + L S+    K L R   ++  G++ P +++ R E +G  V   YGLTET+  
Sbjct: 276 TVWLALADYLESTGHRLKTLRR---LVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPV 332
Query: 230 VVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRS 289
           VV    KS   +L++ E+  LKA+ G+  I L  + V   E G  V  DG++ GE+  + 
Sbjct: 333 VVQNFVKSHLESLSEEEKLTLKAKTGL-PIPLVRLRVAD-EEGRPVPKDGKALGEVQLKG 390
Query: 290 GSIMLGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEV 349
             I  GY  ++E +   +  + +F TGDI V   +GY+EIKDR KD+I SGGE ISS ++
Sbjct: 391 PWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDL 450
Query: 350 ESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIE-FCRARLPHYMA 408
           E+ L  +P + E A+VA     W +RP A V  + E   KPT E + E   +A    +  
Sbjct: 451 ENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGE---KPTPEELNEHLLKAGFAKWQL 507
Query: 409 HKSVIIEDELPKTATGKIQKFVLRE 433
             + +  +E+P+T+ GK  K  LRE
Sbjct: 508 PDAYVFAEEIPRTSAGKFLKRALRE 532
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 Back     alignment and structure
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 Back     alignment and structure
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 Back     alignment and structure
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 Back     alignment and structure
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 Back     alignment and structure
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 Back     alignment and structure
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 Back     alignment and structure
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 Back     alignment and structure
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 Back     alignment and structure
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 Back     alignment and structure
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 Back     alignment and structure
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 Back     alignment and structure
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 Back     alignment and structure
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 Back     alignment and structure
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 Back     alignment and structure
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 Back     alignment and structure
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 Back     alignment and structure
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 Back     alignment and structure
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 Back     alignment and structure
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 Back     alignment and structure
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 Back     alignment and structure
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 Back     alignment and structure
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 Back     alignment and structure
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 Back     alignment and structure
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 Back     alignment and structure
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 Back     alignment and structure
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 Back     alignment and structure
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 Back     alignment and structure
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 Back     alignment and structure
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 Back     alignment and structure
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 Back     alignment and structure
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 Back     alignment and structure
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 Back     alignment and structure
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 Back     alignment and structure
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 Back     alignment and structure
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 Back     alignment and structure
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 Back     alignment and structure
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 Back     alignment and structure
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 Back     alignment and structure
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 Back     alignment and structure
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 Back     alignment and structure
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 Back     alignment and structure
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 Back     alignment and structure
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 Back     alignment and structure
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 Back     alignment and structure
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 Back     alignment and structure
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 Back     alignment and structure
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 Back     alignment and structure
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing Adenylation And Pcp Domains Length = 620 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
1v25_A541 Long-chain-fatty-acid-COA synthetase; ligase, stru 1e-170
3ipl_A501 2-succinylbenzoate--COA ligase; structural genomic 1e-118
3r44_A517 Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s 1e-114
3ivr_A509 Putative long-chain-fatty-acid COA ligase; structu 1e-110
1t5h_X504 4-chlorobenzoyl COA ligase; adenylate-forming coen 6e-97
4fuq_A503 Malonyl COA synthetase; ANL superfamily, methylma 8e-93
3nyq_A505 Malonyl-COA ligase; A/B topology ababa sandwich be 5e-85
3g7s_A549 Long-chain-fatty-acid--COA ligase (FADD-1); protei 1e-82
2d1s_A548 Luciferase, luciferin 4-monooxygenase; alpha/beta, 6e-82
3rix_A550 Luciferase, luciferin 4-monooxygenase; oxidoreduct 5e-81
3rg2_A617 Enterobactin synthase component E (ENTE), 2,3-DIH 9e-81
1mdb_A539 2,3-dihydroxybenzoate-AMP ligase; adenylation doma 1e-79
2v7b_A529 Benzoate-coenzyme A ligase; benzoate oxidation, be 7e-79
3ni2_A536 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy 4e-78
3o83_A544 Peptide arylation enzyme; ligase, adenylation of 2 3e-75
3tsy_A 979 Fusion protein 4-coumarate--COA ligase 1, resvera 1e-67
3c5e_A570 Acyl-coenzyme A synthetase ACSM2A, mitochondrial; 5e-54
3etc_A580 AMP-binding protein; adenylate-forming acyl-COA sy 6e-44
3gqw_A576 Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen 2e-30
3kxw_A590 Saframycin MX1 synthetase B; fatty acid AMP ligase 4e-29
3t5a_A480 Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C 1e-20
3ite_A562 SIDN siderophore synthetase; ligase, non-ribosomal 3e-15
1ry2_A663 Acetyl-coenzyme A synthetase 1, acyl-activating en 3e-13
1pg4_A652 Acetyl-COA synthetase; AMP-forming, adenylate-form 4e-12
3hgu_A369 EHPF; phenazine, antibiotic, biosynthetic protein; 2e-10
1amu_A563 GRSA, gramicidin synthetase 1; peptide synthetase, 1e-08
1amu_A563 GRSA, gramicidin synthetase 1; peptide synthetase, 3e-05
3fce_A512 D-alanine--poly(phosphoribitol) ligase subunit 1; 1e-08
3fce_A512 D-alanine--poly(phosphoribitol) ligase subunit 1; 2e-06
3e7w_A511 D-alanine--poly(phosphoribitol) ligase subunit 1; 2e-08
3e7w_A511 D-alanine--poly(phosphoribitol) ligase subunit 1; 1e-06
3l8c_A521 D-alanine--poly(phosphoribitol) ligase subunit 1; 3e-07
3l8c_A521 D-alanine--poly(phosphoribitol) ligase subunit 1; 4e-07
2vsq_A 1304 Surfactin synthetase subunit 3; ligase, peptidyl c 3e-07
2vsq_A 1304 Surfactin synthetase subunit 3; ligase, peptidyl c 4e-07
4dg8_A 620 PA1221; ANL superfamily, adenylation domain, pepti 2e-06
4dg8_A620 PA1221; ANL superfamily, adenylation domain, pepti 4e-05
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 Back     alignment and structure
 Score =  487 bits (1256), Expect = e-170
 Identities = 129/440 (29%), Positives = 206/440 (46%), Gaps = 23/440 (5%)

