Citrus Sinensis ID: 036563
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 288 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LVC8 | 288 | 2-methoxy-6-polyprenyl-1, | yes | no | 0.996 | 0.996 | 0.785 | 1e-131 | |
| Q5JNC0 | 294 | 2-methoxy-6-polyprenyl-1, | yes | no | 0.996 | 0.976 | 0.755 | 1e-128 | |
| Q0P5A2 | 330 | 2-methoxy-6-polyprenyl-1, | yes | no | 0.947 | 0.827 | 0.540 | 1e-84 | |
| Q5HYK3 | 327 | 2-methoxy-6-polyprenyl-1, | yes | no | 0.899 | 0.792 | 0.570 | 3e-84 | |
| Q5RBK6 | 327 | 2-methoxy-6-polyprenyl-1, | yes | no | 0.947 | 0.834 | 0.543 | 7e-84 | |
| Q4G064 | 327 | 2-methoxy-6-polyprenyl-1, | yes | no | 0.958 | 0.844 | 0.552 | 1e-82 | |
| Q5ZLL5 | 311 | 2-methoxy-6-polyprenyl-1, | yes | no | 0.899 | 0.832 | 0.557 | 5e-82 | |
| Q4V7R3 | 310 | 2-methoxy-6-polyprenyl-1, | N/A | no | 0.899 | 0.835 | 0.546 | 1e-81 | |
| Q66L51 | 327 | 2-methoxy-6-polyprenyl-1, | yes | no | 0.902 | 0.795 | 0.550 | 3e-81 | |
| Q54VN2 | 314 | 2-methoxy-6-polyprenyl-1, | yes | no | 0.989 | 0.907 | 0.478 | 2e-79 |
| >sp|Q9LVC8|COQ5_ARATH 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Arabidopsis thaliana GN=COQ5 PE=2 SV=1 | Back alignment and function desciption |
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Score = 468 bits (1204), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/289 (78%), Positives = 256/289 (88%), Gaps = 2/289 (0%)
Query: 1 MAVRVVTRNLGSRLLPMLSSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMN 60
MA+R V+R LGSR+L S + LHSHATSFGF+EV EEKS+LV NVF++VA +YD+MN
Sbjct: 1 MALRSVSRRLGSRILNQRSFVASLHSHATSFGFQEVKEEEKSKLVGNVFTNVASSYDIMN 60
Query: 61 DLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120
D+MSGGLHRLWK+RLV KL+PF GMKHLDVAGGTGDVAFRI D V S+KRRALQ V E
Sbjct: 61 DVMSGGLHRLWKERLVGKLSPFAGMKHLDVAGGTGDVAFRIYDAVYSVKRRALQKVDEAS 120
Query: 121 LQEETRIYVCDINPNMLNVGKKRALERGYPD-KSLLWVEGDAEALCFEDSTMDGYTIAFG 179
L EET+IYVCDINPNMLNVGK+RA ERG D KSL+WVEGDAEAL F+D++MDGYTIAFG
Sbjct: 121 L-EETQIYVCDINPNMLNVGKQRAAERGLRDNKSLVWVEGDAEALSFDDNSMDGYTIAFG 179
Query: 180 IRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDR 239
IRNVTHIEKALAEAYRVLKRGGRFLCLELSHV+IPVFK LYD YSF VIP +GEL+AGDR
Sbjct: 180 IRNVTHIEKALAEAYRVLKRGGRFLCLELSHVEIPVFKNLYDLYSFQVIPNLGELIAGDR 239
Query: 240 GSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
SYQYLVESVRRFPPQE+FA+MI+DAGF+KVEYENLVGGVVAIHS +K+
Sbjct: 240 ESYQYLVESVRRFPPQERFASMIADAGFEKVEYENLVGGVVAIHSAIKL 288
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Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0EC: 1 |
| >sp|Q5JNC0|COQ5_ORYSJ 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Oryza sativa subsp. japonica GN=COQ5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1176), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/295 (75%), Positives = 252/295 (85%), Gaps = 8/295 (2%)
Query: 1 MAVRVVTRNLGS----RLL--PMLSSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAK 54
MA+R L S RLL P T+ LHSHATSFG+K+V E+KS+LV NVFSSVA
Sbjct: 1 MALRSAAGRLASSSRRRLLSPPTSIHTAFLHSHATSFGYKQVAEEDKSKLVGNVFSSVAS 60
Query: 55 NYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQ 114
+YDLMNDLMS GLHRLWKDRL+SKLNPFPGMKHLDVAGGTGDVAFR L+ +NS+ RA+Q
Sbjct: 61 SYDLMNDLMSVGLHRLWKDRLISKLNPFPGMKHLDVAGGTGDVAFRALERINSVSHRAMQ 120
Query: 115 DVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL-WVEGDAEALCFEDSTMDG 173
L D++EET+IYVCDINPNMLNVGKKRA ERGY + L W++GDAEAL FED +MDG
Sbjct: 121 GTL-TDIEEETQIYVCDINPNMLNVGKKRASERGYKEGHCLSWIQGDAEALSFEDGSMDG 179
Query: 174 YTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGE 233
YTIAFGIRNVTHIEKAL+EAYRVLKRGGRFLCLELSHVD+P+FKE+YD YSFSVIPA+GE
Sbjct: 180 YTIAFGIRNVTHIEKALSEAYRVLKRGGRFLCLELSHVDVPLFKEIYDVYSFSVIPAVGE 239
Query: 234 LVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
LVAGDR SYQYLVES+RRFP QEKFA MI +AGF++VEYENLVGGVVAIHSGLK+
Sbjct: 240 LVAGDRQSYQYLVESIRRFPNQEKFAQMIQEAGFERVEYENLVGGVVAIHSGLKL 294
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Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q0P5A2|COQ5_BOVIN 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Bos taurus GN=COQ5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 312 bits (800), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 160/296 (54%), Positives = 198/296 (66%), Gaps = 23/296 (7%)
Query: 10 LGSRLLPMLSSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHR 69
LG+RLL + H FGF+ V EEK V VF SVAK YD+MND+MS G+HR
Sbjct: 38 LGARLLSQEKEATETH-----FGFETVSEEEKGGKVYQVFESVAKKYDVMNDMMSLGIHR 92
Query: 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVL------------ 117
+WKD L+ K+ PFPG + LDVAGGTGD+AFR L+ V + +R + L
Sbjct: 93 VWKDLLLWKMRPFPGTQLLDVAGGTGDIAFRFLNYVQAQHQRKQKRQLRAQQNLSWEEIA 152
Query: 118 -----EDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMD 172
E+D + + VCDIN ML +GK++A +GY L W+ GDAE L F+D+ D
Sbjct: 153 RKYQNEEDSLGGSHVMVCDINKEMLKIGKQKARAQGY-KAGLAWILGDAEELPFDDNKFD 211
Query: 173 GYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232
YTIAFGIRNVTHI++AL EA+RVLK GGRFLCLE S V+ P+ LYD YSF VIP +G
Sbjct: 212 VYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNNPLLSRLYDVYSFQVIPVLG 271
Query: 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
E++AGD SYQYLVES+R+FP QE+F MI DAGFQKV YENL G+VAIHSG K+
Sbjct: 272 EVIAGDWKSYQYLVESIRQFPSQEEFKEMIEDAGFQKVTYENLTSGIVAIHSGFKL 327
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Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q5HYK3|COQ5_HUMAN 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Homo sapiens GN=COQ5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 311 bits (797), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 158/277 (57%), Positives = 195/277 (70%), Gaps = 18/277 (6%)
Query: 29 TSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHL 88
T FGF+ V EEK V VF SVAK YD+MND+MS G+HR+WKD L+ K++P PG + L
Sbjct: 52 THFGFETVSEEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMHPLPGTQLL 111
Query: 89 DVAGGTGDVAFRILDTVNSIKRR-------ALQDVLEDDLQEE----------TRIYVCD 131
DVAGGTGD+AFR L+ V S +R A Q++ +++ +E +R+ VCD
Sbjct: 112 DVAGGTGDIAFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCD 171
Query: 132 INPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALA 191
IN ML VGK++AL +GY L WV GDAE L F+D D YTIAFGIRNVTHI++AL
Sbjct: 172 INKEMLKVGKQKALAQGY-RAGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQ 230
Query: 192 EAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRR 251
EA+RVLK GGRFLCLE S V+ P+ LYD YSF VIP +GE++AGD SYQYLVES+RR
Sbjct: 231 EAHRVLKPGGRFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRR 290
Query: 252 FPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
FP QE+F MI DAGF KV YE+L G+VAIHSG K+
Sbjct: 291 FPSQEEFKDMIEDAGFHKVTYESLTSGIVAIHSGFKL 327
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Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q5RBK6|COQ5_PONAB 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Pongo abelii GN=COQ5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (794), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 161/296 (54%), Positives = 200/296 (67%), Gaps = 23/296 (7%)
Query: 10 LGSRLLPMLSSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHR 69
L +RLLP + H FG + V EEK V VF SVAK YD+MND+MS G+HR
Sbjct: 38 LSARLLPQEKRATETH-----FGSETVSEEEKGGKVYQVFESVAKKYDVMNDMMSLGIHR 92
Query: 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRR-------ALQDVLEDDLQ 122
+WKD L+ K+ P PG + LDVAGGTGD+AFR L+ V S +R A Q++ +++
Sbjct: 93 VWKDLLLWKMRPLPGTQLLDVAGGTGDIAFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIA 152
Query: 123 EE----------TRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMD 172
+E +R+ +CDIN ML VGK++AL +GY L WV GDAE L F+D D
Sbjct: 153 KEYQNEEDSLGGSRVVMCDINKEMLKVGKQKALAQGY-RAGLAWVLGDAEELPFDDDKFD 211
Query: 173 GYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232
YTIAFGIRNVTHI++AL EA+RVLK GGRFLCLE S V+ P+ LYD YSF VIP +G
Sbjct: 212 IYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNNPLISRLYDLYSFQVIPVLG 271
Query: 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
E++AGD SYQYLVES+RRFP QE+F MI DAGF KV YE+L G+VAIHSG K+
Sbjct: 272 EVIAGDWKSYQYLVESIRRFPSQEEFKEMIEDAGFHKVTYESLTSGIVAIHSGFKL 327
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Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q4G064|COQ5_RAT 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Rattus norvegicus GN=Coq5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (784), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 164/297 (55%), Positives = 197/297 (66%), Gaps = 21/297 (7%)
Query: 12 SRLLPMLSSTSLLH---SHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLH 68
S L LS+ SL + T FGF+ V +EK V VF SVA+ YDLMND+MS G+H
Sbjct: 32 SWLGATLSARSLSQEKRAAETHFGFETVSEKEKGGKVYQVFQSVARKYDLMNDMMSLGIH 91
Query: 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSI----KRRALQDVLEDDLQEE 124
R WKD L+ K++P PG + LDVAGGTGD+AFR L V + +RR L+ +E
Sbjct: 92 RAWKDLLIRKMHPLPGTQLLDVAGGTGDIAFRFLSYVQTQHERKQRRQLRTRQNLSWEEI 151
Query: 125 TRIY-------------VCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTM 171
R Y VCDIN ML VGK++AL RG+ L WV GDAE L F+D
Sbjct: 152 ARKYQSKEDPLGGSLVMVCDINREMLKVGKQKALARGHT-AGLAWVLGDAEELPFDDDRF 210
Query: 172 DGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231
D YTIAFGIRNVTHI++AL EA+RVLK GGRFLCLE S V+ P+ LYD YSF VIP I
Sbjct: 211 DVYTIAFGIRNVTHIDRALQEAHRVLKPGGRFLCLEFSQVNDPLISRLYDLYSFQVIPVI 270
Query: 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
GE++AGD SYQYLVES+R+FP QE+F MI DAGFQKV YE+L G+VAIHSG K+
Sbjct: 271 GEVIAGDWKSYQYLVESIRKFPNQEEFKDMIEDAGFQKVTYESLTSGIVAIHSGFKL 327
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Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q5ZLL5|COQ5_CHICK 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Gallus gallus GN=COQ5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (779), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 155/278 (55%), Positives = 189/278 (67%), Gaps = 19/278 (6%)
Query: 29 TSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHL 88
T FGF+ V E+ + + VF +VA+ YD+MND MS G+HR+WKD LV K+NP PG +
Sbjct: 35 THFGFQNVSEAERREKIYQVFENVAEKYDVMNDSMSLGIHRVWKDILVHKMNPSPGTLLV 94
Query: 89 DVAGGTGDVAFRILDTVNSIKRRALQDVLE-----------DDLQEE-------TRIYVC 130
DVAGGTGD+AFR L+ V S++ R LQ L QEE +++ VC
Sbjct: 95 DVAGGTGDIAFRFLNYVRSVRERQLQQKLRHHQNLSWQEISKSYQEEKSNPLGDSQVVVC 154
Query: 131 DINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKAL 190
DIN ML GK++A GY + L WV G+AE L F+D D YTIAFGIRNVT I+ AL
Sbjct: 155 DINKEMLKAGKQKAQHLGYSE-GLSWVLGNAEELHFDDDKFDVYTIAFGIRNVTRIDLAL 213
Query: 191 AEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVR 250
EAYRVLK GGRFLCLE SHV P+ LYD YSF VIP +GE++AGD SYQYLVES+R
Sbjct: 214 QEAYRVLKPGGRFLCLEFSHVSNPLLSRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIR 273
Query: 251 RFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
RFPPQE+ AMI DAGF KV+Y+NL G+VAIHSG K+
Sbjct: 274 RFPPQEELKAMIEDAGFLKVDYQNLNSGIVAIHSGFKL 311
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Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Gallus gallus (taxid: 9031) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q4V7R3|COQ5_XENLA 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Xenopus laevis GN=coq5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (775), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 152/278 (54%), Positives = 191/278 (68%), Gaps = 19/278 (6%)
Query: 29 TSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHL 88
T FGF+ V EEK + V VF +VA NYD+MND MS G+HR WKD L+ + P PGM+ L
Sbjct: 34 THFGFQAVSEEEKRERVYKVFENVAHNYDIMNDAMSLGVHRFWKDWLLQLMKPTPGMQLL 93
Query: 89 DVAGGTGDVAFRILDTVNSIKRRALQDVL--EDDL-----------QEE-----TRIYVC 130
D+AGGTGD++FR ++ + + + + ++ L + DL +EE +R +C
Sbjct: 94 DMAGGTGDISFRFINYIRAQREKWIRQELKFQQDLSWPDISKTYQNKEEGSLMGSRAVIC 153
Query: 131 DINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKAL 190
DIN ML VG +++L GY + L WV GDAE L F D D YTIAFGIRNVTHIE+AL
Sbjct: 154 DINKEMLKVGLQKSLRLGYSE-GLSWVAGDAEELPFGDDKFDVYTIAFGIRNVTHIEQAL 212
Query: 191 AEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVR 250
EAYRVLK GGRFLCLE SHV+ P+ ++YD YSF VIP +GE++A D SYQYLVES+R
Sbjct: 213 QEAYRVLKPGGRFLCLEFSHVNNPLLSKIYDVYSFQVIPVLGEVIAKDWKSYQYLVESIR 272
Query: 251 RFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
RFP QE+F AMI DAGF KV Y NL GVVA+HSG K+
Sbjct: 273 RFPSQEEFKAMIEDAGFSKVNYHNLTSGVVAVHSGFKL 310
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Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q66L51|COQ5_DANRE 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Danio rerio GN=coq5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (772), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 153/278 (55%), Positives = 189/278 (67%), Gaps = 18/278 (6%)
Query: 28 ATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKH 87
+T FGF+ VP EEK++ V VF SVAK YD+MND MS G+HRLWKD L+ +NP PG++
Sbjct: 51 STHFGFQTVPEEEKAEKVYKVFESVAKKYDVMNDAMSLGIHRLWKDTLLHIMNPQPGLRL 110
Query: 88 LDVAGGTGDVAFRILDTVNSIKRR-----------------ALQDVLEDDLQEETRIYVC 130
LD AGGTGD++FR L+ S+ R A V +++ ++R VC
Sbjct: 111 LDTAGGTGDISFRFLEYTRSMYDRQQRLRAKSQQTPSWKDIAGHYVSDEEGPPQSRAVVC 170
Query: 131 DINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKAL 190
DIN ML VGK+RA + G L WV GDAE L F+D D YTIAFGIRNVTHIE+AL
Sbjct: 171 DINKEMLKVGKQRAEDAGIT-TGLSWVAGDAEELPFDDDQFDMYTIAFGIRNVTHIEQAL 229
Query: 191 AEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVR 250
EA+RVLK GGRF+CLE S V P+ LYD YSF +IP +GE++AGD SYQYLVES+R
Sbjct: 230 QEAFRVLKPGGRFMCLEFSKVTNPLLARLYDAYSFQMIPVLGEVIAGDWKSYQYLVESIR 289
Query: 251 RFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
+FP QE F MI DAGF +V+Y NL GG+VAIHSG K+
Sbjct: 290 KFPDQEIFKEMIEDAGFFRVQYFNLTGGIVAIHSGFKL 327
|
Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q54VN2|COQ5_DICDI 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Dictyostelium discoideum GN=coq5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (756), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 148/309 (47%), Positives = 204/309 (66%), Gaps = 24/309 (7%)
Query: 2 AVRVVTRNLGSRLL---------PMLSSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSV 52
+VR ++ ++GSRL +++ + + T FGFK V E+K +V +VF SV
Sbjct: 8 SVRYLSTSIGSRLYCSNTNQTTKNNTNASGVNDNQQTHFGFKTVNKEDKESMVKDVFDSV 67
Query: 53 AKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILD--------- 103
+ +YDLMND+MS G+HRLWKD L++ LNP PG LDVAGGTGD++FR LD
Sbjct: 68 SSSYDLMNDVMSMGIHRLWKDELINTLNPTPGSHLLDVAGGTGDISFRFLDKIKTSPNYF 127
Query: 104 -TVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS---LLWVEG 159
+N + + L ++ DIN +MLN GKKR L +GY D+S + WV+G
Sbjct: 128 PNINKSNNGGGEVLKSSSLPSSATVF--DINQSMLNEGKKRGLNKGYTDQSDPSIDWVQG 185
Query: 160 DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKEL 219
++E L F+D+T + YT++FGIRN T+I++ L EAYRVLK GGRFLCLE S V P+ +
Sbjct: 186 NSEQLPFKDNTFNCYTVSFGIRNCTNIDQVLREAYRVLKPGGRFLCLEFSQVPNPLLRFA 245
Query: 220 YDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGV 279
YD YSF+VIP +G+L++GDR SY YLVES+R+FP QE F MI DAGF++V Y+NL G+
Sbjct: 246 YDQYSFNVIPIMGQLISGDRDSYSYLVESIRKFPDQETFVQMIQDAGFKQVTYKNLTFGI 305
Query: 280 VAIHSGLKI 288
+IHSG K+
Sbjct: 306 CSIHSGFKL 314
|
Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 288 | ||||||
| 224142221 | 289 | predicted protein [Populus trichocarpa] | 1.0 | 0.996 | 0.851 | 1e-142 | |
| 225454710 | 289 | PREDICTED: 2-methoxy-6-polyprenyl-1,4-be | 1.0 | 0.996 | 0.802 | 1e-138 | |
| 449516517 | 289 | PREDICTED: 2-methoxy-6-polyprenyl-1,4-be | 1.0 | 0.996 | 0.806 | 1e-137 | |
| 255573576 | 287 | ubiquinone/menaquinone biosynthesis meth | 0.993 | 0.996 | 0.808 | 1e-136 | |
| 147866319 | 273 | hypothetical protein VITISV_012089 [Viti | 0.944 | 0.996 | 0.816 | 1e-131 | |
| 357468129 | 290 | Ubiquinone biosynthesis methyltransferas | 1.0 | 0.993 | 0.775 | 1e-131 | |
| 214028394 | 289 | ubiE/COQ5 methyltransferase [Brassica ol | 0.996 | 0.993 | 0.782 | 1e-130 | |
| 15242092 | 288 | ubiquinone biosynthesis methyltransferas | 0.996 | 0.996 | 0.785 | 1e-129 | |
| 297796631 | 288 | UbiE/COQ5 methyltransferase family prote | 0.996 | 0.996 | 0.782 | 1e-129 | |
| 363807562 | 290 | uncharacterized protein LOC100794692 [Gl | 1.0 | 0.993 | 0.758 | 1e-127 |
| >gi|224142221|ref|XP_002324457.1| predicted protein [Populus trichocarpa] gi|222865891|gb|EEF03022.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/289 (85%), Positives = 267/289 (92%), Gaps = 1/289 (0%)
Query: 1 MAVRVVTRNLGSRLLPMLSSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMN 60
MA+++V+R LGS+ LPMLSSTS LHSHATSFGFK V EEKSQ+V NVFSSVA NYDLMN
Sbjct: 1 MALKLVSRKLGSKFLPMLSSTSPLHSHATSFGFKHVREEEKSQMVGNVFSSVASNYDLMN 60
Query: 61 DLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120
DLMSGGLHRLWKDRLVS LNPFPGMKHLDVAGGTGDVAF+ILD ++SIKRRA QD + D
Sbjct: 61 DLMSGGLHRLWKDRLVSMLNPFPGMKHLDVAGGTGDVAFKILDGISSIKRRANQDPINDH 120
Query: 121 LQEETRIYVCDINPNMLNVGKKRALERGY-PDKSLLWVEGDAEALCFEDSTMDGYTIAFG 179
LQEET+I+VCDINPNMLNVGKKRA+ERG DKSL+WVEGDAEAL FED+TMDGYTIAFG
Sbjct: 121 LQEETQIHVCDINPNMLNVGKKRAIERGLGEDKSLIWVEGDAEALSFEDNTMDGYTIAFG 180
Query: 180 IRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDR 239
IRNVTHIEK LAEAYRVLK GGRFLCLELSHV++PVFKELYDYYSFSVIPA+GELVAGDR
Sbjct: 181 IRNVTHIEKVLAEAYRVLKHGGRFLCLELSHVEVPVFKELYDYYSFSVIPAVGELVAGDR 240
Query: 240 GSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
SYQYLVES+RRFPPQ KFA+MI+DAGFQKVEYENLVGGVVAIHSGLKI
Sbjct: 241 DSYQYLVESIRRFPPQVKFASMIADAGFQKVEYENLVGGVVAIHSGLKI 289
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454710|ref|XP_002271758.1| PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial [Vitis vinifera] gi|297737279|emb|CBI26480.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust.
Identities = 232/289 (80%), Positives = 265/289 (91%), Gaps = 1/289 (0%)
Query: 1 MAVRVVTRNLGSRLLPMLSSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMN 60
MA+R + N+ ++LLPM S+TSLLHSHATSFGFKEV EEKSQ+V NVF+SVA +YDLMN
Sbjct: 1 MALRTASMNMRNKLLPMFSATSLLHSHATSFGFKEVQEEEKSQMVGNVFTSVASSYDLMN 60
Query: 61 DLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120
DLMSGGLHRLWKDRLVSKL+PFPGMKHLDVAGGTGDVAF+IL+T+N +K R + +V ED+
Sbjct: 61 DLMSGGLHRLWKDRLVSKLHPFPGMKHLDVAGGTGDVAFKILETINKMKLRTMHNVPEDE 120
Query: 121 LQEETRIYVCDINPNMLNVGKKRALERGY-PDKSLLWVEGDAEALCFEDSTMDGYTIAFG 179
LQEET+IY+CDINP ML+VGKKRA+E+G D +LLW+EGDAEAL F+D +MDGYTIAFG
Sbjct: 121 LQEETQIYICDINPRMLDVGKKRAMEQGLGKDPTLLWLEGDAEALSFDDDSMDGYTIAFG 180
Query: 180 IRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDR 239
IRNVTHIEK L+EAYRVLKRGGRFLCLELSHV+IPVFKELYDYYSFSVIPA+GELVAGDR
Sbjct: 181 IRNVTHIEKVLSEAYRVLKRGGRFLCLELSHVEIPVFKELYDYYSFSVIPAMGELVAGDR 240
Query: 240 GSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
SYQYLVES+RRFPPQEKFA+MI++AGFQKVEYENLVGGVVAIHSGLK
Sbjct: 241 ASYQYLVESIRRFPPQEKFASMIANAGFQKVEYENLVGGVVAIHSGLKF 289
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449516517|ref|XP_004165293.1| PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 233/289 (80%), Positives = 262/289 (90%), Gaps = 1/289 (0%)
Query: 1 MAVRVVTRNLGSRLLPMLSSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMN 60
MA+R VTR +GS+ PM S+ +LLHSHATSFGFKEVP EEKS+LV NVFS+VA NYDLMN
Sbjct: 1 MALRSVTRRIGSKFFPMFSTANLLHSHATSFGFKEVPEEEKSRLVGNVFSNVASNYDLMN 60
Query: 61 DLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120
DLMSGGLHRLWKDRLVS+LNPFPGM HLDVAGGTGDVAFRILD +N +KRRA+QDV EDD
Sbjct: 61 DLMSGGLHRLWKDRLVSELNPFPGMNHLDVAGGTGDVAFRILDRINDVKRRAMQDVREDD 120
Query: 121 LQEETRIYVCDINPNMLNVGKKRALERGYPD-KSLLWVEGDAEALCFEDSTMDGYTIAFG 179
LQE+T++YVCDINP+ML+VGKKRA ERG + SL+WVEGDAEAL F D++MDGYTIAFG
Sbjct: 121 LQEQTQVYVCDINPHMLSVGKKRATERGLGEGGSLIWVEGDAEALSFPDNSMDGYTIAFG 180
Query: 180 IRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDR 239
IRNVTHIEK L EAYRVL+RGGRFLCLELSHV+ P+FKELYDYYSFS+IPA+GELV GDR
Sbjct: 181 IRNVTHIEKVLDEAYRVLRRGGRFLCLELSHVEAPLFKELYDYYSFSIIPAVGELVVGDR 240
Query: 240 GSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
SYQYLVES+R+FP QEKFA+MI DAGFQKVEYENLVGGVVAIHSGLK+
Sbjct: 241 ESYQYLVESIRKFPSQEKFASMIVDAGFQKVEYENLVGGVVAIHSGLKL 289
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255573576|ref|XP_002527712.1| ubiquinone/menaquinone biosynthesis methyltransferase, putative [Ricinus communis] gi|223532902|gb|EEF34671.1| ubiquinone/menaquinone biosynthesis methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 232/287 (80%), Positives = 262/287 (91%), Gaps = 1/287 (0%)
Query: 3 VRVVTRNLGSRLLPMLSSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDL 62
+R+ + LG + MLSSTS LHSHATSFGFKEV EEKS++V+NVFS+VA NYDLMNDL
Sbjct: 1 MRLASTKLGRKCFHMLSSTSRLHSHATSFGFKEVQEEEKSRMVNNVFSNVASNYDLMNDL 60
Query: 63 MSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQ 122
MSGGLHRLWKDRLVSKLNPFPG++H+DVAGGTGD+AFRIL+TVNS + RA++D L D LQ
Sbjct: 61 MSGGLHRLWKDRLVSKLNPFPGIRHVDVAGGTGDIAFRILETVNSTRYRAIRDPLNDHLQ 120
Query: 123 EETRIYVCDINPNMLNVGKKRALERGY-PDKSLLWVEGDAEALCFEDSTMDGYTIAFGIR 181
EET+IYVCDINPNMLNVG+KRA+ERG+ DK L+WVEGDAEAL F D +MDGYTIAFGIR
Sbjct: 121 EETQIYVCDINPNMLNVGRKRAIERGFGEDKCLVWVEGDAEALSFPDDSMDGYTIAFGIR 180
Query: 182 NVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGS 241
NVTHIEK LAEAYRVLKRGGRFLCLELSHV+IP+FKELYDYYSFS+IPA+GELVAGDRGS
Sbjct: 181 NVTHIEKVLAEAYRVLKRGGRFLCLELSHVEIPMFKELYDYYSFSIIPALGELVAGDRGS 240
Query: 242 YQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
YQYLVES+RRFP Q+KFA+MI+DAGFQKVEYENLVGGVVAIHSGLK
Sbjct: 241 YQYLVESIRRFPTQDKFASMIADAGFQKVEYENLVGGVVAIHSGLKF 287
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147866319|emb|CAN82031.1| hypothetical protein VITISV_012089 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/273 (81%), Positives = 251/273 (91%), Gaps = 1/273 (0%)
Query: 17 MLSSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLV 76
M S+TSLLHSHATSFGFKEV EEKSQ+V NVF+SVA +YDLMNDLMS GLHRLWKDRLV
Sbjct: 1 MFSATSLLHSHATSFGFKEVQEEEKSQMVGNVFTSVASSYDLMNDLMSAGLHRLWKDRLV 60
Query: 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNM 136
SKL+PFPGMKHLDVAGGTGDVAF+IL+T+N +K R + +V ED+LQEET+IY+CDINP M
Sbjct: 61 SKLHPFPGMKHLDVAGGTGDVAFKILETINKMKLRTMHNVPEDELQEETQIYICDINPRM 120
Query: 137 LNVGKKRALERGY-PDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYR 195
L+VGKKRA+E+G D +LLW+EGDAEAL F+D +MDGYTIAFGIRNVTHIEK L+EAYR
Sbjct: 121 LDVGKKRAMEQGLGKDPTLLWLEGDAEALSFDDDSMDGYTIAFGIRNVTHIEKVLSEAYR 180
Query: 196 VLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 255
VLKRGGRFLCLELSHV+IPVFKELYDYYSFSVIPA+GELVAGDR SYQYLVES+RRFPPQ
Sbjct: 181 VLKRGGRFLCLELSHVEIPVFKELYDYYSFSVIPAMGELVAGDRASYQYLVESIRRFPPQ 240
Query: 256 EKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
EKFA+MI++AGFQKVEYENLVGGV AIHSGLK
Sbjct: 241 EKFASMIANAGFQKVEYENLVGGVXAIHSGLKF 273
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357468129|ref|XP_003604349.1| Ubiquinone biosynthesis methyltransferase COQ5 [Medicago truncatula] gi|217074334|gb|ACJ85527.1| unknown [Medicago truncatula] gi|355505404|gb|AES86546.1| Ubiquinone biosynthesis methyltransferase COQ5 [Medicago truncatula] gi|388495236|gb|AFK35684.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/290 (77%), Positives = 258/290 (88%), Gaps = 2/290 (0%)
Query: 1 MAVRVVTRNLGSRLLPMLSSTS-LLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLM 59
MA+ +VT+ LG++L P LSSTS LLHSHATSFGFK V EEK+++V +VF+SVAKNYD M
Sbjct: 1 MALGIVTKRLGNKLFPALSSTSRLLHSHATSFGFKHVNEEEKARMVGDVFTSVAKNYDTM 60
Query: 60 NDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLED 119
NDLMS GLHRLWK+RLVS LNPFPGMKHLDVAGGTGDVAFRILD +N +K+R LQD D
Sbjct: 61 NDLMSAGLHRLWKERLVSMLNPFPGMKHLDVAGGTGDVAFRILDNINRVKQRGLQDGFND 120
Query: 120 DLQEETRIYVCDINPNMLNVGKKRALERGY-PDKSLLWVEGDAEALCFEDSTMDGYTIAF 178
L+ +T+IYVCDINPNMLNVGK+RA E+GY D SL+WVEG+AE+L F+D +MDGYTIAF
Sbjct: 121 ALEAKTQIYVCDINPNMLNVGKQRAAEKGYGEDGSLVWVEGNAESLSFQDDSMDGYTIAF 180
Query: 179 GIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGD 238
GIRNVTHIEK L+EA+RVLK GGRFLCLELSHV +P+FKELYD YSFSVIP IGE+VAGD
Sbjct: 181 GIRNVTHIEKVLSEAHRVLKHGGRFLCLELSHVSLPIFKELYDLYSFSVIPRIGEMVAGD 240
Query: 239 RGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
R SYQYLVES+RRFPPQEKFA+MI+DAGFQKVEYENLVGGVVAIHSG+KI
Sbjct: 241 RESYQYLVESIRRFPPQEKFASMIADAGFQKVEYENLVGGVVAIHSGIKI 290
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|214028394|gb|ACJ63440.1| ubiE/COQ5 methyltransferase [Brassica oleracea var. italica] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/290 (78%), Positives = 258/290 (88%), Gaps = 3/290 (1%)
Query: 1 MAVRVVTRNLGSRLLPMLSST-SLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLM 59
MA+R ++R GSR+L SS+ + LHSHATSFGF++V EEKS+LV NVF++VA +YD+M
Sbjct: 1 MALRSISRRFGSRVLSYRSSSVASLHSHATSFGFQQVKEEEKSKLVGNVFTNVASSYDIM 60
Query: 60 NDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLED 119
NDLMSGGLHRLWK+RLV KL+PF GMKHLDVAGGTGDVAFRI D VNS+KRRAL+ V ED
Sbjct: 61 NDLMSGGLHRLWKERLVGKLSPFAGMKHLDVAGGTGDVAFRIFDAVNSVKRRALRKVDED 120
Query: 120 DLQEETRIYVCDINPNMLNVGKKRALERGYPD-KSLLWVEGDAEALCFEDSTMDGYTIAF 178
L EET+IYVCDINPNMLNVGK+RA ERG D KSL+WVEGDAEAL F+D++MDGYTIAF
Sbjct: 121 SL-EETQIYVCDINPNMLNVGKQRAAERGLGDNKSLVWVEGDAEALSFDDNSMDGYTIAF 179
Query: 179 GIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGD 238
GIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFK++YD YSF VIP +GEL+AGD
Sbjct: 180 GIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKDVYDLYSFKVIPNLGELIAGD 239
Query: 239 RGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
R SYQYLVESVRRFPPQEKFA MI+DAGF+ VEYENLVGGVVAIHS +K+
Sbjct: 240 RESYQYLVESVRRFPPQEKFATMIADAGFETVEYENLVGGVVAIHSAIKL 289
|
Source: Brassica oleracea var. italica Species: Brassica oleracea Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15242092|ref|NP_200540.1| ubiquinone biosynthesis methyltransferase COQ5 [Arabidopsis thaliana] gi|145334829|ref|NP_001078760.1| ubiquinone biosynthesis methyltransferase COQ5 [Arabidopsis thaliana] gi|334188458|ref|NP_001190558.1| ubiquinone biosynthesis methyltransferase COQ5 [Arabidopsis thaliana] gi|75180644|sp|Q9LVC8.1|COQ5_ARATH RecName: Full=2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial; AltName: Full=Ubiquinone biosynthesis methyltransferase COQ5; Flags: Precursor gi|8777363|dbj|BAA96953.1| ubiquinone/menaquinone biosynthesis methyltransferase-like [Arabidopsis thaliana] gi|15293011|gb|AAK93616.1| putative ubiquinone/menaquinone biosynthesis methyltransferase [Arabidopsis thaliana] gi|20258881|gb|AAM14112.1| putative ubiquinone/menaquinone biosynthesis methyltransferase [Arabidopsis thaliana] gi|332009497|gb|AED96880.1| ubiquinone biosynthesis methyltransferase COQ5 [Arabidopsis thaliana] gi|332009498|gb|AED96881.1| ubiquinone biosynthesis methyltransferase COQ5 [Arabidopsis thaliana] gi|332009499|gb|AED96882.1| ubiquinone biosynthesis methyltransferase COQ5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/289 (78%), Positives = 256/289 (88%), Gaps = 2/289 (0%)
Query: 1 MAVRVVTRNLGSRLLPMLSSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMN 60
MA+R V+R LGSR+L S + LHSHATSFGF+EV EEKS+LV NVF++VA +YD+MN
Sbjct: 1 MALRSVSRRLGSRILNQRSFVASLHSHATSFGFQEVKEEEKSKLVGNVFTNVASSYDIMN 60
Query: 61 DLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120
D+MSGGLHRLWK+RLV KL+PF GMKHLDVAGGTGDVAFRI D V S+KRRALQ V E
Sbjct: 61 DVMSGGLHRLWKERLVGKLSPFAGMKHLDVAGGTGDVAFRIYDAVYSVKRRALQKVDEAS 120
Query: 121 LQEETRIYVCDINPNMLNVGKKRALERGYPD-KSLLWVEGDAEALCFEDSTMDGYTIAFG 179
L EET+IYVCDINPNMLNVGK+RA ERG D KSL+WVEGDAEAL F+D++MDGYTIAFG
Sbjct: 121 L-EETQIYVCDINPNMLNVGKQRAAERGLRDNKSLVWVEGDAEALSFDDNSMDGYTIAFG 179
Query: 180 IRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDR 239
IRNVTHIEKALAEAYRVLKRGGRFLCLELSHV+IPVFK LYD YSF VIP +GEL+AGDR
Sbjct: 180 IRNVTHIEKALAEAYRVLKRGGRFLCLELSHVEIPVFKNLYDLYSFQVIPNLGELIAGDR 239
Query: 240 GSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
SYQYLVESVRRFPPQE+FA+MI+DAGF+KVEYENLVGGVVAIHS +K+
Sbjct: 240 ESYQYLVESVRRFPPQERFASMIADAGFEKVEYENLVGGVVAIHSAIKL 288
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297796631|ref|XP_002866200.1| UbiE/COQ5 methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297312035|gb|EFH42459.1| UbiE/COQ5 methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/289 (78%), Positives = 256/289 (88%), Gaps = 2/289 (0%)
Query: 1 MAVRVVTRNLGSRLLPMLSSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMN 60
MA+R V+R LGSR+L S + LHSHATSFGF+EV EEKS+LV NVF++VA +YD+MN
Sbjct: 1 MALRSVSRRLGSRILNHRSFVASLHSHATSFGFQEVKEEEKSKLVGNVFTNVASSYDIMN 60
Query: 61 DLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120
D+MSGGLHRLWK+RLV KL+PF GMKHLDVAGGTGDVAFRI D V S+KRRALQ V E
Sbjct: 61 DVMSGGLHRLWKERLVGKLSPFAGMKHLDVAGGTGDVAFRIYDAVYSVKRRALQKVDEAS 120
Query: 121 LQEETRIYVCDINPNMLNVGKKRALERGYPD-KSLLWVEGDAEALCFEDSTMDGYTIAFG 179
L EET+IYVCDINPNMLNVGK+RA ERG D KSL+WVEGDAEAL F+D++MDGYTIAFG
Sbjct: 121 L-EETQIYVCDINPNMLNVGKQRAAERGLRDNKSLVWVEGDAEALSFDDNSMDGYTIAFG 179
Query: 180 IRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDR 239
IRNVTHIEKALAEAYRVLKRGGRFLCLELSHV+IP+FK LYD YSF VIP +GEL+AGDR
Sbjct: 180 IRNVTHIEKALAEAYRVLKRGGRFLCLELSHVEIPIFKNLYDLYSFQVIPNLGELIAGDR 239
Query: 240 GSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
SYQYLVESVRRFPPQE+FA+MI+DAGF+KVEYENLVGGVVAIHS +K+
Sbjct: 240 ESYQYLVESVRRFPPQERFASMIADAGFEKVEYENLVGGVVAIHSAIKL 288
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363807562|ref|NP_001242149.1| uncharacterized protein LOC100794692 [Glycine max] gi|255638961|gb|ACU19782.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/290 (75%), Positives = 256/290 (88%), Gaps = 2/290 (0%)
Query: 1 MAVRVVTRNLGSRLLPMLS-STSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLM 59
MA+ VTR LG++LLP LS S LLHSHATSFGFK+V EEK+++V +VF+SVA +YDLM
Sbjct: 1 MALGTVTRRLGNKLLPALSPSPRLLHSHATSFGFKQVNEEEKARMVGDVFTSVASSYDLM 60
Query: 60 NDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLED 119
NDLMS GLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRIL+ ++ +K + L+ +D
Sbjct: 61 NDLMSAGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILENIHKVKLKGLRGAFQD 120
Query: 120 DLQEETRIYVCDINPNMLNVGKKRALERGY-PDKSLLWVEGDAEALCFEDSTMDGYTIAF 178
L+ ET+IYVCDINP MLNVGK+RA E+G+ D SL+WVEG+AE+L F++ +MDGYTIAF
Sbjct: 121 TLEAETQIYVCDINPKMLNVGKQRASEKGFGEDGSLVWVEGNAESLSFQNDSMDGYTIAF 180
Query: 179 GIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGD 238
GIRNVTHIEK L+EA+RVLK GGRFLCLELSHV IP+FK+LYDYYSFSVIP +GELVAGD
Sbjct: 181 GIRNVTHIEKVLSEAHRVLKPGGRFLCLELSHVGIPIFKDLYDYYSFSVIPYMGELVAGD 240
Query: 239 RGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
R SYQYLVES+RRFP QEKFA+MI+DAGFQKVEYENLVGGVVAIHSGLKI
Sbjct: 241 RQSYQYLVESIRRFPSQEKFASMIADAGFQKVEYENLVGGVVAIHSGLKI 290
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 288 | ||||||
| TAIR|locus:2165630 | 288 | AT5G57300 [Arabidopsis thalian | 0.996 | 0.996 | 0.761 | 3.5e-114 | |
| UNIPROTKB|F1NBB0 | 311 | COQ5 "2-methoxy-6-polyprenyl-1 | 0.569 | 0.527 | 0.636 | 8.5e-77 | |
| UNIPROTKB|F1NXQ7 | 318 | COQ5 "2-methoxy-6-polyprenyl-1 | 0.569 | 0.515 | 0.636 | 8.5e-77 | |
| UNIPROTKB|Q5ZLL5 | 311 | COQ5 "2-methoxy-6-polyprenyl-1 | 0.569 | 0.527 | 0.630 | 1.8e-76 | |
| UNIPROTKB|Q5HYK3 | 327 | COQ5 "2-methoxy-6-polyprenyl-1 | 0.899 | 0.792 | 0.577 | 1e-75 | |
| UNIPROTKB|Q0P5A2 | 330 | COQ5 "2-methoxy-6-polyprenyl-1 | 0.899 | 0.784 | 0.570 | 2.1e-75 | |
| UNIPROTKB|E2RF28 | 327 | COQ5 "Uncharacterized protein" | 0.899 | 0.792 | 0.570 | 2.1e-75 | |
| RGD|1310857 | 327 | Coq5 "coenzyme Q5 homolog, met | 0.899 | 0.792 | 0.566 | 5.1e-74 | |
| MGI|MGI:1098643 | 327 | Coq5 "coenzyme Q5 homolog, met | 0.899 | 0.792 | 0.555 | 7.5e-73 | |
| ZFIN|ZDB-GENE-040912-5 | 327 | zgc:92445 "zgc:92445" [Danio r | 0.902 | 0.795 | 0.550 | 7.5e-73 |
| TAIR|locus:2165630 AT5G57300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1126 (401.4 bits), Expect = 3.5e-114, P = 3.5e-114
Identities = 220/289 (76%), Positives = 247/289 (85%)
Query: 1 MAVRVVTRNLGXXXXXXXXXXXXXXXHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMN 60
MA+R V+R LG HATSFGF+EV EEKS+LV NVF++VA +YD+MN
Sbjct: 1 MALRSVSRRLGSRILNQRSFVASLHSHATSFGFQEVKEEEKSKLVGNVFTNVASSYDIMN 60
Query: 61 DLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120
D+MSGGLHRLWK+RLV KL+PF GMKHLDVAGGTGDVAFRI D V S+KRRALQ V E
Sbjct: 61 DVMSGGLHRLWKERLVGKLSPFAGMKHLDVAGGTGDVAFRIYDAVYSVKRRALQKVDEAS 120
Query: 121 LQEETRIYVCDINPNMLNVGKKRALERGYPD-KSLLWVEGDAEALCFEDSTMDGYTIAFG 179
L EET+IYVCDINPNMLNVGK+RA ERG D KSL+WVEGDAEAL F+D++MDGYTIAFG
Sbjct: 121 L-EETQIYVCDINPNMLNVGKQRAAERGLRDNKSLVWVEGDAEALSFDDNSMDGYTIAFG 179
Query: 180 IRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDR 239
IRNVTHIEKALAEAYRVLKRGGRFLCLELSHV+IPVFK LYD YSF VIP +GEL+AGDR
Sbjct: 180 IRNVTHIEKALAEAYRVLKRGGRFLCLELSHVEIPVFKNLYDLYSFQVIPNLGELIAGDR 239
Query: 240 GSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
SYQYLVESVRRFPPQE+FA+MI+DAGF+KVEYENLVGGVVAIHS +K+
Sbjct: 240 ESYQYLVESVRRFPPQERFASMIADAGFEKVEYENLVGGVVAIHSAIKL 288
|
|
| UNIPROTKB|F1NBB0 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
Identities = 105/165 (63%), Positives = 124/165 (75%)
Query: 124 ETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV 183
++++ VCDIN ML GK+RA GY + L WV G+AE L F+D D YTIAFGIRNV
Sbjct: 148 DSQVVVCDINKEMLKAGKQRAQHLGYSE-GLSWVLGNAEELPFDDDKFDVYTIAFGIRNV 206
Query: 184 THIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQ 243
T I+ AL EAYRVLK GGRFLCLE SHV P+ LYD YSF VIP +GE++AGD SYQ
Sbjct: 207 TRIDLALQEAYRVLKPGGRFLCLEFSHVSNPLLSRLYDLYSFQVIPVLGEVIAGDWKSYQ 266
Query: 244 YLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
YLVES+RRFPPQE+ AMI DAGF KV+Y+NL G+VAIHSG K+
Sbjct: 267 YLVESIRRFPPQEELKAMIEDAGFLKVDYQNLNSGIVAIHSGFKL 311
|
|
| UNIPROTKB|F1NXQ7 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
Identities = 105/165 (63%), Positives = 124/165 (75%)
Query: 124 ETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV 183
++++ VCDIN ML GK+RA GY + L WV G+AE L F+D D YTIAFGIRNV
Sbjct: 155 DSQVVVCDINKEMLKAGKQRAQHLGYSE-GLSWVLGNAEELPFDDDKFDVYTIAFGIRNV 213
Query: 184 THIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQ 243
T I+ AL EAYRVLK GGRFLCLE SHV P+ LYD YSF VIP +GE++AGD SYQ
Sbjct: 214 TRIDLALQEAYRVLKPGGRFLCLEFSHVSNPLLSRLYDLYSFQVIPVLGEVIAGDWKSYQ 273
Query: 244 YLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
YLVES+RRFPPQE+ AMI DAGF KV+Y+NL G+VAIHSG K+
Sbjct: 274 YLVESIRRFPPQEELKAMIEDAGFLKVDYQNLNSGIVAIHSGFKL 318
|
|
| UNIPROTKB|Q5ZLL5 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 538 (194.4 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
Identities = 104/165 (63%), Positives = 124/165 (75%)
Query: 124 ETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV 183
++++ VCDIN ML GK++A GY + L WV G+AE L F+D D YTIAFGIRNV
Sbjct: 148 DSQVVVCDINKEMLKAGKQKAQHLGYSE-GLSWVLGNAEELHFDDDKFDVYTIAFGIRNV 206
Query: 184 THIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQ 243
T I+ AL EAYRVLK GGRFLCLE SHV P+ LYD YSF VIP +GE++AGD SYQ
Sbjct: 207 TRIDLALQEAYRVLKPGGRFLCLEFSHVSNPLLSRLYDLYSFQVIPVLGEVIAGDWKSYQ 266
Query: 244 YLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
YLVES+RRFPPQE+ AMI DAGF KV+Y+NL G+VAIHSG K+
Sbjct: 267 YLVESIRRFPPQEELKAMIEDAGFLKVDYQNLNSGIVAIHSGFKL 311
|
|
| UNIPROTKB|Q5HYK3 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 160/277 (57%), Positives = 196/277 (70%)
Query: 29 TSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHL 88
T FGF+ V EEK V VF SVAK YD+MND+MS G+HR+WKD L+ K++P PG + L
Sbjct: 52 THFGFETVSEEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMHPLPGTQLL 111
Query: 89 DVAGGTGDVAFRILDTVNSI-----KR--RALQDVLEDDLQEE----------TRIYVCD 131
DVAGGTGD+AFR L+ V S KR RA Q++ +++ +E +R+ VCD
Sbjct: 112 DVAGGTGDIAFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCD 171
Query: 132 INPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALA 191
IN ML VGK++AL +GY L WV GDAE L F+D D YTIAFGIRNVTHI++AL
Sbjct: 172 INKEMLKVGKQKALAQGYR-AGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQ 230
Query: 192 EAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRR 251
EA+RVLK GGRFLCLE S V+ P+ LYD YSF VIP +GE++AGD SYQYLVES+RR
Sbjct: 231 EAHRVLKPGGRFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRR 290
Query: 252 FPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
FP QE+F MI DAGF KV YE+L G+VAIHSG K+
Sbjct: 291 FPSQEEFKDMIEDAGFHKVTYESLTSGIVAIHSGFKL 327
|
|
| UNIPROTKB|Q0P5A2 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 158/277 (57%), Positives = 196/277 (70%)
Query: 29 TSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHL 88
T FGF+ V EEK V VF SVAK YD+MND+MS G+HR+WKD L+ K+ PFPG + L
Sbjct: 52 THFGFETVSEEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMRPFPGTQLL 111
Query: 89 DVAGGTGDVAFRILDTVNSI-----KR--RALQDVLEDDL-----QEE-----TRIYVCD 131
DVAGGTGD+AFR L+ V + KR RA Q++ +++ EE + + VCD
Sbjct: 112 DVAGGTGDIAFRFLNYVQAQHQRKQKRQLRAQQNLSWEEIARKYQNEEDSLGGSHVMVCD 171
Query: 132 INPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALA 191
IN ML +GK++A +GY L W+ GDAE L F+D+ D YTIAFGIRNVTHI++AL
Sbjct: 172 INKEMLKIGKQKARAQGYK-AGLAWILGDAEELPFDDNKFDVYTIAFGIRNVTHIDQALQ 230
Query: 192 EAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRR 251
EA+RVLK GGRFLCLE S V+ P+ LYD YSF VIP +GE++AGD SYQYLVES+R+
Sbjct: 231 EAHRVLKPGGRFLCLEFSQVNNPLLSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIRQ 290
Query: 252 FPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
FP QE+F MI DAGFQKV YENL G+VAIHSG K+
Sbjct: 291 FPSQEEFKEMIEDAGFQKVTYENLTSGIVAIHSGFKL 327
|
|
| UNIPROTKB|E2RF28 COQ5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 158/277 (57%), Positives = 197/277 (71%)
Query: 29 TSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHL 88
T FGF+ V EEK V +VF SVAK YD+MND+MS G+HR+WKD L+ K+ PFPG + L
Sbjct: 52 THFGFETVSEEEKRGKVYHVFESVAKKYDVMNDMMSLGIHRIWKDLLLCKMRPFPGTQLL 111
Query: 89 DVAGGTGDVAFRILDTVNSI-----KR--RALQDVLEDDL-----QEE-----TRIYVCD 131
DVAGGTGD+AFR L+ V + KR RA Q++ +++ EE +R+ VCD
Sbjct: 112 DVAGGTGDIAFRFLNYVQAQHKGKQKRQLRAQQNLSWEEIAKKYQNEEDPLGGSRVVVCD 171
Query: 132 INPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALA 191
IN ML +GK++A +GY L WV GDAE L F+D D YTIAFGIRNVTHI++AL
Sbjct: 172 INKEMLKIGKQKARAQGYK-AGLAWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDQALQ 230
Query: 192 EAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRR 251
EA+RVLK GGRFLCLE S V+ P+ LYD YSF VIP +GE++AGD SYQYLVES+R+
Sbjct: 231 EAHRVLKPGGRFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRQ 290
Query: 252 FPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
FP QE+F MI DAGF+KV YE+L G+VAIHSG K+
Sbjct: 291 FPSQEEFREMIEDAGFEKVTYESLTSGIVAIHSGFKL 327
|
|
| RGD|1310857 Coq5 "coenzyme Q5 homolog, methyltransferase (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 157/277 (56%), Positives = 195/277 (70%)
Query: 29 TSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHL 88
T FGF+ V +EK V VF SVA+ YDLMND+MS G+HR WKD L+ K++P PG + L
Sbjct: 52 THFGFETVSEKEKGGKVYQVFQSVARKYDLMNDMMSLGIHRAWKDLLIRKMHPLPGTQLL 111
Query: 89 DVAGGTGDVAFRILDTVNSI----KRRAL---QDVLEDDL------QEE----TRIYVCD 131
DVAGGTGD+AFR L V + +RR L Q++ +++ +E+ + + VCD
Sbjct: 112 DVAGGTGDIAFRFLSYVQTQHERKQRRQLRTRQNLSWEEIARKYQSKEDPLGGSLVMVCD 171
Query: 132 INPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALA 191
IN ML VGK++AL RG+ L WV GDAE L F+D D YTIAFGIRNVTHI++AL
Sbjct: 172 INREMLKVGKQKALARGHT-AGLAWVLGDAEELPFDDDRFDVYTIAFGIRNVTHIDRALQ 230
Query: 192 EAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRR 251
EA+RVLK GGRFLCLE S V+ P+ LYD YSF VIP IGE++AGD SYQYLVES+R+
Sbjct: 231 EAHRVLKPGGRFLCLEFSQVNDPLISRLYDLYSFQVIPVIGEVIAGDWKSYQYLVESIRK 290
Query: 252 FPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
FP QE+F MI DAGFQKV YE+L G+VAIHSG K+
Sbjct: 291 FPNQEEFKDMIEDAGFQKVTYESLTSGIVAIHSGFKL 327
|
|
| MGI|MGI:1098643 Coq5 "coenzyme Q5 homolog, methyltransferase (yeast)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 154/277 (55%), Positives = 190/277 (68%)
Query: 29 TSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHL 88
T FGF+ V EK V VF +VAK YDLMND+MS G+HR WKD L+ K++P PG + L
Sbjct: 52 THFGFETVSEGEKGSKVYQVFENVAKKYDLMNDMMSLGIHRAWKDLLIRKMHPLPGTQLL 111
Query: 89 DVAGGTGDVAFRILDTVNSI----KRRAL--------QDVLEDDLQEETRI-----YVCD 131
D+AGGTGD+AFR L V + +RR L +++ + EE + VCD
Sbjct: 112 DMAGGTGDIAFRFLSYVQAQHQRRQRRQLRTQQNLSWEEIAKKYQNEEDSLGGSLATVCD 171
Query: 132 INPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALA 191
IN ML VGK++AL++G+ L WV GDAE L F+D + D YTIAFGIRNVTHI++AL
Sbjct: 172 INREMLKVGKQKALDQGHT-AGLAWVLGDAEELPFDDDSFDVYTIAFGIRNVTHIDQALQ 230
Query: 192 EAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRR 251
EA+RVLK GGRFLCLE V+ P+ LYD YSF VIP IGE++AGD SYQYLVES+R+
Sbjct: 231 EAHRVLKPGGRFLCLEFGQVNDPLISRLYDLYSFQVIPVIGEVIAGDWKSYQYLVESIRK 290
Query: 252 FPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
FP QE F MI DAGFQ+V YENL G+VAIHSG K+
Sbjct: 291 FPNQEDFKDMIEDAGFQRVTYENLTTGIVAIHSGFKL 327
|
|
| ZFIN|ZDB-GENE-040912-5 zgc:92445 "zgc:92445" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 153/278 (55%), Positives = 190/278 (68%)
Query: 28 ATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKH 87
+T FGF+ VP EEK++ V VF SVAK YD+MND MS G+HRLWKD L+ +NP PG++
Sbjct: 51 STHFGFQTVPEEEKAEKVYKVFESVAKKYDVMNDAMSLGIHRLWKDTLLHIMNPQPGLRL 110
Query: 88 LDVAGGTGDVAFRILDTVNSIKRR------------ALQDVLEDDLQEE-----TRIYVC 130
LD AGGTGD++FR L+ S+ R + +D+ + +E +R VC
Sbjct: 111 LDTAGGTGDISFRFLEYTRSMYDRQQRLRAKSQQTPSWKDIAGHYVSDEEGPPQSRAVVC 170
Query: 131 DINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKAL 190
DIN ML VGK+RA + G L WV GDAE L F+D D YTIAFGIRNVTHIE+AL
Sbjct: 171 DINKEMLKVGKQRAEDAGITT-GLSWVAGDAEELPFDDDQFDMYTIAFGIRNVTHIEQAL 229
Query: 191 AEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVR 250
EA+RVLK GGRF+CLE S V P+ LYD YSF +IP +GE++AGD SYQYLVES+R
Sbjct: 230 QEAFRVLKPGGRFMCLEFSKVTNPLLARLYDAYSFQMIPVLGEVIAGDWKSYQYLVESIR 289
Query: 251 RFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
+FP QE F MI DAGF +V+Y NL GG+VAIHSG K+
Sbjct: 290 KFPDQEIFKEMIEDAGFFRVQYFNLTGGIVAIHSGFKL 327
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B9JZF4 | UBIE_AGRVS | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5257 | 0.8784 | 0.9806 | yes | no |
| A1UUE1 | UBIE_BARBK | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5190 | 0.8437 | 0.9346 | yes | no |
| Q0P5A2 | COQ5_BOVIN | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5405 | 0.9479 | 0.8272 | yes | no |
| A4WVR7 | UBIE_RHOS5 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5247 | 0.8506 | 0.98 | yes | no |
| Q9X3X2 | UBIE_ZYMMO | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5135 | 0.8263 | 0.9834 | yes | no |
| Q5RBK6 | COQ5_PONAB | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5439 | 0.9479 | 0.8348 | yes | no |
| A3PFL1 | UBIE_RHOS1 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5285 | 0.8506 | 0.98 | yes | no |
| B3Q619 | UBIE_RHOPT | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5207 | 0.8506 | 0.9683 | yes | no |
| Q8UIH5 | UBIE_AGRT5 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5267 | 0.8437 | 0.9382 | yes | no |
| Q9LVC8 | COQ5_ARATH | 2, ., 1, ., 1, ., 2, 0, 1 | 0.7854 | 0.9965 | 0.9965 | yes | no |
| Q92SK7 | UBIE_RHIME | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5361 | 0.8402 | 0.9379 | yes | no |
| Q5HYK3 | COQ5_HUMAN | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5703 | 0.8993 | 0.7920 | yes | no |
| A4YJH0 | UBIE_BRASO | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5283 | 0.8506 | 0.9683 | yes | no |
| A5E888 | UBIE_BRASB | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5358 | 0.8506 | 0.9683 | yes | no |
| Q8YDE4 | UBIE_BRUME | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5402 | 0.8402 | 0.8996 | yes | no |
| B8IJ00 | UBIE_METNO | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5509 | 0.8368 | 0.9563 | yes | no |
| Q2YJM4 | UBIE_BRUA2 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5402 | 0.8402 | 0.8996 | yes | no |
| A9ILA7 | UBIE_BART1 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5076 | 0.8368 | 0.9269 | yes | no |
| Q2KDB0 | UBIE_RHIEC | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5367 | 0.8784 | 0.9806 | yes | no |
| Q4G064 | COQ5_RAT | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5521 | 0.9583 | 0.8440 | yes | no |
| Q576Q0 | UBIE_BRUAB | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5402 | 0.8402 | 0.8996 | yes | no |
| A9WW74 | UBIE_BRUSI | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5363 | 0.8402 | 0.8996 | yes | no |
| Q89WD0 | UBIE_BRAJA | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5133 | 0.8437 | 0.9604 | yes | no |
| Q13EN8 | UBIE_RHOPS | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5151 | 0.8472 | 0.9644 | yes | no |
| Q5JNC0 | COQ5_ORYSJ | 2, ., 1, ., 1, ., 2, 0, 1 | 0.7559 | 0.9965 | 0.9761 | yes | no |
| B9KQJ8 | UBIE_RHOSK | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5285 | 0.8506 | 0.98 | yes | no |
| B2SC50 | UBIE_BRUA1 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5402 | 0.8402 | 0.8996 | yes | no |
| Q4V7R3 | COQ5_XENLA | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5467 | 0.8993 | 0.8354 | N/A | no |
| B5ZYK8 | UBIE_RHILW | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5330 | 0.8784 | 0.9806 | yes | no |
| B9J7S8 | UBIE_AGRRK | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5073 | 0.8784 | 0.9806 | yes | no |
| Q54VN2 | COQ5_DICDI | 2, ., 1, ., 1, ., 2, 0, 1 | 0.4789 | 0.9895 | 0.9076 | yes | no |
| Q1QS47 | UBIE_NITHX | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5285 | 0.8437 | 0.9604 | yes | no |
| Q3IY65 | UBIE_RHOS4 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5285 | 0.8506 | 0.98 | yes | no |
| A9MCZ2 | UBIE_BRUC2 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5402 | 0.8402 | 0.8996 | yes | no |
| Q9CXI0 | COQ5_MOUSE | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5523 | 0.8993 | 0.7920 | yes | no |
| Q8FUZ3 | UBIE_BRUSU | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5402 | 0.8402 | 0.8996 | yes | no |
| A1BAN1 | UBIE_PARDP | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5230 | 0.8402 | 0.968 | yes | no |
| C0RMK3 | UBIE_BRUMB | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5402 | 0.8402 | 0.8996 | yes | no |
| B3PZ92 | UBIE_RHIE6 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5330 | 0.8784 | 0.9806 | yes | no |
| Q6G577 | UBIE_BARHE | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5152 | 0.8368 | 0.9269 | yes | no |
| Q6G1I2 | UBIE_BARQU | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5057 | 0.8402 | 0.9307 | yes | no |
| Q5ZLL5 | COQ5_CHICK | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5575 | 0.8993 | 0.8327 | yes | no |
| Q2J2H9 | UBIE_RHOP2 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5094 | 0.8506 | 0.9683 | yes | no |