Query: 5   RLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPT- 63
           RL  K ++ +L+H+E K+L  D    PL  A      +     +  ++ D+ +       
Sbjct: 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKT----VQHFVVMDEKAPEGYLAY 160

Query: 64  -----VGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFI--ITVSSLIDWRI 116
                      +      E     + YT+GTT  PKGVV+ HR L +  +  S +    +
Sbjct: 161 EEALGEEADPVRV----PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTAL 216

Query: 117 PNQPVFLWTLPMFHENGWSYSWGMAAVGGTNICL-RKVDVPIIYSVIKHHGVTHICGALV 175
             + V L  +PMFH N W   +    VG   +    ++D   +  +    GVT   G   
Sbjct: 217 SEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPT 276

Query: 176 VLNMLSSSPSTKP--LDRPVKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSC 233
           V   L+    +    L    +++  G++ P +++ R E +G  V   YGLTET+  VV  
Sbjct: 277 VWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQN 336

Query: 234 AWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIM 293
             KS   +L++ E+  LKA+ G+    +  + V   E G  V  DG++ GE+  +   I 
Sbjct: 337 FVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADEE-GRPVPKDGKALGEVQLKGPWIT 394

Query: 294 LGYLKDQEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVL 353
            GY  ++E +   +  + +F TGDI V   +GY+EIKDR KD+I SGGE ISS ++E+ L
Sbjct: 395 GGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENAL 454

Query: 354 YMNPAINEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVI 413
             +P + E A+VA     W +RP A V  + E  K   EE      +A    +    + +
Sbjct: 455 MGHPKVKEAAVVAIPHPKWQERPLAVVVPRGE--KPTPEELNEHLLKAGFAKWQLPDAYV 512