| A6WYI0 | UBIE_OCHA4 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5287 | 0.8402 | 0.9201 | yes | no |
| Q98GV1 | UBIE_RHILO | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5305 | 0.8437 | 0.9418 | yes | no |
| Q9VYF8 | COQ5_DROME | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5150 | 0.875 | 0.8372 | yes | no |
| Q1MME0 | UBIE_RHIL3 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5294 | 0.8784 | 0.9806 | yes | no |
| Q66L51 | COQ5_DANRE | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5503 | 0.9027 | 0.7951 | yes | no |
| Q6NDM2 | UBIE_RHOPA | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5207 | 0.8506 | 0.9683 | yes | no |
| A6UFF7 | UBIE_SINMW | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5361 | 0.8402 | 0.9379 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pm.C_LG_XVIII0270 | hypothetical protein (289 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.I.7552.1 | hypothetical protein (456 aa) | • | • | • | • | 0.963 | ||||
 | gw1.2627.7.1 | Predicted protein (172 aa) | • | • | 0.773 | ||||||
 | gw1.XIV.1527.1 | hexaprenyldihydroxybenzoate methyltransferase (EC-2.1.1.114) (250 aa) | • | • | • | 0.730 | |||||
 | estExt_fgenesh4_pm.C_LG_V0136 | 4-hydroxybenzoate nonaprenyltransferase (EC-2.5.1.39) (299 aa) | • | • | • | 0.642 | |||||
 | estExt_Genewise1_v1.C_LG_I2831 | hypothetical protein (136 aa) | • | 0.602 | |||||||
 | gw1.V.3372.1 | 4-hydroxybenzoate nonaprenyltransferase (EC-2.5.1.39) (294 aa) | • | • | • | 0.592 | |||||
 | DHQS6 | SubName- Full=Putative uncharacterized protein; (375 aa) | • | • | 0.590 | ||||||
 | grail3.2692000301 | Predicted protein (389 aa) | • | • | • | 0.558 | |||||
 | fgenesh4_pm.C_LG_I001118 | hypothetical protein (460 aa) | • | • | • | 0.515 | |||||
 | estExt_fgenesh4_pg.C_280257 | threonine deaminase (EC-4.3.1.19) (543 aa) | • | • | 0.471 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 288 | |||
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 1e-116 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 1e-101 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 1e-98 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 4e-95 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 1e-51 | |
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 3e-25 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 3e-13 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 2e-12 | |
| PLN02232 | 160 | PLN02232, PLN02232, ubiquinone biosynthesis methyl | 2e-11 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-09 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 9e-08 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-07 | |
| PLN02490 | 340 | PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | 2e-07 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 2e-06 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 1e-05 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 1e-04 | |
| PRK05785 | 226 | PRK05785, PRK05785, hypothetical protein; Provisio | 2e-04 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 4e-04 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 0.001 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 332 bits (855), Expect = e-116
Identities = 113/256 (44%), Positives = 155/256 (60%), Gaps = 17/256 (6%)
Query: 33 FKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAG 92
F V EEK + V+ +F S+A YDLMNDL+S GLHR+W+ + + L PG K LD+A
Sbjct: 1 FMTVAEEEKQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLAC 60
Query: 93 GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152
GTGD+A + V + D + ML VG+++ + G
Sbjct: 61 GTGDLAIALAKAVGKTGE----------------VVGLDFSEGMLAVGREKLRDLGLSGN 104
Query: 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVD 212
+ +V+GDAEAL F D++ D TIAFG+RNV I+KAL E YRVLK GGR + LE S
Sbjct: 105 -VEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPT 163
Query: 213 IPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEY 272
P K+ YD+Y F V+P IG+L++ + +Y YL ES+R FP QE+ AAM+ +AGF++V Y
Sbjct: 164 NPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRY 223
Query: 273 ENLVGGVVAIHSGLKI 288
NL GG+VA+H G K
Sbjct: 224 RNLTGGIVALHVGYKP 239
|
Length = 239 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 296 bits (760), Expect = e-101
Identities = 123/257 (47%), Positives = 157/257 (61%), Gaps = 20/257 (7%)
Query: 33 FKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAG 92
FK V +EK + V VF VAK YDLMNDLMS GLHRLW+ L+S L PG K LDVA
Sbjct: 1 FKMVAKDEKQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVAC 60
Query: 93 GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152
GTGD+A + +V + DI+ +ML V +++ ++G +
Sbjct: 61 GTGDMALLLAKSV-----------------GTGEVVGLDISESMLEVAREKLKKKGVQNV 103
Query: 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVD 212
+V GDAE L F D++ D TI+FG+RNVT I+KAL E YRVLK GGR L LE S D
Sbjct: 104 E--FVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD 161
Query: 213 IPVFKELYDYYSFS-VIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVE 271
PV ++ Y Y F V+P IG+LVA D +Y+YL ES+RRFP QE+ MI AGF++V
Sbjct: 162 NPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221
Query: 272 YENLVGGVVAIHSGLKI 288
YENL G+VA+H G K
Sbjct: 222 YENLTFGIVALHRGYKP 238
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Length = 238 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 288 bits (739), Expect = 1e-98
Identities = 105/243 (43%), Positives = 146/243 (60%), Gaps = 20/243 (8%)
Query: 45 VSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDT 104
V +F +A YDL+NDL+S GLHRLW+ R V + F G K LDVA GTGD+A +
Sbjct: 1 VQEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIEL--- 57
Query: 105 VNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164
+ A ++ D + ML V KK++ ++ +++ DAEAL
Sbjct: 58 ----AKSAPDRG---------KVTGVDFSSEMLEVAKKKSEL----PLNIEFIQADAEAL 100
Query: 165 CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYS 224
FED++ D TIAFG+RNVT I+KAL E YRVLK GGR + LE S + K+ Y +Y
Sbjct: 101 PFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYL 160
Query: 225 FSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHS 284
+V+P+IG L++ + +Y YL ES+R FP QE+ AAM+ +AGF++V Y +L GV AIH
Sbjct: 161 KNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHV 220
Query: 285 GLK 287
G K
Sbjct: 221 GKK 223
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 279 bits (716), Expect = 4e-95
Identities = 110/247 (44%), Positives = 148/247 (59%), Gaps = 18/247 (7%)
Query: 41 KSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFR 100
K Q V +VFSSVA YDLMND++S G+HRLWKD + + G K LDVAGGTGD F
Sbjct: 5 KEQRVGDVFSSVASKYDLMNDVISFGIHRLWKDFTMKCMGVKRGNKFLDVAGGTGDWTFG 64
Query: 101 ILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160
+ D+ ++ DIN NML G+K+A E G ++ +++G+
Sbjct: 65 LSDSA----------------GSSGKVVGLDINENMLKEGEKKAKEEGK--YNIEFLQGN 106
Query: 161 AEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELY 220
AE L FED + D TI+FG+RN K L EA+RVLK GGR +CLE S + P+ + Y
Sbjct: 107 AEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLLSQAY 166
Query: 221 DYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVV 280
+ Y V+P +G++ A SYQYL ES+R FP Q+ A+M AGF+ V YE+L GG+
Sbjct: 167 ELYFKYVMPFMGKMFAKSYKSYQYLQESIRDFPDQKTLASMFEKAGFKSVGYESLTGGIA 226
Query: 281 AIHSGLK 287
AIH G+K
Sbjct: 227 AIHWGIK 233
|
Length = 233 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 1e-51
Identities = 89/249 (35%), Positives = 131/249 (52%), Gaps = 18/249 (7%)
Query: 39 EEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVA 98
E K + V VF + K YD MN ++S H+ W+ + ++N G LDV GT D +
Sbjct: 1 ESKEERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWS 60
Query: 99 FRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158
+ + V E + D + NML+VG+++ + G + L V
Sbjct: 61 IALAEAVG----------------PEGHVIGLDFSENMLSVGRQKVKDAGLHNVEL--VH 102
Query: 159 GDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKE 218
G+A L F+D++ D TI FG+RNV + L E YRV+K GG+ +CLE S IP FK+
Sbjct: 103 GNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQ 162
Query: 219 LYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGG 278
LY +Y ++P G+L A Y +L ES R FP ++ A M +AGF+ VE ++ GG
Sbjct: 163 LYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGG 222
Query: 279 VVAIHSGLK 287
V A+H G K
Sbjct: 223 VAAMHMGFK 231
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 3e-25
Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 16/233 (6%)
Query: 48 VFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNS 107
+F+ +A YD +NDL+S G HR+WK VS G + LD+ G+GD+AF + + V S
Sbjct: 38 LFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGS 97
Query: 108 IKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFE 167
+ V+ D E + ++ L+ K++ W+EGDA L F+
Sbjct: 98 DGK-----VMGLDFSSE----------QLAVAASRQELKAKSCYKNIEWIEGDATDLPFD 142
Query: 168 DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSV 227
D D T+ +G+RNV KA+ E YRVLK G R L+ + P + ++ +V
Sbjct: 143 DCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNV 202
Query: 228 IPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVV 280
+ + G Y+YL S+ + E+ + +AGF ++ + GG++
Sbjct: 203 VVPVAT-GYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGLM 254
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Length = 261 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-13
Identities = 42/142 (29%), Positives = 58/142 (40%), Gaps = 31/142 (21%)
Query: 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCD 131
+ R L PG + LDV G G+ A + V E R+ D
Sbjct: 8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGP----------------EGRVVGID 51
Query: 132 INPNMLNVGKKRALERGYPDKSLLWVE---GDAEALCFEDSTMDGYTIAFGIRNVTHIE- 187
+ ML + K+RA VE GDA+ L F D + D R + H+E
Sbjct: 52 RSEAMLALAKERAAG------LGPNVEFVRGDADGLPFPDGSFD---AVRSDRVLQHLED 102
Query: 188 --KALAEAYRVLKRGGRFLCLE 207
+ALAE RVL+ GGR + L+
Sbjct: 103 PARALAEIARVLRPGGRVVVLD 124
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Length = 241 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-12
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 26/118 (22%)
Query: 88 LDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147
LDV GTG +A + + R+ D++P ML + +KR
Sbjct: 1 LDVGCGTGLLAEALARRGGA------------------RVTGVDLSPEMLALARKR---- 38
Query: 148 GYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205
+V GDAE L F D + D + + ++ E+AL E RVLK GG+ +
Sbjct: 39 ----APRKFVVGDAEDLPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|165876 PLN02232, PLN02232, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 60.9 bits (147), Expect = 2e-11
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
Query: 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHV 211
K + W+EGDA L F+D D T+ +G+RNV +A+ E YRVLK G R L+ +
Sbjct: 26 KCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKS 85
Query: 212 DIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVE 271
+ V + + +V+ + + + Y+YL S+ + E+ + +AGF
Sbjct: 86 NQSVTTFMQGWMIDNVVVPVATVYDLAK-EYEYLKYSINGYLTGEELETLALEAGFSSAC 144
Query: 272 YENLVGG 278
+ + GG
Sbjct: 145 HYEISGG 151
|
Length = 160 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-09
Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 21/133 (15%)
Query: 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKK 142
G+K LD+ GTG + F + + + + DI+ + K+
Sbjct: 3 SGIKVLDLGCGTGYLTFILAEKLGPGAE----------------VVGIDISEEAIEKAKE 46
Query: 143 RALERGYPDKSLLWVEGDAEAL---CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKR 199
A + GY + + +GD E L ED++ D + ++ +K L E RVLK
Sbjct: 47 NAKKLGYENVEFI--QGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKP 104
Query: 200 GGRFLCLELSHVD 212
GG + + +
Sbjct: 105 GGVLIVSDPVLLS 117
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 9e-08
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 22/122 (18%)
Query: 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL 145
+ LD+ GTG +A + R+ DI+P L + +K A
Sbjct: 1 RVLDLGCGTGALALALAS------------------GPGARVTGVDISPVALELARKAAA 42
Query: 146 ERGYPDKSLLWVEGDAEAL-CFEDSTMDG-YTIAFGIRNVTHIEKALAEAYRVLKRGGRF 203
+ ++GDAE L D + D + V + + L EA R+LK GG
Sbjct: 43 ALLADNVE--VLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVL 100
Query: 204 LC 205
+
Sbjct: 101 VL 102
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-07
Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 24/117 (20%)
Query: 88 LDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147
LD+ GTG V + S + DI+ L + K+R ++
Sbjct: 2 LDLGCGTGRVLRALARAGPS------------------SVTGVDISKEALELAKERLRDK 43
Query: 148 GYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH---IEKALAEAYRVLKRGG 201
G + +V DA L FE+ + D A + + L EA R+L+ GG
Sbjct: 44 GPKVR---FVVADARDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 22/120 (18%)
Query: 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKK 142
+K +DV GGTG F L V + + + + D +P+ L K+
Sbjct: 113 RNLKVVDVGGGTG---FTTLGIVKHVDAK--------------NVTILDQSPHQLAKAKQ 155
Query: 143 RALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGR 202
+ P K +EGDAE L F D Y A I ++ + EAYRVLK GG+
Sbjct: 156 KE-----PLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210
|
Length = 340 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-06
Identities = 23/120 (19%), Positives = 33/120 (27%), Gaps = 26/120 (21%)
Query: 88 LDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147
LD+ GTG + +L+ DI+P L +R
Sbjct: 1 LDIGCGTGTLLRALLE-----------------ALPGLEYTGVDISPAALEAAAERL--A 41
Query: 148 GYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH----IEKALAEAYRVLKRGGRF 203
+ V D D + + NV H L R+LK GG
Sbjct: 42 ALGLLDAVRVRLDVLDAIDLDP--GSFDVVV-ASNVLHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 48/229 (20%), Positives = 77/229 (33%), Gaps = 57/229 (24%)
Query: 49 FSSVAKNYDLMNDLMSGGLHRLWKDRLVSKL---NPFPGMKHLDVAGGTGDVAFRILDTV 105
F+ AK YD + R RL++ L F LD+ GTG + +L
Sbjct: 2 FNKAAKTYDRHAKI-----QREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF 56
Query: 106 NSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165
DI+ ML K + E + ++ GDAE L
Sbjct: 57 PQA-----------------EFIANDISAGMLAQAKTKLSEN------VQFICGDAEKLP 93
Query: 166 FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSF 225
EDS+ D ++ + +AL+E RVLK GG EL
Sbjct: 94 LEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP---GTLHEL------ 144
Query: 226 SVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274
R S+ + R+ ++ A++ ++ F+ + E
Sbjct: 145 -------------RQSFG---QHGLRYLSLDELKALLKNS-FELLTLEE 176
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 22/117 (18%)
Query: 88 LDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147
LD+ GTG +A + L R+ D++P ML + ++ A
Sbjct: 6 LDIGCGTGSLAIELA-----------------RLFPGARVTGVDLSPEMLELARENAKLA 48
Query: 148 GYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204
P + +V+GDA ++G+ F + + L +LK GGR +
Sbjct: 49 LGPR--ITFVQGDAPD---ALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRLV 100
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 53/224 (23%), Positives = 84/224 (37%), Gaps = 38/224 (16%)
Query: 45 VSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVS---KLNPFPGMKHLDVAGGTGDVAFRI 101
+ ++ + K YD N +S W+ LV K P K LDVA G G++++
Sbjct: 11 LQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPK-KVLDVAAGKGELSYHF 69
Query: 102 LDTVNSIKRRALQDVLEDDLQEETRIYVC--DINPNMLNVGKKRALERGYPDKSLLWVEG 159
++ + YV D NML K L DK V G
Sbjct: 70 --------------------KKVFKYYVVALDYAENML----KMNLVAD--DK----VVG 99
Query: 160 DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKEL 219
EAL F D + D +F + +IEK +AE RV ++ F + + D + ++
Sbjct: 100 SFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQVGF--IAMGKPDNVIKRKY 157
Query: 220 YDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMIS 263
+Y ++P I L Y+Y+ R P +
Sbjct: 158 LSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFE 201
|
Length = 226 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 38/153 (24%)
Query: 123 EETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE---GDAEALCFEDSTMDGYTIAFG 179
++ D+ P ML + A + GY + VE G+ EAL D+++D I
Sbjct: 101 PTGKVIGVDMTPEMLAKARANARKAGYTN-----VEFRLGEIEALPVADNSVD--VI--- 150
Query: 180 IRN-----VTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGEL 234
I N E+ EA+RVLK GGRF + S + GEL
Sbjct: 151 ISNCVINLSPDKERVFKEAFRVLKPGGRF--------------------AISDVVLRGEL 190
Query: 235 VAGDRGSYQYLVESVRRFPPQEKFAAMISDAGF 267
R + V +E++ AM+++AGF
Sbjct: 191 PEEIRNDAELYAGCVAGALQEEEYLAMLAEAGF 223
|
Length = 272 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 39.5 bits (89), Expect = 0.001
Identities = 26/102 (25%), Positives = 42/102 (41%)
Query: 116 VLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYT 175
+L + D++P ML + + RA G + + L FEDS
Sbjct: 64 LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV 123
Query: 176 IAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFK 217
I+ + ++ KAL E RVLK GGR + +L + +
Sbjct: 124 ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGR 165
|
Length = 257 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 288 | |||
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 100.0 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 100.0 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 100.0 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.97 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.97 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.95 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.94 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.89 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.86 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.85 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.84 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.84 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.83 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.83 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.82 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.81 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.79 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.79 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.78 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.78 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.78 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.77 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.77 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.77 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.77 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.76 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.76 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.76 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.76 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.75 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.75 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.74 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.74 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.73 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.73 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.72 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.72 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.72 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.7 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.69 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.69 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.68 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.68 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.66 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.66 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.65 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.64 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.63 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.63 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.62 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.62 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.61 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.61 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.6 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.6 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.6 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.59 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.59 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.59 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.59 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.58 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.57 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.57 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.56 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.56 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.56 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.55 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.55 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.54 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.54 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.53 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.53 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.52 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.52 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.52 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.51 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.51 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.51 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.51 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.5 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.5 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.5 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.49 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.49 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.48 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.48 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.48 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.47 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.45 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.44 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.44 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.44 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.44 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.42 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.42 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.42 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.42 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.42 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.41 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.41 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.41 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.4 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.39 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.39 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.39 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.38 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.38 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.38 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.37 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.36 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.33 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.32 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.32 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.32 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.3 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.29 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.29 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.28 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.27 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.27 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.27 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.27 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.27 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.26 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.26 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.25 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.23 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.23 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.2 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.19 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.18 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.18 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.17 | |
| PLN02476 | 278 | O-methyltransferase | 99.16 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.16 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.15 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.15 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.14 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.11 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.11 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.11 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.1 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.08 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.08 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.08 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.05 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.05 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.05 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 99.04 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.04 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.02 | |
| PLN02366 | 308 | spermidine synthase | 99.01 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.0 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.97 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.95 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.95 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.95 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.95 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.94 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.93 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.93 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.91 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.9 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.89 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.88 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.87 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.86 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.85 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.83 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.82 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.81 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.81 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.81 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.8 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.79 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.79 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.78 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.75 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.75 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.75 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.73 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.73 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.73 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.73 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.72 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.71 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.69 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.69 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.67 | |
| PLN02823 | 336 | spermine synthase | 98.64 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.63 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.61 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.6 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.6 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.6 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.57 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.55 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.53 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.53 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.52 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.52 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.5 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.45 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.43 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.43 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.42 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.42 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.41 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.41 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.4 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.4 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.4 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.4 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.39 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.37 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.34 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.34 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.34 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.29 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.27 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.26 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.24 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.22 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.22 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.22 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.21 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.17 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.13 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.13 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.1 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.09 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 98.07 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.98 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.97 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.97 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.96 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.95 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.91 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.87 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.83 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.83 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.81 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.79 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.78 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.74 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.73 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.71 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.68 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 97.66 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.61 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.6 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.58 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.58 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.38 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.38 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.36 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.28 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.28 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.28 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.27 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.25 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 97.25 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.18 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 97.12 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.98 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.91 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.91 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 96.88 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.85 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.82 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.79 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.65 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.65 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.58 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 96.47 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.32 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.93 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.89 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.73 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 95.71 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 95.64 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 95.45 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.45 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.31 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 95.25 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 95.17 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.05 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 94.62 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 94.6 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 94.45 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 94.42 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.38 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 94.35 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.84 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 93.78 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 93.73 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 93.73 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 93.62 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.43 | |
| PHA01634 | 156 | hypothetical protein | 93.43 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.08 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 93.02 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 92.95 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 92.86 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 92.75 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 92.53 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 92.4 | |
| PRK13699 | 227 | putative methylase; Provisional | 92.36 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 92.12 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 92.06 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 92.02 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 91.6 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 91.58 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 91.54 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 91.31 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 91.26 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 90.91 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 90.31 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 90.23 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 90.2 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 89.72 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 89.49 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 89.43 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 89.34 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 88.97 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 88.88 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 88.69 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 88.59 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 88.53 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 88.32 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 88.11 | |
| PF07109 | 97 | Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl | 87.81 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 87.03 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 87.0 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 85.64 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 85.12 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 84.82 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 84.73 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 84.28 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 83.96 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 83.79 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 83.68 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 83.41 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 83.33 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 83.11 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 83.09 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 82.96 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 82.62 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 82.44 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 82.12 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 81.59 | |
| KOG2782 | 303 | consensus Putative SAM dependent methyltransferase | 81.13 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 80.22 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 80.17 |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=296.77 Aligned_cols=255 Identities=64% Similarity=1.002 Sum_probs=238.6
Q ss_pred ccCCCCccccccccchhHHhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHH
Q 036563 23 LLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRIL 102 (288)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~ 102 (288)
..+++.+||||+.+.++++++.+.++|++++..||.+++.|+.++|+.|++.++..+.+.+++++||++||||.++..++
T Consensus 40 ~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril 119 (296)
T KOG1540|consen 40 SVASKCTHFGFKTVRESEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRIL 119 (296)
T ss_pred ccccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC-CceEEEEcccccCCCCCCCeeEEEeccccc
Q 036563 103 DTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD-KSLLWVEGDAEALCFEDSTMDGYTIAFGIR 181 (288)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~ 181 (288)
++.+. ..++...+|+++|+|++|+..++++..+.++.+ .++.|+.+|++++||++++||.+++.+.+.
T Consensus 120 ~~v~s-----------~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIR 188 (296)
T KOG1540|consen 120 RHVKS-----------QFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIR 188 (296)
T ss_pred Hhhcc-----------ccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEeccee
Confidence 99741 011134899999999999999999998777762 349999999999999999999999999999
Q ss_pred cccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHH
Q 036563 182 NVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAM 261 (288)
Q Consensus 182 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (288)
++++++++|++++|+|||||+|.|.|++...++.+.++++.+.+.++|.+|.+..+++.+|+|+.++++++++.+++..+
T Consensus 189 N~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~m 268 (296)
T KOG1540|consen 189 NVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASM 268 (296)
T ss_pred cCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEE-EEEeeCCeeEEEEeeeC
Q 036563 262 ISDAGFQKVE-YENLVGGVVAIHSGLKI 288 (288)
Q Consensus 262 l~~aGf~~v~-~~~~~~~~~~~~~~~k~ 288 (288)
.+++||..+. ++++.+|+++||.+.|.
T Consensus 269 iedaGF~~~~~ye~lt~Gv~aIH~giK~ 296 (296)
T KOG1540|consen 269 IEDAGFSSVNGYENLTFGVVAIHSGIKL 296 (296)
T ss_pred HHHcCCccccccccceeeeeeeehhccC
Confidence 9999999997 99999999999998874
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=279.53 Aligned_cols=235 Identities=51% Similarity=0.814 Sum_probs=221.1
Q ss_pred ccchhHHhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhh
Q 036563 35 EVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQ 114 (288)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~ 114 (288)
.+....+.+.+.++|+++++.||.++++++.+.++.|++.++..+...++.+|||+|||||.++..+++..+
T Consensus 3 ~~~~~~k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-------- 74 (238)
T COG2226 3 MVAKDEKQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-------- 74 (238)
T ss_pred cccccccHHHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC--------
Confidence 345556678999999999999999999999999999999999999888899999999999999999999973
Q ss_pred cccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHH
Q 036563 115 DVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAY 194 (288)
Q Consensus 115 ~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~ 194 (288)
.++++++|+|+.|++.++++....+.. +++|+.+|++++|+++++||+|.+.+.+++++|++++|++++
T Consensus 75 ---------~g~v~~~D~s~~ML~~a~~k~~~~~~~--~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~ 143 (238)
T COG2226 75 ---------TGEVVGLDISESMLEVAREKLKKKGVQ--NVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMY 143 (238)
T ss_pred ---------CceEEEEECCHHHHHHHHHHhhccCcc--ceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHH
Confidence 689999999999999999999887765 499999999999999999999999999999999999999999
Q ss_pred hhccCCcEEEEEeccCCChHHHHHHHHHhhcc-ccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEE
Q 036563 195 RVLKRGGRFLCLELSHVDIPVFKELYDYYSFS-VIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYE 273 (288)
Q Consensus 195 ~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 273 (288)
|+|||||++++.|++.|..+++...+..+.+. ++|.++.+...+.+.|.|+.+++..+++.+++..+++++||..+..+
T Consensus 144 RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~ 223 (238)
T COG2226 144 RVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYE 223 (238)
T ss_pred HhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeE
Confidence 99999999999999999998888888877777 99999999999999999999999999999999999999999999999
Q ss_pred EeeCCeeEEEEeeeC
Q 036563 274 NLVGGVVAIHSGLKI 288 (288)
Q Consensus 274 ~~~~~~~~~~~~~k~ 288 (288)
++.+|++++|++.|+
T Consensus 224 ~~~~G~~~l~~g~K~ 238 (238)
T COG2226 224 NLTFGIVALHRGYKP 238 (238)
T ss_pred eeeeeeEEEEEEecC
Confidence 999999999999986
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=280.17 Aligned_cols=231 Identities=44% Similarity=0.762 Sum_probs=107.7
Q ss_pred hHHhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccc
Q 036563 39 EEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLE 118 (288)
Q Consensus 39 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~ 118 (288)
+.+++.+++.|+.++..||..++.++.+.++.|++.+.+.+...++.+|||+|||||..+..+++..+
T Consensus 3 ~~k~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~------------ 70 (233)
T PF01209_consen 3 EAKEQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVG------------ 70 (233)
T ss_dssp ----------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS------------
T ss_pred ccHHHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCC------------
Confidence 34567899999999999999999999999999999999988888899999999999999999988864
Q ss_pred cccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhcc
Q 036563 119 DDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLK 198 (288)
Q Consensus 119 ~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~ 198 (288)
+.++++++|+|+.|++.++++....+. .+++++++|++++|+++++||+|++.+.+++++|+.++|++++|+||
T Consensus 71 ----~~~~v~~vD~s~~ML~~a~~k~~~~~~--~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLk 144 (233)
T PF01209_consen 71 ----PNGKVVGVDISPGMLEVARKKLKREGL--QNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLK 144 (233)
T ss_dssp -------EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEE
T ss_pred ----CccEEEEecCCHHHHHHHHHHHHhhCC--CCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcC
Confidence 568999999999999999999987765 38999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCC
Q 036563 199 RGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGG 278 (288)
Q Consensus 199 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 278 (288)
|||.++++|++.|..+.+...+..|.+.++|.++.++.++.+.|.|+.+++.+|++.+++.++|+++||+.++.+++.+|
T Consensus 145 PGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G 224 (233)
T PF01209_consen 145 PGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFG 224 (233)
T ss_dssp EEEEEEEEEEEB-SSHHHHHHHHH--------------------------------------------------------
T ss_pred CCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeee
Q 036563 279 VVAIHSGLK 287 (288)
Q Consensus 279 ~~~~~~~~k 287 (288)
++.+|+|.|
T Consensus 225 ~~~i~~g~K 233 (233)
T PF01209_consen 225 IVTIHVGTK 233 (233)
T ss_dssp ---------
T ss_pred cccccccCC
Confidence 999999987
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-31 Score=230.05 Aligned_cols=231 Identities=29% Similarity=0.484 Sum_probs=194.6
Q ss_pred hHHhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccc
Q 036563 39 EEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLE 118 (288)
Q Consensus 39 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~ 118 (288)
-...+.+++.|+.++..||..++.++.+.++.|++.+.+.+...++.+|||+|||+|.++..+++..+
T Consensus 29 ~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~------------ 96 (261)
T PLN02233 29 VKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVG------------ 96 (261)
T ss_pred hhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhC------------
Confidence 34467789999999999999888888888888988777777777888999999999999988888753
Q ss_pred cccCCCceEEEEeCChhHHHHHHHHhhh--cCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhh
Q 036563 119 DDLQEETRIYVCDINPNMLNVGKKRALE--RGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRV 196 (288)
Q Consensus 119 ~~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~ 196 (288)
+..+++++|+|++|++.++++... .... .+++++.+|+.++++++++||+|++++++++++++..+++++.++
T Consensus 97 ----~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~-~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rv 171 (261)
T PLN02233 97 ----SDGKVMGLDFSSEQLAVAASRQELKAKSCY-KNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRV 171 (261)
T ss_pred ----CCCEEEEEECCHHHHHHHHHHhhhhhhccC-CCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHH
Confidence 357999999999999999877531 1111 479999999999999989999999999999999999999999999
Q ss_pred ccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 197 LKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 197 L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
|||||.+++.++..+...+...+...+.....+.++... +..+.|.|+.+++.++++.+++.++|+++||++++...+.