Query: 414 IEDELPKTATGKIQKFVLRE 433
             +E+P+T+ GK  K  LRE
Sbjct: 513 FAEEIPRTSAGKFLKRALRE 532
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 Back     alignment and structure
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 Back     alignment and structure
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 Back     alignment and structure
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 Back     alignment and structure
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 Back     alignment and structure
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 Back     alignment and structure
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 Back     alignment and structure
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 Back     alignment and structure
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 Back     alignment and structure
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 Back     alignment and structure
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 Back     alignment and structure
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 Back     alignment and structure
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 Back     alignment and structure
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 Back     alignment and structure
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 Back     alignment and structure
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 Back     alignment and structure
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 Back     alignment and structure
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 Back     alignment and structure
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 Back     alignment and structure
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 Back     alignment and structure
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 Back     alignment and structure
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 Back     alignment and structure
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 Back     alignment and structure
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 Back     alignment and structure
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 Back     alignment and structure
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 Back     alignment and structure
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 Back     alignment and structure
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 Back     alignment and structure
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 Back     alignment and structure
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 Back     alignment and structure
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 Back     alignment and structure
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 Back     alignment and structure
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 Back     alignment and structure
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 Back     alignment and structure
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
3ni2_A536 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy 100.0
4fuq_A503 Malonyl COA synthetase; ANL superfamily, methylma 100.0
1mdb_A539 2,3-dihydroxybenzoate-AMP ligase; adenylation doma 100.0
3g7s_A549 Long-chain-fatty-acid--COA ligase (FADD-1); protei 100.0
1v25_A541 Long-chain-fatty-acid-COA synthetase; ligase, stru 100.0
3r44_A517 Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s 100.0
2d1s_A548 Luciferase, luciferin 4-monooxygenase; alpha/beta, 100.0
3rix_A550 Luciferase, luciferin 4-monooxygenase; oxidoreduct 100.0
1t5h_X504 4-chlorobenzoyl COA ligase; adenylate-forming coen 100.0
3etc_A580 AMP-binding protein; adenylate-forming acyl-COA sy 100.0
3ipl_A501 2-succinylbenzoate--COA ligase; structural genomic 100.0
3o83_A544 Peptide arylation enzyme; ligase, adenylation of 2 100.0
3ivr_A509 Putative long-chain-fatty-acid COA ligase; structu 100.0
3c5e_A570 Acyl-coenzyme A synthetase ACSM2A, mitochondrial; 100.0
3e7w_A511 D-alanine--poly(phosphoribitol) ligase subunit 1; 100.0
1pg4_A652 Acetyl-COA synthetase; AMP-forming, adenylate-form 100.0
3fce_A512 D-alanine--poly(phosphoribitol) ligase subunit 1; 100.0
3nyq_A505 Malonyl-COA ligase; A/B topology ababa sandwich be 100.0
3rg2_A617 Enterobactin synthase component E (ENTE), 2,3-DIH 100.0
1amu_A563 GRSA, gramicidin synthetase 1; peptide synthetase, 100.0
1ry2_A663 Acetyl-coenzyme A synthetase 1, acyl-activating en 100.0
2v7b_A529 Benzoate-coenzyme A ligase; benzoate oxidation, be 100.0
4gr5_A570 Non-ribosomal peptide synthetase; MBTH-like domain 100.0
3l8c_A521 D-alanine--poly(phosphoribitol) ligase subunit 1; 100.0
3tsy_A 979 Fusion protein 4-coumarate--COA ligase 1, resvera 100.0
4dg8_A 620 PA1221; ANL superfamily, adenylation domain, pepti 100.0
3ite_A562 SIDN siderophore synthetase; ligase, non-ribosomal 100.0
2vsq_A 1304 Surfactin synthetase subunit 3; ligase, peptidyl c 100.0
3kxw_A590 Saframycin MX1 synthetase B; fatty acid AMP ligase 100.0
3gqw_A576 Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen 100.0
4gs5_A358 Acyl-COA synthetase (AMP-forming)/AMP-acid ligase 100.0
3qov_A436 Phenylacetate-coenzyme A ligase; acetyl-COA synthe 100.0
2y4o_A443 Phenylacetate-coenzyme A ligase; phenylacetic acid 100.0
2y27_A437 Phenylacetate-coenzyme A ligase; phenylacetic acid 100.0
3t5a_A480 Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C 100.0
3hgu_A369 EHPF; phenazine, antibiotic, biosynthetic protein; 99.97
3gxs_A109 Phenylacetate-coenzyme A ligase; APC62324.1, struc 99.62
3lax_A109 Phenylacetate-coenzyme A ligase; structural genomi 99.61
4b2g_A609 GH3-1 auxin conjugating enzyme; signaling protein, 98.98
4eql_A581 4-substituted benzoates-glutamate ligase GH3.12; f 98.95
4epl_A581 Jasmonic acid-amido synthetase JAR1; ANL adenylati 98.86
3rix_A 550 Luciferase, luciferin 4-monooxygenase; oxidoreduct 82.2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Back     alignment and structure
Probab=100.00  E-value=3.5e-70  Score=542.91  Aligned_cols=421  Identities=25%  Similarity=0.324  Sum_probs=354.3

Q ss_pred             CcccCCChHHHHHHHhhCCceEEEEeCCCchhHHHHhccCCCCCCCCccEEEccCCCC----CCCCCCCCCCCCCCCCCC
Q 036544            1 NVIQRLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSA----TSSPTVGHPNFKWVQPES   76 (439)
Q Consensus         1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~   76 (439)
                      |||+.++.+++.++++.++++++|++....+.+.+......    . .++.++.....    .++.... ....+....+
T Consensus       103 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  176 (536)
T 3ni2_A          103 AANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD----V-KVMCVDSAPDGCLHFSELTQAD-ENEAPQVDIS  176 (536)
T ss_dssp             ECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHT----C-EEEESSCCCTTCEETHHHHTSC-GGGCCCCCCC
T ss_pred             ccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcC----c-eEEEecCCCCCccCHHHHhhcc-ccccccCCCC
Confidence            79999999999999999999999999988877776554332    1 23332221100    0001111 1111122367


Q ss_pred             CCCCeEEEeccCCCCCCceEEEchHHHHHHHHHhhh----hcCCCCCCEEEEcCCccchhhhHH-HHHHHhhcceEEEec
Q 036544           77 EWDPMALNYTSGTTSSPKGVVHCHRGLFIITVSSLI----DWRIPNQPVFLWTLPMFHENGWSY-SWGMAAVGGTNICLR  151 (439)
Q Consensus        77 ~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~  151 (439)
                      ++|+++|+|||||||.||||+++|+++...+.....    .+.+.++|++++.+|++|.+|+.. ++.++..|+++++.+
T Consensus       177 ~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~  256 (536)
T 3ni2_A          177 PDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP  256 (536)
T ss_dssp             TTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS
T ss_pred             ccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcC
Confidence            889999999999999999999999999877665443    346789999999999999999865 678899999999999


Q ss_pred             cCChHHHHHHHHhhCceeeechHHHHHHHhCCC--CCCCCCCCeEEEEeCCCCcHHHHHhhh-hc-CCeeeccCCccccC
Q 036544          152 KVDVPIIYSVIKHHGVTHICGALVVLNMLSSSP--STKPLDRPVKILTSGASPPAAVLLRTE-SL-GFVVSHSYGLTETA  227 (439)
Q Consensus       152 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~~~~l~~i~~~G~~~~~~~~~~~~-~~-~~~v~~~yG~tE~~  227 (439)
                      .+++..+++.++++++|+++++|+++..|.+..  ....++++|.+++||+++++++.++++ .+ ++++++.||+||++
T Consensus       257 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~  336 (536)
T 3ni2_A          257 KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAG  336 (536)
T ss_dssp             SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGS
T ss_pred             CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccc
Confidence            999999999999999999999999999998876  345678999999999999999999998 45 89999999999998


Q ss_pred             cccccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEEEecCcccccccCCcccccccc
Q 036544          228 GFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKDQEGSSLCM  307 (439)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~  307 (439)
                      .+++.+.......      .....+++|.|+++. +++|+|+++|.+++.|  +.|||+|+|++++.|||++|+.|...|
T Consensus       337 ~~~~~~~~~~~~~------~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~  407 (536)
T 3ni2_A          337 PVLAMCLAFAKEP------FDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICIRGDQIMKGYLNDPEATSRTI  407 (536)
T ss_dssp             SEEEECGGGSSSC------CCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHB
T ss_pred             hhhhcccccCCcc------ccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEEeCcccchhhcCChhHHHhhc
Confidence            7765542111000      011235789999999 9999998899999998  899999999999999999999999999