T Consensus 172 LkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~ 250 (261)
T PLN02233 172 LKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGY-GLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEIS 250 (261)
T ss_pred cCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHh-CChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcC
Confidence 999999999999988777666665555444444444433 3356788899999999999999999999999999999999
Q ss_pred CCeeEEEEeee
Q 036563 277 GGVVAIHSGLK 287 (288)
Q Consensus 277 ~~~~~~~~~~k 287 (288)
+|...++++++
T Consensus 251 ~g~~~~~~~~~ 261 (261)
T PLN02233 251 GGLMGNLVATR 261 (261)
T ss_pred CCeeEEEEEeC
Confidence 99999999875
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-30 Score=218.91 Aligned_cols=230 Identities=38% Similarity=0.657 Sum_probs=201.1
Q ss_pred HHhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhccccc
Q 036563 40 EKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLED 119 (288)
Q Consensus 40 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~ 119 (288)
.+.+.+.++|+.++..||..+..++...+..|++.++..+...++.+|||+|||+|.++..+++..+
T Consensus 2 ~~~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~------------- 68 (231)
T TIGR02752 2 SKEERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVG------------- 68 (231)
T ss_pred chHHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhC-------------
Confidence 4578899999999999999988888888888998899999888889999999999999999998864
Q ss_pred ccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccC
Q 036563 120 DLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKR 199 (288)
Q Consensus 120 ~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~p 199 (288)
+..+++++|+++++++.++++....+. +++.++.+|+...++++++||+|++.+++++.++...+++++.++|+|
T Consensus 69 ---~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~ 143 (231)
T TIGR02752 69 ---PEGHVIGLDFSENMLSVGRQKVKDAGL--HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKP 143 (231)
T ss_pred ---CCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCc
Confidence 457999999999999999998876655 479999999988887788999999999999999999999999999999
Q ss_pred CcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCe
Q 036563 200 GGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGV 279 (288)
Q Consensus 200 gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~ 279 (288)
||.+++.+...+....+......+.....+..+..+......+.++.+...++++.+++.++|+++||+++++..+.+|.
T Consensus 144 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~ 223 (231)
T TIGR02752 144 GGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGV 223 (231)
T ss_pred CeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccce
Confidence 99999998887777767766666665666767766665556666777788889999999999999999999999999999
Q ss_pred eEEEEeee
Q 036563 280 VAIHSGLK 287 (288)
Q Consensus 280 ~~~~~~~k 287 (288)
..+++++|
T Consensus 224 ~~~~~~~~ 231 (231)
T TIGR02752 224 AAMHMGFK 231 (231)
T ss_pred EEEEEEEC
Confidence 99999987
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=219.01 Aligned_cols=217 Identities=23% Similarity=0.312 Sum_probs=191.1
Q ss_pred HHhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCC--CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhccc
Q 036563 40 EKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNP--FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVL 117 (288)
Q Consensus 40 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~ 117 (288)
.+.+.+++.|+.++..||..++.++.+.+..|++.+++.+.. .++.+|||+|||||..+..+++..
T Consensus 6 ~~~~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~------------ 73 (226)
T PRK05785 6 ATWEELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF------------ 73 (226)
T ss_pred ccHHHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc------------
Confidence 345788999999999999999888888888888877765532 346799999999999999888764
Q ss_pred ccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhc
Q 036563 118 EDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVL 197 (288)
Q Consensus 118 ~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L 197 (288)
+.+++++|+|++|++.++++ ..++++|++.+++++++||+|++.+++++++++..++++++|+|
T Consensus 74 ------~~~v~gvD~S~~Ml~~a~~~----------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvL 137 (226)
T PRK05785 74 ------KYYVVALDYAENMLKMNLVA----------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVS 137 (226)
T ss_pred ------CCEEEEECCCHHHHHHHHhc----------cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHh
Confidence 26899999999999998763 13467899999999999999999999999999999999999999
Q ss_pred cCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC
Q 036563 198 KRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277 (288)
Q Consensus 198 ~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 277 (288)
||. +.+++++.|+....+.+...|...++|.++.++.++.+.|.|+.+++..|++.+++.++|+++| ..++.+++.+
T Consensus 138 kp~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~ 214 (226)
T PRK05785 138 RKQ--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGL 214 (226)
T ss_pred cCc--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccc
Confidence 993 4456788888888888888888889999999999999999999999999999999999999984 7799999999
Q ss_pred CeeEEEEeee
Q 036563 278 GVVAIHSGLK 287 (288)
Q Consensus 278 ~~~~~~~~~k 287 (288)
|++++++++|
T Consensus 215 G~~~~~~~~k 224 (226)
T PRK05785 215 GLVYFVVGSS 224 (226)
T ss_pred cEEEEEEEee
Confidence 9999999998
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=195.67 Aligned_cols=233 Identities=48% Similarity=0.817 Sum_probs=189.3
Q ss_pred hHHhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccc
Q 036563 39 EEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLE 118 (288)
Q Consensus 39 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~ 118 (288)
+.+++.+.+.|+.++..|+..+..+..+.+..+...++..+...++.+|||+|||+|.++..+++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~------------ 74 (239)
T PRK00216 7 EEKQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVG------------ 74 (239)
T ss_pred ccchHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcC------------
Confidence 45677889999999999997666555566677777777777776778999999999999999988862
Q ss_pred cccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhcc
Q 036563 119 DDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLK 198 (288)
Q Consensus 119 ~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~ 198 (288)
+..+++++|+++.+++.++++....+.. .++.+..+|+.+.+++.++||+|++..++++..++..+++++.++|+
T Consensus 75 ----~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~ 149 (239)
T PRK00216 75 ----KTGEVVGLDFSEGMLAVGREKLRDLGLS-GNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLK 149 (239)
T ss_pred ----CCCeEEEEeCCHHHHHHHHHhhcccccc-cCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhcc
Confidence 2589999999999999999987665443 57899999998877767789999999999999999999999999999
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCC
Q 036563 199 RGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGG 278 (288)
Q Consensus 199 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 278 (288)
|||.+++.+...+....+......+.....+..+..+......+.+..+.+..+++.+++.++|+++||+++....+.+|
T Consensus 150 ~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~ 229 (239)
T PRK00216 150 PGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGG 229 (239)
T ss_pred CCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecC
Confidence 99999998887776554444444443333444444444444555556666777889999999999999999999999999
Q ss_pred eeEEEEeeeC
Q 036563 279 VVAIHSGLKI 288 (288)
Q Consensus 279 ~~~~~~~~k~ 288 (288)
.++++.++||
T Consensus 230 ~~~~~~~~~~ 239 (239)
T PRK00216 230 IVALHVGYKP 239 (239)
T ss_pred cEEEEEEecC
Confidence 9999999986
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=183.82 Aligned_cols=222 Identities=47% Similarity=0.799 Sum_probs=183.3
Q ss_pred HHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCc
Q 036563 46 SNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEET 125 (288)
Q Consensus 46 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
.++|+.++..||..+..+....+..+.+.+...+...++.+|||+|||+|..+..+++..+ ...
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~----------------~~~ 65 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAP----------------DRG 65 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcC----------------CCc
Confidence 5689999999999887777676777888888887777788999999999999999988863 226
Q ss_pred eEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 126 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+++++|+++.+++.++++.. .. .++.+..+|+.+.+++.++||+|++...+++..++..+++++.+.|+|||.+++
T Consensus 66 ~~~~iD~~~~~~~~~~~~~~---~~-~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 66 KVTGVDFSSEMLEVAKKKSE---LP-LNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred eEEEEECCHHHHHHHHHHhc---cC-CCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 89999999999999988765 11 578999999988777777899999999999999999999999999999999999
Q ss_pred EeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEe
Q 036563 206 LELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSG 285 (288)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~ 285 (288)
.+...+....+......+.....+.++.........+.+..++...+++.++|+++|+++||+++..+++.++++.++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~ 221 (223)
T TIGR01934 142 LEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVG 221 (223)
T ss_pred EEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEe
Confidence 88877655545555555544444555555555555666666777778899999999999999999999999999999998
Q ss_pred ee
Q 036563 286 LK 287 (288)
Q Consensus 286 ~k 287 (288)
+|
T Consensus 222 ~~ 223 (223)
T TIGR01934 222 KK 223 (223)
T ss_pred cC
Confidence 76
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-22 Score=178.20 Aligned_cols=201 Identities=15% Similarity=0.177 Sum_probs=148.1
Q ss_pred hHHhHHHHHHHhHhhHHHhhhh-hhhhhh-------------hhHHHHHHHHhhcCC-----CCCCeEEEecCCccHHHH
Q 036563 39 EEKSQLVSNVFSSVAKNYDLMN-DLMSGG-------------LHRLWKDRLVSKLNP-----FPGMKHLDVAGGTGDVAF 99 (288)
Q Consensus 39 ~~~~~~~~~~~~~~~~~y~~~~-~~~~~~-------------~~~~~~~~~~~~l~~-----~~~~~vLDiG~G~G~~~~ 99 (288)
..-.+.+..+|+..+..|+..- ..+..+ .+....+.+++.+.. .++.+|||||||+|.++.
T Consensus 55 ~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~ 134 (340)
T PLN02244 55 ADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSR 134 (340)
T ss_pred hhHHHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHH
Confidence 3345678899998888887532 111111 112233445555554 567899999999999999
Q ss_pred HHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccc
Q 036563 100 RILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFG 179 (288)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~ 179 (288)
.+++.+ +.+++++|+++.|++.+++.....++. +++++..+|+.++++++++||+|++..+
T Consensus 135 ~La~~~------------------g~~v~gvD~s~~~i~~a~~~~~~~g~~-~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 135 YLARKY------------------GANVKGITLSPVQAARANALAAAQGLS-DKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred HHHHhc------------------CCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEcCcccCCCCCCCccEEEECCc
Confidence 999875 379999999999999999988777665 6799999999998888899999999999
Q ss_pred cccccCHHHHHHHHHhhccCCcEEEEEeccCCChH--------HHHHHHHHhhccccccccccccCCCcchhhhHHHHhc
Q 036563 180 IRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIP--------VFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRR 251 (288)
Q Consensus 180 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
++|+++...+++++.++|||||.+++.++...... .......... . .+ ....
T Consensus 196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~--------~-------~~-----~~p~ 255 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKIC--------A-------AY-----YLPA 255 (340)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHH--------h-------hc-----cCCC
Confidence 99999999999999999999999999876542110 0011111100 0 00 0012
Q ss_pred CCChHHHHHHHHHcCCcEEEEEEeeCC
Q 036563 252 FPPQEKFAAMISDAGFQKVEYENLVGG 278 (288)
Q Consensus 252 ~~~~~~~~~~l~~aGf~~v~~~~~~~~ 278 (288)
+.+.+++.++++++||.+++..++...
T Consensus 256 ~~s~~~~~~~l~~aGf~~v~~~d~s~~ 282 (340)
T PLN02244 256 WCSTSDYVKLAESLGLQDIKTEDWSEH 282 (340)
T ss_pred CCCHHHHHHHHHHCCCCeeEeeeCcHH
Confidence 347899999999999999999887654
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=153.29 Aligned_cols=158 Identities=27% Similarity=0.432 Sum_probs=132.3
Q ss_pred EEEeCChhHHHHHHHHhhhcC--CCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 128 YVCDINPNMLNVGKKRALERG--YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 128 ~~~D~s~~~~~~a~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+|+|+|++|++.|+++....+ .. .+++++++|+.++++++++||+|++.+++++++|+..++++++++|||||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~-~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCY-KCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCC-CceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 489999999999987764322 11 479999999999999888999999999999999999999999999999999999
Q ss_pred EeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEe
Q 036563 206 LELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSG 285 (288)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~ 285 (288)
.++..++..........+.....+..+. +......|.|+.+++..+++.+++.++|+++||+.+....+.+|+++++++
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 158 (160)
T PLN02232 80 LDFNKSNQSVTTFMQGWMIDNVVVPVAT-VYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVA 158 (160)
T ss_pred EECCCCChHHHHHHHHHHccchHhhhhH-HhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEe
Confidence 9999877655554444443333344444 344577899999999999999999999999999999999999999999998
Q ss_pred ee
Q 036563 286 LK 287 (288)
Q Consensus 286 ~k 287 (288)
.|
T Consensus 159 ~~ 160 (160)
T PLN02232 159 MR 160 (160)
T ss_pred eC
Confidence 75
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=160.40 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=120.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++....+.. .++.+..+|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-------------------g~~V~GID~s~~~i~~Ar~~~~~~~~~-~~i~~~~~da 189 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-------------------GATVTGVDAVDKNVKIARLHADMDPVT-STIEYLCTTA 189 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-------------------CCEEEEEeCCHHHHHHHHHHHHhcCcc-cceeEEecCH
Confidence 35679999999999999888764 379999999999999999876544332 4789999999
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHH-HHhhccccccccccccCCCc
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELY-DYYSFSVIPAIGELVAGDRG 240 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 240 (288)
+++++.+++||+|++..+++|+.++..+++++.++|||||.+++.........+..... ..+....++ .+..
T Consensus 190 e~l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp------~gth- 262 (322)
T PLN02396 190 EKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLP------KGTH- 262 (322)
T ss_pred HHhhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCC------CCCc-
Confidence 88887778999999999999999999999999999999999998776553222221111 111101111 1111
Q ss_pred chhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 241 SYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
. +..+++++++.++|+++||+++++.-+
T Consensus 263 ~-------~~~f~tp~eL~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 263 Q-------WSSFVTPEELSMILQRASVDVKEMAGF 290 (322)
T ss_pred C-------ccCCCCHHHHHHHHHHcCCeEEEEeee
Confidence 1 123679999999999999999887544
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-20 Score=163.25 Aligned_cols=181 Identities=25% Similarity=0.367 Sum_probs=133.9
Q ss_pred HHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCC-CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCC
Q 036563 46 SNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNP-FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEE 124 (288)
Q Consensus 46 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (288)
..+|+..+..||.... .....+.+++.+++.... .++.+|||+|||+|.++..+++.. +.
T Consensus 77 ~~~y~~lA~~YD~~~~--~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~-----------------~~ 137 (340)
T PLN02490 77 FWFYRFLSIVYDHIIN--PGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHV-----------------DA 137 (340)
T ss_pred eeEccceeeecCCCee--cCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHC-----------------CC
Confidence 3355666777775322 112234444445554443 456799999999999999888875 34
Q ss_pred ceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEE
Q 036563 125 TRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 125 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
.+++++|++++|++.++++... .+++++.+|++++++++++||+|+++.+++++++...+++++.++|+|||.++
T Consensus 138 ~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~Lv 212 (340)
T PLN02490 138 KNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKAC 212 (340)
T ss_pred CEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEE
Confidence 7899999999999999887542 46889999999888888899999999999999999999999999999999998
Q ss_pred EEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 205 CLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 205 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
+++...+... ....... ....+++.+++.++|+++||+.+++..+.
T Consensus 213 Ii~~~~p~~~-~~r~~~~-------------------------~~~~~~t~eEl~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 213 LIGPVHPTFW-LSRFFAD-------------------------VWMLFPKEEEYIEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred EEEecCcchh-HHHHhhh-------------------------hhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence 8765544321 1111000 00114578999999999999999988754
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-19 Score=154.53 Aligned_cols=177 Identities=21% Similarity=0.329 Sum_probs=137.2
Q ss_pred hHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhccccccc
Q 036563 42 SQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDL 121 (288)
Q Consensus 42 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~ 121 (288)
++.+.+.|++.+..|+... ..++...+.+.+.+...++.+|||+|||+|.++..+.+.
T Consensus 6 k~~i~~~F~~aa~~Y~~~~-----~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----------------- 63 (251)
T PRK10258 6 KQAIAAAFGRAAAHYEQHA-----ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER----------------- 63 (251)
T ss_pred HHHHHHHHHHHHHhHhHHH-----HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-----------------
Confidence 5678899999999998643 345666677778887666789999999999998877654
Q ss_pred CCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCc
Q 036563 122 QEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGG 201 (288)
Q Consensus 122 ~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG 201 (288)
+.+++++|+|+.|++.++++.. ...++.+|++.+++++++||+|+++.++++.+++..++.++.++|+|||
T Consensus 64 --~~~v~~~D~s~~~l~~a~~~~~-------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG 134 (251)
T PRK10258 64 --GSQVTALDLSPPMLAQARQKDA-------ADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGG 134 (251)
T ss_pred --CCeEEEEECCHHHHHHHHhhCC-------CCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCe
Confidence 3799999999999999987642 3467889999888888899999999999999999999999999999999
Q ss_pred EEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcE
Q 036563 202 RFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQK 269 (288)
Q Consensus 202 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 269 (288)
.+++..+.....+.+...+.... . . .....+++.+++.++|+..|+..
T Consensus 135 ~l~~~~~~~~~~~el~~~~~~~~--------~----~--------~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 135 VVAFTTLVQGSLPELHQAWQAVD--------E----R--------PHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred EEEEEeCCCCchHHHHHHHHHhc--------c----C--------CccccCCCHHHHHHHHHhCCcee
Confidence 99987776554333333222110 0 0 01123668899999999888763
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=157.32 Aligned_cols=162 Identities=20% Similarity=0.292 Sum_probs=126.2
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+.++..+...++.+|||||||+|..+..++... ..+++++|+++.|++.++++....
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~------------------~~~v~giD~s~~~~~~a~~~~~~~---- 98 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKY------------------GAHVHGVDICEKMVNIAKLRNSDK---- 98 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc------------------CCEEEEEECCHHHHHHHHHHcCcC----
Confidence 3567777888888999999999999998887754 379999999999999999876542
Q ss_pred CceEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIP 229 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 229 (288)
.++.+..+|+...++++++||+|++..+++|++ +...++++++++|||||.+++.++..............+.
T Consensus 99 ~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~----- 173 (263)
T PTZ00098 99 NKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYI----- 173 (263)
T ss_pred CceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHH-----
Confidence 579999999988888888999999998888875 7889999999999999999998875543211111111110
Q ss_pred cccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 230 AIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
......+.+.+++.++|+++||++++..+..
T Consensus 174 ----------------~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 174 ----------------KKRKYTLIPIQEYGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred ----------------HhcCCCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence 0001124588999999999999999988754
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-19 Score=155.89 Aligned_cols=170 Identities=16% Similarity=0.271 Sum_probs=121.6
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+++.+. .++.+|||+|||+|.++..+++.. .+++++|+|+.|++.++++....++. ++
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g-------------------~~v~~vD~s~~~l~~a~~~~~~~g~~-~~ 94 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQTAIKLAELG-------------------HQVILCDLSAEMIQRAKQAAEAKGVS-DN 94 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchHHHHHHHHcC-------------------CEEEEEECCHHHHHHHHHHHHhcCCc-cc
Confidence 3445554 446799999999999999998863 79999999999999999998877765 67
Q ss_pred eEEEEcccccCC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 154 LLWVEGDAEALC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 154 v~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
++++.+|+.+++ +.+++||+|++..+++++.++..+++++.++|+|||.++++..... .......... ......
T Consensus 95 v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~-~~~~~~~~~~----~~~~~~ 169 (255)
T PRK11036 95 MQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN-GLLMHNMVAG----NFDYVQ 169 (255)
T ss_pred eEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc-HHHHHHHHcc----ChHHHH
Confidence 899999987763 5567899999999999999999999999999999999998755542 1111111100 000000
Q ss_pred -ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 233 -ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 233 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
.+........ ......+++++.++|+++||+++...-
T Consensus 170 ~~~~~~~~~~~-----~p~~~~~~~~l~~~l~~aGf~~~~~~g 207 (255)
T PRK11036 170 AGMPKRKKRTL-----SPDYPLDPEQVYQWLEEAGWQIMGKTG 207 (255)
T ss_pred hcCccccccCC-----CCCCCCCHHHHHHHHHHCCCeEeeeee
Confidence 0000000000 001245889999999999999887653
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-20 Score=158.54 Aligned_cols=172 Identities=19% Similarity=0.267 Sum_probs=119.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|..+..+++... .++.+++++|+|+.|++.++++....+.. .+++++.+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~---------------~~~~~v~gvD~S~~ml~~A~~~~~~~~~~-~~v~~~~~d~ 118 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIH---------------HDNCKIIAIDNSPAMIERCRRHIDAYKAP-TPVDVIEGDI 118 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcC---------------CCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEeCCh
Confidence 3567999999999999988877431 04689999999999999999998876654 5799999999
Q ss_pred ccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCChHHHHH-HHHHhhccccccccccccCC
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKE-LYDYYSFSVIPAIGELVAGD 238 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 238 (288)
...+++ .+|+|+++.++|++++ ...+++++++.|+|||.+++.+......+.... ....+. ......|. ....
T Consensus 119 ~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~-~~~~~~g~-s~~e 194 (247)
T PRK15451 119 RDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHH-DFKRANGY-SELE 194 (247)
T ss_pred hhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHH-HHHHHcCC-CHHH
Confidence 887654 4999999999998864 467999999999999999998865544333322 222111 00000110 0000
Q ss_pred CcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEE
Q 036563 239 RGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYE 273 (288)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 273 (288)
-.......+.+....+.++..++|+++||+.++..
T Consensus 195 i~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 195 ISQKRSMLENVMLTDSVETHKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHcCchhHHHH
Confidence 00001111223334689999999999999876653
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=149.85 Aligned_cols=165 Identities=15% Similarity=0.164 Sum_probs=115.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+++.+...++.+|||+|||+|.++..+++.. ++.+++++|+|+.|++.+++.
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-----------------p~~~v~gvD~s~~~~~~a~~~--------- 72 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRW-----------------PGAVIEALDSSPEMVAAARER--------- 72 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHhc---------
Confidence 346677777778899999999999999998876 468999999999999988652
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
++.+..+|+..+. ++++||+|+++.++|+++++..+++++.++|+|||.+++........+.... ....... ....
T Consensus 73 ~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~--~~w~ 148 (255)
T PRK14103 73 GVDARTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAA-VRALARR--EPWA 148 (255)
T ss_pred CCcEEEcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHH-HHHHhcc--Cchh
Confidence 5788999988764 4568999999999999999999999999999999999976433212111111 1111000 0000
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEE
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYE 273 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 273 (288)
....... + .....+.+.+++.++|+++||++...+
T Consensus 149 ~~~~~~~--~----~~~~~~~~~~~~~~~l~~aGf~v~~~~ 183 (255)
T PRK14103 149 KLLRDIP--F----RVGAVVQTPAGYAELLTDAGCKVDAWE 183 (255)
T ss_pred HHhcccc--c----ccCcCCCCHHHHHHHHHhCCCeEEEEe
Confidence 0000000 0 001124588999999999999865443
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.5e-19 Score=151.72 Aligned_cols=181 Identities=15% Similarity=0.112 Sum_probs=123.9
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|..+..+++.... ++.+++++|+|+.|++.+++++...+.. .++.++.+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~---------------p~~~v~gvD~s~~ml~~a~~~~~~~~~~-~~v~~~~~d~ 115 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQ---------------PNVKIIGIDNSQPMVERCRQHIAAYHSE-IPVEILCNDI 115 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCC---------------CCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECCh
Confidence 35679999999999999999887420 4689999999999999999988765443 5789999999
Q ss_pred ccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHH-HHHHhhccccccccccccCC
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKE-LYDYYSFSVIPAIGELVAGD 238 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 238 (288)
...+++ .+|+|++..++++++ +...+++++.+.|+|||.+++.+...+....... +...+.. ....-+ ..
T Consensus 116 ~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~-~~~~~g----~~ 188 (239)
T TIGR00740 116 RHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQ-FKRANG----YS 188 (239)
T ss_pred hhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHH-HHHHcC----CC
Confidence 887754 489999999999886 4578999999999999999998876544332222 1111110 000000 00
Q ss_pred Ccch---hhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEee
Q 036563 239 RGSY---QYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGL 286 (288)
Q Consensus 239 ~~~~---~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~ 286 (288)
.... ........+..+.+++.++++++||+.++..... +.++.|.++
T Consensus 189 ~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~~~~~~-~~~~~~~~~ 238 (239)
T TIGR00740 189 ELEISQKRTALENVMRTDSIETHKARLKNVGFSHVELWFQC-FNFGSLVAV 238 (239)
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHHHHHHH-HhHhHHhee
Confidence 0001 0111123346799999999999999977654332 333444444
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-18 Score=160.56 Aligned_cols=161 Identities=23% Similarity=0.331 Sum_probs=124.7
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+++.+...++.+|||||||+|..+..+++.. +.+++++|+|+.+++.++++..... .
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~------------------~~~v~gvDiS~~~l~~A~~~~~~~~---~ 314 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF------------------DVHVVGIDLSVNMISFALERAIGRK---C 314 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc------------------CCEEEEEECCHHHHHHHHHHhhcCC---C
Confidence 456666666677899999999999998888775 3799999999999999988764332 4
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
++.+..+|+...++++++||+|++..+++|++++..++++++++|+|||.+++.++................
T Consensus 315 ~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-------- 386 (475)
T PLN02336 315 SVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIK-------- 386 (475)
T ss_pred ceEEEEcCcccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHH--------
Confidence 789999999888877788999999999999999999999999999999999988765432211111111110
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
.....+++.+++.++++++||+++..+.+.
T Consensus 387 --------------~~g~~~~~~~~~~~~l~~aGF~~i~~~d~~ 416 (475)
T PLN02336 387 --------------QRGYDLHDVQAYGQMLKDAGFDDVIAEDRT 416 (475)
T ss_pred --------------hcCCCCCCHHHHHHHHHHCCCeeeeeecch
Confidence 000124578899999999999999876643
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=144.28 Aligned_cols=166 Identities=22% Similarity=0.241 Sum_probs=117.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.+.+..+++.+|||||||.|.++..+++..+ ++|+++.+|++..+.+++++...++. +
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g------------------~~v~gitlS~~Q~~~a~~~~~~~gl~-~ 112 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG------------------CHVTGITLSEEQAEYARERIREAGLE-D 112 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--------------------EEEEEES-HHHHHHHHHHHHCSTSS-S
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC------------------cEEEEEECCHHHHHHHHHHHHhcCCC-C
Confidence 5677888889999999999999999999999974 89999999999999999999999887 7
Q ss_pred ceEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPA 230 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (288)
++.+...|..+++. +||.|++..+++|+. +...+++++.++|+|||.+++..++.+......... ...+.
T Consensus 113 ~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~-----~~~~~ 184 (273)
T PF02353_consen 113 RVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERR-----SSSDF 184 (273)
T ss_dssp TEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTT-----CCCHH
T ss_pred ceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcC-----CCceE
Confidence 89999999887643 899999999999994 678999999999999999998777765443322000 00000
Q ss_pred ccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 231 IGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
+.+.+.... .+++..++...++++||++..+.++.
T Consensus 185 i~kyiFPgg-----------~lps~~~~~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 185 IRKYIFPGG-----------YLPSLSEILRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHTSTTS--------------BHHHHHHHHHHTT-EEEEEEE-H
T ss_pred EEEeeCCCC-----------CCCCHHHHHHHHhcCCEEEEEEEEcC
Confidence 111111111 15578889999999999999888764
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-17 Score=140.43 Aligned_cols=166 Identities=28% Similarity=0.420 Sum_probs=125.7
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..+++.+.+.+...++.+|||+|||+|.++..+++..+ +..+++++|+++.+++.++++.....
T Consensus 5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~----------------~~~~v~~~d~~~~~~~~a~~~~~~~~ 68 (241)
T PRK08317 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVG----------------PEGRVVGIDRSEAMLALAKERAAGLG 68 (241)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcC----------------CCcEEEEEeCCHHHHHHHHHHhhCCC
Confidence 34456677778888889999999999999999988763 45799999999999999988732221
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCC-------ChHHHHHHHH
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHV-------DIPVFKELYD 221 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~-------~~~~~~~~~~ 221 (288)
.++.+...|+...++++++||+|++..+++++.++..+++++.++|+|||.+++.+.... ..........
T Consensus 69 ---~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (241)
T PRK08317 69 ---PNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILN 145 (241)
T ss_pred ---CceEEEecccccCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHH
Confidence 578999999988777778999999999999999999999999999999999998765321 1112222222
Q ss_pred HhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 222 YYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
.+.. ..........+.++|+++||.++.....
T Consensus 146 ~~~~----------------------~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 146 FWSD----------------------HFADPWLGRRLPGLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHh----------------------cCCCCcHHHHHHHHHHHcCCCceeEEEE
Confidence 2110 0011224568899999999998877654
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.4e-18 Score=134.85 Aligned_cols=108 Identities=29% Similarity=0.410 Sum_probs=96.1
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.+|||+|||+|.++..+++... +..+++++|+++.|++.+++.+...+.+ ++++..+|+.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~----------------~~~~i~gvD~s~~~i~~a~~~~~~~~~~--ni~~~~~d~~ 64 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELN----------------PGAKIIGVDISEEMIEYAKKRAKELGLD--NIEFIQGDIE 64 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHST----------------TTSEEEEEESSHHHHHHHHHHHHHTTST--TEEEEESBTT
T ss_pred CCCEEEEecCcCcHHHHHHHHhcC----------------CCCEEEEEECcHHHHHHhhccccccccc--ccceEEeehh
Confidence 467999999999999999996543 5689999999999999999998888774 8999999999
Q ss_pred cCC--CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 163 ALC--FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 163 ~~~--~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+++ ++ +.||+|++..+++++.++..+++++.+.|+++|.+++.+..
T Consensus 65 ~l~~~~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 65 DLPQELE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp CGCGCSS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccccC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 876 44 68999999999999999999999999999999999988776
|
... |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-17 Score=145.80 Aligned_cols=163 Identities=17% Similarity=0.111 Sum_probs=115.5
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+...+...++.+|||+|||+|.++..++... ...++|+|+|+.|+..++......... .
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g------------------~~~v~GiDpS~~ml~q~~~~~~~~~~~-~ 171 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHG------------------AKSLVGIDPTVLFLCQFEAVRKLLDND-K 171 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcC------------------CCEEEEEcCCHHHHHHHHHHHHHhccC-C
Confidence 345566666778899999999999988887763 257999999999987654322211111 4
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChH-HHHHHHHHhhccccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIP-VFKELYDYYSFSVIPAI 231 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~-~~~~~~~~~~~~~~~~~ 231 (288)
++.+..+++++++.. .+||+|++..+++|..++..+|+++++.|+|||.+++.+....... ........
T Consensus 172 ~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~r--------- 241 (314)
T TIGR00452 172 RAILEPLGIEQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDR--------- 241 (314)
T ss_pred CeEEEECCHHHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHH---------
Confidence 678888888887654 4799999999999999999999999999999999997654322110 00000000
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
|... ..+..+++..++.++|+++||+.+++...
T Consensus 242 ----------y~k~-~nv~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 242 ----------YAKM-KNVYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred ----------HHhc-cccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 0000 00112458899999999999999988654
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=149.72 Aligned_cols=164 Identities=19% Similarity=0.134 Sum_probs=118.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+...++..++.+|||||||+|.++..++.... ..|+|+|+|+.++..++......+.. .
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~------------------~~V~GiD~S~~~l~q~~a~~~~~~~~-~ 172 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA------------------KLVVGIDPSQLFLCQFEAVRKLLGND-Q 172 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC------------------CEEEEEcCCHHHHHHHHHHHHhcCCC-C
Confidence 3455566666778999999999999999888742 46999999999987654432222111 5
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHH-HHHHHhhccccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFK-ELYDYYSFSVIPAI 231 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ 231 (288)
++.+..+|++.+++ .++||+|++..+++|..++..+|+++++.|+|||.+++.+.......... .....+.
T Consensus 173 ~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~------- 244 (322)
T PRK15068 173 RAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYA------- 244 (322)
T ss_pred CeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHh-------
Confidence 79999999998887 67899999999999999999999999999999999987544322111000 0000010
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
.. .....+++.+++.++|+++||+++++....
T Consensus 245 ------------~~-~~~~~lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 245 ------------KM-RNVYFIPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred ------------cC-ccceeCCCHHHHHHHHHHcCCceEEEEeCC
Confidence 00 001124588999999999999999887653
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-18 Score=136.71 Aligned_cols=150 Identities=24% Similarity=0.330 Sum_probs=106.4
Q ss_pred HHHHHhhcC-CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 72 KDRLVSKLN-PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 72 ~~~~~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
.+.+....+ ..++.+|||+|||+|.++..+.+. +.+++++|+++.+++. .
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-------------------~~~~~g~D~~~~~~~~-------~--- 60 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR-------------------GFEVTGVDISPQMIEK-------R--- 60 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-------------------TSEEEEEESSHHHHHH-------T---
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-------------------CCEEEEEECCHHHHhh-------h---
Confidence 333444443 466789999999999999988555 2699999999999887 1
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccc
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPA 230 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (288)
++.....+......++++||+|++..+++|++++..+|+++.++|+|||++++.+..... . .......+...
T Consensus 61 --~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~-~-~~~~~~~~~~~---- 132 (161)
T PF13489_consen 61 --NVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD-P-SPRSFLKWRYD---- 132 (161)
T ss_dssp --TSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS-H-HHHHHHHCCGT----
T ss_pred --hhhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc-h-hhhHHHhcCCc----
Confidence 233333333334456779999999999999999999999999999999999988776533 1 11111211100
Q ss_pred ccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEE
Q 036563 231 IGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVE 271 (288)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 271 (288)
........+++.+++.++++++||++++
T Consensus 133 -------------~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 133 -------------RPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp -------------CHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred -------------CccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 0000112356899999999999999886
|
... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-17 Score=143.90 Aligned_cols=157 Identities=26% Similarity=0.366 Sum_probs=119.9
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
...++.+|||+|||+|..+..++...+ +..+++++|+++.|++.++++....++ +++.+..+
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g----------------~~~~v~gvD~s~~~l~~A~~~~~~~g~--~~v~~~~~ 135 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVG----------------PTGKVIGVDMTPEMLAKARANARKAGY--TNVEFRLG 135 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhC----------------CCCEEEEECCCHHHHHHHHHHHHHcCC--CCEEEEEc
Confidence 456788999999999998887777654 456899999999999999998877666 47899999
Q ss_pred ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCC
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDR 239 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (288)
|++.+++++++||+|+++.++++.++...+++++.++|||||++++.+........ ........ ..+.
T Consensus 136 d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~-~~~~~~~~-----~~~~------ 203 (272)
T PRK11873 136 EIEALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELP-EEIRNDAE-----LYAG------ 203 (272)
T ss_pred chhhCCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCC-HHHHHhHH-----HHhc------
Confidence 99988888889999999999999999999999999999999999997765432111 11111000 0000
Q ss_pred cchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 240 GSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
......+.+++.++|+++||..+++..
T Consensus 204 --------~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 204 --------CVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred --------cccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 001133678899999999999887643
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-17 Score=132.77 Aligned_cols=169 Identities=20% Similarity=0.178 Sum_probs=128.8
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE-E
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL-W 156 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~-~ 156 (288)
.+.......|||+|||||..-...-.. |...++++|++++|.+.+.+.+.+... .++. |
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~------------------p~~svt~lDpn~~mee~~~ks~~E~k~--~~~~~f 130 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPWK------------------PINSVTCLDPNEKMEEIADKSAAEKKP--LQVERF 130 (252)
T ss_pred HhcccCccceEEecccCCCCcccccCC------------------CCceEEEeCCcHHHHHHHHHHHhhccC--cceEEE
Confidence 344444456899999999764332222 679999999999999999999887743 4666 8
Q ss_pred EEcccccCC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccc
Q 036563 157 VEGDAEALC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELV 235 (288)
Q Consensus 157 ~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (288)
+.++.++++ +++.++|.|++.+++....++.+.|+++.++|+|||.++++|.......++..+.....-......
T Consensus 131 vva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~---- 206 (252)
T KOG4300|consen 131 VVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLE---- 206 (252)
T ss_pred EeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhhee----
Confidence 899999987 788999999999999999999999999999999999999999999888888777776541111000
Q ss_pred cCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEE
Q 036563 236 AGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIH 283 (288)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~ 283 (288)
.+.. -.+.+ ..+.|+++.|+.++.+....|.-..+
T Consensus 207 -~dGC-----------~ltrd-~~e~Leda~f~~~~~kr~~~~ttw~~ 241 (252)
T KOG4300|consen 207 -SDGC-----------VLTRD-TGELLEDAEFSIDSCKRFNFGTTWVI 241 (252)
T ss_pred -ccce-----------EEehh-HHHHhhhcccccchhhcccCCceEEE
Confidence 0111 11333 44689999999999988877755443
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.4e-18 Score=141.20 Aligned_cols=160 Identities=19% Similarity=0.249 Sum_probs=123.8
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
-++++|||+|||.|.++..+++. ++.|+++|+++.+++.|+.+..+.++ ++.+....+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-------------------Ga~VtgiD~se~~I~~Ak~ha~e~gv---~i~y~~~~~ 115 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-------------------GASVTGIDASEKPIEVAKLHALESGV---NIDYRQATV 115 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-------------------CCeeEEecCChHHHHHHHHhhhhccc---cccchhhhH
Confidence 46889999999999999999987 48999999999999999999888765 467888888
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHH-HHhhccccccccccccCCCc
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELY-DYYSFSVIPAIGELVAGDRG 240 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 240 (288)
+++....++||+|+|..+++|++++..+++.|.+++||||.+++..........+..+. ..+. ..++.....
T Consensus 116 edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~v-------l~~vP~gTH 188 (243)
T COG2227 116 EDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYV-------LRIVPKGTH 188 (243)
T ss_pred HHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHH-------HHhcCCcch
Confidence 87766557999999999999999999999999999999999998766654333332222 2221 122222211
Q ss_pred chhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC
Q 036563 241 SYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277 (288)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 277 (288)
. ...+..++++..++..+|+.+....-+..
T Consensus 189 ~-------~~k~irp~El~~~~~~~~~~~~~~~g~~y 218 (243)
T COG2227 189 D-------YRKFIKPAELIRWLLGANLKIIDRKGLTY 218 (243)
T ss_pred h-------HHHhcCHHHHHHhcccCCceEEeecceEe
Confidence 1 23466789999999999999888765544
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-17 Score=141.94 Aligned_cols=161 Identities=22% Similarity=0.320 Sum_probs=131.9
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+.+.+.+...||++|||||||.|.++..++++.+ .+|+|+++|+++...+++++...++.
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~------------------v~V~GvTlS~~Q~~~~~~r~~~~gl~- 121 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG------------------VTVVGVTLSEEQLAYAEKRIAARGLE- 121 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC------------------CEEEEeeCCHHHHHHHHHHHHHcCCC-
Confidence 36778899999999999999999999999999974 89999999999999999999999987
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCChHHH--HHHHHHhhccc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIPVF--KELYDYYSFSV 227 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~--~~~~~~~~~~~ 227 (288)
.++++...|..++. +.||-|++...++|+.. ...+++.+.+.|+|||.+++...+.++.... ..+...+
T Consensus 122 ~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~y---- 194 (283)
T COG2230 122 DNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKY---- 194 (283)
T ss_pred cccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHh----
Confidence 78999999987764 34999999999999964 8899999999999999999988877754431 1111111
Q ss_pred cccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 228 IPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
+..+. .+++..++.+..+++||.+...+++.
T Consensus 195 -------iFPgG-----------~lPs~~~i~~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 195 -------IFPGG-----------ELPSISEILELASEAGFVVLDVESLR 225 (283)
T ss_pred -------CCCCC-----------cCCCHHHHHHHHHhcCcEEehHhhhc
Confidence 11111 15678889899999999998877654
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=137.53 Aligned_cols=177 Identities=16% Similarity=0.138 Sum_probs=120.3
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..+.+.+...+...++.+|||+|||+|.++..+++..... .+..+++++|+++.|++.++++...
T Consensus 46 ~~~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~-------------g~~~~v~gvD~s~~~l~~a~~~~~~-- 110 (232)
T PRK06202 46 GLYRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRD-------------GLRLEVTAIDPDPRAVAFARANPRR-- 110 (232)
T ss_pred HHHHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhC-------------CCCcEEEEEcCCHHHHHHHHhcccc--
Confidence 3344444344444566799999999999998887654200 0246899999999999999887543
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcc
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFS 226 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~ 226 (288)
.++.+...+...++.++++||+|+++.++||+++. ..+++++.++++ |.+++.++..+...........
T Consensus 111 ---~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~---- 181 (232)
T PRK06202 111 ---PGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGT---- 181 (232)
T ss_pred ---CCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHH----
Confidence 34666666666666667789999999999999874 579999999998 6666666666532221111111
Q ss_pred ccccc-cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC
Q 036563 227 VIPAI-GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277 (288)
Q Consensus 227 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 277 (288)
.+.. +.+...+ ...++.++++.+++.+++++ ||++.....+..
T Consensus 182 -~~~~~~~~~~~d------~~~s~~~~~~~~el~~ll~~-Gf~~~~~~~~~~ 225 (232)
T PRK06202 182 -RLLSRSSFVHTD------GLLSVRRSYTPAELAALAPQ-GWRVERQWPFRY 225 (232)
T ss_pred -HHhccCceeecc------chHHHHhhcCHHHHHHHhhC-CCeEEeccceee
Confidence 1111 1111111 13566778899999999999 999888776644
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.9e-17 Score=138.12 Aligned_cols=142 Identities=23% Similarity=0.363 Sum_probs=110.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++.. +++.++.+|+.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-----------------~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~ 90 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-----------------PQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAE 90 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-----------------CCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchh
Confidence 35789999999999999998886 45789999999999998887653 36889999999
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcch
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSY 242 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (288)
..++++++||+|++..++++..++..++.++.++|+|||.+++.++..............
T Consensus 91 ~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~-------------------- 150 (240)
T TIGR02072 91 KLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQ-------------------- 150 (240)
T ss_pred hCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHH--------------------
Confidence 888778899999999999999999999999999999999999876655432222221110
Q ss_pred hhhHHHHhcCCChHHHHHHHHHcCCcEEEEE
Q 036563 243 QYLVESVRRFPPQEKFAAMISDAGFQKVEYE 273 (288)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 273 (288)
....+.+.+++.++++++ |..+.+.