Q ss_pred             cCCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceEEEEcccCCCCCceeEEEEEeccCCC
Q 036544          308 RDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEVALVAQRDKFWGKRPCAFVSLKWELS  387 (439)
Q Consensus       308 ~~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  387 (439)
                      ..+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++.+++.++++|+..++..
T Consensus       408 ~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~  487 (536)
T 3ni2_A          408 DKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQ  487 (536)
T ss_dssp             CTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred             cCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999987765


Q ss_pred             CCCCHHHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHHhh
Q 036544          388 KKPTEEAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVNAV  438 (439)
Q Consensus       388 ~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~~~  438 (439)
                        .+.++|+++++++|+.|++|+.++++++||+|++|||+|++|++++.++
T Consensus       488 --~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~l  536 (536)
T 3ni2_A          488 --ATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAGI  536 (536)
T ss_dssp             --CCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC----
T ss_pred             --CCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhccC
Confidence              7889999999999999999999999999999999999999999988764
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* Back     alignment and structure
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Back     alignment and structure
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Back     alignment and structure
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Back     alignment and structure
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Back     alignment and structure
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Back     alignment and structure
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A Back     alignment and structure
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Back     alignment and structure
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Back     alignment and structure
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Back     alignment and structure
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* Back     alignment and structure
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 Back     alignment and structure
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Back     alignment and structure
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Back     alignment and structure
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Back     alignment and structure
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Back     alignment and structure
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Back     alignment and structure
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Back     alignment and structure
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Back     alignment and structure
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Back     alignment and structure
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Back     alignment and structure
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A Back     alignment and structure
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Back     alignment and structure
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Back     alignment and structure
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Back     alignment and structure
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Back     alignment and structure
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Back     alignment and structure
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Back     alignment and structure
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} Back     alignment and structure
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Back     alignment and structure
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Back     alignment and structure
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Back     alignment and structure
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Back     alignment and structure
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Back     alignment and structure
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} Back     alignment and structure
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} Back     alignment and structure
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Back     alignment and structure
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Back     alignment and structure
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 439
d1v25a_534 e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 1e-82
d1pg4a_643 e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en 7e-77
d1ry2a_640 e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast 2e-66
d1lcia_541 e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali 4e-66
d1amua_514 e.23.1.1 (A:) Phenylalanine activating domain of g 2e-58
d3cw9a1503 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc 7e-55
d1mdba_536 e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B 5e-52
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  261 bits (668), Expect = 1e-82
 Identities = 131/435 (30%), Positives = 202/435 (46%), Gaps = 11/435 (2%)

Query: 5   RLDHKRVSVLLHHSESKLLFVDYQSSPLALAALSLFPSNTILPKPVLIHDDVSATSSPTV 64
           RL  K ++ +L+H+E K+L  D    PL  A        T+    V+         +   
Sbjct: 98  RLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK--TVQHFVVMDEKAPEGYLAYEE 155

Query: 65  GHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFI--ITVSSLIDWRIPNQPVF 122
                       E     + YT+GTT  PKGVV+ HR L +  +  S +    +  + V 
Sbjct: 156 ALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVV 215

Query: 123 LWTLPMFHENGWSYSWGMAAVGGTNICL-RKVDVPIIYSVIKHHGVTHICGALVVLNMLS 181
           L  +PMFH N W   +    VG   +    ++D   +  +    GVT   G   V   L+
Sbjct: 216 LPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALA 275

Query: 182 SSPSTKPLDRP--VKILTSGASPPAAVLLRTESLGFVVSHSYGLTETAGFVVSCAWKSQW 239
               +         +++  G++ P +++ R E +G  V   YGLTET+  VV    KS  
Sbjct: 276 DYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHL 335

Query: 240 NTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIVFRSGSIMLGYLKD 299
            +L++ E+  LKA+ G   I L  + V   E G  V  DG++ GE+  +   I  GY  +
Sbjct: 336 ESLSEEEKLTLKAKTG-LPIPLVRLRVADEE-GRPVPKDGKALGEVQLKGPWITGGYYGN 393