T Consensus 151 -----~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 151 -----HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred -----hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 011245677788888877 7766554
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=141.44 Aligned_cols=148 Identities=17% Similarity=0.190 Sum_probs=118.4
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+|||||||+|..+..+++.. +..+++++|+|+++++.++++....++. .++++...|+...+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-----------------~~~~v~gid~s~~~~~~a~~~~~~~gl~-~~i~~~~~d~~~~~ 63 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-----------------PHLQLHGYTISPEQAEVGRERIRALGLQ-GRIRIFYRDSAKDP 63 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEecccccCC
Confidence 79999999999999998876 3578999999999999999998887776 68899999986655
Q ss_pred CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhh
Q 036563 166 FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYL 245 (288)
Q Consensus 166 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (288)
++ ++||+|++..+++|+.+...+++++.++|+|||.+++.+........ ... ....
T Consensus 64 ~~-~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------------~~~---~~~~----- 119 (224)
T smart00828 64 FP-DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSA---------------IEH---EETT----- 119 (224)
T ss_pred CC-CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCcc---------------ccc---cccc-----
Confidence 54 48999999999999999999999999999999999987754321000 000 0000
Q ss_pred HHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCe
Q 036563 246 VESVRRFPPQEKFAAMISDAGFQKVEYENLVGGV 279 (288)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~ 279 (288)
..+++..+|.++++++||++++..++...+
T Consensus 120 ----~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~ 149 (224)
T smart00828 120 ----SYLVTREEWAELLARNNLRVVEGVDASLEI 149 (224)
T ss_pred ----cccCCHHHHHHHHHHCCCeEEEeEECcHhH
Confidence 114588999999999999999988876543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-17 Score=120.71 Aligned_cols=95 Identities=34% Similarity=0.465 Sum_probs=83.7
Q ss_pred EEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCC
Q 036563 88 LDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFE 167 (288)
Q Consensus 88 LDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~ 167 (288)
||+|||+|..+..+++.. ..+++++|+++++++.++++.... ++.+...|+..++++
T Consensus 1 LdiG~G~G~~~~~l~~~~------------------~~~v~~~D~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~~ 57 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG------------------GASVTGIDISEEMLEQARKRLKNE-----GVSFRQGDAEDLPFP 57 (95)
T ss_dssp EEET-TTSHHHHHHHHTT------------------TCEEEEEES-HHHHHHHHHHTTTS-----TEEEEESBTTSSSS-
T ss_pred CEecCcCCHHHHHHHhcc------------------CCEEEEEeCCHHHHHHHHhccccc-----CchheeehHHhCccc
Confidence 899999999999999982 489999999999999999987653 567999999999999
Q ss_pred CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 168 DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 168 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+++||+|++..++++++++.++++++.|+|||||++++
T Consensus 58 ~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 58 DNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 99999999999999999999999999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-16 Score=136.74 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=95.9
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+.++..+...++.+|||+|||+|.++..+++.+ +..+++++|+|+.|++.++++.
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-----------------~~~~v~gvD~s~~~i~~a~~~~------ 75 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-----------------PAARITGIDSSPAMLAEARSRL------ 75 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHhC------
Confidence 34566677777778899999999999999998886 4689999999999999998764
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+++.+..+|+..+. +..+||+|+++.+++++++...+++++.+.|+|||.+++.
T Consensus 76 -~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 76 -PDCQFVEADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred -CCCeEEECchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 46888999987664 3458999999999999999999999999999999999875
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=135.51 Aligned_cols=169 Identities=20% Similarity=0.262 Sum_probs=119.9
Q ss_pred HHHHHHHhhcC--CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 70 LWKDRLVSKLN--PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 70 ~~~~~~~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
.+++.+.+.+. ..++.+|||+|||+|.++..+++.. .+++++|++++|+..++++....
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~-------------------~~v~gvD~s~~~i~~a~~~~~~~ 100 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG-------------------AIVKAVDISEQMVQMARNRAQGR 100 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC-------------------CEEEEEECCHHHHHHHHHHHHhc
Confidence 45566666665 4567899999999999999987752 68999999999999999988766
Q ss_pred CCCCCceEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhc
Q 036563 148 GYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSF 225 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~ 225 (288)
+.. .++.+..+|+...+ ++||+|++..++++++ +...+++++.+++++++.+.+. . ......... ..
T Consensus 101 ~~~-~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~---~-~~~~~~~~~-~~-- 169 (219)
T TIGR02021 101 DVA-GNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA---P-KTAWLAFLK-MI-- 169 (219)
T ss_pred CCC-CceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC---C-CchHHHHHH-HH--
Confidence 543 47899999987765 6899999999988875 3567899999998877665542 1 122211111 10
Q ss_pred cccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCee
Q 036563 226 SVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVV 280 (288)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~ 280 (288)
...+....... ...+++.+++.++++++||+++.......|.+
T Consensus 170 ------~~~~~~~~~~~------~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~~ 212 (219)
T TIGR02021 170 ------GELFPGSSRAT------SAYLHPMTDLERALGELGWKIVREGLVSTGFY 212 (219)
T ss_pred ------HhhCcCccccc------ceEEecHHHHHHHHHHcCceeeeeecccccch
Confidence 00011100000 01245889999999999999999987777654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-17 Score=122.78 Aligned_cols=106 Identities=28% Similarity=0.443 Sum_probs=88.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc-
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA- 161 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~- 161 (288)
|+.+|||+|||+|.++..+++.. ++.+++++|+|+.+++.++++....+.. ++++++.+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-----------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~ 62 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-----------------PGARVVGVDISPEMLEIARERAAEEGLS-DRITFVQGDAE 62 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-----------------TTSEEEEEESSHHHHHHHHHHHHHTTTT-TTEEEEESCCH
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-----------------CCCEEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECccc
Confidence 57899999999999999999965 4699999999999999999999655555 7999999999
Q ss_pred ccCCCCCCCeeEEEecc-ccccc---cCHHHHHHHHHhhccCCcEEEEEe
Q 036563 162 EALCFEDSTMDGYTIAF-GIRNV---THIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~-~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
..... .+.||+|++.. .+++. ++...+++++.+.|+|||++++.+
T Consensus 63 ~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 63 FDPDF-LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGTTT-SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCccc-CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33333 34699999999 54433 346789999999999999999754
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.9e-17 Score=135.42 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=111.6
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+.+.+...++.+|||+|||+|..+..+++.. .+|+++|+|+.|++.+++.....++. +
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g-------------------~~V~gvD~S~~~i~~a~~~~~~~~~~--~ 79 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG-------------------FDVTAWDKNPMSIANLERIKAAENLD--N 79 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCC-------------------CEEEEEeCCHHHHHHHHHHHHHcCCC--c
Confidence 34555556667899999999999999998763 79999999999999999988777663 6
Q ss_pred eEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
+.+...|+...+++ ++||+|+++.++++++ +...+++++.++|+|||++++.+...++... .
T Consensus 80 v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~-------~-------- 143 (197)
T PRK11207 80 LHTAVVDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP-------C-------- 143 (197)
T ss_pred ceEEecChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC-------C--------
Confidence 88888998777654 5799999999998775 4678999999999999997665433221100 0
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
. .+. ...++.+++.+.++ ||+++....
T Consensus 144 ~---~~~-----------~~~~~~~el~~~~~--~~~~~~~~~ 170 (197)
T PRK11207 144 T---VGF-----------PFAFKEGELRRYYE--GWEMVKYNE 170 (197)
T ss_pred C---CCC-----------CCccCHHHHHHHhC--CCeEEEeeC
Confidence 0 000 01347888888887 899888743
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.6e-16 Score=127.92 Aligned_cols=120 Identities=24% Similarity=0.323 Sum_probs=97.3
Q ss_pred hhhhhHHHHHHHHhhcC----CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHH
Q 036563 64 SGGLHRLWKDRLVSKLN----PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNV 139 (288)
Q Consensus 64 ~~~~~~~~~~~~~~~l~----~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~ 139 (288)
....++.|.+.+...+. .+++.+|||+|||+|..+..++... +..+++++|+++.|++.
T Consensus 22 ~~~~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~-----------------~~~~V~giD~s~~~l~~ 84 (187)
T PRK00107 22 IRDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIAR-----------------PELKVTLVDSLGKKIAF 84 (187)
T ss_pred cCCHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHC-----------------CCCeEEEEeCcHHHHHH
Confidence 34445566655544331 2347899999999999999998865 46899999999999999
Q ss_pred HHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 140 GKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 140 a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
++++....+++ ++++..+|+.+++. .++||+|+++. ..++..+++.+.+.|+|||.+++..
T Consensus 85 A~~~~~~~~l~--~i~~~~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 85 LREVAAELGLK--NVTVVHGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred HHHHHHHcCCC--CEEEEeccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 99999888774 59999999988765 66899999864 3567889999999999999999764
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.6e-16 Score=137.11 Aligned_cols=162 Identities=20% Similarity=0.336 Sum_probs=121.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.+.+...++.+|||||||+|.++..+++.+ |..+++++|. +.+++.+++++...++. +
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-----------------p~~~~~~~D~-~~~~~~a~~~~~~~gl~-~ 199 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-----------------PELDSTILNL-PGAIDLVNENAAEKGVA-D 199 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-----------------CCCEEEEEec-HHHHHHHHHHHHhCCcc-c
Confidence 445566666777899999999999999999997 5689999997 78999999998888776 6
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEeccCC--ChHHHHHHHHHhhcccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLELSHV--DIPVFKELYDYYSFSVI 228 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~--~~~~~~~~~~~~~~~~~ 228 (288)
+++++.+|+.+.+++. +|+|++..++|++++. ..+++++++.|+|||++++.|.... ..+.+..+.....
T Consensus 200 rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~---- 273 (306)
T TIGR02716 200 RMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYIL---- 273 (306)
T ss_pred eEEEEecCccCCCCCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHH----
Confidence 8999999987655543 7999999999988653 5799999999999999999987443 2232222222111
Q ss_pred ccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEE
Q 036563 229 PAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEY 272 (288)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 272 (288)
.++... ....+.+.+++.++|+++||+.+++
T Consensus 274 -~~~~~~------------~~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 274 -GAGMPF------------SVLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred -Hccccc------------ccccCCCHHHHHHHHHHcCCCeeEe
Confidence 011000 0112335799999999999998865
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-15 Score=127.75 Aligned_cols=194 Identities=18% Similarity=0.208 Sum_probs=129.5
Q ss_pred HHHHhHhhHHHhhhhhhh--hhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCC
Q 036563 46 SNVFSSVAKNYDLMNDLM--SGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQE 123 (288)
Q Consensus 46 ~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (288)
.+.|+.++..|....... .........+.+...+...++.+|||+|||+|.++..+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~------------------ 70 (233)
T PRK05134 9 IAKFSALAARWWDPNGEFKPLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG------------------ 70 (233)
T ss_pred HHHHHHHHHHHhccCCCcHHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC------------------
Confidence 355777777665332211 011111222344555556678899999999999998887652
Q ss_pred CceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcE
Q 036563 124 ETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGR 202 (288)
Q Consensus 124 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~ 202 (288)
.+++++|+++.+++.++++....+. ++.+...|+...+ ...++||+|++..++++..++..+++.+.++|+|||.
T Consensus 71 -~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~ 146 (233)
T PRK05134 71 -ADVTGIDASEENIEVARLHALESGL---KIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGL 146 (233)
T ss_pred -CeEEEEcCCHHHHHHHHHHHHHcCC---ceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcE
Confidence 6899999999999999888765542 4677778776653 3446899999999999999999999999999999999
Q ss_pred EEEEeccCCChHHHHHH-HHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 203 FLCLELSHVDIPVFKEL-YDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 203 l~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
+++.............. ...+.....+ ... .....+++.+++.++++++||++++....
T Consensus 147 l~v~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~ 206 (233)
T PRK05134 147 VFFSTLNRNLKSYLLAIVGAEYVLRMLP-------KGT-------HDYKKFIKPSELAAWLRQAGLEVQDITGL 206 (233)
T ss_pred EEEEecCCChHHHHHHHhhHHHHhhhcC-------ccc-------CchhhcCCHHHHHHHHHHCCCeEeeeeeE
Confidence 99765543211111111 0111100000 000 11234678999999999999999987643
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=134.62 Aligned_cols=154 Identities=18% Similarity=0.252 Sum_probs=115.2
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC----ceEEEEc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK----SLLWVEG 159 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~----~v~~~~~ 159 (288)
+++|||+|||+|.++..+++.. +.|+|+|+++.|++.|+++....+..+. ++++...
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-------------------a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~ 150 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-------------------AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDT 150 (282)
T ss_pred CceEEEeccCccccchhhHhhC-------------------CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhc
Confidence 4789999999999999999984 8999999999999999999655544433 3566777
Q ss_pred ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHH-HHHhhccccccccccccCC
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKEL-YDYYSFSVIPAIGELVAGD 238 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 238 (288)
|++... +.||.|+|..+++|+.|+..++..+.++|+|+|.+++.+.......++..+ ...+...+.|. +.
T Consensus 151 ~~E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~------Gt 221 (282)
T KOG1270|consen 151 DVEGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPK------GT 221 (282)
T ss_pred chhhcc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCC------CC
Confidence 777653 359999999999999999999999999999999999887766533333221 11111111111 11
Q ss_pred CcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEE
Q 036563 239 RGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYE 273 (288)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 273 (288)
++ ...|.++.++..+++.+|+++..+.
T Consensus 222 ---h~-----~ekfi~p~e~~~~l~~~~~~v~~v~ 248 (282)
T KOG1270|consen 222 ---HT-----WEKFINPEELTSILNANGAQVNDVV 248 (282)
T ss_pred ---cC-----HHHcCCHHHHHHHHHhcCcchhhhh
Confidence 11 1347799999999999999876654
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=135.42 Aligned_cols=196 Identities=17% Similarity=0.227 Sum_probs=120.4
Q ss_pred HHhHHHHHHHhHh-----hHHHhhhhhhhhhhh-----hHHHHHHHHhhcCC---CCCCeEEEecCCccHHHHHHHHhhh
Q 036563 40 EKSQLVSNVFSSV-----AKNYDLMNDLMSGGL-----HRLWKDRLVSKLNP---FPGMKHLDVAGGTGDVAFRILDTVN 106 (288)
Q Consensus 40 ~~~~~~~~~~~~~-----~~~y~~~~~~~~~~~-----~~~~~~~~~~~l~~---~~~~~vLDiG~G~G~~~~~l~~~~~ 106 (288)
...+.++++|+.+ ...|+.......... ++.+.+.+...+.. .++.+|||+|||+|.++..+++.
T Consensus 88 ~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-- 165 (315)
T PLN02585 88 DDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-- 165 (315)
T ss_pred HHHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC--
Confidence 3456778888876 344544322221111 22333445555532 35679999999999999999876
Q ss_pred hhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC---CCCceEEEEcccccCCCCCCCeeEEEeccccccc
Q 036563 107 SIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY---PDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 183 (288)
+.+++++|+|+.|++.++++...... ...++.+...|+..+ +++||+|+|..+++|+
T Consensus 166 -----------------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~ 225 (315)
T PLN02585 166 -----------------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHY 225 (315)
T ss_pred -----------------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEec
Confidence 37999999999999999998765421 113578888887654 4689999999999888
Q ss_pred cCH--HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHH
Q 036563 184 THI--EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAM 261 (288)
Q Consensus 184 ~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (288)
++. ..+++.+.+ +.++|.++ . + .+.. +.......+ +..+.+..... ...+.+.++++++
T Consensus 226 p~~~~~~ll~~l~~-l~~g~liI-s-~-~p~~-~~~~~l~~~--------g~~~~g~~~~~------r~y~~s~eel~~l 286 (315)
T PLN02585 226 PQDKADGMIAHLAS-LAEKRLII-S-F-APKT-LYYDILKRI--------GELFPGPSKAT------RAYLHAEADVERA 286 (315)
T ss_pred CHHHHHHHHHHHHh-hcCCEEEE-E-e-CCcc-hHHHHHHHH--------HhhcCCCCcCc------eeeeCCHHHHHHH
Confidence 653 346666665 45555544 2 2 2221 111221111 11111111000 0114489999999
Q ss_pred HHHcCCcEEEEEEee
Q 036563 262 ISDAGFQKVEYENLV 276 (288)
Q Consensus 262 l~~aGf~~v~~~~~~ 276 (288)
|+++||+++..+-..
T Consensus 287 L~~AGf~v~~~~~~~ 301 (315)
T PLN02585 287 LKKAGWKVARREMTA 301 (315)
T ss_pred HHHCCCEEEEEEEee
Confidence 999999987665443
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-16 Score=130.12 Aligned_cols=146 Identities=12% Similarity=0.061 Sum_probs=107.6
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+.+.+...++.+|||+|||+|..+..+++. +.+|+++|+|+.|++.++++....++ +
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-------------------g~~V~~iD~s~~~l~~a~~~~~~~~~---~ 78 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-------------------GYDVRAWDHNPASIASVLDMKARENL---P 78 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-------------------CCeEEEEECCHHHHHHHHHHHHHhCC---C
Confidence 3445555555679999999999999999875 37999999999999999888776654 3
Q ss_pred eEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
+.+...|+...+++ ++||+|+++.++++++ +...+++++.++|+|||++++++....... . .
T Consensus 79 v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~---------~------~ 142 (195)
T TIGR00477 79 LRTDAYDINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADY---------P------C 142 (195)
T ss_pred ceeEeccchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCC---------C------C
Confidence 67777777655544 5799999999998874 457899999999999999776654221110 0 0
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEE
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYE 273 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 273 (288)
+ .+. ...++++++.++|+ +|+++.+.
T Consensus 143 ~-----~~~---------~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 143 H-----MPF---------SFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred C-----CCc---------CccCCHHHHHHHhC--CCeEEEee
Confidence 0 000 11347899998886 58888876
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=124.74 Aligned_cols=164 Identities=19% Similarity=0.302 Sum_probs=126.3
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+.+.++ |+.+|||+|||.|.+...+.+.. +...+|+|++++.+..+.++ .+
T Consensus 7 I~~~I~--pgsrVLDLGCGdG~LL~~L~~~k------------------~v~g~GvEid~~~v~~cv~r---------Gv 57 (193)
T PF07021_consen 7 IAEWIE--PGSRVLDLGCGDGELLAYLKDEK------------------QVDGYGVEIDPDNVAACVAR---------GV 57 (193)
T ss_pred HHHHcC--CCCEEEecCCCchHHHHHHHHhc------------------CCeEEEEecCHHHHHHHHHc---------CC
Confidence 444544 47899999999999999998874 58999999999988877654 57
Q ss_pred EEEEcccccC--CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 155 LWVEGDAEAL--CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 155 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
.++++|++.. .+++++||.|+++.+++++.++..+|+++.|+ |...++. -|+...++....... -|
T Consensus 58 ~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVs---FPNFg~W~~R~~l~~------~G 125 (193)
T PF07021_consen 58 SVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVS---FPNFGHWRNRLQLLL------RG 125 (193)
T ss_pred CEEECCHHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEE---ecChHHHHHHHHHHh------cC
Confidence 7899998764 48899999999999999999999999998776 4455532 233333333333332 35
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCe
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGV 279 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~ 279 (288)
.++..+.-.|.|+....-+++|..++++++++.|+++++...+..+.
T Consensus 126 rmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 126 RMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 55555666777777777889999999999999999999987766543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=120.27 Aligned_cols=100 Identities=22% Similarity=0.296 Sum_probs=83.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|..+..++... +..+++++|+++.|++.++++....++. +++++.+|+.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-----------------~~~~V~~iD~s~~~~~~a~~~~~~~~~~--~i~~i~~d~~ 102 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-----------------PELKLTLLESNHKKVAFLREVKAELGLN--NVEIVNGRAE 102 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-----------------CCCeEEEEeCcHHHHHHHHHHHHHhCCC--CeEEEecchh
Confidence 47899999999999999887664 4578999999999999999888877663 6999999998
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++. ..++||+|++.. + .+....++.+.++|+|||.+++.
T Consensus 103 ~~~-~~~~fD~I~s~~-~---~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 103 DFQ-HEEQFDVITSRA-L---ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hcc-ccCCccEEEehh-h---hCHHHHHHHHHHhcCCCCEEEEE
Confidence 864 356899999865 3 45677888899999999999864
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-14 Score=122.89 Aligned_cols=159 Identities=17% Similarity=0.243 Sum_probs=115.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....+. .++.+...|+.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~-------------------~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~ 103 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG-------------------ANVTGIDASEENIEVAKLHAKKDPL--LKIEYRCTSVE 103 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC-------------------CeEEEEeCCHHHHHHHHHHHHHcCC--CceEEEeCCHH
Confidence 46799999999999998887653 5799999999999999988776543 25888888887
Q ss_pred cCCCC-CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHH-hhccccccccccccCCCc
Q 036563 163 ALCFE-DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDY-YSFSVIPAIGELVAGDRG 240 (288)
Q Consensus 163 ~~~~~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 240 (288)
+.+.. .++||+|++..++++..++..+++++.+.|+|||.+++................. +.....+ ....
T Consensus 104 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~- 176 (224)
T TIGR01983 104 DLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVP------KGTH- 176 (224)
T ss_pred HhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCC------CCcC-
Confidence 66533 3689999999999999999999999999999999998766543322222111110 1100000 0000
Q ss_pred chhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 241 SYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
...++.+..++.++++++||+++++....
T Consensus 177 -------~~~~~~~~~~l~~~l~~~G~~i~~~~~~~ 205 (224)
T TIGR01983 177 -------DWEKFIKPSELTSWLESAGLRVKDVKGLV 205 (224)
T ss_pred -------ChhhcCCHHHHHHHHHHcCCeeeeeeeEE
Confidence 01235688999999999999999887543
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-15 Score=129.51 Aligned_cols=165 Identities=19% Similarity=0.166 Sum_probs=115.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+...++.-.+.+|||||||.|.++..++... ...|+|+|+++...-+.+....-.+.. .
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~G------------------A~~ViGiDP~~lf~~QF~~i~~~lg~~-~ 165 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG------------------AKSVIGIDPSPLFYLQFEAIKHFLGQD-P 165 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcC------------------CCEEEEECCChHHHHHHHHHHHHhCCC-c
Confidence 456777766778999999999999999998874 368999999987765543222222211 2
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
.+......++.++. .+.||+|+|..+|+|..++...|.+++..|+|||.+++-....+......
T Consensus 166 ~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~--------------- 229 (315)
T PF08003_consen 166 PVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTV--------------- 229 (315)
T ss_pred cEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceE---------------
Confidence 34444456677776 67899999999999999999999999999999999997544333211100
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
++. .+.|.. ...+...++...+..+|+++||+.+++....
T Consensus 230 -L~P--~~rYa~-m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 230 -LVP--EDRYAK-MRNVWFIPSVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred -Ecc--CCcccC-CCceEEeCCHHHHHHHHHHcCCceEEEecCc
Confidence 000 011111 0112236799999999999999999987653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-14 Score=123.08 Aligned_cols=155 Identities=19% Similarity=0.303 Sum_probs=105.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..+++.. ..++++|++++|++.++++....+.. .++.+..+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~-------------------~~v~~~D~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~ 121 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG-------------------AKVVASDISPQMVEEARERAPEAGLA-GNITFEVGDL 121 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC-------------------CEEEEEECCHHHHHHHHHHHHhcCCc-cCcEEEEcCc
Confidence 567799999999999999888763 57999999999999999988776554 4788998884
Q ss_pred ccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCC
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDR 239 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (288)
.. .+++||+|++..+++|+++ ...+++++.+.+++++.+.+ . +..+.... .... ...+....
T Consensus 122 ~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~---~-~~~~~~~~-~~~l--------~~~~~~~~ 185 (230)
T PRK07580 122 ES---LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF---A-PYTPLLAL-LHWI--------GGLFPGPS 185 (230)
T ss_pred hh---ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE---C-CccHHHHH-HHHh--------ccccCCcc
Confidence 32 3567999999999988763 45678888887654443332 1 11111111 1111 11110000
Q ss_pred cchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCC
Q 036563 240 GSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGG 278 (288)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 278 (288)
.. ....+.+..++.++++++||++++.+.+..+
T Consensus 186 ~~------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 218 (230)
T PRK07580 186 RT------TRIYPHREKGIRRALAAAGFKVVRTERISSG 218 (230)
T ss_pred CC------CCccccCHHHHHHHHHHCCCceEeeeeccch
Confidence 00 0012457899999999999999999887655
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-14 Score=117.73 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=108.1
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+..+..+...+...++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++....+
T Consensus 17 ~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-----------------~~~~v~~vD~s~~~~~~a~~n~~~~~ 79 (187)
T PRK08287 17 EEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-----------------PSLQVTAIERNPDALRLIKENRQRFG 79 (187)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHHhC
Confidence 3444555667777778899999999999999998875 46899999999999999999887766
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccc
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVI 228 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 228 (288)
+ .++++..+|... .+ .++||+|++..... ....+++.+.+.|+|||++++.....
T Consensus 80 ~--~~i~~~~~d~~~-~~-~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~------------------ 134 (187)
T PRK08287 80 C--GNIDIIPGEAPI-EL-PGKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFILL------------------ 134 (187)
T ss_pred C--CCeEEEecCchh-hc-CcCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEecH------------------
Confidence 5 368888888742 23 35799999876543 35678899999999999998643211
Q ss_pred ccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 229 PAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
.+.+++.+++++.||..+++...
T Consensus 135 ------------------------~~~~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 135 ------------------------ENLHSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred ------------------------hhHHHHHHHHHHCCCCcceEEEE
Confidence 13467778999999987776443
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-14 Score=116.48 Aligned_cols=142 Identities=20% Similarity=0.158 Sum_probs=108.1
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
..+...++.+|||+|||+|.++..++... .+++++|+++.+++.++++....+. ++++
T Consensus 13 ~~l~~~~~~~vLdlG~G~G~~~~~l~~~~-------------------~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~ 70 (179)
T TIGR00537 13 ANLRELKPDDVLEIGAGTGLVAIRLKGKG-------------------KCILTTDINPFAVKELRENAKLNNV---GLDV 70 (179)
T ss_pred HHHHhcCCCeEEEeCCChhHHHHHHHhcC-------------------CEEEEEECCHHHHHHHHHHHHHcCC---ceEE
Confidence 34444456789999999999999888764 4899999999999999998876653 5788
Q ss_pred EEcccccCCCCCCCeeEEEeccccccccC---------------------HHHHHHHHHhhccCCcEEEEEeccCCChHH
Q 036563 157 VEGDAEALCFEDSTMDGYTIAFGIRNVTH---------------------IEKALAEAYRVLKRGGRFLCLELSHVDIPV 215 (288)
Q Consensus 157 ~~~d~~~~~~~~~~~D~v~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~ 215 (288)
..+|+.+.. .++||+|+++..+++.++ ...+++++.++|+|||.+++......
T Consensus 71 ~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---- 144 (179)
T TIGR00537 71 VMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---- 144 (179)
T ss_pred EEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----
Confidence 888876543 348999999988765542 24679999999999999987643221
Q ss_pred HHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEE
Q 036563 216 FKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHS 284 (288)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~ 284 (288)
...++.+.|++.||+......-......+++
T Consensus 145 --------------------------------------~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~ 175 (179)
T TIGR00537 145 --------------------------------------GEPDTFDKLDERGFRYEIVAERGLFFEELFA 175 (179)
T ss_pred --------------------------------------ChHHHHHHHHhCCCeEEEEEEeecCceEEEE
Confidence 3567788999999998887765544444443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-14 Score=126.33 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=89.2
Q ss_pred hhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 67 LHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 67 ~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
+.+.+.+.+.+.++ ++.+|||+|||+|..+..+++... ...+|+++|+|++|++.+++++..
T Consensus 49 il~~~~~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~----------------~~~~~~~iDiS~~mL~~a~~~l~~ 110 (301)
T TIGR03438 49 ILERHADEIAAATG--AGCELVELGSGSSRKTRLLLDALR----------------QPARYVPIDISADALKESAAALAA 110 (301)
T ss_pred HHHHHHHHHHHhhC--CCCeEEecCCCcchhHHHHHHhhc----------------cCCeEEEEECCHHHHHHHHHHHHh
Confidence 34455566666664 457899999999999999998862 147899999999999999988765
Q ss_pred cCCCCCceEEEEcccccC-CCCCC----CeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEe
Q 036563 147 RGYPDKSLLWVEGDAEAL-CFEDS----TMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 147 ~~~~~~~v~~~~~d~~~~-~~~~~----~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.. +.-++.++++|+.+. +++.. ...++++..++++++ +...+|+++++.|+|||.+++.-
T Consensus 111 ~~-p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 111 DY-PQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred hC-CCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 32 213577789998763 33322 234555556777775 35678999999999999998643
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=138.76 Aligned_cols=113 Identities=32% Similarity=0.445 Sum_probs=93.5
Q ss_pred cCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 79 LNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
....++.+|||+|||+|..+..+++.. ++.+++++|+|+.|++.++++....+ .++.++.
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~-----------------P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~ 473 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEET-----------------EDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIK 473 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEE
Confidence 334457899999999999998888876 56899999999999999988765443 3678888
Q ss_pred cccccCC--CCCCCeeEEEeccccccc-------------cCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 159 GDAEALC--FEDSTMDGYTIAFGIRNV-------------THIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 159 ~d~~~~~--~~~~~~D~v~~~~~l~~~-------------~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
+|+.+++ +++++||+|+++.++|++ .+..++|+++.++|||||.+++.+...+
T Consensus 474 gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 474 GDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred cchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 9988776 677899999999988864 2457899999999999999999876443
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-14 Score=119.06 Aligned_cols=160 Identities=16% Similarity=0.306 Sum_probs=106.6
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+.+.++ ++.+|||+|||+|.++..+++.. ...++++|+++++++.+++ .++
T Consensus 7 i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~------------------~~~~~giD~s~~~i~~a~~---------~~~ 57 (194)
T TIGR02081 7 ILNLIP--PGSRVLDLGCGDGELLALLRDEK------------------QVRGYGIEIDQDGVLACVA---------RGV 57 (194)
T ss_pred HHHhcC--CCCEEEEeCCCCCHHHHHHHhcc------------------CCcEEEEeCCHHHHHHHHH---------cCC
Confidence 444443 46799999999999998887653 3678999999999988754 246
Q ss_pred EEEEccccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 155 LWVEGDAEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 155 ~~~~~d~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
.++.+|+.. + ++++++||+|+++.+++|+.++..+|+++.+.+++ +++. + |....+......+.....+...
T Consensus 58 ~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~---~ii~-~--p~~~~~~~~~~~~~~~~~~~~~ 131 (194)
T TIGR02081 58 NVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRH---AIVS-F--PNFGYWRVRWSILTKGRMPVTG 131 (194)
T ss_pred eEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe---EEEE-c--CChhHHHHHHHHHhCCccccCC
Confidence 778888765 3 35667899999999999999999999998887653 3322 2 2222222211111111111111
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
...+.+......++++.+++.++++++||++++...+
T Consensus 132 ------~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 132 ------ELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred ------CCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 0111222222335779999999999999999987765
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-14 Score=114.59 Aligned_cols=146 Identities=18% Similarity=0.294 Sum_probs=107.1
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+...++..+..++||+|||.|.++..++... .+++++|+++.+++.+++++... +++
T Consensus 35 l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC-------------------d~LlavDis~~Al~~Ar~Rl~~~----~~V 91 (201)
T PF05401_consen 35 LLAALPRRRYRRALEVGCSIGVLTERLAPRC-------------------DRLLAVDISPRALARARERLAGL----PHV 91 (201)
T ss_dssp HHHHHTTSSEEEEEEE--TTSHHHHHHGGGE-------------------EEEEEEES-HHHHHHHHHHTTT-----SSE
T ss_pred HHHhcCccccceeEecCCCccHHHHHHHHhh-------------------CceEEEeCCHHHHHHHHHhcCCC----CCe
Confidence 4446777777899999999999999999986 68999999999999999998765 689
Q ss_pred EEEEcccccCCCCCCCeeEEEeccccccccC---HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 155 LWVEGDAEALCFEDSTMDGYTIAFGIRNVTH---IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 155 ~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
++.+.|+... .|.++||+|+++.+++++.+ ...++..+...|+|||.+++..... .....|
T Consensus 92 ~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-------~~c~~w-------- 155 (201)
T PF05401_consen 92 EWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD-------ANCRRW-------- 155 (201)
T ss_dssp EEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-------HHHHHT--------
T ss_pred EEEECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-------Cccccc--------
Confidence 9999998765 46779999999999999975 4568999999999999999865421 111111
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCC
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGG 278 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 278 (288)
| +.+..+.+.++|++. |..|+.....++
T Consensus 156 g------------------h~~ga~tv~~~~~~~-~~~~~~~~~~~~ 183 (201)
T PF05401_consen 156 G------------------HAAGAETVLEMLQEH-LTEVERVECRGG 183 (201)
T ss_dssp T-------------------S--HHHHHHHHHHH-SEEEEEEEEE-S
T ss_pred C------------------cccchHHHHHHHHHH-hhheeEEEEcCC
Confidence 1 233678899999888 888887777654
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.3e-15 Score=138.40 Aligned_cols=153 Identities=13% Similarity=0.205 Sum_probs=113.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.+.+...++.+|||+|||+|.++..+++.. .+++++|+++.|++.+++..... +
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-------------------~~v~giD~s~~~l~~a~~~~~~~----~ 83 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-------------------GQVIALDFIESVIKKNESINGHY----K 83 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-------------------CEEEEEeCCHHHHHHHHHHhccC----C
Confidence 456667766667799999999999999998874 68999999999998876533211 5
Q ss_pred ceEEEEccccc--CCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccc
Q 036563 153 SLLWVEGDAEA--LCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVI 228 (288)
Q Consensus 153 ~v~~~~~d~~~--~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 228 (288)
++.++.+|+.. +++++++||+|++..+++++++ ...+++++.++|+|||.+++.+...........
T Consensus 84 ~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~---------- 153 (475)
T PLN02336 84 NVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR---------- 153 (475)
T ss_pred ceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc----------
Confidence 78999999863 4667789999999999999976 568999999999999999987654321100000
Q ss_pred ccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 229 PAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
..++. ++.....|..++.++||.......+
T Consensus 154 -------~~~~~----------~~~~~~~~~~~f~~~~~~~~~~~~~ 183 (475)
T PLN02336 154 -------KNNPT----------HYREPRFYTKVFKECHTRDEDGNSF 183 (475)
T ss_pred -------cCCCC----------eecChHHHHHHHHHheeccCCCCEE
Confidence 00111 1225678899999999987655433
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.7e-15 Score=120.46 Aligned_cols=111 Identities=15% Similarity=0.131 Sum_probs=99.5
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..++..++..+..+|.|+|||+|..+..++++. |.+.++|+|.|++|++.|+++. +
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-----------------P~A~i~GiDsS~~Mla~Aa~rl-------p 75 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRW-----------------PDAVITGIDSSPAMLAKAAQRL-------P 75 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhC-----------------CCCeEeeccCCHHHHHHHHHhC-------C
Confidence 457778888888899999999999999999998 6899999999999999998876 6
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+++|..+|+.... +....|+++++.++++++|-...|..+...|.|||++.+.-.
T Consensus 76 ~~~f~~aDl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 76 DATFEEADLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred CCceecccHhhcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECC
Confidence 8999999998875 445799999999999999999999999999999999997533
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-16 Score=115.70 Aligned_cols=97 Identities=28% Similarity=0.397 Sum_probs=65.8
Q ss_pred EEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC--
Q 036563 88 LDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC-- 165 (288)
Q Consensus 88 LDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~-- 165 (288)
||+|||+|.++..+++.. +..+++++|+|+.|++.++++....... +......+..+..
T Consensus 1 LdiGcG~G~~~~~l~~~~-----------------~~~~~~~~D~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 61 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-----------------PDARYTGVDISPSMLERARERLAELGND--NFERLRFDVLDLFDY 61 (99)
T ss_dssp -EESTTTS-TTTTHHHHC------------------EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---C
T ss_pred CEeCccChHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHhhhcCCc--ceeEEEeecCChhhc
Confidence 799999999999999996 4689999999999998888888776432 3333333333221
Q ss_pred CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEE
Q 036563 166 FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRF 203 (288)
Q Consensus 166 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 203 (288)
...++||+|++..++||++++..++++++++|+|||.|
T Consensus 62 ~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 62 DPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp CC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred ccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 12258999999999999999999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=129.15 Aligned_cols=102 Identities=16% Similarity=0.076 Sum_probs=86.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....++ ++++...|+.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-------------------g~~V~avD~s~~ai~~~~~~~~~~~l---~v~~~~~D~~ 177 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-------------------GFDVTAVDINQQSLENLQEIAEKENL---NIRTGLYDIN 177 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-------------------CCEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEechh
Confidence 4569999999999999998875 37999999999999999988877654 5788888887
Q ss_pred cCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEe
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
...+ +++||+|++..++++++ +...+++++.+.|+|||+++++.
T Consensus 178 ~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 178 SASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 6554 56899999999998875 56789999999999999977654
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-15 Score=123.24 Aligned_cols=191 Identities=23% Similarity=0.250 Sum_probs=135.6
Q ss_pred ccccccchhHHhHHHHHHHhHhhHHHhhh-hhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhh
Q 036563 31 FGFKEVPAEEKSQLVSNVFSSVAKNYDLM-NDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIK 109 (288)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~ 109 (288)
.|-.+++....+..+...|+..+..||.. ............ .+++......+-.++||+|||||..+..+....
T Consensus 73 lg~~e~p~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l-~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a---- 147 (287)
T COG4976 73 LGRGETPEKPPSAYVETLFDQYAERFDHILVDKLGYSVPELL-AEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA---- 147 (287)
T ss_pred hcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCccHHHH-HHHHHhccCCccceeeecccCcCcccHhHHHHH----
Confidence 44456666677788999999999999853 222222233333 344455555556799999999999999998886
Q ss_pred hhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC--CCCCCCeeEEEeccccccccCHH
Q 036563 110 RRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL--CFEDSTMDGYTIAFGIRNVTHIE 187 (288)
Q Consensus 110 ~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~ 187 (288)
.+++|+|+|.+|++.+.++-.- -...+.++..+ ...++.||+|.+..++.++-+.+
T Consensus 148 ---------------~~ltGvDiS~nMl~kA~eKg~Y-------D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le 205 (287)
T COG4976 148 ---------------DRLTGVDISENMLAKAHEKGLY-------DTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALE 205 (287)
T ss_pred ---------------hhccCCchhHHHHHHHHhccch-------HHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchh
Confidence 7899999999999988775211 12233443322 14567899999999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCC
Q 036563 188 KALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGF 267 (288)
Q Consensus 188 ~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 267 (288)
.++.-...+|+|||.|.+..-+.+... .+. +..+.+.-++...++.+++..||
T Consensus 206 ~~~~~aa~~L~~gGlfaFSvE~l~~~~------------------~f~---------l~ps~RyAH~~~YVr~~l~~~Gl 258 (287)
T COG4976 206 GLFAGAAGLLAPGGLFAFSVETLPDDG------------------GFV---------LGPSQRYAHSESYVRALLAASGL 258 (287)
T ss_pred hHHHHHHHhcCCCceEEEEecccCCCC------------------Cee---------cchhhhhccchHHHHHHHHhcCc
Confidence 999999999999999997544443221 000 00111223578899999999999
Q ss_pred cEEEEEEe
Q 036563 268 QKVEYENL 275 (288)
Q Consensus 268 ~~v~~~~~ 275 (288)
++++++..
T Consensus 259 ~~i~~~~t 266 (287)
T COG4976 259 EVIAIEDT 266 (287)
T ss_pred eEEEeecc
Confidence 99998765
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-14 Score=118.91 Aligned_cols=104 Identities=24% Similarity=0.245 Sum_probs=80.4
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.++..++.+|||+|||+|.++..+++.. +..+|+++|+++.|++.+.+..... .++.++
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v-----------------~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i 125 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIV-----------------EEGVVYAVEFAPRPMRELLEVAEER----KNIIPI 125 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhc-----------------CCCeEEEEECCHHHHHHHHHHhhhc----CCcEEE
Confidence 4777888999999999999999998876 2468999999999999877665543 478899
Q ss_pred EcccccC----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 158 EGDAEAL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 158 ~~d~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
.+|+... ++ .++||+|++.... ......+++++.++|||||.+++
T Consensus 126 ~~D~~~~~~~~~l-~~~~D~i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 126 LADARKPERYAHV-VEKVDVIYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred ECCCCCcchhhhc-cccCCEEEECCCC--hhHHHHHHHHHHHhcCCCcEEEE
Confidence 9998642 22 2469999854321 11123468999999999999998
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-13 Score=114.45 Aligned_cols=113 Identities=23% Similarity=0.404 Sum_probs=91.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
...+..+...++.+|||+|||+|.++..++...+ +..+++++|+++.+++.++++....++. .
T Consensus 30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~----------------~~~~v~avD~~~~~~~~a~~n~~~~g~~-~ 92 (198)
T PRK00377 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVG----------------ETGKVYAVDKDEKAINLTRRNAEKFGVL-N 92 (198)
T ss_pred HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhC----------------CCCEEEEEECCHHHHHHHHHHHHHhCCC-C
Confidence 3345677778889999999999999999887753 3578999999999999999998877644 5
Q ss_pred ceEEEEcccccC-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 153 SLLWVEGDAEAL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 153 ~v~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
++.++.+|+.+. +...+.||.|++... ..++..+++.+.+.|+|||++++
T Consensus 93 ~v~~~~~d~~~~l~~~~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 93 NIVLIKGEAPEILFTINEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CeEEEEechhhhHhhcCCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEE
Confidence 788998988653 223457999998542 34678899999999999999985
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.6e-15 Score=110.36 Aligned_cols=98 Identities=31% Similarity=0.475 Sum_probs=79.4
Q ss_pred EEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCC
Q 036563 87 HLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCF 166 (288)
Q Consensus 87 vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~ 166 (288)
|||+|||+|..+..+++.+. ++ +..+++++|+|++|++.++++....+ .++++++.|+.++++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~-~~-------------~~~~~~gvD~s~~~l~~~~~~~~~~~---~~~~~~~~D~~~l~~ 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFD-AG-------------PSSRVIGVDISPEMLELAKKRFSEDG---PKVRFVQADARDLPF 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-------------------SEEEEEES-HHHHHHHHHHSHHTT---TTSEEEESCTTCHHH
T ss_pred CEEeecCCcHHHHHHHHHhh-hc-------------ccceEEEEECCHHHHHHHHHhchhcC---CceEEEECCHhHCcc
Confidence 79999999999999998861 00 24799999999999999999987755 379999999999887
Q ss_pred CCCCeeEEEecc-cccccc--CHHHHHHHHHhhccCCc
Q 036563 167 EDSTMDGYTIAF-GIRNVT--HIEKALAEAYRVLKRGG 201 (288)
Q Consensus 167 ~~~~~D~v~~~~-~l~~~~--~~~~~l~~~~~~L~pgG 201 (288)
.+++||+|++.. +++|++ +...+++++.++|+|||
T Consensus 64 ~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 64 SDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp HSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 788999999954 488876 35789999999999998
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=126.97 Aligned_cols=113 Identities=20% Similarity=0.221 Sum_probs=93.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.+.+...++.+|||||||+|.++..+++.. +.+++++|+|+++++.++++... .
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~------------------g~~V~giDlS~~~l~~A~~~~~~-----l 213 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY------------------GVSVVGVTISAEQQKLAQERCAG-----L 213 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC------------------CCEEEEEeCCHHHHHHHHHHhcc-----C
Confidence 456667777888999999999999999998875 37999999999999999988742 2
Q ss_pred ceEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
++++...|...+ +++||.|++..+++|+. +...+++++.++|+|||.+++.++..+
T Consensus 214 ~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 214 PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 477888887654 36799999999999885 357899999999999999998766544
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=4e-14 Score=119.08 Aligned_cols=106 Identities=23% Similarity=0.263 Sum_probs=87.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc-
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA- 161 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~- 161 (288)
++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++....++ +++.++++|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-----------------p~~~v~gVD~s~~~i~~a~~~~~~~~~--~~v~~~~~d~~ 100 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-----------------PDINFIGIEVHEPGVGKALKKIEEEGL--TNLRLLCGDAV 100 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-----------------CCccEEEEEechHHHHHHHHHHHHcCC--CCEEEEecCHH
Confidence 46799999999999999998876 457899999999999999998877665 4799999998
Q ss_pred ccCC--CCCCCeeEEEecccccccc--------CHHHHHHHHHhhccCCcEEEEEe
Q 036563 162 EALC--FEDSTMDGYTIAFGIRNVT--------HIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 162 ~~~~--~~~~~~D~v~~~~~l~~~~--------~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
..++ +++++||.|++++...+.. ....+++++.++|+|||.+++..