Query: 300 QEGSSLCMRDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAI 359
           +E +   +  + +F TGDI V   +GY+EIKDR KD+I SGGE ISS ++E+ L  +P +
Sbjct: 394 EEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKV 453

Query: 360 NEVALVAQRDKFWGKRPCAFVSLKWELSKKPTEEAIIEFCRARLPHYMAHKSVIIEDELP 419
            E A+VA     W +RP A V  + E  K   EE      +A    +    + +  +E+P
Sbjct: 454 KEAAVVAIPHPKWQERPLAVVVPRGE--KPTPEELNEHLLKAGFAKWQLPDAYVFAEEIP 511

Query: 420 KTATGKIQKFVLREI 434
           +T+ GK  K  LRE 
Sbjct: 512 RTSAGKFLKRALREQ 526
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 Back     information, alignment and structure
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 Back     information, alignment and structure
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 Back     information, alignment and structure
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 Back     information, alignment and structure
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 Back     information, alignment and structure
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
d1pg4a_643 Acetyl-CoA synthetase {Salmonella enterica [TaxId: 100.0
d1lcia_541 Luciferase {Firefly (Photinus pyralis) [TaxId: 705 100.0
d1v25a_534 Long chain fatty acid-CoA ligase TT0168 {Thermus t 100.0
d1ry2a_640 Acetyl-CoA synthetase {Baker's yeast (Saccharomyce 100.0
d1amua_514 Phenylalanine activating domain of gramicidin synt 100.0
d1mdba_536 Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil 100.0
d3cw9a1503 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId 100.0
d1lcia_ 541 Luciferase {Firefly (Photinus pyralis) [TaxId: 705 87.18
d1amua_ 514 Phenylalanine activating domain of gramicidin synt 82.72
d1pg4a_ 643 Acetyl-CoA synthetase {Salmonella enterica [TaxId: 81.46
d3cw9a1 503 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId 81.45
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=6.5e-66  Score=518.78  Aligned_cols=419  Identities=21%  Similarity=0.262  Sum_probs=342.9

Q ss_pred             CcccCCChHHHHHHHhhCCceEEEEeCCC---------chhHHHHhccCCCCCCCCccEEEccCCCCCCCC---------
Q 036544            1 NVIQRLDHKRVSVLLHHSESKLLFVDYQS---------SPLALAALSLFPSNTILPKPVLIHDDVSATSSP---------   62 (439)
Q Consensus         1 Pl~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   62 (439)
                      ||++.++++++.++|++++++++|+++..         ......+..... ......++++.......+..         
T Consensus       157 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  235 (643)
T d1pg4a_         157 VIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPN-VTSVEHVIVLKRTGSDIDWQEGRDLWWRD  235 (643)
T ss_dssp             ECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTT-CCSCCEEEEECSSCCCCCCCBTTEEEHHH
T ss_pred             ecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccc-cccceEEEEeccCCcccccccccchhhhh
Confidence            78999999999999999999999998642         223333333221 11344555554332211111         


Q ss_pred             --CCCCCCCCCCCCCCCCCCeEEEeccCCCCCCceEEEchHHHHHHHHH-hhhhcCCCCCCEEEEcCCccchhhhHH-HH
Q 036544           63 --TVGHPNFKWVQPESEWDPMALNYTSGTTSSPKGVVHCHRGLFIITVS-SLIDWRIPNQPVFLWTLPMFHENGWSY-SW  138 (439)
Q Consensus        63 --~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~-~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~  138 (439)
                        ....+. ......+++|+++|+|||||||.||||+++|++++..... ....+++.++|++++.+|++|..|+.. ++
T Consensus       236 ~~~~~~~~-~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~  314 (643)
T d1pg4a_         236 LIEKASPE-HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY  314 (643)
T ss_dssp             HHTTSCSC-CCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTH
T ss_pred             hhcccCcc-cCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHH
Confidence              111111 1223357889999999999999999999999997655443 445678899999999999999999876 66


Q ss_pred             HHHhhcceEEEecc----CChHHHHHHHHhhCceeeechHHHHHHHhCCC----CCCCCCCCeEEEEeCCCCcHHHHHhh
Q 036544          139 GMAAVGGTNICLRK----VDVPIIYSVIKHHGVTHICGALVVLNMLSSSP----STKPLDRPVKILTSGASPPAAVLLRT  210 (439)
Q Consensus       139 ~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----~~~~~~~l~~i~~~G~~~~~~~~~~~  210 (439)
                      .+++.|+++++++.    +++..+++.|+++++|+++++|+++..|....    ...+++++|.++++|+++++++.+++
T Consensus       315 ~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~  394 (643)
T d1pg4a_         315 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY  394 (643)
T ss_dssp             HHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHH
T ss_pred             HHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHH
Confidence            78999999999863    48899999999999999999999999998764    45568899999999999999999988


Q ss_pred             h-hc---CCeeeccCCccccCcccccccccccccccchhHHHHhhhccCceeccccccccccCCCCccccCCCCcceeEE
Q 036544          211 E-SL---GFVVSHSYGLTETAGFVVSCAWKSQWNTLADTERARLKARQGVRTIGLADMDVVHPETGMSVKHDGQSQGEIV  286 (439)
Q Consensus       211 ~-~~---~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~iv~~~~~~~~~~~~~~~Gel~  286 (439)
                      . .+   ++++++.||+||++++++......         .....+++|.|++++ +++|+|+ +|.+++.+  +.|||+
T Consensus       395 ~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~---------~~~~~gs~G~p~~g~-~v~ivd~-~g~~~~~g--~~Gel~  461 (643)
T d1pg4a_         395 WKKIGKEKCPVVDTWWQTETGGFMITPLPGA---------IELKAGSATRPFFGV-QPALVDN-EGHPQEGA--TEGNLV  461 (643)
T ss_dssp             HHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT---------CCBCTTCCBSBCTTC-CEEEECT-TCCBCCSS--EEEEEE
T ss_pred             HHHhCCCCceEEEeechhhccceEEecCCCc---------cCCCCCccccccCCC-EEEEECC-CCCCCCCC--ceEEEE
Confidence            7 44   578999999999987765432110         011235789999998 9999998 79999888  899999


Q ss_pred             Eec--CcccccccCCcccccccc--cCCCceecCceEEEcCCCcEEEecccCceeeeCceeecHHHHHHHHhcCcCcceE
Q 036544          287 FRS--GSIMLGYLKDQEGSSLCM--RDNDWFYTGDIGVVHSDGYLEIKDRSKDVIISGGENISSAEVESVLYMNPAINEV  362 (439)
Q Consensus       287 v~~--~~~~~gy~~~~~~~~~~~--~~~g~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  362 (439)
                      |+|  |+++.|||++++.+...+  ..+|||+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+||+|.+|
T Consensus       462 v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~ea  541 (643)
T d1pg4a_         462 ITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEA  541 (643)
T ss_dssp             ECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEE
T ss_pred             EecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceE
Confidence            999  578999999988776554  2378999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcccCCCCCceeEEEEEeccCCCCCCCH---HHHHHHHHhcCCCccccceEEeecccCCCCCCcccHHHHHHHHH
Q 036544          363 ALVAQRDKFWGKRPCAFVSLKWELSKKPTE---EAIIEFCRARLPHYMAHKSVIIEDELPKTATGKIQKFVLREIVN  436 (439)
Q Consensus       363 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~l~~~~~~~l~~~~~p~~~~~v~~lP~t~~GKi~r~~l~~~~~  436 (439)
                      +|++++++.+|+.+++||+++++..  .+.   ++|+++++++|+++++|+.++++++||+|++|||+|+.|++++.
T Consensus       542 aVvg~~d~~~ge~~~a~Vv~~~~~~--~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~  616 (643)
T d1pg4a_         542 AVVGIPHAIKGQAIYAYVTLNHGEE--PSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAA  616 (643)
T ss_dssp             EEEEEEETTTEEEEEEEEEECTTCC--CCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHH
T ss_pred             EEEEEECCCCCeEEEEEEEECCCCC--CCHHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhc
Confidence            9999999999999999999988765  343   58999999999999999999999999999999999999999885
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Back     information, alignment and structure
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Back     information, alignment and structure
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Back     information, alignment and structure
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Back     information, alignment and structure
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Back     information, alignment and structure
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Back     information, alignment and structure
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Back     information, alignment and structure