T Consensus 101 ~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 101 EVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred HHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 6655 6677899999876543221 14678999999999999999753
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=106.56 Aligned_cols=114 Identities=26% Similarity=0.344 Sum_probs=91.0
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
....+...+...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++....+.+
T Consensus 7 ~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~-----------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 69 (124)
T TIGR02469 7 VRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLV-----------------PNGRVYAIERNPEALRLIERNARRFGVS 69 (124)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHC-----------------CCceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 34456666666667899999999999999999886 3589999999999999999988776653
Q ss_pred CCceEEEEccccc-CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 151 DKSLLWVEGDAEA-LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 151 ~~~v~~~~~d~~~-~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.++.+|+.. .+...++||.|++..... ....+++++.+.|+|||.+++.
T Consensus 70 --~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 70 --NIVIVEGDAPEALEDSLPEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred --ceEEEeccccccChhhcCCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEE
Confidence 68888888764 222335899999876543 3468899999999999999864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=132.26 Aligned_cols=185 Identities=14% Similarity=0.117 Sum_probs=119.5
Q ss_pred hhhhHhhhhccccCcc-ccccccCCCCccccccccchhHHhHHHHHHHhHhhHHHh--hhhhhhhhhhhHHHHHHHHhhc
Q 036563 3 VRVVTRNLGSRLLPML-SSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYD--LMNDLMSGGLHRLWKDRLVSKL 79 (288)
Q Consensus 3 ~~~~~~~~~~~~~~~~-ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~--~~~~~~~~~~~~~~~~~~~~~l 79 (288)
+++++.+++.+.+... +|.+|+++...+..+........+....--... ..+. .....++...-..-.+.+.+.+
T Consensus 147 i~~~~~~~~~k~l~~~~~~~~~~kaR~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~gVFs~~~LD~GtrllL~~l 224 (378)
T PRK15001 147 IHTSTLELFEKVLGPTTTTLAWKKARLINCTFNEPPLADAPQTVSWKLEG--TDWTIHNHANVFSRTGLDIGARFFMQHL 224 (378)
T ss_pred CcHHHHHHHHHHhCccchhhhhhhhhheeccCCCCCCcCCCceeEEEEcC--ceEEEEecCCccCCCCcChHHHHHHHhC
Confidence 3456667777877554 334466665444433222111111100000000 0111 1123333333334456777888
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC-CCceEEEE
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP-DKSLLWVE 158 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~v~~~~ 158 (288)
+...+.+|||+|||+|.++..+++.. |..+++++|+|+.+++.+++++...+.. ..++++..
T Consensus 225 p~~~~~~VLDLGCGtGvi~i~la~~~-----------------P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~ 287 (378)
T PRK15001 225 PENLEGEIVDLGCGNGVIGLTLLDKN-----------------PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI 287 (378)
T ss_pred CcccCCeEEEEeccccHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE
Confidence 76666799999999999999999886 5689999999999999999988766432 13678888
Q ss_pred cccccCCCCCCCeeEEEecccccccc-----CHHHHHHHHHhhccCCcEEEEEe
Q 036563 159 GDAEALCFEDSTMDGYTIAFGIRNVT-----HIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 159 ~d~~~~~~~~~~~D~v~~~~~l~~~~-----~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.|+... .+..+||+|+++..+|... ...++++.+.++|+|||.++++.
T Consensus 288 ~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 288 NNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 887543 2345799999998876432 13578999999999999999874
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=116.76 Aligned_cols=112 Identities=20% Similarity=0.296 Sum_probs=91.6
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
...+.+.+...++.+|||+|||+|..+..+++..+ +..+++++|+++++++.+++++...++.
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~----------------~~g~V~~iD~~~~~~~~a~~~l~~~~~~- 123 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIE----------------RRGKVYTVEIVKELAIYAAQNIERLGYW- 123 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcC----------------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-
Confidence 34566777777788999999999999999888763 3478999999999999999998877664
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.++++..+|+.+......+||+|++..++.+++ +++.+.|+|||++++.
T Consensus 124 ~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 124 GVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIP 172 (205)
T ss_pred CcEEEEECCcccCCccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEE
Confidence 468999999876544456899999998876653 4678999999999864
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=114.34 Aligned_cols=111 Identities=18% Similarity=0.171 Sum_probs=88.3
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+.+.++..+++++||+|||.|+.+..+++. +..|+++|.|+..++.+.+.....++ .+
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-------------------G~~VtAvD~s~~al~~l~~~a~~~~l---~i 79 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ-------------------GFDVTAVDISPVALEKLQRLAEEEGL---DI 79 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHT-------------------T-EEEEEESSHHHHHHHHHHHHHTT----TE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-------------------CCeEEEEECCHHHHHHHHHHHhhcCc---ee
Confidence 445555556789999999999999999998 48999999999999999888877765 48
Q ss_pred EEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEec
Q 036563 155 LWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+....|+....++ +.||+|++..++++++ ....+++++...++|||++++..+
T Consensus 80 ~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 80 RTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 8999999887765 5799999988888775 356789999999999999887554
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.8e-13 Score=110.34 Aligned_cols=148 Identities=20% Similarity=0.225 Sum_probs=107.1
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
..+...++.+|||+|||+|.++..++.. + .+++++|+++.+++.++++....++.+.++.+
T Consensus 17 ~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~------------------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 77 (188)
T PRK14968 17 ENAVDKKGDRVLEVGTGSGIVAIVAAKN-G------------------KKVVGVDINPYAVECAKCNAKLNNIRNNGVEV 77 (188)
T ss_pred HhhhccCCCEEEEEccccCHHHHHHHhh-c------------------ceEEEEECCHHHHHHHHHHHHHcCCCCcceEE
Confidence 3333356779999999999999998887 2 79999999999999999988777664222888
Q ss_pred EEcccccCCCCCCCeeEEEecccccccc---------------------CHHHHHHHHHhhccCCcEEEEEeccCCChHH
Q 036563 157 VEGDAEALCFEDSTMDGYTIAFGIRNVT---------------------HIEKALAEAYRVLKRGGRFLCLELSHVDIPV 215 (288)
Q Consensus 157 ~~~d~~~~~~~~~~~D~v~~~~~l~~~~---------------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~ 215 (288)
..+|+.+. +.+.+||+|+++..+.... ....+++++.++|+|||.+++...+
T Consensus 78 ~~~d~~~~-~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~------ 150 (188)
T PRK14968 78 IRSDLFEP-FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS------ 150 (188)
T ss_pred Eecccccc-ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc------
Confidence 88887653 3445899999876543211 1356799999999999998864311
Q ss_pred HHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE--eeCCeeEEEEee
Q 036563 216 FKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN--LVGGVVAIHSGL 286 (288)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~--~~~~~~~~~~~~ 286 (288)
+...+++.++++++||+++.... +..+...+..++
T Consensus 151 ------------------------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T PRK14968 151 ------------------------------------LTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELV 187 (188)
T ss_pred ------------------------------------cCCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEe
Confidence 11346788899999998877643 344444444444
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=112.21 Aligned_cols=117 Identities=24% Similarity=0.354 Sum_probs=91.5
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+.+.+...+..+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...++. +
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-----------------~~~~v~~vDi~~~a~~~a~~n~~~n~~~--~ 82 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-----------------PDAKVTAVDINPDALELAKRNAERNGLE--N 82 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-----------------TCEEEEEEESBHHHHHHHHHHHHHTTCT--T
T ss_pred HHHHHHhhccCCeEEEecCChHHHHHHHHHhC-----------------CCCEEEEEcCCHHHHHHHHHHHHhcCcc--c
Confidence 34444443367799999999999999999986 4568999999999999999999998875 3
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccccccccC-----HHHHHHHHHhhccCCcEEEEEeccC
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH-----IEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+++...|..+. .++++||+|+++..++.-.+ ...+++.+.+.|+|||.++++....
T Consensus 83 v~~~~~d~~~~-~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 83 VEVVQSDLFEA-LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp EEEEESSTTTT-CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred ccccccccccc-ccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 99999997653 33678999999998765543 4678999999999999997654433
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.5e-13 Score=115.67 Aligned_cols=143 Identities=23% Similarity=0.351 Sum_probs=107.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+...+.. .+.+|||+|||+|.++..+++.. +...++++|+++.+++.++++....++.
T Consensus 78 ~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~-----------------~~~~v~~iD~~~~~~~~a~~~~~~~~~~-- 137 (251)
T TIGR03534 78 EAALERLKK-GPLRVLDLGTGSGAIALALAKER-----------------PDARVTAVDISPEALAVARKNAARLGLD-- 137 (251)
T ss_pred HHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC--
Confidence 444444442 34689999999999999999876 4579999999999999999998877663
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccC--------------------------HHHHHHHHHhhccCCcEEEEE
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--------------------------IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.+..+|+.+ +++.++||+|+++..+....+ ...+++++.++|+|||.+++.
T Consensus 138 ~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 138 NVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred eEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 79999999865 345678999999765432110 135788999999999999862
Q ss_pred eccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCe
Q 036563 207 ELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGV 279 (288)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~ 279 (288)
. . +...++++++|+++||+.+++.....|.
T Consensus 217 ~-~------------------------------------------~~~~~~~~~~l~~~gf~~v~~~~d~~~~ 246 (251)
T TIGR03534 217 I-G------------------------------------------YDQGEAVRALFEAAGFADVETRKDLAGK 246 (251)
T ss_pred E-C------------------------------------------ccHHHHHHHHHHhCCCCceEEEeCCCCC
Confidence 1 0 1134678889999999988887655543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.4e-13 Score=114.86 Aligned_cols=183 Identities=14% Similarity=0.116 Sum_probs=127.5
Q ss_pred hhHhhhhccccCccccccccCCCCccccccccchhHHhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCC
Q 036563 5 VVTRNLGSRLLPMLSSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPG 84 (288)
Q Consensus 5 ~~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (288)
.++.++..+...+.-+++.-+....++--.+.+..........+.....-.+-.....++...-+.-.+.+++.++...+
T Consensus 80 ~s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~ 159 (300)
T COG2813 80 RSAEKMLEKYGGPTKTDSARHCMRLHYYSENPPPFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLG 159 (300)
T ss_pred HHHHHHHHHhcCccccchHhhcceeEeecCCCCcccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCccCC
Confidence 46677777777776666644445555544444433333333322221111111223344544444556788899988777
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.+|||+|||.|.++..+++.. |..+++.+|+|..+++.+++++..++++ +..+...|....
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~~-----------------p~~~vtmvDvn~~Av~~ar~Nl~~N~~~--~~~v~~s~~~~~ 220 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKKS-----------------PQAKLTLVDVNARAVESARKNLAANGVE--NTEVWASNLYEP 220 (300)
T ss_pred CcEEEeCCCccHHHHHHHHhC-----------------CCCeEEEEecCHHHHHHHHHhHHHcCCC--ccEEEEeccccc
Confidence 799999999999999999997 5799999999999999999999988775 335666665443
Q ss_pred CCCCCCeeEEEeccccccccCH-----HHHHHHHHhhccCCcEEEEEec
Q 036563 165 CFEDSTMDGYTIAFGIRNVTHI-----EKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 165 ~~~~~~~D~v~~~~~l~~~~~~-----~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
. .+ +||+|++|..+|.-.+. .++++...+.|++||.|.++-.
T Consensus 221 v-~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 221 V-EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred c-cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 2 23 89999999999854432 4789999999999999998654
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=115.14 Aligned_cols=110 Identities=13% Similarity=0.062 Sum_probs=88.3
Q ss_pred cCCCCCCeEEEecCCccHHHHH-HHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh-cCCCCCceEE
Q 036563 79 LNPFPGMKHLDVAGGTGDVAFR-ILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE-RGYPDKSLLW 156 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~G~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~v~~ 156 (288)
+...++.+|+|||||.|.++.. ++..+. ++++++++|+++++++.|++.+.. .++. +++.|
T Consensus 119 ~~~~~p~~VldIGcGpgpltaiilaa~~~----------------p~~~~~giD~d~~ai~~Ar~~~~~~~gL~-~rV~F 181 (296)
T PLN03075 119 HVNGVPTKVAFVGSGPLPLTSIVLAKHHL----------------PTTSFHNFDIDPSANDVARRLVSSDPDLS-KRMFF 181 (296)
T ss_pred hhcCCCCEEEEECCCCcHHHHHHHHHhcC----------------CCCEEEEEeCCHHHHHHHHHHhhhccCcc-CCcEE
Confidence 3333678999999998755443 443332 678999999999999999999854 5665 78999
Q ss_pred EEcccccCCCCCCCeeEEEeccccccc--cCHHHHHHHHHhhccCCcEEEEE
Q 036563 157 VEGDAEALCFEDSTMDGYTIAFGIRNV--THIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 157 ~~~d~~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..+|+.+.....+.||+|++. +++++ .+..++++++++.|+|||.+++.
T Consensus 182 ~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 182 HTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 999988764334679999999 88887 58899999999999999999974
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-12 Score=105.54 Aligned_cols=115 Identities=28% Similarity=0.355 Sum_probs=96.0
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+..+-..+..|.+.++.+++|||||||..+..++... |.++++++|-++++++..+++....+
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~-----------------p~~~v~AIe~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAG-----------------PSGRVIAIERDEEALELIERNAARFG 82 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhC-----------------CCceEEEEecCHHHHHHHHHHHHHhC
Confidence 3444556778888999999999999999999999544 68999999999999999999999988
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+ +|++++.+++-..-....++|.|+.... .+...+|+.+...|+|||++++.
T Consensus 83 ~--~n~~vv~g~Ap~~L~~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 83 V--DNLEVVEGDAPEALPDLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred C--CcEEEEeccchHhhcCCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEE
Confidence 6 5999999998654112227999998776 35788999999999999999963
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=112.93 Aligned_cols=174 Identities=18% Similarity=0.191 Sum_probs=132.4
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
....+.+||||+||.|.....++...+. ....+...|.++..++.+++.+.+.++. +-++|.++
T Consensus 132 ~~g~pvrIlDIAaG~GRYvlDal~~~~~---------------~~~~i~LrDys~~Nv~~g~~li~~~gL~-~i~~f~~~ 195 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGRYVLDALEKHPE---------------RPDSILLRDYSPINVEKGRALIAERGLE-DIARFEQG 195 (311)
T ss_pred hcCCceEEEEeccCCcHHHHHHHHhCCC---------------CCceEEEEeCCHHHHHHHHHHHHHcCCc-cceEEEec
Confidence 3355679999999999999888888741 1268999999999999999999999997 45599999
Q ss_pred ccccC---CCCCCCeeEEEeccccccccCH---HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccc
Q 036563 160 DAEAL---CFEDSTMDGYTIAFGIRNVTHI---EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGE 233 (288)
Q Consensus 160 d~~~~---~~~~~~~D~v~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (288)
|+.+. .-.+...++++++..++.++|. ...|..+.+.+.|||+++. ...|..|.+..+...+..+
T Consensus 196 dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIy--TgQPwHPQle~IAr~LtsH------- 266 (311)
T PF12147_consen 196 DAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIY--TGQPWHPQLEMIARVLTSH------- 266 (311)
T ss_pred CCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEE--cCCCCCcchHHHHHHHhcc-------
Confidence 98664 2223457999999999999873 4579999999999999986 3445555554444433210
Q ss_pred cccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 234 LVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
+.-...+.+-.+..++.+++++|||+.+...-..+|++++..|+|
T Consensus 267 ---------r~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 267 ---------RDGKAWVMRRRSQAEMDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred ---------cCCCceEEEecCHHHHHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 000011233458999999999999999998888899999999876
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-12 Score=118.71 Aligned_cols=142 Identities=19% Similarity=0.207 Sum_probs=109.1
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..++... +..+++++|+|+.+++.++++....+ .++.++.+|+.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~-----------------p~a~VtAVDiS~~ALe~AreNa~~~g---~rV~fi~gDl~ 310 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALER-----------------PDAFVRASDISPPALETARKNAADLG---ARVEFAHGSWF 310 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEcchh
Confidence 45689999999999999988775 46899999999999999999987765 36899999986
Q ss_pred cCCC-CCCCeeEEEecccccccc---------------------C----HHHHHHHHHhhccCCcEEEEEeccCCChHHH
Q 036563 163 ALCF-EDSTMDGYTIAFGIRNVT---------------------H----IEKALAEAYRVLKRGGRFLCLELSHVDIPVF 216 (288)
Q Consensus 163 ~~~~-~~~~~D~v~~~~~l~~~~---------------------~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~ 216 (288)
+... ..++||+|+++....... + ...+++.+.+.|+|||.+++ |...
T Consensus 311 e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~------ 383 (423)
T PRK14966 311 DTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF------ 383 (423)
T ss_pred ccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc------
Confidence 5432 235799999987531110 0 23567777889999999874 2211
Q ss_pred HHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 217 KELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
...+.+++++++.||..+++.....|...++.+++
T Consensus 384 ------------------------------------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 384 ------------------------------------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred ------------------------------------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence 13567889999999999999888888888887764
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-12 Score=115.55 Aligned_cols=141 Identities=17% Similarity=0.266 Sum_probs=107.2
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.+|||+|||+|.++..++... +..+++++|+|+.+++.++++....++. .++.+..+|+.+.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-----------------~~~~v~avDis~~al~~a~~n~~~~~~~-~~v~~~~~d~~~~ 177 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-----------------PNAEVIAVDISPDALAVAEENAEKNQLE-HRVEFIQSNLFEP 177 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECchhcc
Confidence 689999999999999999886 4589999999999999999998877764 4699999998653
Q ss_pred CCCCCCeeEEEecccc-------------cccc------------CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHH
Q 036563 165 CFEDSTMDGYTIAFGI-------------RNVT------------HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKEL 219 (288)
Q Consensus 165 ~~~~~~~D~v~~~~~l-------------~~~~------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~ 219 (288)
++..+||+|+++... .+.+ ....++.++.+.|+|||++++ |....
T Consensus 178 -~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~-e~g~~-------- 247 (284)
T TIGR00536 178 -LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC-EIGNW-------- 247 (284)
T ss_pred -CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECcc--------
Confidence 334479999997431 1111 235678899999999999875 22110
Q ss_pred HHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHH-HcCCcEEEEEEeeCCeeEEEEeee
Q 036563 220 YDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMIS-DAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
..+.+.+++. +.||..+++.....|...++.+++
T Consensus 248 ----------------------------------q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~~ 282 (284)
T TIGR00536 248 ----------------------------------QQKSLKELLRIKFTWYDVENGRDLNGKERVVLGFY 282 (284)
T ss_pred ----------------------------------HHHHHHHHHHhcCCCceeEEecCCCCCceEEEEEe
Confidence 2345667777 468988888777778777777654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.9e-13 Score=114.90 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=80.8
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.+...++.+|||+|||+|.++..+++..+ +...|+++|+++.|.+......... +|+.++
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG----------------~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I 186 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVG----------------PEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPI 186 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhC----------------CCCEEEEEECcHHHHHHHHHHhhhc----CCCEEE
Confidence 44567889999999999999999999975 4578999999998665554443332 578899
Q ss_pred EcccccC---CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 158 EGDAEAL---CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 158 ~~d~~~~---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
..|+... ....+++|+|++... ..++...++.++.++|||||.|++
T Consensus 187 ~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 187 IEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred ECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEE
Confidence 9998642 223457999999874 233445567789999999999997
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-13 Score=113.68 Aligned_cols=112 Identities=20% Similarity=0.246 Sum_probs=91.6
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
....+.+.+...++.+|||||||+|..+..+++..+ +..+++++|+++++++.+++++...++
T Consensus 64 ~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~----------------~~~~V~~vE~~~~~~~~a~~~l~~~g~- 126 (212)
T PRK13942 64 MVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVG----------------KSGKVVTIERIPELAEKAKKTLKKLGY- 126 (212)
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcC----------------CCCEEEEEeCCHHHHHHHHHHHHHcCC-
Confidence 335667777888899999999999999998888764 357999999999999999999987776
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.++.++.+|+.....+..+||+|++......+ .+.+.+.|+|||.+++.
T Consensus 127 -~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 127 -DNVEVIVGDGTLGYEENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred -CCeEEEECCcccCCCcCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEE
Confidence 47999999987655556789999998766543 24567789999999874
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-12 Score=113.51 Aligned_cols=153 Identities=21% Similarity=0.283 Sum_probs=110.7
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
+.+.+.......++.+|||+|||+|.++..++... +..+++++|+++.+++.++++.. ....
T Consensus 96 l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-----------------~~~~v~~iDis~~~l~~a~~n~~-~~~~ 157 (275)
T PRK09328 96 LVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-----------------PDAEVTAVDISPEALAVARRNAK-HGLG 157 (275)
T ss_pred HHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHH-hCCC
Confidence 33444444455567899999999999999999886 46899999999999999999876 2222
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccc--------------------------cCHHHHHHHHHhhccCCcEEE
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV--------------------------THIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~--------------------------~~~~~~l~~~~~~L~pgG~l~ 204 (288)
.++.+..+|+... .+.++||+|+++...... .....+++++.++|+|||.++
T Consensus 158 -~~i~~~~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~ 235 (275)
T PRK09328 158 -ARVEFLQGDWFEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLL 235 (275)
T ss_pred -CcEEEEEccccCc-CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEE
Confidence 5799999997543 234689999997543211 112557888889999999998
Q ss_pred EEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEE
Q 036563 205 CLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHS 284 (288)
Q Consensus 205 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~ 284 (288)
+. ... ...+.+.+++++.||..++......|...+..
T Consensus 236 ~e-~g~------------------------------------------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~ 272 (275)
T PRK09328 236 LE-IGY------------------------------------------DQGEAVRALLAAAGFADVETRKDLAGRDRVVL 272 (275)
T ss_pred EE-ECc------------------------------------------hHHHHHHHHHHhCCCceeEEecCCCCCceEEE
Confidence 62 111 02356888999999998887655556666665
Q ss_pred ee
Q 036563 285 GL 286 (288)
Q Consensus 285 ~~ 286 (288)
++
T Consensus 273 ~~ 274 (275)
T PRK09328 273 GR 274 (275)
T ss_pred EE
Confidence 54
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-12 Score=114.36 Aligned_cols=142 Identities=23% Similarity=0.297 Sum_probs=105.3
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.+...++.+|||+|||+|.++..++... +..+++++|+|+.+++.++++....++. .++.+.
T Consensus 116 ~~~~~~~~~vLDlG~GsG~i~~~la~~~-----------------~~~~v~avDis~~al~~A~~n~~~~~~~-~~i~~~ 177 (284)
T TIGR03533 116 WLEPEPVKRILDLCTGSGCIAIACAYAF-----------------PEAEVDAVDISPDALAVAEINIERHGLE-DRVTLI 177 (284)
T ss_pred HhccCCCCEEEEEeCchhHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEE
Confidence 3333345689999999999999999886 4689999999999999999999887765 579999
Q ss_pred EcccccCCCCCCCeeEEEeccccc-------------ccc------------CHHHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 158 EGDAEALCFEDSTMDGYTIAFGIR-------------NVT------------HIEKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 158 ~~d~~~~~~~~~~~D~v~~~~~l~-------------~~~------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
.+|+.+. +++++||+|+++.... +.+ ....+++.+.+.|+|||++++ |...
T Consensus 178 ~~D~~~~-~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~-e~g~-- 253 (284)
T TIGR03533 178 QSDLFAA-LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV-EVGN-- 253 (284)
T ss_pred ECchhhc-cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE-EECc--
Confidence 9997542 3445799999974321 111 124578899999999999985 2211
Q ss_pred hHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEE
Q 036563 213 IPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAI 282 (288)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~ 282 (288)
+.+.+.+++.++||.-........|++..
T Consensus 254 -----------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 282 (284)
T TIGR03533 254 -----------------------------------------SMEALEEAYPDVPFTWLEFENGGDGVFLL 282 (284)
T ss_pred -----------------------------------------CHHHHHHHHHhCCCceeeecCCCcEEEEE
Confidence 23567778888888877776665565543
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-13 Score=112.68 Aligned_cols=160 Identities=21% Similarity=0.324 Sum_probs=114.5
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.+|||+|||.|.....+++..+. ++..++++|.|+.+++..+++..... .++.....|+...
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n---------------~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~Dlt~~ 134 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPN---------------NRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVWDLTSP 134 (264)
T ss_pred hhheeeccCCCcccchhhhcCCC---------------CCeEEEEcCCChHHHHHHHhccccch---hhhcccceeccch
Confidence 38999999999999999888631 34899999999999999988764432 4555566665442
Q ss_pred ----CCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCC
Q 036563 165 ----CFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGD 238 (288)
Q Consensus 165 ----~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (288)
+...+++|+|++.++|..+. ....++++++++|||||.+++-++...+-..++.-..... .....+-++
T Consensus 135 ~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i-----~~nfYVRgD 209 (264)
T KOG2361|consen 135 SLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCI-----SENFYVRGD 209 (264)
T ss_pred hccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCcee-----ecceEEccC
Confidence 45678899999999998775 4578999999999999999998887765444332211110 011112222
Q ss_pred CcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 239 RGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
.. ...|++.+++.++|.++||..++....
T Consensus 210 GT--------~~YfF~~eeL~~~f~~agf~~~~~~~~ 238 (264)
T KOG2361|consen 210 GT--------RAYFFTEEELDELFTKAGFEEVQLEVD 238 (264)
T ss_pred Cc--------eeeeccHHHHHHHHHhcccchhcccce
Confidence 21 113779999999999999998876543
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=119.21 Aligned_cols=113 Identities=15% Similarity=0.140 Sum_probs=85.2
Q ss_pred CCCCeEEEecCCccH----HHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh----cCCC---
Q 036563 82 FPGMKHLDVAGGTGD----VAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE----RGYP--- 150 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~----~~~~--- 150 (288)
.++.+|+|+|||||. ++..+.+.... ....+.+|+|+|+|+.|++.|++.... .+++
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~------------~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~ 165 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPK------------AREPDVKILATDIDLKALEKARAGIYPERELEDLPKAL 165 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhh------------cCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHH
Confidence 445799999999997 44455554320 000247899999999999999886411 0000
Q ss_pred ------------------CCceEEEEcccccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEE
Q 036563 151 ------------------DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 151 ------------------~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..++.|.+.|+.+.+++.++||+|+|.++++++++ ..++++++++.|+|||++++.
T Consensus 166 ~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 166 LARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred HhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 13689999999887766788999999999999964 457999999999999999974
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-13 Score=113.97 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=83.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|..+..+.+.. +..+++|+|+|+.|++.++++. +++.+..+|+.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~-----------------~~~~v~giDiS~~~l~~A~~~~-------~~~~~~~~d~~ 98 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLL-----------------PFKHIYGVEINEYAVEKAKAYL-------PNINIIQGSLF 98 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhC-----------------CCCeEEEEECCHHHHHHHHhhC-------CCCcEEEeecc
Confidence 46789999999999999998875 3589999999999999998764 35677888887
Q ss_pred cCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
. ++++++||+|+++.+++|++ +..++++++.+++ ++++++.+...
T Consensus 99 ~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 99 D-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred C-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 7 77788999999999999985 3567888888887 56788777644
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.7e-13 Score=112.09 Aligned_cols=110 Identities=18% Similarity=0.240 Sum_probs=89.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.+.+...++.+|||+|||+|..+..+++..+ +..+++++|+++.+++.+++++...++ .
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~----------------~~g~V~~vD~~~~~~~~A~~~~~~~g~--~ 128 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVG----------------RDGLVVSIERIPELAEKAERRLRKLGL--D 128 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhC----------------CCCEEEEEeCCHHHHHHHHHHHHHCCC--C
Confidence 4566777778889999999999999999988863 346799999999999999999988876 4
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.+..+|+........+||+|++.....++ .+.+.+.|+|||++++.
T Consensus 129 ~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 129 NVIVIVGDGTQGWEPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CeEEEECCcccCCcccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEE
Confidence 7999999987654344689999988765443 34578899999999864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.7e-13 Score=119.47 Aligned_cols=115 Identities=21% Similarity=0.226 Sum_probs=92.7
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
....++......++.+|||+|||+|.++..++.. +..++++|+++.|+..+++++...++.
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-------------------~~~v~g~Di~~~~~~~a~~nl~~~g~~ 230 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-------------------GAKVIGCDIDWKMVAGARINLEHYGIE 230 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-------------------CCeEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 3455666666677889999999999998776543 378999999999999999999888775
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccc--------cC-HHHHHHHHHhhccCCcEEEEE
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV--------TH-IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~--------~~-~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.+..+|+.+++..+++||+|+++..+... .+ ...+++++.++|+|||++++.
T Consensus 231 --~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 231 --DFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred --CCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 4889999999888777899999998653211 01 367899999999999999864
|
This family is found exclusively in the Archaea. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-12 Score=108.96 Aligned_cols=106 Identities=21% Similarity=0.270 Sum_probs=87.2
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
...+|||||||+|.++..+++.. |...++++|+++.+++.++++....++. ++.++.+|+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-----------------p~~~v~gvD~~~~~l~~a~~~~~~~~l~--ni~~i~~d~~ 76 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-----------------PDKNFLGIEIHTPIVLAANNKANKLGLK--NLHVLCGDAN 76 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-----------------CCCCEEEEEeeHHHHHHHHHHHHHhCCC--CEEEEccCHH
Confidence 34589999999999999999887 5689999999999999999988877763 8999999997
Q ss_pred cCC---CCCCCeeEEEeccccccccC--------HHHHHHHHHhhccCCcEEEEEe
Q 036563 163 ALC---FEDSTMDGYTIAFGIRNVTH--------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 163 ~~~---~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.+. ++++++|.|++++...+... ...+++++.++|+|||.|++..
T Consensus 77 ~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 77 ELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred HHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 643 44568999998876443322 1568999999999999998754
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7e-13 Score=116.66 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=82.8
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+.+.+. .+..+|||+|||+|.++..+++..+.. ....++++|+|+.|++.++++. ++
T Consensus 77 ~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~--------------~~~~v~giD~s~~~l~~A~~~~-------~~ 134 (272)
T PRK11088 77 LLAERLD-EKATALLDIGCGEGYYTHALADALPEI--------------TTMQLFGLDISKVAIKYAAKRY-------PQ 134 (272)
T ss_pred HHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccc--------------cCCeEEEECCCHHHHHHHHHhC-------CC
Confidence 3333333 345689999999999999998875200 0247999999999999987653 46
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+.+..+|+.++++++++||+|++.+.. ..++++.++|+|||.++++...
T Consensus 135 ~~~~~~d~~~lp~~~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 135 VTFCVASSHRLPFADQSLDAIIRIYAP-------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred CeEEEeecccCCCcCCceeEEEEecCC-------CCHHHHHhhccCCCEEEEEeCC
Confidence 889999999889888899999986541 2367899999999999987543
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=112.80 Aligned_cols=130 Identities=22% Similarity=0.315 Sum_probs=94.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|..+..+.+.. ..+++++|+++.+++.++++....++. .++.+..++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g------------------~~~v~giDis~~~l~~A~~n~~~~~~~-~~~~~~~~~- 177 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG------------------AKKVLAVDIDPQAVEAARENAELNGVE-LNVYLPQGD- 177 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC------------------CCeEEEEECCHHHHHHHHHHHHHcCCC-ceEEEccCC-
Confidence 457899999999999888766542 246999999999999999998776543 233332222
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcc
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGS 241 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (288)
.+||+|+++...+ ....+++++.++|+|||.+++......
T Consensus 178 -------~~fD~Vvani~~~---~~~~l~~~~~~~LkpgG~lilsgi~~~------------------------------ 217 (250)
T PRK00517 178 -------LKADVIVANILAN---PLLELAPDLARLLKPGGRLILSGILEE------------------------------ 217 (250)
T ss_pred -------CCcCEEEEcCcHH---HHHHHHHHHHHhcCCCcEEEEEECcHh------------------------------
Confidence 2699999875422 246788999999999999997543210
Q ss_pred hhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEE
Q 036563 242 YQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHS 284 (288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~ 284 (288)
..+++.+.+++.||+++.... .++...+..
T Consensus 218 ------------~~~~v~~~l~~~Gf~~~~~~~-~~~W~~~~~ 247 (250)
T PRK00517 218 ------------QADEVLEAYEEAGFTLDEVLE-RGEWVALVG 247 (250)
T ss_pred ------------hHHHHHHHHHHCCCEEEEEEE-eCCEEEEEE
Confidence 346788899999999888765 345555433
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=117.71 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=93.6
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+.+.+.+......+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...++.
T Consensus 185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-----------------p~~~v~~vDis~~Al~~A~~nl~~n~l~- 246 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-----------------PKIRLTLSDVSAAALESSRATLAANGLE- 246 (342)
T ss_pred HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-
Confidence 3455666665556789999999999999999886 4579999999999999999998887653
Q ss_pred CceEEEEcccccCCCCCCCeeEEEecccccccc-----CHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT-----HIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~-----~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
.++...|+... ..++||+|+++..+|... ....+++++.+.|+|||.++++.....
T Consensus 247 --~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l 307 (342)
T PRK09489 247 --GEVFASNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (342)
T ss_pred --CEEEEcccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCC
Confidence 46677776542 356899999999988532 347899999999999999998765443
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-12 Score=105.47 Aligned_cols=196 Identities=15% Similarity=0.114 Sum_probs=119.4
Q ss_pred hHHHHHHHhHhhHHHhhhhhhhh--hhhhHHHHHHHHhhcCCC------CCCeEEEecCCccHHHHHHHHhhhhhhhhhh
Q 036563 42 SQLVSNVFSSVAKNYDLMNDLMS--GGLHRLWKDRLVSKLNPF------PGMKHLDVAGGTGDVAFRILDTVNSIKRRAL 113 (288)
Q Consensus 42 ~~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~l~~~------~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~ 113 (288)
.+.-.+||+++...-+-+...+. ...+-...+.++..+... ...+.||+|||-|+.+..++-.+-
T Consensus 6 y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f------- 78 (218)
T PF05891_consen 6 YEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVF------- 78 (218)
T ss_dssp HHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC--------
T ss_pred HHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhc-------
Confidence 34456677776666664332221 111112234444444322 346899999999999987766542
Q ss_pred hcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccC--HHHHHH
Q 036563 114 QDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--IEKALA 191 (288)
Q Consensus 114 ~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~ 191 (288)
.+|..+|+.+..++.|++.+..... .-.++++..++++..+..+||+|++.+++.|++| ...+|+
T Consensus 79 -----------~~VDlVEp~~~Fl~~a~~~l~~~~~--~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~ 145 (218)
T PF05891_consen 79 -----------DEVDLVEPVEKFLEQAKEYLGKDNP--RVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLK 145 (218)
T ss_dssp -----------SEEEEEES-HHHHHHHHHHTCCGGC--CEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHH
T ss_pred -----------CEeEEeccCHHHHHHHHHHhcccCC--CcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHH
Confidence 7899999999999999987655211 2457788888887655679999999999999985 578999
Q ss_pred HHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEE
Q 036563 192 EAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVE 271 (288)
Q Consensus 192 ~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 271 (288)
+|+..|+|+|.+++-|....... ..+.....+. ..+.+.++++|++||++++.
T Consensus 146 RCk~~L~~~G~IvvKEN~~~~~~------------------~~~D~~DsSv---------TRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 146 RCKQALKPNGVIVVKENVSSSGF------------------DEFDEEDSSV---------TRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp HHHHHEEEEEEEEEEEEEESSSE------------------EEEETTTTEE---------EEEHHHHHHHHHHCT-EEEE
T ss_pred HHHHhCcCCcEEEEEecCCCCCC------------------cccCCccCee---------ecCHHHHHHHHHHcCCEEEE
Confidence 99999999999998765543210 0111111111 12568899999999999998
Q ss_pred EEEe---eCCeeEEEE
Q 036563 272 YENL---VGGVVAIHS 284 (288)
Q Consensus 272 ~~~~---~~~~~~~~~ 284 (288)
.+.- ..+.+.+..
T Consensus 199 ~~~Q~~fP~~L~pV~m 214 (218)
T PF05891_consen 199 EEKQKGFPKELYPVRM 214 (218)
T ss_dssp EEE-TT--TTS-EEEE
T ss_pred eccccCCCccceEEEE
Confidence 7643 335555543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.3e-12 Score=111.41 Aligned_cols=102 Identities=21% Similarity=0.256 Sum_probs=82.2
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.+|||+|||+|.++..++... +..+++++|+|+.+++.++++....++. .++.+..+|+.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-----------------p~~~V~avDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~ 196 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-----------------PDAEVDAVDISPDALAVAEINIERHGLE-DRVTLIESDLFAA 196 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-----------------CCCEEEEEeCCHHHHHHHHHHHHHhCCC-CcEEEEECchhhh
Confidence 689999999999999999886 4689999999999999999999887765 5799999997542
Q ss_pred CCCCCCeeEEEeccccc-------------ccc------------CHHHHHHHHHhhccCCcEEEE
Q 036563 165 CFEDSTMDGYTIAFGIR-------------NVT------------HIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 165 ~~~~~~~D~v~~~~~l~-------------~~~------------~~~~~l~~~~~~L~pgG~l~i 205 (288)
++..+||+|+++.... +.+ ....+++++.+.|+|||.+++
T Consensus 197 -l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 197 -LPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred -CCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 2345799999974321 111 124678999999999999985
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=105.87 Aligned_cols=111 Identities=19% Similarity=0.182 Sum_probs=84.0
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.....++.+|||+|||+|.++..++... ..+++++|+++.+++.++++....+. ++.+.
T Consensus 31 ~~~~~~~~~vLDlGcG~G~~~~~la~~~------------------~~~v~~vD~s~~~l~~a~~n~~~~~~---~~~~~ 89 (223)
T PRK14967 31 AEGLGPGRRVLDLCTGSGALAVAAAAAG------------------AGSVTAVDISRRAVRSARLNALLAGV---DVDVR 89 (223)
T ss_pred hcccCCCCeEEEecCCHHHHHHHHHHcC------------------CCeEEEEECCHHHHHHHHHHHHHhCC---eeEEE
Confidence 3344567899999999999998887752 25899999999999999988876553 57888
Q ss_pred EcccccCCCCCCCeeEEEeccccccccC---------------------HHHHHHHHHhhccCCcEEEEEeccC
Q 036563 158 EGDAEALCFEDSTMDGYTIAFGIRNVTH---------------------IEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 158 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.+|+... +++++||+|+++..+..... ...+++++.++|+|||.++++....
T Consensus 90 ~~d~~~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 90 RGDWARA-VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred ECchhhh-ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 8887653 34568999999864332111 3557889999999999999754433
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-11 Score=102.84 Aligned_cols=116 Identities=22% Similarity=0.271 Sum_probs=89.1
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+..+..+...+...++.+|||+|||+|.++..++... +..+++++|+++.+++.+++++...+
T Consensus 26 ~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-----------------~~~~V~~vD~s~~~~~~a~~n~~~~~ 88 (196)
T PRK07402 26 REVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-----------------PKGRVIAIERDEEVVNLIRRNCDRFG 88 (196)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-----------------CCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 3344456677777778899999999999999988764 45899999999999999999988776
Q ss_pred CCCCceEEEEccccc-CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 149 YPDKSLLWVEGDAEA-LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~-~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
. .+++++.+|+.. +......+|.+++.. ..+...+++++.+.|+|||++++..
T Consensus 89 ~--~~v~~~~~d~~~~~~~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 89 V--KNVEVIEGSAPECLAQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred C--CCeEEEECchHHHHhhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 6 378999998754 222223457665432 2356789999999999999999754
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.4e-12 Score=118.05 Aligned_cols=121 Identities=18% Similarity=0.241 Sum_probs=96.5
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
...+...+...++.+|||+|||+|..+..+++..+ +.++++++|+++.+++.+++++...++.
T Consensus 241 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~----------------~~g~v~a~D~~~~rl~~~~~n~~r~g~~- 303 (434)
T PRK14901 241 AQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMG----------------DQGEIWAVDRSASRLKKLQENAQRLGLK- 303 (434)
T ss_pred HHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhC----------------CCceEEEEcCCHHHHHHHHHHHHHcCCC-
Confidence 34455667778889999999999999999998864 3479999999999999999999988874
Q ss_pred CceEEEEcccccCC----CCCCCeeEEEecc------ccccccC----------------HHHHHHHHHhhccCCcEEEE
Q 036563 152 KSLLWVEGDAEALC----FEDSTMDGYTIAF------GIRNVTH----------------IEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 152 ~~v~~~~~d~~~~~----~~~~~~D~v~~~~------~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i 205 (288)
++.++.+|+...+ ...++||.|++.. ++++.++ ..++|.++.+.|||||.++.
T Consensus 304 -~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvy 382 (434)
T PRK14901 304 -SIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVY 382 (434)
T ss_pred -eEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 6999999988764 3356899999753 2333222 24679999999999999997
Q ss_pred EeccC
Q 036563 206 LELSH 210 (288)
Q Consensus 206 ~~~~~ 210 (288)
.+++.
T Consensus 383 stcsi 387 (434)
T PRK14901 383 ATCTL 387 (434)
T ss_pred EeCCC
Confidence 76654
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-12 Score=108.57 Aligned_cols=110 Identities=14% Similarity=0.045 Sum_probs=84.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc----------CCCC
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER----------GYPD 151 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~----------~~~~ 151 (288)
.++.+|||+|||.|..+..++++ +..|+++|+|+.+++.+.+..... ....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-------------------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 93 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-------------------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRA 93 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-------------------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeec
Confidence 45679999999999999999986 489999999999999764321100 0001
Q ss_pred CceEEEEcccccCCCC-CCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccC
Q 036563 152 KSLLWVEGDAEALCFE-DSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.++++.++|+.+++.. .++||.|+-..+++|++. ....++.+.++|+|||++++..+..
T Consensus 94 ~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 94 GNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred CceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 4688999999877532 357999999888888863 4568999999999999877665543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-12 Score=108.40 Aligned_cols=113 Identities=15% Similarity=0.202 Sum_probs=93.8
Q ss_pred HhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 76 VSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
..+.......+|||+|||+|..+..++++. +..+++++|+++.+.+.|++...-.++. .+++
T Consensus 37 ~~~~~~~~~~~IlDlGaG~G~l~L~la~r~-----------------~~a~I~~VEiq~~~a~~A~~nv~ln~l~-~ri~ 98 (248)
T COG4123 37 AAFAPVPKKGRILDLGAGNGALGLLLAQRT-----------------EKAKIVGVEIQEEAAEMAQRNVALNPLE-ERIQ 98 (248)
T ss_pred HhhcccccCCeEEEecCCcCHHHHHHhccC-----------------CCCcEEEEEeCHHHHHHHHHHHHhCcch-hcee
Confidence 345555557899999999999999999996 3489999999999999999999988887 8999
Q ss_pred EEEcccccCC--CCCCCeeEEEecccccccc------------------CHHHHHHHHHhhccCCcEEEEE
Q 036563 156 WVEGDAEALC--FEDSTMDGYTIAFGIRNVT------------------HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 156 ~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~------------------~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+++.|+..+. ....+||+|+||..+.... +.+.+++.+.++|||||.+.++
T Consensus 99 v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 99 VIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred EehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 9999998873 3445799999988754321 1366799999999999999974
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.4e-12 Score=110.99 Aligned_cols=136 Identities=23% Similarity=0.229 Sum_probs=101.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.+++..++.. ..+++++|++|.+++.++.+...+++. ..++....+..
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLG------------------A~~v~g~DiDp~AV~aa~eNa~~N~v~-~~~~~~~~~~~ 222 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLG------------------AKKVVGVDIDPQAVEAARENARLNGVE-LLVQAKGFLLL 222 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcC------------------CceEEEecCCHHHHHHHHHHHHHcCCc-hhhhcccccch
Confidence 67899999999999999998884 377999999999999999999988765 22223333322
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcch
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSY 242 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (288)
..+ ..++||+|++|-. ..+ ...+...+.++|+|||++++......
T Consensus 223 ~~~-~~~~~DvIVANIL-A~v--l~~La~~~~~~lkpgg~lIlSGIl~~------------------------------- 267 (300)
T COG2264 223 EVP-ENGPFDVIVANIL-AEV--LVELAPDIKRLLKPGGRLILSGILED------------------------------- 267 (300)
T ss_pred hhc-ccCcccEEEehhh-HHH--HHHHHHHHHHHcCCCceEEEEeehHh-------------------------------
Confidence 222 2358999998763 221 35788899999999999997542110
Q ss_pred hhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEE
Q 036563 243 QYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHS 284 (288)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~ 284 (288)
-.+.+.+.++++||.+++.... .+.++++.
T Consensus 268 -----------q~~~V~~a~~~~gf~v~~~~~~-~eW~~i~~ 297 (300)
T COG2264 268 -----------QAESVAEAYEQAGFEVVEVLER-EEWVAIVG 297 (300)
T ss_pred -----------HHHHHHHHHHhCCCeEeEEEec-CCEEEEEE
Confidence 2467788999999999998765 67776655
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=99.55 Aligned_cols=104 Identities=23% Similarity=0.331 Sum_probs=86.5
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.++.++...++. .+++++.+|...
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~------------------~~~~~gvdi~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~ 61 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG------------------AARVTGVDIDPEAVELARRNLPRNGLD-DRVEVIVGDARD 61 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC------------------TCEEEEEESSHHHHHHHHHHCHHCTTT-TTEEEEESHHHH
T ss_pred CCEEEEcCcchHHHHHHHHHHC------------------CCeEEEEEECHHHHHHHHHHHHHccCC-ceEEEEECchhh
Confidence 4589999999999999999884 289999999999999999999888775 679999999987
Q ss_pred CC--CCCCCeeEEEecccccccc--------CHHHHHHHHHhhccCCcEEEEE
Q 036563 164 LC--FEDSTMDGYTIAFGIRNVT--------HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 164 ~~--~~~~~~D~v~~~~~l~~~~--------~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.. +++++||+|+++..+.... ....+++++.++|+|||.++++
T Consensus 62 ~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 62 LPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp HHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 64 6778999999998876432 1357899999999999999875
|
... |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-12 Score=112.71 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=80.5
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..++... ..+++++|+++.+++.++++....++. .++.....+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g------------------~~~V~avDid~~al~~a~~n~~~n~~~-~~~~~~~~~~ 218 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG------------------AAKVVGIDIDPLAVESARKNAELNQVS-DRLQVKLIYL 218 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC------------------CCeEEEEECCHHHHHHHHHHHHHcCCC-cceEEEeccc
Confidence 356899999999999998877642 368999999999999999998877665 4566666653
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
. ...+++||+|+++...+ ....++.++.++|+|||.+++..+
T Consensus 219 ~--~~~~~~fDlVvan~~~~---~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 219 E--QPIEGKADVIVANILAE---VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred c--cccCCCceEEEEecCHH---HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2 23356899999976533 346789999999999999997543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-12 Score=112.15 Aligned_cols=185 Identities=18% Similarity=0.233 Sum_probs=116.7
Q ss_pred cccccccchhHHhHHHHHHHhHh--hH------HHhhh-----------hhhhh--hhhhH---HHHHHHHhhcCCCCCC
Q 036563 30 SFGFKEVPAEEKSQLVSNVFSSV--AK------NYDLM-----------NDLMS--GGLHR---LWKDRLVSKLNPFPGM 85 (288)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~--~~------~y~~~-----------~~~~~--~~~~~---~~~~~~~~~l~~~~~~ 85 (288)
.+....+.++++....+++|..+ .. .|... ...|. .+.|. ...+.+... ..++.
T Consensus 86 ~~~~~~~~~~dW~~~Wk~~~~P~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~--~~~g~ 163 (295)
T PF06325_consen 86 EIEIEEIEEEDWEEAWKKYFKPIRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKY--VKPGK 163 (295)
T ss_dssp --EEEE--HHCHHHHHHHH---EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHH--SSTTS
T ss_pred ceEEEEeccccchHHHHhcCccEEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHh--ccCCC
Confidence 44556777788888888887543 11 12111 11122 22232 222333333 23567
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+|||+|||||.+++..++.. ..+++++|+++.+++.++++...+++. .++.+. ... .
T Consensus 164 ~vLDvG~GSGILaiaA~klG------------------A~~v~a~DiDp~Av~~a~~N~~~N~~~-~~~~v~--~~~--~ 220 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAKLG------------------AKKVVAIDIDPLAVEAARENAELNGVE-DRIEVS--LSE--D 220 (295)
T ss_dssp EEEEES-TTSHHHHHHHHTT------------------BSEEEEEESSCHHHHHHHHHHHHTT-T-TCEEES--CTS--C
T ss_pred EEEEeCCcHHHHHHHHHHcC------------------CCeEEEecCCHHHHHHHHHHHHHcCCC-eeEEEE--Eec--c
Confidence 99999999999999998874 368999999999999999999999887 455442 211 2
Q ss_pred CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhh
Q 036563 166 FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYL 245 (288)
Q Consensus 166 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (288)
....+||+|++|-...- ...++..+.++|+|||++++......
T Consensus 221 ~~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~~---------------------------------- 263 (295)
T PF06325_consen 221 LVEGKFDLVVANILADV---LLELAPDIASLLKPGGYLILSGILEE---------------------------------- 263 (295)
T ss_dssp TCCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEGG----------------------------------
T ss_pred cccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccHH----------------------------------
Confidence 23478999998765332 35678889999999999997543221
Q ss_pred HHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEee
Q 036563 246 VESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGL 286 (288)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~ 286 (288)
..+++.+.+++ ||.+++... .++.+++..-+
T Consensus 264 --------~~~~v~~a~~~-g~~~~~~~~-~~~W~~l~~~K 294 (295)
T PF06325_consen 264 --------QEDEVIEAYKQ-GFELVEERE-EGEWVALVFKK 294 (295)
T ss_dssp --------GHHHHHHHHHT-TEEEEEEEE-ETTEEEEEEEE
T ss_pred --------HHHHHHHHHHC-CCEEEEEEE-ECCEEEEEEEe
Confidence 35678888877 999887765 56777766544
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.3e-12 Score=115.26 Aligned_cols=148 Identities=15% Similarity=0.135 Sum_probs=108.7
Q ss_pred hHHHHHHHhHhhHHHhh--hhhhh-----hhhhh-HHH--HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhh
Q 036563 42 SQLVSNVFSSVAKNYDL--MNDLM-----SGGLH-RLW--KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRR 111 (288)
Q Consensus 42 ~~~~~~~~~~~~~~y~~--~~~~~-----~~~~~-~~~--~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~ 111 (288)
-..+++.++..+..|.. ..... ..... ... .+.+.+.+....+..+||||||+|.++..++...
T Consensus 71 ~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~------ 144 (390)
T PRK14121 71 VGILKKALKIFSELFCADIISHNLAENSKKLSLKKPYILDIDNFLDFISKNQEKILIEIGFGSGRHLLYQAKNN------ 144 (390)
T ss_pred hHHHHHHHHHHHHHhhccccccccccccccccccccccCCHHHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhC------
Confidence 45677788888888852 11110 00000 001 1244555555556689999999999999999997
Q ss_pred hhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC--CCCCCCeeEEEeccccccccCH---
Q 036563 112 ALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL--CFEDSTMDGYTIAFGIRNVTHI--- 186 (288)
Q Consensus 112 ~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~--- 186 (288)
|...++|+|+++.++..+.+++...+++ |+.++.+|+..+ .++++++|.|++++...+....
T Consensus 145 -----------P~~~~iGIEI~~~~i~~a~~ka~~~gL~--NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRR 211 (390)
T PRK14121 145 -----------PNKLFIGIEIHTPSIEQVLKQIELLNLK--NLLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRR 211 (390)
T ss_pred -----------CCCCEEEEECCHHHHHHHHHHHHHcCCC--cEEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhh
Confidence 5789999999999999999998888774 899999998764 4677899999987764433222
Q ss_pred ---HHHHHHHHhhccCCcEEEEEec
Q 036563 187 ---EKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 187 ---~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
..++.++.++|+|||.+.+...
T Consensus 212 lv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 212 VISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 5789999999999999997543
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.8e-12 Score=108.05 Aligned_cols=110 Identities=25% Similarity=0.333 Sum_probs=90.0
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.......+..+|||||+|+|.++..+++.+ |+.+++.+|. |..++.+++ . +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-----------------P~l~~~v~Dl-p~v~~~~~~----~----~ 143 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAY-----------------PNLRATVFDL-PEVIEQAKE----A----D 143 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-----------------TTSEEEEEE--HHHHCCHHH----T----T
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHC-----------------CCCcceeecc-Hhhhhcccc----c----c
Confidence 344555666666789999999999999999998 6899999997 888888877 1 6
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCC--cEEEEEeccCC
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRG--GRFLCLELSHV 211 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pg--G~l~i~~~~~~ 211 (288)
+++++.+|+. -++|. +|++++.+++|++++ ...+|+++++.|+|| |+|+|.|...+
T Consensus 144 rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 144 RVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp TEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred ccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 9999999998 55565 999999999999975 467899999999999 99999988755
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.8e-12 Score=105.61 Aligned_cols=110 Identities=19% Similarity=0.292 Sum_probs=99.0
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+...+...|+++|+|.|.|+|.++..++...+ +.++++.+|+.++.++.|++++...++. +
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg----------------~~G~v~tyE~r~d~~k~A~~Nl~~~~l~-d 146 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVG----------------PEGHVTTYEIREDFAKTARENLSEFGLG-D 146 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhC----------------CCceEEEEEecHHHHHHHHHHHHHhccc-c
Confidence 4577888999999999999999999999999876 6799999999999999999999998887 5
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
++.+..+|+.+...++ .||.|++ .++++..+++++.++|+|||.+.+
T Consensus 147 ~v~~~~~Dv~~~~~~~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 147 RVTLKLGDVREGIDEE-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred ceEEEecccccccccc-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEE
Confidence 6999999998876655 8999986 567999999999999999999986
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-11 Score=98.46 Aligned_cols=128 Identities=13% Similarity=0.229 Sum_probs=103.7
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+|||+|||.|.+...+++.- -...++|+|.|+.+++.|+......+.+ +.++|.+.|+.+..
T Consensus 70 ~VlDLGtGNG~~L~~L~~eg-----------------f~~~L~GvDYs~~AV~LA~niAe~~~~~-n~I~f~q~DI~~~~ 131 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEG-----------------FQSKLTGVDYSEKAVELAQNIAERDGFS-NEIRFQQLDITDPD 131 (227)
T ss_pred ceeeccCCchHHHHHHHHhc-----------------CCCCccccccCHHHHHHHHHHHHhcCCC-cceeEEEeeccCCc
Confidence 99999999999999999884 2366999999999999998888888876 55999999998877
Q ss_pred CCCCCeeEEEecccccccc---C-----HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccC
Q 036563 166 FEDSTMDGYTIAFGIRNVT---H-----IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAG 237 (288)
Q Consensus 166 ~~~~~~D~v~~~~~l~~~~---~-----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (288)
+..+.||+|+=..++..+. + +...+..+.++|+|||.|+|..++.
T Consensus 132 ~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~--------------------------- 184 (227)
T KOG1271|consen 132 FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF--------------------------- 184 (227)
T ss_pred ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc---------------------------
Confidence 7778899998766654432 1 1345788899999999999854322
Q ss_pred CCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 238 DRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
|.+++.+.++..||......+
T Consensus 185 ----------------T~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 185 ----------------TKDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred ----------------cHHHHHHHHhcCCeEEEEeec
Confidence 788999999999998776553
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-11 Score=116.41 Aligned_cols=140 Identities=15% Similarity=0.171 Sum_probs=105.7
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+|||+|||+|.++..++... +..+++++|+|+.+++.++++....++. .++.+..+|+..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-----------------p~~~v~avDis~~al~~A~~N~~~~~l~-~~v~~~~~D~~~ 200 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-----------------PNANVIATDISLDAIEVAKSNAIKYEVT-DRIQIIHSNWFE 200 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-----------------CCCeEEEEECCHHHHHHHHHHHHHcCCc-cceeeeecchhh
Confidence 4689999999999999998876 4689999999999999999998877765 578999999754
Q ss_pred CCCCCCCeeEEEecccccc--------------cc------------CHHHHHHHHHhhccCCcEEEEEeccCCChHHHH
Q 036563 164 LCFEDSTMDGYTIAFGIRN--------------VT------------HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFK 217 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~--------------~~------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~ 217 (288)
. .+.++||+|+++..... .+ ....+++++.++|+|||.+++ +...
T Consensus 201 ~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~------- 271 (506)
T PRK01544 201 N-IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF------- 271 (506)
T ss_pred h-CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC-------
Confidence 2 23457999999754211 10 023467888899999999875 3221
Q ss_pred HHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEe
Q 036563 218 ELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSG 285 (288)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~ 285 (288)
...+.+.+++++.||..+++.....|...++.+
T Consensus 272 -----------------------------------~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 272 -----------------------------------KQEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred -----------------------------------chHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 134677888999999988877766676655554
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=104.80 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=86.6
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
...+.+.+...++.+|||+|||+|..+..+++.. .+++++|+++++++.+++++...++.
T Consensus 67 ~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-------------------~~v~~vd~~~~~~~~a~~~~~~~~~~- 126 (212)
T PRK00312 67 VARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-------------------RRVFSVERIKTLQWEAKRRLKQLGLH- 126 (212)
T ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-------------------CEEEEEeCCHHHHHHHHHHHHHCCCC-
Confidence 3456677777888999999999999998776653 58999999999999999998887764
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.+..+|........++||+|++...++++ .+.+.+.|+|||.+++.
T Consensus 127 -~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 127 -NVSVRHGDGWKGWPAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAP 174 (212)
T ss_pred -ceEEEECCcccCCCcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEE
Confidence 6899999976543234689999998766544 35678899999999874
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-11 Score=103.63 Aligned_cols=103 Identities=22% Similarity=0.295 Sum_probs=80.2
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..++.+|||+|||||.++..+++..+ +...|+++|+++ | .+. +++.++++|
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~----------------~~~~V~aVDi~~-~----------~~~--~~v~~i~~D 99 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIG----------------DKGRVIACDILP-M----------DPI--VGVDFLQGD 99 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcC----------------CCceEEEEeccc-c----------cCC--CCcEEEecC
Confidence 35678999999999999999999864 357999999988 2 111 468999999
Q ss_pred cccCC--------CCCCCeeEEEeccccccccCH-----------HHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 161 AEALC--------FEDSTMDGYTIAFGIRNVTHI-----------EKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 161 ~~~~~--------~~~~~~D~v~~~~~l~~~~~~-----------~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
+...+ +..++||+|+++.+.+...++ ..+|+++.++|+|||.|++..+....
T Consensus 100 ~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 100 FRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred CCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 88753 556789999998765544321 45899999999999999986665543
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.8e-11 Score=103.76 Aligned_cols=138 Identities=22% Similarity=0.294 Sum_probs=106.9
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+|||+|||+|.++..++.+. +..+|+++|+|+.+++.|+++....++ .++.++.+|....
T Consensus 113 ~ilDlGTGSG~iai~la~~~-----------------~~~~V~a~Dis~~Al~~A~~Na~~~~l--~~~~~~~~dlf~~- 172 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-----------------PDAEVIAVDISPDALALARENAERNGL--VRVLVVQSDLFEP- 172 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-----------------cCCeEEEEECCHHHHHHHHHHHHHcCC--ccEEEEeeecccc-
Confidence 79999999999999999997 468999999999999999999999877 3566666665432
Q ss_pred CCCCCeeEEEecccccccc-----------C--------------HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHH
Q 036563 166 FEDSTMDGYTIAFGIRNVT-----------H--------------IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELY 220 (288)
Q Consensus 166 ~~~~~~D~v~~~~~l~~~~-----------~--------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~ 220 (288)
. .++||+|++|...--.+ + ..+++.++.+.|+|||.+++- ..
T Consensus 173 ~-~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le-~g----------- 239 (280)
T COG2890 173 L-RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE-IG----------- 239 (280)
T ss_pred c-CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE-EC-----------
Confidence 2 23899999987621111 1 145688888999998888752 11
Q ss_pred HHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcC-CcEEEEEEeeCCeeEEEEeee
Q 036563 221 DYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAG-FQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~v~~~~~~~~~~~~~~~~k 287 (288)
+...+.+.+++++.| |..+......+|...+..+.+
T Consensus 240 -------------------------------~~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 240 -------------------------------LTQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred -------------------------------CCcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEEe
Confidence 124578899999999 788888888888888877764
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-11 Score=99.19 Aligned_cols=136 Identities=20% Similarity=0.256 Sum_probs=89.2
Q ss_pred HHHHhhcCCCC-CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 73 DRLVSKLNPFP-GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 73 ~~~~~~l~~~~-~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
+.+++.+...+ ...|-|+|||.+.++..+.+ ..+|+.+|.-.
T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~~--------------------~~~V~SfDLva----------------- 103 (219)
T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN--------------------KHKVHSFDLVA----------------- 103 (219)
T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----------------------EEEEESS------------------
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHhccc--------------------CceEEEeeccC-----------------
Confidence 34555555444 46899999999999855432 25799999854
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
.+-.+..+|+...|+++++.|++++..+|.. .+...+|.++.|+|||||.+.|.|...
T Consensus 104 ~n~~Vtacdia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~S--------------------- 161 (219)
T PF05148_consen 104 PNPRVTACDIANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKS--------------------- 161 (219)
T ss_dssp SSTTEEES-TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGG---------------------
T ss_pred CCCCEEEecCccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecc---------------------
Confidence 2345778999999999999999999888876 478999999999999999999987533
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
++.+.+.+.+.+++.||+.... +.....+.++..+|
T Consensus 162 -------------------Rf~~~~~F~~~~~~~GF~~~~~-d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 162 -------------------RFENVKQFIKALKKLGFKLKSK-DESNKHFVLFEFKK 197 (219)
T ss_dssp -------------------G-S-HHHHHHHHHCTTEEEEEE-E--STTEEEEEEEE
T ss_pred -------------------cCcCHHHHHHHHHHCCCeEEec-ccCCCeEEEEEEEE
Confidence 2446788999999999998875 44566666666665
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-11 Score=104.71 Aligned_cols=111 Identities=21% Similarity=0.382 Sum_probs=91.5
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..++.++...||.+|||.|.|+|.++..++..++ +.++++.+|+.++..+.|++++...++. .
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~----------------p~G~v~t~E~~~~~~~~A~~n~~~~gl~-~ 92 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVG----------------PTGHVYTYEFREDRAEKARKNFERHGLD-D 92 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHT----------------TTSEEEEEESSHHHHHHHHHHHHHTTCC-T
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhC----------------CCeEEEccccCHHHHHHHHHHHHHcCCC-C
Confidence 4677888999999999999999999999999886 6799999999999999999999999987 7
Q ss_pred ceEEEEcccccCCCC---CCCeeEEEeccccccccCHHHHHHHHHhhc-cCCcEEEE
Q 036563 153 SLLWVEGDAEALCFE---DSTMDGYTIAFGIRNVTHIEKALAEAYRVL-KRGGRFLC 205 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG~l~i 205 (288)
++.+...|+.+..+. +..+|.|++ .++++..++..+.+.| ++||++.+
T Consensus 93 ~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 93 NVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp TEEEEES-GGCG--STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEE
T ss_pred CceeEecceecccccccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEE
Confidence 999999998654332 357999986 5578999999999999 89999986
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=103.45 Aligned_cols=110 Identities=14% Similarity=0.030 Sum_probs=82.9
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc----------CC
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER----------GY 149 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~----------~~ 149 (288)
...++.+|||+|||.|..+..+++. +.+|+++|+|+.+++.+.+..... ..
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~-------------------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~ 94 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ-------------------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHY 94 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC-------------------CCeEEEEccCHHHHHHHHHHcCCCcccccccccccc
Confidence 3345679999999999999999886 489999999999999764321100 00
Q ss_pred CCCceEEEEcccccCCCC-CCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEec
Q 036563 150 PDKSLLWVEGDAEALCFE-DSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
...++++.++|+.++... ...||.|+-..++++++ .....++.+.++|+|||.++++..
T Consensus 95 ~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 95 QAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred ccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 114688999999877432 24799999888888886 346789999999999997655433
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.5e-11 Score=110.15 Aligned_cols=119 Identities=19% Similarity=0.274 Sum_probs=92.6
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+...+...++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...++
T Consensus 234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-----------------~~~v~a~D~s~~~l~~~~~n~~~~g~--- 293 (427)
T PRK10901 234 QLAATLLAPQNGERVLDACAAPGGKTAHILELAP-----------------QAQVVALDIDAQRLERVRENLQRLGL--- 293 (427)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-----------------CCEEEEEeCCHHHHHHHHHHHHHcCC---
Confidence 4455677778889999999999999999998862 37999999999999999999988765
Q ss_pred ceEEEEcccccCC--CCCCCeeEEEecccccc------cc------C----------HHHHHHHHHhhccCCcEEEEEec
Q 036563 153 SLLWVEGDAEALC--FEDSTMDGYTIAFGIRN------VT------H----------IEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 153 ~v~~~~~d~~~~~--~~~~~~D~v~~~~~l~~------~~------~----------~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
++.++.+|+...+ +..++||.|+++..... -+ . ..++|..+.+.|+|||.+++..+
T Consensus 294 ~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 294 KATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 3688899987653 23567999996553211 11 1 13689999999999999998766
Q ss_pred cCC
Q 036563 209 SHV 211 (288)
Q Consensus 209 ~~~ 211 (288)
+..
T Consensus 374 s~~ 376 (427)
T PRK10901 374 SIL 376 (427)
T ss_pred CCC
Confidence 543
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=103.65 Aligned_cols=110 Identities=20% Similarity=0.333 Sum_probs=86.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.+.+..+++.+|||||||+|..+..++...+ +...++++|..+...+.|++++...+..
T Consensus 62 a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg----------------~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-- 123 (209)
T PF01135_consen 62 ARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVG----------------PVGRVVSVERDPELAERARRNLARLGID-- 123 (209)
T ss_dssp HHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHS----------------TTEEEEEEESBHHHHHHHHHHHHHHTTH--
T ss_pred HHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcC----------------ccceEEEECccHHHHHHHHHHHHHhccC--
Confidence 4677888889999999999999999999999875 4578999999999999999999988774
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.+..+|.........+||.|++......++ ..+.+.|++||++++.
T Consensus 124 nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 124 NVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAP 171 (209)
T ss_dssp SEEEEES-GGGTTGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEE
T ss_pred ceeEEEcchhhccccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEE
Confidence 89999999876544456899999988775442 2367779999999974
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.4e-12 Score=106.08 Aligned_cols=130 Identities=22% Similarity=0.269 Sum_probs=86.6
Q ss_pred HhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEE
Q 036563 49 FSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIY 128 (288)
Q Consensus 49 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 128 (288)
|+..+..|......+. ..|...+...-+. ...++|+|||+|..+..++.+. .+|+
T Consensus 5 ~~~~a~~Y~~ARP~YP----tdw~~~ia~~~~~--h~~a~DvG~G~Gqa~~~iae~~-------------------k~VI 59 (261)
T KOG3010|consen 5 FDKQAADYLNARPSYP----TDWFKKIASRTEG--HRLAWDVGTGNGQAARGIAEHY-------------------KEVI 59 (261)
T ss_pred ccccHHHHhhcCCCCc----HHHHHHHHhhCCC--cceEEEeccCCCcchHHHHHhh-------------------hhhe
Confidence 3444555655444333 2344444443322 1279999999998888888776 6899
Q ss_pred EEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCc-EEEE
Q 036563 129 VCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGG-RFLC 205 (288)
Q Consensus 129 ~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG-~l~i 205 (288)
++|+|+.|++.+++.....-.. ........+...+.-.+++.|+|++.-++|++ |.+++.+++.|+||++| .+.+
T Consensus 60 atD~s~~mL~~a~k~~~~~y~~-t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF-dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 60 ATDVSEAMLKVAKKHPPVTYCH-TPSTMSSDEMVDLLGGEESVDLITAAQAVHWF-DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred eecCCHHHHHHhhcCCCccccc-CCccccccccccccCCCcceeeehhhhhHHhh-chHHHHHHHHHHcCCCCCEEEE
Confidence 9999999999998874322111 11222223333333347899999999999887 67889999999999877 4444
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-10 Score=99.35 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=77.3
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+|||+|||+|.++..++... +..+++++|+|+.+++.++++....+ .++..+|+.+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~-----------------~~~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~ 144 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL-----------------DGIELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYD 144 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechh
Confidence 4589999999999999998876 35789999999999999999987642 4778888765
Q ss_pred C-C-CCCCCeeEEEecccccccc----------------------C----HHHHHHHHHhhccCCcEEEEE
Q 036563 164 L-C-FEDSTMDGYTIAFGIRNVT----------------------H----IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 164 ~-~-~~~~~~D~v~~~~~l~~~~----------------------~----~~~~l~~~~~~L~pgG~l~i~ 206 (288)
. + ...++||+|+++....... + ...+++.+.++|+|||.+++.
T Consensus 145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3 1 1135799999987532110 0 246788888999999999863
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.5e-11 Score=102.50 Aligned_cols=126 Identities=16% Similarity=0.235 Sum_probs=93.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.+..+|||+|||+|.++..++... +..+++++|+++.|++.++++. +++.++.+|+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~-----------------~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~ 118 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRC-----------------KPEKIVCVELNPEFARIGKRLL-------PEAEWITSDV 118 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHhC-------cCCEEEECch
Confidence 345699999999999998887764 2479999999999999998763 4688999999
Q ss_pred ccCCCCCCCeeEEEeccccccccC--------------------HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHH
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTH--------------------IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYD 221 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~--------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 221 (288)
..... ..+||+|+++..+.+.+. ..+.+.....+|+|+|.+.++-.+.|
T Consensus 119 ~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~---------- 187 (279)
T PHA03411 119 FEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP---------- 187 (279)
T ss_pred hhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc----------
Confidence 87643 457999999998876531 13456677788888887765421111
Q ss_pred HhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCc
Q 036563 222 YYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQ 268 (288)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 268 (288)
.| ..-.+.++++++|+++||.
T Consensus 188 -------------------~y-------~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 188 -------------------YY-------DGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred -------------------cc-------cccCCHHHHHHHHHhcCcE
Confidence 00 1133788999999999996
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.9e-12 Score=103.06 Aligned_cols=154 Identities=14% Similarity=0.231 Sum_probs=116.3
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
..++||||+-|....++..+. ..+++-+|.|..|++.++..-. .. -.+....+|-+.+
T Consensus 74 p~a~diGcs~G~v~rhl~~e~------------------vekli~~DtS~~M~~s~~~~qd-p~---i~~~~~v~DEE~L 131 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEG------------------VEKLIMMDTSYDMIKSCRDAQD-PS---IETSYFVGDEEFL 131 (325)
T ss_pred cceeecccchhhhhHHHHhcc------------------hhheeeeecchHHHHHhhccCC-Cc---eEEEEEecchhcc
Confidence 479999999999999998873 4789999999999998875422 11 2467788998889
Q ss_pred CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhh
Q 036563 165 CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQY 244 (288)
Q Consensus 165 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (288)
++.++++|+|+.+..+|+.+|....+.+|+..|||+|.|+.. .....++.++...+....+.+.|.+-.
T Consensus 132 df~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fias---mlggdTLyELR~slqLAelER~GGiSp-------- 200 (325)
T KOG2940|consen 132 DFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS---MLGGDTLYELRCSLQLAELEREGGISP-------- 200 (325)
T ss_pred cccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhH---HhccccHHHHHHHhhHHHHHhccCCCC--------
Confidence 999999999999999999999999999999999999999842 333344445544444344444444322
Q ss_pred hHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 245 LVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
++..|....++-.+|..|||..+.+..
T Consensus 201 ---hiSPf~qvrDiG~LL~rAGF~m~tvDt 227 (325)
T KOG2940|consen 201 ---HISPFTQVRDIGNLLTRAGFSMLTVDT 227 (325)
T ss_pred ---CcChhhhhhhhhhHHhhcCcccceecc
Confidence 122344567888999999999877643
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.4e-11 Score=109.72 Aligned_cols=121 Identities=19% Similarity=0.295 Sum_probs=96.0
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+...+...++.+|||+|||+|..+.++++..+ +.++++++|+++.+++.+++++...++.
T Consensus 227 ~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~----------------~~g~V~a~Dis~~rl~~~~~n~~r~g~~-- 288 (431)
T PRK14903 227 QIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMK----------------DQGKILAVDISREKIQLVEKHAKRLKLS-- 288 (431)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC--
Confidence 3445566778889999999999999999998864 4579999999999999999999988874
Q ss_pred ceEEEEcccccCC-CCCCCeeEEEeccccccc------cC----------------HHHHHHHHHhhccCCcEEEEEecc
Q 036563 153 SLLWVEGDAEALC-FEDSTMDGYTIAFGIRNV------TH----------------IEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 153 ~v~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~------~~----------------~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
++.+...|+..++ +..++||.|++....... ++ ..++|.++.+.|+|||.++...++
T Consensus 289 ~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 289 SIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred eEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 6899999987764 345689999985433211 11 145699999999999999987776
Q ss_pred CC
Q 036563 210 HV 211 (288)
Q Consensus 210 ~~ 211 (288)
..
T Consensus 369 ~~ 370 (431)
T PRK14903 369 VT 370 (431)
T ss_pred CC
Confidence 54
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-10 Score=108.21 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=93.1
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+...+...++.+|||+|||+|..+..+++..+ +.++++++|+++.+++.+++++...++.
T Consensus 240 ~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~----------------~~~~v~avDi~~~~l~~~~~n~~~~g~~-- 301 (444)
T PRK14902 240 MLVAPALDPKGGDTVLDACAAPGGKTTHIAELLK----------------NTGKVVALDIHEHKLKLIEENAKRLGLT-- 301 (444)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhC----------------CCCEEEEEeCCHHHHHHHHHHHHHcCCC--
Confidence 3455566777788999999999999999998863 3579999999999999999999888875
Q ss_pred ceEEEEcccccCC--CCCCCeeEEEeccccccc------cC----------------HHHHHHHHHhhccCCcEEEEEec
Q 036563 153 SLLWVEGDAEALC--FEDSTMDGYTIAFGIRNV------TH----------------IEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 153 ~v~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~------~~----------------~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
++.++.+|+.... ++ ++||+|++....... ++ ...+|.++.++|+|||.++....
T Consensus 302 ~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 302 NIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred eEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 5999999987653 23 679999986532111 11 13579999999999999997655
Q ss_pred cC
Q 036563 209 SH 210 (288)
Q Consensus 209 ~~ 210 (288)
+.
T Consensus 381 s~ 382 (444)
T PRK14902 381 TI 382 (444)
T ss_pred CC
Confidence 54
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-11 Score=103.87 Aligned_cols=94 Identities=21% Similarity=0.272 Sum_probs=76.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
...++||||+|.|..+..++..+ .++++.|.|+.|....+++ | ...+ +..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-------------------~~v~aTE~S~~Mr~rL~~k----g-----~~vl--~~~ 143 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-------------------KEVYATEASPPMRWRLSKK----G-----FTVL--DID 143 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-------------------ceEEeecCCHHHHHHHHhC----C-----CeEE--ehh
Confidence 45689999999999999998887 6899999999997766543 2 3333 222
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+..-.+.+||+|.|.+++....+|..+|+.+++.|+|+|.+++.
T Consensus 144 ~w~~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 144 DWQQTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred hhhccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 23323457999999999999999999999999999999999863
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.3e-11 Score=110.25 Aligned_cols=122 Identities=19% Similarity=0.223 Sum_probs=94.5
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
...+...+.+.++.+|||+|||+|..+..+++.. +.++++++|+++.+++.+++++...++.
T Consensus 227 s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~-----------------~~~~v~a~D~~~~~l~~~~~n~~r~g~~- 288 (426)
T TIGR00563 227 AQWVATWLAPQNEETILDACAAPGGKTTHILELA-----------------PQAQVVALDIHEHRLKRVYENLKRLGLT- 288 (426)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHc-----------------CCCeEEEEeCCHHHHHHHHHHHHHcCCC-
Confidence 3556667788888999999999999999999876 3479999999999999999999888764
Q ss_pred CceEEEEcccccCCC--CCCCeeEEEecc------ccccccC----------------HHHHHHHHHhhccCCcEEEEEe
Q 036563 152 KSLLWVEGDAEALCF--EDSTMDGYTIAF------GIRNVTH----------------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~--~~~~~D~v~~~~------~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
..+.+..+|....+. ...+||.|++.. +++..++ ...+|.++.++|||||.++..+
T Consensus 289 ~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 289 IKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred eEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 334446677654432 456799999742 3443333 2468999999999999999887
Q ss_pred ccCC
Q 036563 208 LSHV 211 (288)
Q Consensus 208 ~~~~ 211 (288)
++..
T Consensus 369 cs~~ 372 (426)
T TIGR00563 369 CSVL 372 (426)
T ss_pred CCCC
Confidence 7764
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.2e-11 Score=106.07 Aligned_cols=110 Identities=22% Similarity=0.310 Sum_probs=87.0
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.+.+...++.+|||+|||+|.++..+++..+ ....++++|+++.+++.+++++...+. .
T Consensus 70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~----------------~~g~VvgVDis~~~l~~Ar~~l~~~g~--~ 131 (322)
T PRK13943 70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVG----------------EKGLVVSVEYSRKICEIAKRNVRRLGI--E 131 (322)
T ss_pred HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcC----------------CCCEEEEEECCHHHHHHHHHHHHHcCC--C
Confidence 4556666777788999999999999999988763 235799999999999999999887776 4
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.++.+|+........+||+|++...+.++ ...+.+.|+|||.+++.
T Consensus 132 nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 132 NVIFVCGDGYYGVPEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVP 179 (322)
T ss_pred cEEEEeCChhhcccccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEE
Confidence 7899999987654444679999987655433 33467889999998874
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.4e-11 Score=103.32 Aligned_cols=118 Identities=17% Similarity=0.148 Sum_probs=93.0
Q ss_pred HhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 76 VSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
...+...++.+|||+|||+|..+..+++..+ +.+.++++|+++.+++.+++++...++. ++.
T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~----------------~~g~v~a~D~~~~~l~~~~~n~~~~g~~--~v~ 125 (264)
T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMK----------------NEGAIVANEFSKSRTKVLIANINRCGVL--NVA 125 (264)
T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcC----------------CCCEEEEEcCCHHHHHHHHHHHHHcCCC--cEE
Confidence 3456677888999999999999999988864 3468999999999999999999888774 689
Q ss_pred EEEcccccCCCCCCCeeEEEeccccccc------cC----------------HHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 156 WVEGDAEALCFEDSTMDGYTIAFGIRNV------TH----------------IEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 156 ~~~~d~~~~~~~~~~~D~v~~~~~l~~~------~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
+...|+..++...+.||.|++....... ++ ...+|+++.++|||||+++....+..
T Consensus 126 ~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 126 VTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred EecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9999987765445569999985432211 11 13489999999999999998766553
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-10 Score=97.06 Aligned_cols=109 Identities=21% Similarity=0.271 Sum_probs=91.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..|.+.+...++.+|||||||+|..+..+++.. .+|+.+|..+...+.|++++...++.
T Consensus 62 A~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~-------------------~~V~siEr~~~L~~~A~~~L~~lg~~-- 120 (209)
T COG2518 62 ARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV-------------------GRVVSIERIEELAEQARRNLETLGYE-- 120 (209)
T ss_pred HHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh-------------------CeEEEEEEcHHHHHHHHHHHHHcCCC--
Confidence 457788889999999999999999999999886 69999999999999999999999985
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
|+.+.++|...-..+..+||.|++......++ +. +.+-|++||++++..-
T Consensus 121 nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP--~~----Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 121 NVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVP--EA----LLDQLKPGGRLVIPVG 170 (209)
T ss_pred ceEEEECCcccCCCCCCCcCEEEEeeccCCCC--HH----HHHhcccCCEEEEEEc
Confidence 69999999876544557899999988766553 22 5677899999997543
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-10 Score=107.53 Aligned_cols=119 Identities=22% Similarity=0.262 Sum_probs=93.2
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.....+...++.+|||+|||+|..+..+++..+ +..+++++|+++.+++.+++++...++. +
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~----------------~~~~V~avD~s~~~l~~~~~~~~~~g~~--~ 302 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQ----------------NRGQITAVDRYPQKLEKIRSHASALGIT--I 302 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhC----------------CCcEEEEEECCHHHHHHHHHHHHHhCCC--e
Confidence 344566667788999999999999999888763 3479999999999999999999888774 7
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccc------ccccc------C----------HHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFG------IRNVT------H----------IEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~------l~~~~------~----------~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
+.+..+|+..+. ++++||.|++... +..-+ + ...+|.++.+.|+|||.++...++..
T Consensus 303 v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 303 IETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 899999987764 4567999997422 11111 1 13589999999999999998877664
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=85.74 Aligned_cols=101 Identities=29% Similarity=0.375 Sum_probs=82.7
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+|+|+|||+|..+..+++. ...+++++|+++.++..+++....... .++.+...|+.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 60 (107)
T cd02440 1 RVLDLGCGTGALALALASG------------------PGARVTGVDISPVALELARKAAAALLA--DNVEVLKGDAEELP 60 (107)
T ss_pred CeEEEcCCccHHHHHHhcC------------------CCCEEEEEeCCHHHHHHHHHHHhcccc--cceEEEEcChhhhc
Confidence 5899999999999888872 358999999999999988753332222 57888999987765
Q ss_pred C-CCCCeeEEEecccccc-ccCHHHHHHHHHhhccCCcEEEEE
Q 036563 166 F-EDSTMDGYTIAFGIRN-VTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 166 ~-~~~~~D~v~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
. ...++|+|+++..+++ ......+++.+.+.|+|+|.+++.
T Consensus 61 ~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 61 PEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 4568999999999988 667888999999999999999864
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-10 Score=93.40 Aligned_cols=99 Identities=22% Similarity=0.251 Sum_probs=73.9
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
...++.+|||+|||+|.++..+++... +..+++++|+++.+ .. +++.++.+
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~----------------~~~~v~~vDis~~~-----------~~--~~i~~~~~ 79 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVG----------------GKGRVIAVDLQPMK-----------PI--ENVDFIRG 79 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhC----------------CCceEEEEeccccc-----------cC--CCceEEEe
Confidence 346688999999999999999988763 34689999999864 11 46788888
Q ss_pred ccccCC--------CCCCCeeEEEecccccc-----cc------CHHHHHHHHHhhccCCcEEEEEe
Q 036563 160 DAEALC--------FEDSTMDGYTIAFGIRN-----VT------HIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 160 d~~~~~--------~~~~~~D~v~~~~~l~~-----~~------~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
|+.+.. .+.++||+|+++.+.+. .. +...++..+.+.|+|||++++..
T Consensus 80 d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 80 DFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred eCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 876532 34567999998654211 11 13678999999999999999743
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.9e-10 Score=92.90 Aligned_cols=170 Identities=20% Similarity=0.167 Sum_probs=114.9
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+.+.++. .+.+|||||||||.-+.++++.+ |.....-.|+++..+...+......+++ +-
T Consensus 17 vL~~~l~~-~~~~vLEiaSGtGqHa~~FA~~l-----------------P~l~WqPSD~~~~~~~sI~a~~~~~~~~-Nv 77 (204)
T PF06080_consen 17 VLKQYLPD-SGTRVLEIASGTGQHAVYFAQAL-----------------PHLTWQPSDPDDNLRPSIRAWIAEAGLP-NV 77 (204)
T ss_pred HHHHHhCc-cCceEEEEcCCccHHHHHHHHHC-----------------CCCEEcCCCCChHHHhhHHHHHHhcCCc-cc
Confidence 34444443 22269999999999999999998 5788899999998877777776666654 22
Q ss_pred eEEEEcccccCCC--------CCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCCh---HHHHHHH
Q 036563 154 LLWVEGDAEALCF--------EDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDI---PVFKELY 220 (288)
Q Consensus 154 v~~~~~d~~~~~~--------~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~---~~~~~~~ 220 (288)
...+..|+...+. ..+.||.|++.+++|-.+ ..+.+++.+.++|++||.|++-..-..+. +.-...+
T Consensus 78 ~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~F 157 (204)
T PF06080_consen 78 RPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAF 157 (204)
T ss_pred CCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHH
Confidence 2345566655422 245899999999998665 45779999999999999999743322111 1112223
Q ss_pred HHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeE
Q 036563 221 DYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVA 281 (288)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~ 281 (288)
+...+..-|..| ..+.+++.++.+++|++.++.....-+...
T Consensus 158 D~sLr~rdp~~G-------------------iRD~e~v~~lA~~~GL~l~~~~~MPANN~~ 199 (204)
T PF06080_consen 158 DASLRSRDPEWG-------------------IRDIEDVEALAAAHGLELEEDIDMPANNLL 199 (204)
T ss_pred HHHHhcCCCCcC-------------------ccCHHHHHHHHHHCCCccCcccccCCCCeE
Confidence 332222212211 347889999999999998887776554333
|
The function of this family is unknown. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-10 Score=99.25 Aligned_cols=109 Identities=16% Similarity=0.146 Sum_probs=83.9
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||||||+|.++..+++.. +..+++++|+++++++.+++.+...+.. ++++++.+|+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-----------------p~~~v~~VEidp~vi~~A~~~f~~~~~~-~rv~v~~~Da 126 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-----------------PDTRQTAVEINPQVIAVARNHFELPENG-ERFEVIEADG 126 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-----------------CCCeEEEEECCHHHHHHHHHHcCCCCCC-CceEEEECCH
Confidence 345789999999999999998886 5689999999999999999887543322 6899999998
Q ss_pred ccC-CCCCCCeeEEEecccc-cccc---CHHHHHHHHHhhccCCcEEEEEec
Q 036563 162 EAL-CFEDSTMDGYTIAFGI-RNVT---HIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 162 ~~~-~~~~~~~D~v~~~~~l-~~~~---~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+. ....++||+|++...- ...+ ....+++++.+.|+|||.+++.-+
T Consensus 127 ~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 127 AEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 654 2223579999986421 1111 136899999999999999997533
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=104.45 Aligned_cols=173 Identities=20% Similarity=0.257 Sum_probs=100.5
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC--------CCce
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP--------DKSL 154 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~--------~~~v 154 (288)
++.+|||+|||-|..+.-+... ....++|+|++...++.|+++.....-. .-..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~------------------~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a 123 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA------------------KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIA 123 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT------------------T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEE
T ss_pred CCCeEEEecCCCchhHHHHHhc------------------CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchh
Confidence 6789999999988766666555 2489999999999999999998321100 0235
Q ss_pred EEEEcccccC----CCCC--CCeeEEEecccccccc----CHHHHHHHHHhhccCCcEEEEEeccCCChHHHH-HHHHHh
Q 036563 155 LWVEGDAEAL----CFED--STMDGYTIAFGIRNVT----HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFK-ELYDYY 223 (288)
Q Consensus 155 ~~~~~d~~~~----~~~~--~~~D~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~~~~~~ 223 (288)
.++.+|.... .+++ ..||+|-|.+++|+.= ....+|+++...|+|||+|+.. .|+...+. .+....
T Consensus 124 ~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT---~~d~~~i~~~l~~~~ 200 (331)
T PF03291_consen 124 EFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT---TPDSDEIVKRLREKK 200 (331)
T ss_dssp EEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE---EE-HHHHHCCHHC-E
T ss_pred heeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE---ecCHHHHHHHHHhhc
Confidence 6677776543 1333 4899999999999763 2456899999999999999953 34444331 122100
Q ss_pred hcccccccccc-----ccCC------CcchhhhHH-HH----hcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 224 SFSVIPAIGEL-----VAGD------RGSYQYLVE-SV----RRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 224 ~~~~~~~~~~~-----~~~~------~~~~~~~~~-~~----~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
.....+.++.- +..+ ...|.+..+ .+ ..+...+.+.+++++.|++.+...++.
T Consensus 201 ~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~ 269 (331)
T PF03291_consen 201 SNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFH 269 (331)
T ss_dssp EECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHH
T ss_pred ccccccccCCccEEEEecccCCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChH
Confidence 00000001000 0000 112222111 11 124568899999999999999877653
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-10 Score=94.30 Aligned_cols=129 Identities=22% Similarity=0.241 Sum_probs=90.0
Q ss_pred hHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCC--CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceE
Q 036563 50 SSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFP--GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRI 127 (288)
Q Consensus 50 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v 127 (288)
+..+..|+.-.+... ++........+.+..+. ..-|||||||+|..+..+.+. +..+
T Consensus 17 d~eA~kYt~nsri~~--IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-------------------Gh~w 75 (270)
T KOG1541|consen 17 DTEAPKYTQNSRIVL--IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS-------------------GHQW 75 (270)
T ss_pred hhhhhhccccceeee--ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC-------------------CceE
Confidence 445666765433322 23333344445554433 567999999999998777664 4889
Q ss_pred EEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc-cCCCCCCCeeEEEecccccccc-------CH----HHHHHHHHh
Q 036563 128 YVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE-ALCFEDSTMDGYTIAFGIRNVT-------HI----EKALAEAYR 195 (288)
Q Consensus 128 ~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~D~v~~~~~l~~~~-------~~----~~~l~~~~~ 195 (288)
+|+|+|+.|++.|.++-.+ -.++.+|+- .+||..++||.+|+..+++++= ++ ..++..++.
T Consensus 76 iGvDiSpsML~~a~~~e~e-------gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~ 148 (270)
T KOG1541|consen 76 IGVDISPSMLEQAVERELE-------GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYS 148 (270)
T ss_pred EeecCCHHHHHHHHHhhhh-------cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhh
Confidence 9999999999999874322 246777764 4689999999999877765441 22 346778999
Q ss_pred hccCCcEEEEE
Q 036563 196 VLKRGGRFLCL 206 (288)
Q Consensus 196 ~L~pgG~l~i~ 206 (288)
.|++|+..++.
T Consensus 149 ~l~rg~raV~Q 159 (270)
T KOG1541|consen 149 CLKRGARAVLQ 159 (270)
T ss_pred hhccCceeEEE
Confidence 99999999863
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-10 Score=97.88 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=85.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|..+..++...+ +.++++++|+++++++.+++++...++. .+++++.+|+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~----------------~~g~v~tiD~d~~~~~~A~~n~~~~gl~-~~i~~~~gda 129 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALP----------------EDGRITAIDIDKEAYEVGLEFIKKAGVD-HKINFIQSDA 129 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEccH
Confidence 3467999999999999999888764 4689999999999999999999999887 7899999998
Q ss_pred ccC-C-----CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 162 EAL-C-----FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 162 ~~~-~-----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
.+. + .+.++||+|++...- +.....+..+.++|+|||.+++
T Consensus 130 ~~~L~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 130 LSALDQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HHHHHHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEE
Confidence 653 1 124589999975431 2346788999999999998875
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.1e-10 Score=91.46 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=81.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+++.+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++.... +
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-------------------~~v~~vE~~~~~~~~~~~~~~~~----~ 59 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERA-------------------ARVTAIEIDPRLAPRLREKFAAA----D 59 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcC-------------------CeEEEEECCHHHHHHHHHHhccC----C
Confidence 345667777777899999999999999998873 78999999999999999887542 5
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhh--ccCCcEEEE
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRV--LKRGGRFLC 205 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~--L~pgG~l~i 205 (288)
+++++.+|+.+.++++..+|.|+++..++.. ...+..+.+. +.++|.+++
T Consensus 60 ~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 60 NLTVIHGDALKFDLPKLQPYKVVGNLPYNIS---TPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred CEEEEECchhcCCccccCCCEEEECCCcccH---HHHHHHHHhcCCCcceEEEEE
Confidence 8999999999887776679999988766532 2334444332 346777764
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-09 Score=95.19 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=86.6
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..++.+|||||+++|..+..++...+ +.++++.+|.+++..+.|++.+...++. ++++++.+|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~----------------~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-~~I~li~Gd 178 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLP----------------ESGCLVACERDSNSLEVAKRYYELAGVS-HKVNVKHGL 178 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcC
Confidence 34467999999999999999998764 4578999999999999999999999987 789999999
Q ss_pred cccC-C-C----CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 161 AEAL-C-F----EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 161 ~~~~-~-~----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+.+. + + ..++||+|++...= .+....++.+.++|+|||.+++
T Consensus 179 A~e~L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 179 AAESLKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred HHHHHHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEE
Confidence 8653 2 1 13579999976541 2457788999999999999885
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.9e-10 Score=95.89 Aligned_cols=173 Identities=18% Similarity=0.167 Sum_probs=112.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC----ceEEE
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK----SLLWV 157 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~----~v~~~ 157 (288)
+++..++|+|||-|.-++.+-+.. ...++++||+...+++|+++.....-... .+.|+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg------------------I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~ 177 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG------------------IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFI 177 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc------------------ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEE
Confidence 456789999999988776665542 37899999999999999998764422101 36788
Q ss_pred EcccccC------CCCCCCeeEEEeccccccc-c---CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHh-hcc
Q 036563 158 EGDAEAL------CFEDSTMDGYTIAFGIRNV-T---HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYY-SFS 226 (288)
Q Consensus 158 ~~d~~~~------~~~~~~~D~v~~~~~l~~~-~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~-~~~ 226 (288)
.+|.... ++.+.+||+|-|.+++|+. . ....+|.++.+.|+|||+++ -+.|+......-.... ...
T Consensus 178 ~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI---gTiPdsd~Ii~rlr~~e~~~ 254 (389)
T KOG1975|consen 178 AADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI---GTIPDSDVIIKRLRAGEVER 254 (389)
T ss_pred EeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE---EecCcHHHHHHHHHhccchh
Confidence 8886542 3345559999999999865 2 34568999999999999998 5566665543322221 000
Q ss_pred cc------------ccccccccCCCcchhh-hHHHH---hcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 227 VI------------PAIGELVAGDRGSYQY-LVESV---RRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 227 ~~------------~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
.. +.-+..... ...|++ +.+.+ ..+...+.+..+.++-|++.+...++.
T Consensus 255 ~gNdiykv~y~~~~~k~~~~p~f-G~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~ 319 (389)
T KOG1975|consen 255 FGNDIYKVTYEIEFQKEFDVPPF-GAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFA 319 (389)
T ss_pred hcceeeeEeeeeecccccCCCCc-cceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHH
Confidence 00 111111111 122332 22222 223456788999999999998877653
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-10 Score=99.69 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=83.4
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC---CCCCceEEEE
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG---YPDKSLLWVE 158 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~v~~~~ 158 (288)
+.+.+||+||||+|..+..++++. ...+++++|+++.+++.+++.+...+ ..+++++++.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-----------------~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~ 137 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-----------------SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI 137 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-----------------CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE
Confidence 345799999999999999998763 24789999999999999999876432 1247899999
Q ss_pred cccccC-CCCCCCeeEEEeccccccccC----HHHHHHHHHhhccCCcEEEEE
Q 036563 159 GDAEAL-CFEDSTMDGYTIAFGIRNVTH----IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 159 ~d~~~~-~~~~~~~D~v~~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+|+... ....++||+|++...-...+. ...+++.+++.|+|||.+++.
T Consensus 138 ~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 138 GDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 998764 234568999998654322221 256789999999999998863
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-09 Score=97.20 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=80.5
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHH--hh---hcCCCCCceEE
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKR--AL---ERGYPDKSLLW 156 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~--~~---~~~~~~~~v~~ 156 (288)
..+.+||++|||+|..+..+++.. +..+++++|+++++++.|++. +. ...+.++++++
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-----------------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~v 211 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-----------------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNV 211 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-----------------CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEE
Confidence 345699999999999888888763 357999999999999999962 11 12233479999
Q ss_pred EEcccccC-CCCCCCeeEEEecccccc---ccC--HHHHHHHHHhhccCCcEEEEE
Q 036563 157 VEGDAEAL-CFEDSTMDGYTIAFGIRN---VTH--IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 157 ~~~d~~~~-~~~~~~~D~v~~~~~l~~---~~~--~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+.+|+... ....++||+|++...-.. ... ...+++.+++.|+|||.+++.
T Consensus 212 vi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 212 HVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99998764 334568999998753111 111 256899999999999999864
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-09 Score=91.24 Aligned_cols=134 Identities=19% Similarity=0.299 Sum_probs=101.8
Q ss_pred HHHHhhcCCC-CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 73 DRLVSKLNPF-PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 73 ~~~~~~l~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
+.+++.+... ....|-|+|||.+.++. . ....|+.+|+-+
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~------------------~~~kV~SfDL~a----------------- 209 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----S------------------ERHKVHSFDLVA----------------- 209 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh----c------------------cccceeeeeeec-----------------
Confidence 3455555433 34578899999998875 1 236789999744
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
.+-+++.+|+.+.|+++++.|++++..+|.. .+...++.+++|+|++||.+.|.|...
T Consensus 210 ~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S--------------------- 267 (325)
T KOG3045|consen 210 VNERVIACDMRNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS--------------------- 267 (325)
T ss_pred CCCceeeccccCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh---------------------
Confidence 3567888999999999999999998887765 478999999999999999999977532
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
+|.+...+...|...||.+... ......+..+...|
T Consensus 268 -------------------Rf~dv~~f~r~l~~lGF~~~~~-d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 268 -------------------RFSDVKGFVRALTKLGFDVKHK-DVSNKYFTLFEFKK 303 (325)
T ss_pred -------------------hcccHHHHHHHHHHcCCeeeeh-hhhcceEEEEEEec
Confidence 2447778999999999986554 44566666666555
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-09 Score=90.16 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=89.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.+...++.... ..+||||||++|..+..+++..+ ++++++.+|+++...+.|++.+...++
T Consensus 35 ~lL~~l~~~~~---~k~vLEIGt~~GySal~la~~l~----------------~~g~i~tiE~~~~~~~~A~~~~~~ag~ 95 (205)
T PF01596_consen 35 QLLQMLVRLTR---PKRVLEIGTFTGYSALWLAEALP----------------EDGKITTIEIDPERAEIARENFRKAGL 95 (205)
T ss_dssp HHHHHHHHHHT----SEEEEESTTTSHHHHHHHHTST----------------TTSEEEEEESSHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHhcC---CceEEEeccccccHHHHHHHhhc----------------ccceEEEecCcHHHHHHHHHHHHhcCC
Confidence 33344444443 46999999999999999999874 568999999999999999999998888
Q ss_pred CCCceEEEEcccccC-C-----CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 150 PDKSLLWVEGDAEAL-C-----FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~-~-----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
. .+++++.+|+.+. + ...++||+|++...- .+....+..+.++|+|||.+++
T Consensus 96 ~-~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 96 D-DRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp G-GGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEE
T ss_pred C-CcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEE
Confidence 6 7899999998653 1 123579999986642 3457788889999999999985
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.1e-10 Score=93.75 Aligned_cols=146 Identities=20% Similarity=0.195 Sum_probs=99.9
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh-cC--------
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE-RG-------- 148 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~-------- 148 (288)
.+...++.+||..|||.|.....+++. +.+|+|+|+|+.+++.+.+.... ..
T Consensus 32 ~l~~~~~~rvLvPgCG~g~D~~~La~~-------------------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~ 92 (218)
T PF05724_consen 32 SLALKPGGRVLVPGCGKGYDMLWLAEQ-------------------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFK 92 (218)
T ss_dssp HHTTSTSEEEEETTTTTSCHHHHHHHT-------------------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEE
T ss_pred hcCCCCCCeEEEeCCCChHHHHHHHHC-------------------CCeEEEEecCHHHHHHHHHHhccCCCccccccee
Confidence 355667789999999999999999987 38999999999999988443221 10
Q ss_pred -CCCCceEEEEcccccCCCCC-CCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhh
Q 036563 149 -YPDKSLLWVEGDAEALCFED-STMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYS 224 (288)
Q Consensus 149 -~~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~ 224 (288)
....++.+.++|+..++... ++||+|+=..++..++ ...+..+.+.++|+|||.++++.+..+...
T Consensus 93 ~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~---------- 162 (218)
T PF05724_consen 93 RYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE---------- 162 (218)
T ss_dssp EETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC----------
T ss_pred eecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC----------
Confidence 11246789999998875333 4799999888877775 457789999999999999554433322110
Q ss_pred ccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 225 FSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
. .+++ | -.+.+++++++. .+|++...+.
T Consensus 163 ---------~-~GPP--f---------~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 163 ---------M-EGPP--F---------SVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp ---------S-SSSS---------------HHHHHHHHT-TTEEEEEEEE
T ss_pred ---------C-CCcC--C---------CCCHHHHHHHhc-CCcEEEEEec
Confidence 0 0011 1 126788888888 8888877664
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-09 Score=101.46 Aligned_cols=112 Identities=13% Similarity=0.165 Sum_probs=86.0
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+.+.+.+.+.+...++.+|||+|||+|.++..+++.. .+++++|+|+.|++.++++....+
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-------------------~~V~gvD~s~~al~~A~~n~~~~~ 343 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-------------------AEVVGVEGVEAMVERARENARRNG 343 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-------------------CEEEEEeCCHHHHHHHHHHHHHcC
Confidence 3444566667776777899999999999999988774 789999999999999999988777
Q ss_pred CCCCceEEEEcccccC----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 149 YPDKSLLWVEGDAEAL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+. ++.+..+|+.+. ++.+++||+|+++..-.. ....++.+.+ ++|++.+++
T Consensus 344 ~~--~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyv 398 (443)
T PRK13168 344 LD--NVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYV 398 (443)
T ss_pred CC--ceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEE
Confidence 64 799999998653 234567999998766433 3345555555 688887775
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-09 Score=97.78 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=83.5
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..++.. ...+++++|+|+.+++.+++++..+++...+++++.+|+.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~------------------ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~ 281 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG------------------GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF 281 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC------------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH
Confidence 4679999999999998776543 2358999999999999999999888774237899999987
Q ss_pred cCC----CCCCCeeEEEecccccccc---------CHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 163 ALC----FEDSTMDGYTIAFGIRNVT---------HIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 163 ~~~----~~~~~~D~v~~~~~l~~~~---------~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+.- ...++||+|+++...-... +...++..+.++|+|||.+++..+++
T Consensus 282 ~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 282 KLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG 342 (396)
T ss_pred HHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 641 1245799999986632111 23445667889999999999766554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-09 Score=101.50 Aligned_cols=108 Identities=15% Similarity=0.118 Sum_probs=81.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHH--hhhc---CCCCCceEE
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKR--ALER---GYPDKSLLW 156 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~--~~~~---~~~~~~v~~ 156 (288)
+++.+|||+|||+|..+..++++- +..+++++|+++++++.++++ +... ...++++++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-----------------~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~v 358 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-----------------DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTV 358 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-----------------CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEE
Confidence 346799999999999999888752 237999999999999999983 2221 233468999
Q ss_pred EEcccccC-CCCCCCeeEEEeccccccccC-----HHHHHHHHHhhccCCcEEEEE
Q 036563 157 VEGDAEAL-CFEDSTMDGYTIAFGIRNVTH-----IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 157 ~~~d~~~~-~~~~~~~D~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+.+|+.+. ...+++||+|+++......+. ...+++.+++.|+|||.+++.
T Consensus 359 i~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 359 VNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred EEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 99998764 223468999999865333221 245889999999999999864
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-09 Score=106.56 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=83.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++++..+++...+++++.+|+.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G------------------a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~ 599 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG------------------AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL 599 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC------------------CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH
Confidence 36799999999999999998863 257999999999999999999888774347999999986
Q ss_pred cCC-CCCCCeeEEEecccccc-----------ccCHHHHHHHHHhhccCCcEEEEE
Q 036563 163 ALC-FEDSTMDGYTIAFGIRN-----------VTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~~-~~~~~~D~v~~~~~l~~-----------~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+.. ...++||+|+++..... ..+...++..+.++|+|||.+++.
T Consensus 600 ~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 600 AWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred HHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 531 12457999999764211 123456788899999999998864
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.7e-10 Score=92.56 Aligned_cols=153 Identities=25% Similarity=0.345 Sum_probs=110.1
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
+......+.+|||.|.|-|.+++..++.. ..+|+.++.+++.++.|.-+-=..++.+.++.+
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rG------------------A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~i 189 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALERG------------------AIHVITVEKDPNVLELAKLNPWSRELFEIAIKI 189 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHcC------------------CcEEEEEeeCCCeEEeeccCCCCccccccccEE
Confidence 34455678999999999999999999884 249999999999999887664444444457899
Q ss_pred EEcccccC--CCCCCCeeEEEeccc-cccccC--HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 157 VEGDAEAL--CFEDSTMDGYTIAFG-IRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 157 ~~~d~~~~--~~~~~~~D~v~~~~~-l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
+.+|+.+. .+.+++||.|+-... +.+..+ .+.+.++++|+|+|||.++--. ..|
T Consensus 190 ilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv-G~P-------------------- 248 (287)
T COG2521 190 ILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV-GNP-------------------- 248 (287)
T ss_pred ecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe-CCC--------------------
Confidence 99998775 588899999985332 111111 2678999999999999997311 111
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEE
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAI 282 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~ 282 (288)
...| +...-+..+...|+++||.+++......|+++.
T Consensus 249 -------g~ry-------rG~d~~~gVa~RLr~vGF~~v~~~~~~~gv~A~ 285 (287)
T COG2521 249 -------GKRY-------RGLDLPKGVAERLRRVGFEVVKKVREALGVVAV 285 (287)
T ss_pred -------Cccc-------ccCChhHHHHHHHHhcCceeeeeehhccceEEe
Confidence 0011 112235788899999999999988877777653
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.3e-09 Score=105.90 Aligned_cols=109 Identities=18% Similarity=0.265 Sum_probs=81.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC-------------
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP------------- 150 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------------- 150 (288)
+.+|||+|||+|.++..+++.. +..+++++|+|+.+++.|+++...+++.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-----------------~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~ 181 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-----------------LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKT 181 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCccccccccccccccc
Confidence 4589999999999999999986 4579999999999999999998765321
Q ss_pred -CCceEEEEcccccCCCC-CCCeeEEEeccccc--------------cc--------------------cC----HHHHH
Q 036563 151 -DKSLLWVEGDAEALCFE-DSTMDGYTIAFGIR--------------NV--------------------TH----IEKAL 190 (288)
Q Consensus 151 -~~~v~~~~~d~~~~~~~-~~~~D~v~~~~~l~--------------~~--------------------~~----~~~~l 190 (288)
..++.++.+|+.+.... ..+||+|++|...- +. .| ..+++
T Consensus 182 l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~ 261 (1082)
T PLN02672 182 LLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAV 261 (1082)
T ss_pred ccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHH
Confidence 13689999998654311 13699999976521 00 00 15577
Q ss_pred HHHHhhccCCcEEEEEeccC
Q 036563 191 AEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 191 ~~~~~~L~pgG~l~i~~~~~ 210 (288)
.++.++|+|||.++ .|...
T Consensus 262 ~~a~~~L~pgG~l~-lEiG~ 280 (1082)
T PLN02672 262 EEGISVIKPMGIMI-FNMGG 280 (1082)
T ss_pred HHHHHhccCCCEEE-EEECc
Confidence 88888999999887 44433
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.8e-09 Score=86.34 Aligned_cols=104 Identities=22% Similarity=0.298 Sum_probs=82.7
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC-
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL- 164 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~- 164 (288)
.+||||||.|.++..++... |+..++|+|+....+..+.+++...++ .|+.++++|+..+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-----------------Pd~n~iGiE~~~~~v~~a~~~~~~~~l--~Nv~~~~~da~~~l 80 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-----------------PDINFIGIEIRKKRVAKALRKAEKRGL--KNVRFLRGDARELL 80 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-----------------TTSEEEEEES-HHHHHHHHHHHHHHTT--SSEEEEES-CTTHH
T ss_pred eEEEecCCCCHHHHHHHHHC-----------------CCCCEEEEecchHHHHHHHHHHHhhcc--cceEEEEccHHHHH
Confidence 89999999999999999998 689999999999999999999888887 4999999998773
Q ss_pred --CCCCCCeeEEEeccccccccC--------HHHHHHHHHhhccCCcEEEEEec
Q 036563 165 --CFEDSTMDGYTIAFGIRNVTH--------IEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 165 --~~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
-++++++|.|++++.--+... -..++..+.++|+|||.+.+.+.
T Consensus 81 ~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 81 RRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp HHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred hhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 245678999998776433321 16689999999999999987653
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=89.94 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=87.5
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE-
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE- 158 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~- 158 (288)
....+++|||||.+.|..+.+++...+ .+++++.+|+++++.+.|++++...++. +++..+.
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~----------------~~g~l~tiE~~~e~~~~A~~n~~~ag~~-~~i~~~~~ 118 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALP----------------DDGRLTTIERDEERAEIARENLAEAGVD-DRIELLLG 118 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCC----------------CCCeEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEEec
Confidence 334568999999999999999999984 3689999999999999999999999998 6688888
Q ss_pred cccccC-C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 159 GDAEAL-C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 159 ~d~~~~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+|..+. . ...++||+|++...= .+...+++.+.++|+|||.+++
T Consensus 119 gdal~~l~~~~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 119 GDALDVLSRLLDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred CcHHHHHHhccCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEE
Confidence 476443 2 356789999975432 2457889999999999999986
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.6e-08 Score=88.05 Aligned_cols=125 Identities=13% Similarity=0.091 Sum_probs=86.2
Q ss_pred hhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 67 LHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 67 ~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
+.+.....+++.++ ++..|+|+|||+|.-+..+++.+.... ....|+++|+|.++++.+..++..
T Consensus 62 iL~~~~~~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~-------------~~~~Y~plDIS~~~L~~a~~~L~~ 126 (319)
T TIGR03439 62 ILKKHSSDIAASIP--SGSMLVELGSGNLRKVGILLEALERQK-------------KSVDYYALDVSRSELQRTLAELPL 126 (319)
T ss_pred HHHHHHHHHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcC-------------CCceEEEEECCHHHHHHHHHhhhh
Confidence 34455566777665 356899999999999888888763100 236799999999999999999873
Q ss_pred cCCCCCceEEEEcccccC----CC--CCCCeeEEEe-ccccccccC--HHHHHHHHHh-hccCCcEEEEE
Q 036563 147 RGYPDKSLLWVEGDAEAL----CF--EDSTMDGYTI-AFGIRNVTH--IEKALAEAYR-VLKRGGRFLCL 206 (288)
Q Consensus 147 ~~~~~~~v~~~~~d~~~~----~~--~~~~~D~v~~-~~~l~~~~~--~~~~l~~~~~-~L~pgG~l~i~ 206 (288)
..++.-.+.-+.+|..+. +- ......+++. ..++.+++. ...+|+++++ .|+|||.+++.
T Consensus 127 ~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 127 GNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred ccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 334312334477877553 11 1223455554 447777764 4578999999 99999999874
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.8e-09 Score=88.61 Aligned_cols=112 Identities=11% Similarity=-0.061 Sum_probs=86.8
Q ss_pred cCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc----------C
Q 036563 79 LNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER----------G 148 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~----------~ 148 (288)
+...++.+||+.|||.|..+..+++. +..|+|+|+|+..++.+.+..... .
T Consensus 39 l~~~~~~rvLvPgCGkg~D~~~LA~~-------------------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~ 99 (226)
T PRK13256 39 LNINDSSVCLIPMCGCSIDMLFFLSK-------------------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKL 99 (226)
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHhC-------------------CCcEEEEecCHHHHHHHHHHcCCCcceecccccce
Confidence 34445679999999999999999987 378999999999999876531100 0
Q ss_pred CCCCceEEEEcccccCCCC---CCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEecc
Q 036563 149 YPDKSLLWVEGDAEALCFE---DSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~---~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
....++.+.++|+.+++.. .+.||+|+-..++.+++. ..+..+.+.++|+|||.++++.+.
T Consensus 100 ~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 100 YKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred eccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 1114789999999887532 257999999888888863 467899999999999999986553
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.2e-09 Score=91.97 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=80.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC--CCCCceEEEEcc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG--YPDKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~v~~~~~d 160 (288)
.+.+||+||||+|..+..+++.. +..+++++|+++++++.+++.+...+ ...+++++..+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-----------------~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D 134 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-----------------SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDD 134 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-----------------CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECc
Confidence 34599999999999998888764 24789999999999999998775432 223578888888
Q ss_pred cccC-CCCCCCeeEEEecccccccc--C--HHHHHHHHHhhccCCcEEEEE
Q 036563 161 AEAL-CFEDSTMDGYTIAFGIRNVT--H--IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 161 ~~~~-~~~~~~~D~v~~~~~l~~~~--~--~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+... ....++||+|++.......+ + ...+++.+++.|+|||.+++.
T Consensus 135 ~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 135 GFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred hHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 7553 22246899999876532211 2 357889999999999999975
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.2e-09 Score=93.85 Aligned_cols=108 Identities=22% Similarity=0.245 Sum_probs=83.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~ 159 (288)
+++.+||+||||.|..+..++++- +..+++.+|+++.+++.+++.+... ++.+++++++.+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-----------------~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~ 152 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-----------------SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIG 152 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-----------------CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEC
Confidence 346799999999999999988763 3478999999999999999987643 234579999999
Q ss_pred ccccCC--CCCCCeeEEEeccccccccC----HHHHHHHHHhhccCCcEEEEE
Q 036563 160 DAEALC--FEDSTMDGYTIAFGIRNVTH----IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 160 d~~~~~--~~~~~~D~v~~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~ 206 (288)
|+...- .++++||+|++...-...+. ...+++.+++.|+|||.+++.
T Consensus 153 Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 153 DGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred hHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 976541 23567999998654322221 246899999999999999763
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-08 Score=90.25 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=64.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc-CCCCCceEEEE-cc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER-GYPDKSLLWVE-GD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~v~~~~-~d 160 (288)
++.++||||||+|.+...++... ++.+++++|+++.+++.|++++... ++. .++.+.. .|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-----------------~~~~~~atDId~~Al~~A~~Nv~~Np~l~-~~I~~~~~~~ 175 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-----------------YGWRFVGSDIDPQALASAQAIISANPGLN-GAIRLRLQKD 175 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-----------------CCCEEEEEeCCHHHHHHHHHHHHhccCCc-CcEEEEEccc
Confidence 45799999999998887777665 3589999999999999999999888 566 5777754 33
Q ss_pred cccC----CCCCCCeeEEEeccccccc
Q 036563 161 AEAL----CFEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 161 ~~~~----~~~~~~~D~v~~~~~l~~~ 183 (288)
...+ ..+.+.||+|+|+..++.-
T Consensus 176 ~~~i~~~i~~~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 176 SKAIFKGIIHKNERFDATLCNPPFHAS 202 (321)
T ss_pred hhhhhhcccccCCceEEEEeCCCCcCc
Confidence 3222 1245689999999987754
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5e-09 Score=92.69 Aligned_cols=116 Identities=16% Similarity=0.272 Sum_probs=90.2
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+.++..+.+.-...+++.|||+|||||.++...++.. ..+++++|.|. +.+.+.+.+..++
T Consensus 46 ~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAG------------------A~~V~aVe~S~-ia~~a~~iv~~N~ 106 (346)
T KOG1499|consen 46 LAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAG------------------ARKVYAVEASS-IADFARKIVKDNG 106 (346)
T ss_pred HHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhC------------------cceEEEEechH-HHHHHHHHHHhcC
Confidence 3444555555556678899999999999999999985 38999999755 5599999999988
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccc---cccccCHHHHHHHHHhhccCCcEEE
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFG---IRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~---l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
+. ..++++.+.++++.+|.++.|+|++-+. +-+-.-...+|-.--+.|+|||.++
T Consensus 107 ~~-~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 107 LE-DVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred cc-ceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 87 6789999999988777789999998553 2222234556666778999999876
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.9e-08 Score=78.09 Aligned_cols=133 Identities=15% Similarity=0.169 Sum_probs=99.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..-++|||||+|..+..+++..+ ++..+.++|++|.+++...+.+..++. ++..++.|+.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~----------------~~~~~latDiNp~A~~~Tl~TA~~n~~---~~~~V~tdl~~ 104 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG----------------PQALYLATDINPEALEATLETARCNRV---HIDVVRTDLLS 104 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC----------------CCceEEEecCCHHHHHHHHHHHHhcCC---ccceeehhHHh
Confidence 46799999999999999999875 678899999999999988888776653 57888888765
Q ss_pred CCCCCCCeeEEEecccccccc-----------------C----HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHH
Q 036563 164 LCFEDSTMDGYTIAFGIRNVT-----------------H----IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDY 222 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~~~-----------------~----~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~ 222 (288)
.- ..++.|+++.+...--.+ + .++++..+-.+|.|.|+++++....
T Consensus 105 ~l-~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~------------ 171 (209)
T KOG3191|consen 105 GL-RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA------------ 171 (209)
T ss_pred hh-ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh------------
Confidence 43 237899988876532111 0 2456777888899999999753211
Q ss_pred hhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCC
Q 036563 223 YSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGG 278 (288)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 278 (288)
..++++.+.++.-||.......-..|
T Consensus 172 ------------------------------N~p~ei~k~l~~~g~~~~~~~~Rk~~ 197 (209)
T KOG3191|consen 172 ------------------------------NKPKEILKILEKKGYGVRIAMQRKAG 197 (209)
T ss_pred ------------------------------cCHHHHHHHHhhcccceeEEEEEecC
Confidence 14678888999999987666544444
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.2e-09 Score=88.79 Aligned_cols=97 Identities=18% Similarity=0.309 Sum_probs=73.8
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+|||+|||+|.++..+++.... ++..+++++|+++.+++.++++. +++.+...|+..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~--------------~~~~~V~aVEID~~Al~~Ar~n~-------~~~~~~~~D~~~ 108 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMY--------------AKPREIVCVELNHTYYKLGKRIV-------PEATWINADALT 108 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhccc--------------CCCcEEEEEECCHHHHHHHHhhc-------cCCEEEEcchhc
Confidence 579999999999999998886410 02368999999999999999764 357899999876
Q ss_pred CCCCCCCeeEEEecccccccc--C----------HHHHHHHHHhhccCCcE
Q 036563 164 LCFEDSTMDGYTIAFGIRNVT--H----------IEKALAEAYRVLKRGGR 202 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~~~--~----------~~~~l~~~~~~L~pgG~ 202 (288)
..+ +++||+|++|..+.-.. + ...++..+.+++++|+.
T Consensus 109 ~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 109 TEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 554 45899999998865321 1 24578888886666665
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-08 Score=84.68 Aligned_cols=104 Identities=11% Similarity=0.054 Sum_probs=77.1
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..++... ..+++++|.++.+++.+++++...+.. ++.++.+|+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~------------------a~~V~~vE~~~~a~~~a~~Nl~~~~~~--~v~~~~~D~ 111 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY------------------AAGATLLEMDRAVAQQLIKNLATLKAG--NARVVNTNA 111 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC------------------CCEEEEEECCHHHHHHHHHHHHHhCCC--cEEEEEchH
Confidence 346799999999999998765553 268999999999999999998887763 799999998
Q ss_pred ccC-CCCCCCeeEEEeccccccccCHHHHHHHHHh--hccCCcEEEEE
Q 036563 162 EAL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYR--VLKRGGRFLCL 206 (288)
Q Consensus 162 ~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~--~L~pgG~l~i~ 206 (288)
... +....+||+|+++..+.. .-...+++.+.. +|+|++.+++.
T Consensus 112 ~~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 112 LSFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred HHHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 653 222346999999888532 123345555544 47888877753
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.95 E-value=3e-08 Score=81.72 Aligned_cols=129 Identities=22% Similarity=0.236 Sum_probs=86.0
Q ss_pred hhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 67 LHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 67 ~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
........|+......++..+||.-||+|.+....+........ .. +. ....++|.|+++.+++.+++++..
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~-~~------~~-~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPP-LN------DI-NELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTST-TT------H--CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCccc-cc------cc-ccccEEecCCCHHHHHHHHHHHHh
Confidence 33455566777777778889999999999999888776531000 00 00 012489999999999999999998
Q ss_pred cCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccC----H----HHHHHHHHhhccCCcEEE
Q 036563 147 RGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH----I----EKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 147 ~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~----~----~~~l~~~~~~L~pgG~l~ 204 (288)
.++. ..+.+.+.|+..+++.++++|.|+++.....-.. . ..+++++.++|++...++
T Consensus 84 ag~~-~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 84 AGVE-DYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp TT-C-GGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred cccC-CceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 8876 6789999999999877789999999887653211 1 346788889999844444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-08 Score=89.81 Aligned_cols=107 Identities=14% Similarity=0.141 Sum_probs=77.7
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+.+.+...++.+|||+|||+|.++..++.. ..+++++|+++.+++.++++....++ .++
T Consensus 165 v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-------------------~~~V~gvD~s~~av~~A~~n~~~~~l--~~v 223 (315)
T PRK03522 165 ARDWVRELPPRSMWDLFCGVGGFGLHCATP-------------------GMQLTGIEISAEAIACAKQSAAELGL--TNV 223 (315)
T ss_pred HHHHHHhcCCCEEEEccCCCCHHHHHHHhc-------------------CCEEEEEeCCHHHHHHHHHHHHHcCC--Cce
Confidence 334444345679999999999999999885 37999999999999999999988876 479
Q ss_pred EEEEcccccCCC-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 155 LWVEGDAEALCF-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 155 ~~~~~d~~~~~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+++.+|+.++.. ..+.||+|+++..-.. ....+.++...++|++.+++
T Consensus 224 ~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G---~~~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 224 QFQALDSTQFATAQGEVPDLVLVNPPRRG---IGKELCDYLSQMAPRFILYS 272 (315)
T ss_pred EEEEcCHHHHHHhcCCCCeEEEECCCCCC---ccHHHHHHHHHcCCCeEEEE
Confidence 999999977532 2347999998865222 22223233344677766664
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.9e-08 Score=82.57 Aligned_cols=104 Identities=21% Similarity=0.186 Sum_probs=87.9
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
..+||||||.|.+...+++.. |...+.|+|+....+..+.+++.+.+++ |+.+++.|+..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-----------------P~~nfiGiEi~~~~v~~~l~k~~~~~l~--Nlri~~~DA~~~ 110 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-----------------PEKNFLGIEIRVPGVAKALKKIKELGLK--NLRLLCGDAVEV 110 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-----------------CCCCEEEEEEehHHHHHHHHHHHHcCCC--cEEEEcCCHHHH
Confidence 479999999999999999998 6899999999999999999999998874 899999998775
Q ss_pred ---CCCCCCeeEEEeccccccccC--------HHHHHHHHHhhccCCcEEEEEe
Q 036563 165 ---CFEDSTMDGYTIAFGIRNVTH--------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 165 ---~~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
-+++++.|-|.+++.--+... -..+++.+.+.|+|||.|.+.+
T Consensus 111 l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 111 LDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred HHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 234559999998887444332 1568999999999999999754
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.9e-08 Score=93.05 Aligned_cols=109 Identities=14% Similarity=0.167 Sum_probs=82.1
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.+.+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...++ .
T Consensus 282 ~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-------------------~~V~~vE~~~~av~~a~~n~~~~~~--~ 340 (431)
T TIGR00479 282 DRALEALELQGEELVVDAYCGVGTFTLPLAKQA-------------------KSVVGIEVVPESVEKAQQNAELNGI--A 340 (431)
T ss_pred HHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-------------------CEEEEEEcCHHHHHHHHHHHHHhCC--C
Confidence 445556666667899999999999999988764 6899999999999999999888776 4
Q ss_pred ceEEEEcccccC----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 153 SLLWVEGDAEAL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 153 ~v~~~~~d~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+++++.+|+.+. ...+.+||+|++...-... ...+++.+.+ ++|++.+++
T Consensus 341 nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~--~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 341 NVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGC--AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred ceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCC--CHHHHHHHHh-cCCCEEEEE
Confidence 899999998653 1234579999976652211 2455665554 788886664
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.4e-08 Score=79.59 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=66.7
Q ss_pred cCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 79 LNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
...-.+..|+|+|||||.++..++-.. -.+|+++|+++++++.++++..+.. .++.++.
T Consensus 41 ~g~l~g~~V~DlG~GTG~La~ga~~lG------------------a~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~ 99 (198)
T COG2263 41 RGDLEGKTVLDLGAGTGILAIGAALLG------------------ASRVLAVDIDPEALEIARANAEELL---GDVEFVV 99 (198)
T ss_pred cCCcCCCEEEEcCCCcCHHHHHHHhcC------------------CcEEEEEecCHHHHHHHHHHHHhhC---CceEEEE
Confidence 344456689999999999998887774 3899999999999999999998743 5799999
Q ss_pred cccccCCCCCCCeeEEEeccccccc
Q 036563 159 GDAEALCFEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 159 ~d~~~~~~~~~~~D~v~~~~~l~~~ 183 (288)
.|+..+. ..+|.+++|..+...
T Consensus 100 ~dv~~~~---~~~dtvimNPPFG~~ 121 (198)
T COG2263 100 ADVSDFR---GKFDTVIMNPPFGSQ 121 (198)
T ss_pred cchhhcC---CccceEEECCCCccc
Confidence 9998764 468999998876543
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-08 Score=81.96 Aligned_cols=110 Identities=19% Similarity=0.178 Sum_probs=74.0
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC-CCCCceEEEEc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG-YPDKSLLWVEG 159 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~v~~~~~ 159 (288)
..++.+|||+|||+|..+..++... ...+|+..|.++ .++..+.++..++ ....++.+...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-----------------~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L 104 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-----------------GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPL 104 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT------------------T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE-
T ss_pred hcCCceEEEECCccchhHHHHHhcc-----------------CCceEEEeccch-hhHHHHHHHHhccccccccccCcEE
Confidence 3457899999999999999998884 248999999988 8888888887654 11256777777
Q ss_pred ccccC----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 160 DAEAL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 160 d~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
|..+. .....+||+|+++.+++.......+++.+.++|+++|.+++...
T Consensus 105 ~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 105 DWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp -TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 65431 12345799999999999877788899999999999998776543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=88.39 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=84.9
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
+..+|||||+++|..+.+++...+ +.++++.+|.+++..+.|++.+...++. ++++++.+|+.
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~----------------~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-~~I~~~~G~a~ 141 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALP----------------EDGKILAMDINRENYELGLPVIQKAGVA-HKIDFREGPAL 141 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCC----------------CCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEEeccHH
Confidence 356899999999999999998764 5689999999999999999999999987 89999999986
Q ss_pred cC-C-C-----CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 163 AL-C-F-----EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 163 ~~-~-~-----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+. + + ..++||+|++...= ......++.+.++|+|||.+++
T Consensus 142 e~L~~l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 142 PVLDQMIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHHHHHHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEE
Confidence 53 2 1 12589999976541 2346678888999999999875
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.5e-08 Score=84.07 Aligned_cols=112 Identities=15% Similarity=0.264 Sum_probs=85.2
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
+.+.+.+.-....+..|||+|||+|.++...++.. ..+|++++. .+|.+.|++....+++.
T Consensus 165 Y~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAG------------------A~~vYAvEA-S~MAqyA~~Lv~~N~~~ 225 (517)
T KOG1500|consen 165 YQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAG------------------AKKVYAVEA-SEMAQYARKLVASNNLA 225 (517)
T ss_pred HHHHHHhcccccCCcEEEEecCCccHHHHHHHHhC------------------cceEEEEeh-hHHHHHHHHHHhcCCcc
Confidence 33556666556677889999999999999888874 389999996 56999999999888777
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccc--c-CHHHHHHHHHhhccCCcEEE
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV--T-HIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~--~-~~~~~l~~~~~~L~pgG~l~ 204 (288)
.++.++.+.++++.+| ++.|++++-.. ..+ + ......-..++.|+|.|..+
T Consensus 226 -~rItVI~GKiEdieLP-Ek~DviISEPM-G~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 226 -DRITVIPGKIEDIELP-EKVDVIISEPM-GYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred -ceEEEccCccccccCc-hhccEEEeccc-hhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 8999999999988766 47999986432 111 1 12223335679999999876
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-08 Score=88.41 Aligned_cols=120 Identities=24% Similarity=0.215 Sum_probs=98.2
Q ss_pred hhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh
Q 036563 66 GLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL 145 (288)
Q Consensus 66 ~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 145 (288)
....+..+.++......+|..|||.=||||.++..+.-. +++++|.|++..|+.-++.++.
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~-------------------G~~viG~Did~~mv~gak~Nl~ 240 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM-------------------GARVIGSDIDERMVRGAKINLE 240 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc-------------------CceEeecchHHHHHhhhhhhhh
Confidence 344567788888888899999999999999999877655 4899999999999999999999
Q ss_pred hcCCCCCceEEEEc-ccccCCCCCCCeeEEEecccccccc-----C----HHHHHHHHHhhccCCcEEEEE
Q 036563 146 ERGYPDKSLLWVEG-DAEALCFEDSTMDGYTIAFGIRNVT-----H----IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 146 ~~~~~~~~v~~~~~-d~~~~~~~~~~~D~v~~~~~l~~~~-----~----~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..++. ...+... |+.++++++.++|.|++.....-.. . ..++|+.+.++|++||++++.
T Consensus 241 ~y~i~--~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 241 YYGIE--DYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred hhCcC--ceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 88764 5555555 9999998888899999876643221 1 367899999999999999863
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.8e-08 Score=82.07 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=74.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC-----------
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD----------- 151 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~----------- 151 (288)
.+..+|||||.+|.++..+++.++ ...+.|+||++..++.|++.++-..-..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~-----------------~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~ 120 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFG-----------------PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASF 120 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhc-----------------cceeeEeeccHHHHHHHHHhccccccccccccCCCcccc
Confidence 356899999999999999999985 4679999999999999998764321000
Q ss_pred ----------------------CceEE-------EEcccccCCCCCCCeeEEEeccccccc------cCHHHHHHHHHhh
Q 036563 152 ----------------------KSLLW-------VEGDAEALCFEDSTMDGYTIAFGIRNV------THIEKALAEAYRV 196 (288)
Q Consensus 152 ----------------------~~v~~-------~~~d~~~~~~~~~~~D~v~~~~~l~~~------~~~~~~l~~~~~~ 196 (288)
.++.+ ...|+. .+....||+|+|..+-.++ +....+++++.++
T Consensus 121 ~~~~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~l 198 (288)
T KOG2899|consen 121 GVQFGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSL 198 (288)
T ss_pred ccccccccccccccccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHh
Confidence 01111 111111 1334579999997663222 2468899999999
Q ss_pred ccCCcEEEE
Q 036563 197 LKRGGRFLC 205 (288)
Q Consensus 197 L~pgG~l~i 205 (288)
|.|||.|++
T Consensus 199 l~pgGiLvv 207 (288)
T KOG2899|consen 199 LHPGGILVV 207 (288)
T ss_pred hCcCcEEEE
Confidence 999999985
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=87.49 Aligned_cols=90 Identities=14% Similarity=0.261 Sum_probs=74.5
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
++.+.+.+++.+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-------------------~~v~~vEid~~~~~~l~~~~~~~ 74 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-------------------KKVYAIELDPRLAEFLRDDEIAA 74 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-------------------CEEEEEECCHHHHHHHHHHhccC
Confidence 34556777788877778899999999999999999873 68999999999999999877542
Q ss_pred CCCCCceEEEEcccccCCCCCCCeeEEEecccccc
Q 036563 148 GYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN 182 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 182 (288)
+++.++.+|+.+++++ .+|.|+++...+.
T Consensus 75 ----~~v~ii~~D~~~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 75 ----GNVEIIEGDALKVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred ----CCEEEEEeccccCCch--hceEEEEcCCccc
Confidence 5899999999887655 4899999877543
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-07 Score=77.11 Aligned_cols=97 Identities=23% Similarity=0.240 Sum_probs=81.0
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+++|||+|.|..+..++-.. |..+++.+|.+..-....+......+++ |++++...+++ .
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-----------------p~~~~~LvEs~~KK~~FL~~~~~~L~L~--nv~v~~~R~E~-~ 110 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-----------------PDLQVTLVESVGKKVAFLKEVVRELGLS--NVEVINGRAEE-P 110 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH------------------TTSEEEEEESSHHHHHHHHHHHHHHT-S--SEEEEES-HHH-T
T ss_pred eEEecCCCCCChhHHHHHhC-----------------CCCcEEEEeCCchHHHHHHHHHHHhCCC--CEEEEEeeecc-c
Confidence 89999999999999998887 5789999999999988888888888884 89999999988 4
Q ss_pred CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 166 FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 166 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.....||+|++..+ .....++.-+.+++++||.+++.
T Consensus 111 ~~~~~fd~v~aRAv----~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 111 EYRESFDVVTARAV----APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp TTTT-EEEEEEESS----SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred ccCCCccEEEeehh----cCHHHHHHHHHHhcCCCCEEEEE
Confidence 45568999998655 56788999999999999999863
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.3e-08 Score=86.92 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=102.0
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
...+|+|.|.|..+..++..+ .++-+++++...+-.+..... . .+..+-+|+.+-
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f-------------------p~ik~infdlp~v~~~a~~~~-~-----gV~~v~gdmfq~ 233 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY-------------------PHIKGINFDLPFVLAAAPYLA-P-----GVEHVAGDMFQD 233 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC-------------------CCCceeecCHHHHHhhhhhhc-C-----Ccceeccccccc
Confidence 579999999999999999965 457777777776665555442 2 377788887655
Q ss_pred CCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcch
Q 036563 165 CFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSY 242 (288)
Q Consensus 165 ~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (288)
.|. -|+|++.+++||++| ..++|++|+..|+|+|.+++.|...|.............+.. ..+........
T Consensus 234 -~P~--~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~-d~lm~~~~~~G--- 306 (342)
T KOG3178|consen 234 -TPK--GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDM-DLLMLTQTSGG--- 306 (342)
T ss_pred -CCC--cCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehh-HHHHHHHhccc---
Confidence 343 579999999999985 578999999999999999999997764221111000000000 00000000000
Q ss_pred hhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 243 QYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
.-.+.++++.++.++||.+..+.-..
T Consensus 307 --------kert~~e~q~l~~~~gF~~~~~~~~~ 332 (342)
T KOG3178|consen 307 --------KERTLKEFQALLPEEGFPVCMVALTA 332 (342)
T ss_pred --------eeccHHHHHhcchhhcCceeEEEecc
Confidence 01268999999999999988876543
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-07 Score=81.03 Aligned_cols=120 Identities=15% Similarity=0.167 Sum_probs=87.4
Q ss_pred HHHHHHHHhhcCC---CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh
Q 036563 69 RLWKDRLVSKLNP---FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL 145 (288)
Q Consensus 69 ~~~~~~~~~~l~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 145 (288)
+.|-+.+++.+.. ..+..|||+|||+|.++..++... +.+.++++|.|+.++..|.+++.
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-----------------~~~~v~AiD~S~~Ai~La~eN~q 193 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-----------------PQCTVTAIDVSKAAIKLAKENAQ 193 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-----------------CCceEEEEeccHHHHHHHHHHHH
Confidence 3444444444432 345589999999999999999988 57999999999999999999998
Q ss_pred hcCCCCCceEEEEcccccC-----CCCCCCeeEEEeccccccccCH--------------------------HHHHHHHH
Q 036563 146 ERGYPDKSLLWVEGDAEAL-----CFEDSTMDGYTIAFGIRNVTHI--------------------------EKALAEAY 194 (288)
Q Consensus 146 ~~~~~~~~v~~~~~d~~~~-----~~~~~~~D~v~~~~~l~~~~~~--------------------------~~~l~~~~ 194 (288)
...+. +++..+..+++.- +...+++|++++|...-.-+|. ..++.-+.
T Consensus 194 r~~l~-g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~ 272 (328)
T KOG2904|consen 194 RLKLS-GRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLAT 272 (328)
T ss_pred HHhhc-CceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhH
Confidence 88777 7787776554432 3456789999998763211111 22456677
Q ss_pred hhccCCcEEEEE
Q 036563 195 RVLKRGGRFLCL 206 (288)
Q Consensus 195 ~~L~pgG~l~i~ 206 (288)
|.|+|||.+.+-
T Consensus 273 R~Lq~gg~~~le 284 (328)
T KOG2904|consen 273 RMLQPGGFEQLE 284 (328)
T ss_pred hhcccCCeEEEE
Confidence 999999998864
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8e-08 Score=89.84 Aligned_cols=106 Identities=21% Similarity=0.295 Sum_probs=76.4
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+..|+|+|||+|.++...++.....+ ...+|+++|-|+.+....++++...++. ++|+++.+|+++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~-------------~a~~VyAVEkn~~A~~~l~~~v~~n~w~-~~V~vi~~d~r~ 252 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAG-------------GAVKVYAVEKNPNAVVTLQKRVNANGWG-DKVTVIHGDMRE 252 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHC-------------CESEEEEEESSTHHHHHHHHHHHHTTTT-TTEEEEES-TTT
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhC-------------CCeEEEEEcCCHhHHHHHHHHHHhcCCC-CeEEEEeCcccC
Confidence 56799999999999988777642100 1369999999999888877776777776 789999999999
Q ss_pred CCCCCCCeeEEEeccc--cccccCHHHHHHHHHhhccCCcEEE
Q 036563 164 LCFEDSTMDGYTIAFG--IRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~--l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
...+. ++|+|++=.. +-.-+-....|....+.|||||.++
T Consensus 253 v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 253 VELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp SCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred CCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 87654 8999997222 2111234567888999999999876
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-08 Score=83.59 Aligned_cols=116 Identities=17% Similarity=0.162 Sum_probs=70.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc---------------
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--------------- 147 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--------------- 147 (288)
+..+|+..||+||.-.-.++-.+... .....+-..+++|+|+|+.+++.|++..-..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~--------~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf 102 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLEL--------LPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYF 102 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHH--------H-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHE
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHH--------hcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhc
Confidence 56799999999997443333322110 0001112479999999999999998742100
Q ss_pred ------CCC-----CCceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEE
Q 036563 148 ------GYP-----DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 148 ------~~~-----~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~ 206 (288)
.+. ..+|.|...|+.+.+.+.+.||+|+|.+++-+++.. .++++.+++.|+|||+|++.
T Consensus 103 ~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 103 TERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp EEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred cccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 000 156888888887743445689999999999998753 67999999999999999963
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9e-08 Score=76.04 Aligned_cols=117 Identities=17% Similarity=0.235 Sum_probs=96.5
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
...+.|...+....+.-|||+|.|||-++..++.+.- +...++.++.|++......+..
T Consensus 35 ~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv----------------~~~~L~~iE~~~dF~~~L~~~~----- 93 (194)
T COG3963 35 ILARKMASVIDPESGLPVLELGPGTGVITKAILSRGV----------------RPESLTAIEYSPDFVCHLNQLY----- 93 (194)
T ss_pred HHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCC----------------CccceEEEEeCHHHHHHHHHhC-----
Confidence 3456777888888888999999999999999999853 5688999999999998887775
Q ss_pred CCCceEEEEcccccCC-----CCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEecc
Q 036563 150 PDKSLLWVEGDAEALC-----FEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+.+.++.+|+..+. ..+..||.|++...+..++- ..+.|+.+...|..||.++-...+
T Consensus 94 --p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 94 --PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred --CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 46778999987763 45567999999998887763 356899999999999999976665
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.8e-07 Score=77.33 Aligned_cols=110 Identities=19% Similarity=0.244 Sum_probs=95.1
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+..++...|+.+|+|-|.|+|.++.+++..++ |.++++.+|+.....+.|.+.+.+.+++ .
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~----------------ptGhl~tfefH~~Ra~ka~eeFr~hgi~-~ 157 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVA----------------PTGHLYTFEFHETRAEKALEEFREHGIG-D 157 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhC----------------cCcceEEEEecHHHHHHHHHHHHHhCCC-c
Confidence 4577888999999999999999999999999987 7899999999999999999999999988 8
Q ss_pred ceEEEEcccccCCCC--CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEE
Q 036563 153 SLLWVEGDAEALCFE--DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~--~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
++.+..-|+....|. +..+|.|++ .++.+..++..+..+||.+|.-+
T Consensus 158 ~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~ 206 (314)
T KOG2915|consen 158 NVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRL 206 (314)
T ss_pred ceEEEEeecccCCccccccccceEEE-----cCCChhhhhhhhHHHhhhcCceE
Confidence 999999999876544 457898875 45678888999999999877544
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.4e-08 Score=86.89 Aligned_cols=91 Identities=25% Similarity=0.324 Sum_probs=74.1
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..+.+.+++.+...++.+|||||||+|.++..+++.. .+++++|+++.+++.+++++...+
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-------------------~~V~avEiD~~li~~l~~~~~~~~ 82 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-------------------KKVIAIEIDPRMVAELKKRFQNSP 82 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-------------------CcEEEEECCHHHHHHHHHHHHhcC
Confidence 3455677777777788899999999999999998863 689999999999999999887654
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccc
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIR 181 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~ 181 (288)
.. ++++++.+|+...+++ .+|.|+++...+
T Consensus 83 ~~-~~v~ii~~Dal~~~~~--~~d~VvaNlPY~ 112 (294)
T PTZ00338 83 LA-SKLEVIEGDALKTEFP--YFDVCVANVPYQ 112 (294)
T ss_pred CC-CcEEEEECCHhhhccc--ccCEEEecCCcc
Confidence 33 5899999999876543 589998876654
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.3e-08 Score=87.00 Aligned_cols=88 Identities=18% Similarity=0.284 Sum_probs=70.2
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
....+.+++.+...++.+|||+|||+|.++..+++.. .+++++|+++.|++.++++...
T Consensus 28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-------------------~~v~avE~d~~~~~~~~~~~~~-- 86 (272)
T PRK00274 28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA-------------------AKVTAVEIDRDLAPILAETFAE-- 86 (272)
T ss_pred HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC-------------------CcEEEEECCHHHHHHHHHhhcc--
Confidence 3445667777777778899999999999999999884 5899999999999999876532
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEecccc
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGI 180 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l 180 (288)
++++++.+|+.+.++++-.+|.|+++...
T Consensus 87 ---~~v~~i~~D~~~~~~~~~~~~~vv~NlPY 115 (272)
T PRK00274 87 ---DNLTIIEGDALKVDLSELQPLKVVANLPY 115 (272)
T ss_pred ---CceEEEEChhhcCCHHHcCcceEEEeCCc
Confidence 47999999998876553225888887664
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.2e-08 Score=88.08 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=89.9
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+||++-|=||.++.+++... ..+++.+|.|...++.+++++.-++++..+..|+++|+.+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG------------------A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~ 279 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG------------------ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK 279 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC------------------CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH
Confidence 7899999999999999998874 2499999999999999999999999876778999999876
Q ss_pred C----CCCCCCeeEEEeccc-cc--------cccCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 164 L----CFEDSTMDGYTIAFG-IR--------NVTHIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 164 ~----~~~~~~~D~v~~~~~-l~--------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
. .-...+||+|++... +. ...+...++..+.++|+|||.+++...+..
T Consensus 280 ~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 280 WLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred HHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 5 233458999998654 11 112346689999999999999998776654
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.2e-08 Score=87.16 Aligned_cols=114 Identities=14% Similarity=0.164 Sum_probs=79.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh-----------------
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE----------------- 146 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~----------------- 146 (288)
..+|+..||+||.-.-.++-...... +......+|+|+|+|+.+++.|++..-.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~---------~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~ 186 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTL---------GTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFM 186 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhh---------cccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcc
Confidence 47999999999974433333221000 0000146899999999999999876211
Q ss_pred ------cC---CC---CCceEEEEcccccCCCC-CCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEE
Q 036563 147 ------RG---YP---DKSLLWVEGDAEALCFE-DSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 147 ------~~---~~---~~~v~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.+ +. ...|.|...|+...+++ .+.||+|+|.+++.+++. ..++++++.+.|+|||+|++.
T Consensus 187 ~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 187 RGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred cccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 00 00 14577888887764433 568999999999998864 577999999999999998863
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-07 Score=82.12 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=70.3
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..+.+.+++.+...++.+|||+|||+|.++..+++.. ..++++|+++.+++.++......
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-------------------~~v~~iE~d~~~~~~l~~~~~~~- 74 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-------------------KKVTAIEIDPRLAEILRKLLSLY- 74 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-------------------CcEEEEECCHHHHHHHHHHhCcC-
Confidence 4455677777777778899999999999999999885 46999999999999998776432
Q ss_pred CCCCceEEEEcccccCCCCCCCee---EEEeccccc
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMD---GYTIAFGIR 181 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D---~v~~~~~l~ 181 (288)
+++.++.+|+...+++ .+| +|+++..++
T Consensus 75 ---~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 75 ---ERLEVIEGDALKVDLP--DFPKQLKVVSNLPYN 105 (253)
T ss_pred ---CcEEEEECchhcCChh--HcCCcceEEEcCChh
Confidence 5899999999887654 366 777766543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.6e-06 Score=74.14 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=98.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--------------
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER-------------- 147 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------------- 147 (288)
..+.+||-.|||.|+++..++... ..+.+.|.|--|+-...-.+...
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G-------------------~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLG-------------------YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhcc-------------------ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceec
Confidence 345799999999999999999873 78999999998875544322210
Q ss_pred --------------CCC----------CCceEEEEcccccCCCCC---CCeeEEEeccccccccCHHHHHHHHHhhccCC
Q 036563 148 --------------GYP----------DKSLLWVEGDAEALCFED---STMDGYTIAFGIRNVTHIEKALAEAYRVLKRG 200 (288)
Q Consensus 148 --------------~~~----------~~~v~~~~~d~~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg 200 (288)
..+ ..++....||+...-.++ ++||+|+..+-+.-..+....|+.+.++||||
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPG 195 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccC
Confidence 000 134566667766653333 68999998877766678889999999999999
Q ss_pred cEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 201 GRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 201 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
|..+-...-. . ...+. + .....+- -++.+++..+.++.||+++..+.
T Consensus 196 G~WIN~GPLl--y------------h~~~~-~---~~~~~sv---------eLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 196 GYWINFGPLL--Y------------HFEPM-S---IPNEMSV---------ELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CEEEecCCcc--c------------cCCCC-C---CCCCccc---------CCCHHHHHHHHHHCCCEEEEEEE
Confidence 9877321100 0 00000 0 0000000 13789999999999999988766
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-07 Score=87.80 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=92.3
Q ss_pred Hhhc--CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 76 VSKL--NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 76 ~~~l--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
+..+ ...++.+|||+|||+|.-+.++++.++ +.+.+++.|+++..++..++++...++. +
T Consensus 104 ~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~----------------~~g~lvA~D~~~~R~~~L~~nl~r~G~~--n 165 (470)
T PRK11933 104 VAALFADDNAPQRVLDMAAAPGSKTTQIAALMN----------------NQGAIVANEYSASRVKVLHANISRCGVS--N 165 (470)
T ss_pred HHHhccCCCCCCEEEEeCCCccHHHHHHHHHcC----------------CCCEEEEEeCCHHHHHHHHHHHHHcCCC--e
Confidence 4445 667899999999999999999999875 4579999999999999999999998884 7
Q ss_pred eEEEEcccccCC-CCCCCeeEEEeccccc------cccCH----------------HHHHHHHHhhccCCcEEEEEeccC
Q 036563 154 LLWVEGDAEALC-FEDSTMDGYTIAFGIR------NVTHI----------------EKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 154 v~~~~~d~~~~~-~~~~~~D~v~~~~~l~------~~~~~----------------~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+.+...|...+. ...+.||.|++..... .-++. .++|.++.+.|||||.++...++.
T Consensus 166 v~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 166 VALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred EEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 888888887653 2235799999644322 11111 457999999999999998776664
Q ss_pred C
Q 036563 211 V 211 (288)
Q Consensus 211 ~ 211 (288)
.
T Consensus 246 ~ 246 (470)
T PRK11933 246 N 246 (470)
T ss_pred C
Confidence 3
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-07 Score=80.58 Aligned_cols=111 Identities=18% Similarity=0.156 Sum_probs=78.9
Q ss_pred CCeEEEecCCccH----HHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh-----cCCC----
Q 036563 84 GMKHLDVAGGTGD----VAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE-----RGYP---- 150 (288)
Q Consensus 84 ~~~vLDiG~G~G~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-----~~~~---- 150 (288)
..+|+-.||+||. ++..+.+..+. ..+...+|+++|+|..+++.|+...-. .+++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~------------~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~ 164 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGK------------LAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELL 164 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhcc------------ccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHH
Confidence 5799999999996 44444444320 111358999999999999999775332 1111
Q ss_pred ------------------CCceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEE
Q 036563 151 ------------------DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 151 ------------------~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~ 206 (288)
...|.|...|+...++..+.||+|+|.+++-+++.. .++++.++..|+|||+|++.
T Consensus 165 ~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 165 RRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred hhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 134556666655444344579999999999988754 67999999999999999973
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-07 Score=82.33 Aligned_cols=123 Identities=19% Similarity=0.171 Sum_probs=85.8
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
++..++.+.+.. .+.+|||+-|=||.++.+++... ..+++.+|.|..+++.+++++.-+
T Consensus 111 qR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gG------------------A~~v~~VD~S~~al~~a~~N~~lN 169 (286)
T PF10672_consen 111 QRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGG------------------AKEVVSVDSSKRALEWAKENAALN 169 (286)
T ss_dssp GHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHHTT------------------ESEEEEEES-HHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHHCC------------------CCEEEEEeCCHHHHHHHHHHHHHc
Confidence 344444454443 36799999999999999887653 258999999999999999999988
Q ss_pred CCCCCceEEEEcccccC-C--CCCCCeeEEEeccc-cc-----cccCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 148 GYPDKSLLWVEGDAEAL-C--FEDSTMDGYTIAFG-IR-----NVTHIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~-~--~~~~~~D~v~~~~~-l~-----~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
+++..+++++..|+.+. . -..++||+|++... +. -..+..+++..+.++|+|||.+++...++.
T Consensus 170 g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 170 GLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp T-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred CCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 87656889999998653 1 12458999999654 11 112346688899999999999987766554
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.2e-07 Score=84.32 Aligned_cols=105 Identities=11% Similarity=0.089 Sum_probs=78.2
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
..+...++.+|||++||+|.++..++.. ..+++++|+++.+++.++++....++. ++++
T Consensus 227 ~~l~~~~~~~vLDL~cG~G~~~l~la~~-------------------~~~v~~vE~~~~av~~a~~N~~~~~~~--~~~~ 285 (374)
T TIGR02085 227 QWVREIPVTQMWDLFCGVGGFGLHCAGP-------------------DTQLTGIEIESEAIACAQQSAQMLGLD--NLSF 285 (374)
T ss_pred HHHHhcCCCEEEEccCCccHHHHHHhhc-------------------CCeEEEEECCHHHHHHHHHHHHHcCCC--cEEE
Confidence 3443344579999999999999988864 378999999999999999999887763 7999
Q ss_pred EEcccccCCC-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 157 VEGDAEALCF-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 157 ~~~d~~~~~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
..+|+.+... ...+||+|+++..-... ...+++.+. .++|++.+++
T Consensus 286 ~~~d~~~~~~~~~~~~D~vi~DPPr~G~--~~~~l~~l~-~~~p~~ivyv 332 (374)
T TIGR02085 286 AALDSAKFATAQMSAPELVLVNPPRRGI--GKELCDYLS-QMAPKFILYS 332 (374)
T ss_pred EECCHHHHHHhcCCCCCEEEECCCCCCC--cHHHHHHHH-hcCCCeEEEE
Confidence 9999876421 12459999998764322 234555554 4688887775
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.9e-07 Score=79.06 Aligned_cols=121 Identities=14% Similarity=0.139 Sum_probs=80.2
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
.++...++...+.+|||+|||+|..+..+.+..+ ...+++++|.|+.|++.++......... .
T Consensus 23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~----------------~~~~~~~vd~s~~~~~l~~~l~~~~~~~-~ 85 (274)
T PF09243_consen 23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWP----------------SLKEYTCVDRSPEMLELAKRLLRAGPNN-R 85 (274)
T ss_pred HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhc----------------CceeeeeecCCHHHHHHHHHHHhccccc-c
Confidence 3455555555667999999999987777766653 2368999999999999998876544211 1
Q ss_pred ceEEEEccccc-CCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCChH
Q 036563 153 SLLWVEGDAEA-LCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIP 214 (288)
Q Consensus 153 ~v~~~~~d~~~-~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 214 (288)
...+......+ .++ ...|+|+++++|..+++ ...+++.+.+.+.+ .++++|...+...
T Consensus 86 ~~~~~~~~~~~~~~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf 146 (274)
T PF09243_consen 86 NAEWRRVLYRDFLPF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF 146 (274)
T ss_pred cchhhhhhhcccccC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH
Confidence 11111111111 122 23499999999988876 34466677666655 8999998887443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.1e-07 Score=75.65 Aligned_cols=103 Identities=13% Similarity=0.011 Sum_probs=76.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.++||++||+|.++..++.+.. ..++++|.++.+++.+++++...+.. .+++++.+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga------------------~~v~~vE~~~~a~~~~~~N~~~~~~~-~~~~~~~~D~~ 109 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA------------------KVAFLEEDDRKANQTLKENLALLKSG-EQAEVVRNSAL 109 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC------------------CEEEEEeCCHHHHHHHHHHHHHhCCc-ccEEEEehhHH
Confidence 467999999999999999998852 58999999999999999998887765 57899999985
Q ss_pred cC-C-C--CCCCeeEEEeccccccccCHHHHHHHHH--hhccCCcEEEE
Q 036563 163 AL-C-F--EDSTMDGYTIAFGIRNVTHIEKALAEAY--RVLKRGGRFLC 205 (288)
Q Consensus 163 ~~-~-~--~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i 205 (288)
.. . . ....+|+|+....+.. ......+..+. .+|+++|.+++
T Consensus 110 ~~l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 110 RALKFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVV 157 (189)
T ss_pred HHHHHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEE
Confidence 43 1 1 1224788888776543 23344454443 46788887664
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.69 E-value=8e-08 Score=79.40 Aligned_cols=117 Identities=18% Similarity=0.241 Sum_probs=83.3
Q ss_pred HHHHHHHhhcCC--CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 70 LWKDRLVSKLNP--FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 70 ~~~~~~~~~l~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
+.++.+...+.. -.+.++||+-||||.++..++.+. ..+++.+|.++..+...++++...
T Consensus 27 rvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG------------------A~~v~fVE~~~~a~~~i~~N~~~l 88 (183)
T PF03602_consen 27 RVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG------------------AKSVVFVEKNRKAIKIIKKNLEKL 88 (183)
T ss_dssp HHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-------------------SEEEEEES-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC------------------CCeEEEEECCHHHHHHHHHHHHHh
Confidence 444555555543 367899999999999999988885 379999999999999999999888
Q ss_pred CCCCCceEEEEcccccC----CCCCCCeeEEEeccccccccCHHHHHHHHH--hhccCCcEEEE
Q 036563 148 GYPDKSLLWVEGDAEAL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAY--RVLKRGGRFLC 205 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i 205 (288)
+.. .++.++..|+... .....+||+|++............++..+. .+|+++|.+++
T Consensus 89 ~~~-~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 89 GLE-DKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp T-G-GGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred CCC-cceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEE
Confidence 776 4688888886443 124578999999887654322366777776 89999998875
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-07 Score=77.25 Aligned_cols=106 Identities=23% Similarity=0.347 Sum_probs=77.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.+.+ .++.+|+|+.||-|.++..++... +...|+++|++|...+..++++..+++. .
T Consensus 93 ~Ri~~~v--~~~e~VlD~faGIG~f~l~~ak~~-----------------~~~~V~A~d~Np~a~~~L~~Ni~lNkv~-~ 152 (200)
T PF02475_consen 93 RRIANLV--KPGEVVLDMFAGIGPFSLPIAKHG-----------------KAKRVYAVDLNPDAVEYLKENIRLNKVE-N 152 (200)
T ss_dssp HHHHTC----TT-EEEETT-TTTTTHHHHHHHT------------------SSEEEEEES-HHHHHHHHHHHHHTT-T-T
T ss_pred HHHHhcC--CcceEEEEccCCccHHHHHHhhhc-----------------CccEEEEecCCHHHHHHHHHHHHHcCCC-C
Confidence 3454443 457899999999999999999854 3578999999999999999999999887 7
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEE
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRF 203 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 203 (288)
++..+.+|+..+.. ...+|-|+++.. .....+|..+.+++++||.+
T Consensus 153 ~i~~~~~D~~~~~~-~~~~drvim~lp----~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 153 RIEVINGDAREFLP-EGKFDRVIMNLP----ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp TEEEEES-GGG----TT-EEEEEE--T----SSGGGGHHHHHHHEEEEEEE
T ss_pred eEEEEcCCHHHhcC-ccccCEEEECCh----HHHHHHHHHHHHHhcCCcEE
Confidence 89999999988754 678999998664 23346788899999999876
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-07 Score=82.67 Aligned_cols=107 Identities=20% Similarity=0.222 Sum_probs=80.9
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEcc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~d 160 (288)
.+.+||.||+|.|..+..+++.. +..+++++|+++++++.+++.+... .+.+++++++.+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-----------------~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~D 165 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-----------------TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIND 165 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-----------------CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEECh
Confidence 45689999999999999888864 3478999999999999999987532 1334799999999
Q ss_pred cccC-CCCCCCeeEEEecccccc---ccC---HHHHHH-HHHhhccCCcEEEEE
Q 036563 161 AEAL-CFEDSTMDGYTIAFGIRN---VTH---IEKALA-EAYRVLKRGGRFLCL 206 (288)
Q Consensus 161 ~~~~-~~~~~~~D~v~~~~~l~~---~~~---~~~~l~-~~~~~L~pgG~l~i~ 206 (288)
+... ....++||+|++...-.. ... ...+++ .+++.|+|||.+++.
T Consensus 166 a~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 166 ARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred hHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 8764 334568999998742110 000 245787 899999999998753
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.4e-07 Score=80.32 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=93.4
Q ss_pred HHHHHHHhHhhHHHhhhhhhhh--hhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccc
Q 036563 43 QLVSNVFSSVAKNYDLMNDLMS--GGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120 (288)
Q Consensus 43 ~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~ 120 (288)
..+.++|+..-..+....+... .-....+.+.+...+...++.+|+|.+||+|.+...+.+.+......
T Consensus 4 d~~g~~yE~~l~~~~~~~~k~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~--------- 74 (311)
T PF02384_consen 4 DILGDLYEYFLKKFAKESRKKLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNK--------- 74 (311)
T ss_dssp HHHHHHHHHHHHHHHHCTTTSCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHH---------
T ss_pred cHHHHHHHHHHHHHHHHhccccceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccc---------
Confidence 3456667666555532111110 11123455677788877778899999999999999888754100000
Q ss_pred cCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCC-C-CCCeeEEEeccccccc--cC-----------
Q 036563 121 LQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCF-E-DSTMDGYTIAFGIRNV--TH----------- 185 (288)
Q Consensus 121 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~-~-~~~~D~v~~~~~l~~~--~~----------- 185 (288)
.....++|+|+++.+...++.++.-.+....+..+..+|....+. . ...||+|+++..+... .+
T Consensus 75 -~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~ 153 (311)
T PF02384_consen 75 -IKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKK 153 (311)
T ss_dssp -HCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTT
T ss_pred -cccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccccccccCCCCccccccccccccccccccc
Confidence 035899999999999999887765544432334577777654332 2 4689999998775433 10
Q ss_pred --------HHHHHHHHHhhccCCcEEEEE
Q 036563 186 --------IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 186 --------~~~~l~~~~~~L~pgG~l~i~ 206 (288)
...++..+.+.|++||++.++
T Consensus 154 ~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 154 YFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp CSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCccchhhhhHHHHHhhcccccceeEE
Confidence 124789999999999997754
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.1e-06 Score=71.86 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=77.9
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.++..++.+||-+|+++|....++.+..+ +.+.|++++.|+............. +|+-.+
T Consensus 68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg----------------~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPI 127 (229)
T PF01269_consen 68 NIPIKPGSKVLYLGAASGTTVSHVSDIVG----------------PDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPI 127 (229)
T ss_dssp --S--TT-EEEEETTTTSHHHHHHHHHHT----------------TTSEEEEEESSHHHHHHHHHHHHHS----TTEEEE
T ss_pred ccCCCCCCEEEEecccCCCccchhhhccC----------------CCCcEEEEEecchhHHHHHHHhccC----Cceeee
Confidence 45567899999999999999999999986 5789999999997765555444444 799999
Q ss_pred EcccccCC---CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 158 EGDAEALC---FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 158 ~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..|+.... ..-+.+|+|++.-+ ......-++.++...||+||.++++
T Consensus 128 l~DAr~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 128 LEDARHPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp ES-TTSGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eccCCChHHhhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 99997642 22348999998655 2234556788999999999999874
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.4e-06 Score=69.76 Aligned_cols=115 Identities=20% Similarity=0.260 Sum_probs=87.8
Q ss_pred hHHHHHHHHhhcCC----CC-CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHH
Q 036563 68 HRLWKDRLVSKLNP----FP-GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKK 142 (288)
Q Consensus 68 ~~~~~~~~~~~l~~----~~-~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~ 142 (288)
.+.|.+.+...+.. .. +.+++|||+|.|..+..++=.. |..+++.+|....-....++
T Consensus 47 ~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~-----------------p~~~vtLles~~Kk~~FL~~ 109 (215)
T COG0357 47 EELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAF-----------------PDLKVTLLESLGKKIAFLRE 109 (215)
T ss_pred HHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhc-----------------cCCcEEEEccCchHHHHHHH
Confidence 45566555554421 22 5799999999999999888544 56779999999988888888
Q ss_pred HhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 143 RALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 143 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
...+.++ +|++++.+-++++......||+|++..+ .+...+..-+..++++||.++.
T Consensus 110 ~~~eL~L--~nv~i~~~RaE~~~~~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 110 VKKELGL--ENVEIVHGRAEEFGQEKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred HHHHhCC--CCeEEehhhHhhcccccccCcEEEeehc----cchHHHHHHHHHhcccCCcchh
Confidence 8888887 4899999999887532211999997654 4567788889999999998863
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.5e-07 Score=76.18 Aligned_cols=112 Identities=22% Similarity=0.251 Sum_probs=86.0
Q ss_pred HHHhhcC--CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC---
Q 036563 74 RLVSKLN--PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG--- 148 (288)
Q Consensus 74 ~~~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--- 148 (288)
.+++.|. ..|+.+.||+|+|+|.++..++..++. ++...+|+|.-++.++.+++++...-
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~---------------~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~ 135 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGA---------------TGGNVHGIEHIPELVEYSKKNLDKDITTS 135 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcC---------------CCccccchhhhHHHHHHHHHHHHhhccCc
Confidence 4445555 678999999999999999999877642 33445999999999999998876542
Q ss_pred -----CCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 149 -----YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 149 -----~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+...++.++.+|.....-+..+||.|.+.... ....+++...|++||.+++.
T Consensus 136 e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 136 ESSSKLKRGELSIVVGDGRKGYAEQAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred hhhhhhccCceEEEeCCccccCCccCCcceEEEccCc------cccHHHHHHhhccCCeEEEe
Confidence 33467889999998876677789999987442 33455677788999999873
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.8e-07 Score=75.90 Aligned_cols=144 Identities=16% Similarity=0.109 Sum_probs=82.6
Q ss_pred HhhcCC-CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 76 VSKLNP-FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 76 ~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
.+.++. .++.+|||+|||||.++..+++.. ..+++++|++++|+...... . +++
T Consensus 67 l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g------------------a~~v~avD~~~~~l~~~l~~---~----~~v 121 (228)
T TIGR00478 67 LEEFNIDVKNKIVLDVGSSTGGFTDCALQKG------------------AKEVYGVDVGYNQLAEKLRQ---D----ERV 121 (228)
T ss_pred HHhcCCCCCCCEEEEcccCCCHHHHHHHHcC------------------CCEEEEEeCCHHHHHHHHhc---C----CCe
Confidence 344433 456789999999999999999872 37899999999888752211 1 232
Q ss_pred E-EEEcccccCC-----CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccc
Q 036563 155 L-WVEGDAEALC-----FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVI 228 (288)
Q Consensus 155 ~-~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 228 (288)
. +...|+.... ..-..+|+++++.. ..+..+.+.|+| |.+++. ..|+...-. ....
T Consensus 122 ~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~--------~~l~~i~~~l~~-~~~~~L--~KPqFE~~~---~~~~---- 183 (228)
T TIGR00478 122 KVLERTNIRYVTPADIFPDFATFDVSFISLI--------SILPELDLLLNP-NDLTLL--FKPQFEAGR---EKKN---- 183 (228)
T ss_pred eEeecCCcccCCHhHcCCCceeeeEEEeehH--------hHHHHHHHHhCc-CeEEEE--cChHhhhcH---hhcC----
Confidence 2 3333443221 11124676665443 248889999999 877652 233221111 1110
Q ss_pred ccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 229 PAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
. +.++. +...+. .-.+++...+.+.||.+..+..
T Consensus 184 -~-~giv~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T TIGR00478 184 -K-KGVVR-DKEAIA---------LALHKVIDKGESPDFQEKKIIF 217 (228)
T ss_pred -c-CCeec-CHHHHH---------HHHHHHHHHHHcCCCeEeeEEE
Confidence 0 11111 111111 1346777888889999887754
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-06 Score=72.54 Aligned_cols=122 Identities=16% Similarity=0.185 Sum_probs=87.9
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..++|||||=+......- . +...++.+|+++. .-.+.+.|+.+
T Consensus 52 ~lrlLEVGals~~N~~s~---~-----------------~~fdvt~IDLns~-----------------~~~I~qqDFm~ 94 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---S-----------------GWFDVTRIDLNSQ-----------------HPGILQQDFME 94 (219)
T ss_pred cceEEeecccCCCCcccc---c-----------------CceeeEEeecCCC-----------------CCCceeecccc
Confidence 369999999654322211 1 2356999999772 34567788877
Q ss_pred CCCC---CCCeeEEEeccccccccCHH---HHHHHHHhhccCCcE-----EEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 164 LCFE---DSTMDGYTIAFGIRNVTHIE---KALAEAYRVLKRGGR-----FLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 164 ~~~~---~~~~D~v~~~~~l~~~~~~~---~~l~~~~~~L~pgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
.|.| +++||+|.++.+|.+++++. .+++.+.++|+|+|. ++++-. ..- +
T Consensus 95 rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP---~~C-v---------------- 154 (219)
T PF11968_consen 95 RPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP---LPC-V---------------- 154 (219)
T ss_pred CCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC---chH-h----------------
Confidence 7653 57899999999999999864 589999999999999 765421 110 0
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 277 (288)
...++++.+.|..+|+..||..+..+....
T Consensus 155 ---------------~NSRy~~~~~l~~im~~LGf~~~~~~~~~K 184 (219)
T PF11968_consen 155 ---------------TNSRYMTEERLREIMESLGFTRVKYKKSKK 184 (219)
T ss_pred ---------------hcccccCHHHHHHHHHhCCcEEEEEEecCe
Confidence 012366889999999999999998876543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.8e-07 Score=85.69 Aligned_cols=106 Identities=15% Similarity=0.148 Sum_probs=86.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+-.+||||||.|.++..++... |+..++|+|+....+..+.++....++. |+.++..|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-----------------p~~~~iGiE~~~~~~~~~~~~~~~~~l~--N~~~~~~~~~ 407 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-----------------PDALFIGVEVYLNGVANVLKLAGEQNIT--NFLLFPNNLD 407 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-----------------CCCCEEEEEeeHHHHHHHHHHHHHcCCC--eEEEEcCCHH
Confidence 34579999999999999999998 6799999999999888888887777774 8888888875
Q ss_pred cC--CCCCCCeeEEEeccccccccC--------HHHHHHHHHhhccCCcEEEEEe
Q 036563 163 AL--CFEDSTMDGYTIAFGIRNVTH--------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 163 ~~--~~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.+ -++++++|.|++++.--+... -..+++.+.++|+|||.+.+.+
T Consensus 408 ~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 408 LILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred HHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 43 367788999999887444331 1568999999999999998754
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.1e-06 Score=70.93 Aligned_cols=110 Identities=20% Similarity=0.258 Sum_probs=88.2
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+++.+. +.++||||.=||..+..++..++ ++++++++|++++..+.+....+..+.. .
T Consensus 66 ~~li~~~~---ak~~lelGvfTGySaL~~Alalp----------------~dGrv~a~eid~~~~~~~~~~~k~agv~-~ 125 (237)
T KOG1663|consen 66 QMLIRLLN---AKRTLELGVFTGYSALAVALALP----------------EDGRVVAIEIDADAYEIGLELVKLAGVD-H 125 (237)
T ss_pred HHHHHHhC---CceEEEEecccCHHHHHHHHhcC----------------CCceEEEEecChHHHHHhHHHHHhcccc-c
Confidence 44444443 57999999999999999999986 6799999999999999998888888777 8
Q ss_pred ceEEEEcccccC------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 153 SLLWVEGDAEAL------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 153 ~v~~~~~d~~~~------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
.+.++++++.+. ....++||.++...- -.+......++.+++|+||.+++
T Consensus 126 KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDad---K~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 126 KITFIEGPALESLDELLADGESGTFDFAFVDAD---KDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred eeeeeecchhhhHHHHHhcCCCCceeEEEEccc---hHHHHHHHHHHHhhcccccEEEE
Confidence 899999987553 245678999996432 12345788999999999999986
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.2e-07 Score=76.76 Aligned_cols=147 Identities=17% Similarity=0.200 Sum_probs=89.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC-------------
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY------------- 149 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~------------- 149 (288)
++.++||||||+-......+... -.+|+..|..+..++..++.+...+.
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~------------------f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~l 117 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW------------------FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCEL 117 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT------------------EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh------------------hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhc
Confidence 46689999999955432222221 26799999999888877776544311
Q ss_pred --CC-----------Cce-EEEEcccccCC-CCC-----CCeeEEEecccccccc-C---HHHHHHHHHhhccCCcEEEE
Q 036563 150 --PD-----------KSL-LWVEGDAEALC-FED-----STMDGYTIAFGIRNVT-H---IEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 150 --~~-----------~~v-~~~~~d~~~~~-~~~-----~~~D~v~~~~~l~~~~-~---~~~~l~~~~~~L~pgG~l~i 205 (288)
.. ..+ +++.+|+.+.+ +.. .++|+|++.++++... + ..++++++.++|||||.|++
T Consensus 118 Eg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 118 EGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp TTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 00 112 36677876643 222 2599999999987553 3 46789999999999999998
Q ss_pred EeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 206 LELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
+....... |. .|. . .+. .-..+.+.+++.|+++||.+++.+.
T Consensus 198 ~~~l~~t~---------Y~------vG~-----~-~F~------~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 198 AGVLGSTY---------YM------VGG-----H-KFP------CLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp EEESS-SE---------EE------ETT-----E-EEE---------B-HHHHHHHHHHTTEEEEEEEG
T ss_pred EEEcCcee---------EE------ECC-----E-ecc------cccCCHHHHHHHHHHcCCEEEeccc
Confidence 65432110 00 010 0 010 0134889999999999999998874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1e-06 Score=80.98 Aligned_cols=100 Identities=25% Similarity=0.227 Sum_probs=79.8
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+|||++||+|..+..++...+ ..+|+++|+++.+++.+++++..+++. ++.+..+|+..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-----------------~~~V~a~Din~~Av~~a~~N~~~N~~~--~~~v~~~Da~~ 118 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-----------------VEKVTLNDINPDAVELIKKNLELNGLE--NEKVFNKDANA 118 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-----------------CCEEEEEeCCHHHHHHHHHHHHHhCCC--ceEEEhhhHHH
Confidence 46899999999999999988752 358999999999999999999887764 67788899866
Q ss_pred CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 164 LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+....+.||+|++... ..+..++..+.+.+++||.+++.
T Consensus 119 ~l~~~~~fD~V~lDP~----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 119 LLHEERKFDVVDIDPF----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred HHhhcCCCCEEEECCC----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 4211456999998652 23466788877888999999975
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-06 Score=76.69 Aligned_cols=107 Identities=21% Similarity=0.291 Sum_probs=85.4
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC--CCCCceEEE
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG--YPDKSLLWV 157 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~v~~~ 157 (288)
+..+ .+||-||.|.|..+..++++. +..+++.+|+++..++.+++.+.... ..++++.++
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~-----------------~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~ 135 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHL-----------------PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEII 135 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcC-----------------CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEE
Confidence 3444 699999999999999999986 45899999999999999999987554 114789999
Q ss_pred EcccccCC-CCCCCeeEEEeccccccccCH------HHHHHHHHhhccCCcEEEEE
Q 036563 158 EGDAEALC-FEDSTMDGYTIAFGIRNVTHI------EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 158 ~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~------~~~l~~~~~~L~pgG~l~i~ 206 (288)
.+|..++- -..++||+|++...=. . .+ ..+++.+++.|+++|.++..
T Consensus 136 i~Dg~~~v~~~~~~fDvIi~D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 136 IDDGVEFLRDCEEKFDVIIVDSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred eccHHHHHHhCCCcCCEEEEcCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 99987652 2233799999866532 1 22 77999999999999999975
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.3e-06 Score=75.16 Aligned_cols=122 Identities=20% Similarity=0.300 Sum_probs=93.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
......+.+.++.+|||+++++|.=+.++++.... .+..|+++|.++.-+...++++...|+.
T Consensus 146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~---------------~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-- 208 (355)
T COG0144 146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELMEN---------------EGAIVVAVDVSPKRLKRLRENLKRLGVR-- 208 (355)
T ss_pred HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCC---------------CCceEEEEcCCHHHHHHHHHHHHHcCCC--
Confidence 34456778899999999999999999999998741 1345699999999999999999999885
Q ss_pred ceEEEEcccccCC---CCCCCeeEEEeccccccc------cCH----------------HHHHHHHHhhccCCcEEEEEe
Q 036563 153 SLLWVEGDAEALC---FEDSTMDGYTIAFGIRNV------THI----------------EKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 153 ~v~~~~~d~~~~~---~~~~~~D~v~~~~~l~~~------~~~----------------~~~l~~~~~~L~pgG~l~i~~ 207 (288)
++.....|....+ ...++||.|++....... ++. .++|....++|||||.++...
T Consensus 209 nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 209 NVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred ceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 6888888876543 222359999985442211 111 457999999999999999877
Q ss_pred ccCC
Q 036563 208 LSHV 211 (288)
Q Consensus 208 ~~~~ 211 (288)
++..
T Consensus 289 CS~~ 292 (355)
T COG0144 289 CSLT 292 (355)
T ss_pred cCCc
Confidence 7654
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=74.14 Aligned_cols=88 Identities=23% Similarity=0.317 Sum_probs=74.1
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+.+++..+..++..|||+|.|||.++..+++.. .+|+++++++.|+....++...-...
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~-------------------kkVvA~E~Dprmvael~krv~gtp~~ 106 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG-------------------KKVVAVEIDPRMVAELEKRVQGTPKS 106 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc-------------------CeEEEEecCcHHHHHHHHHhcCCCcc
Confidence 34567777888889999999999999999999985 89999999999999999988665544
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEecccc
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGI 180 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l 180 (288)
...+++.+|+.+.+++ .||.|+++...
T Consensus 107 -~kLqV~~gD~lK~d~P--~fd~cVsNlPy 133 (315)
T KOG0820|consen 107 -GKLQVLHGDFLKTDLP--RFDGCVSNLPY 133 (315)
T ss_pred -ceeeEEecccccCCCc--ccceeeccCCc
Confidence 6899999999887655 59999986653
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.1e-06 Score=68.63 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=90.3
Q ss_pred HHHHHHHHhhcCC--CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 69 RLWKDRLVSKLNP--FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 69 ~~~~~~~~~~l~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
.+.++.+...+.. -.+.++||+-+|+|.++..++.+. ...++.+|.+.......+++...
T Consensus 27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG------------------A~~~~~vE~~~~a~~~l~~N~~~ 88 (187)
T COG0742 27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG------------------AARVVFVEKDRKAVKILKENLKA 88 (187)
T ss_pred hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC------------------CceEEEEecCHHHHHHHHHHHHH
Confidence 4556667777765 578899999999999999999885 37899999999999999999988
Q ss_pred cCCCCCceEEEEcccccC-CCCC--CCeeEEEecccccc-ccCHHHHHHH--HHhhccCCcEEEEE
Q 036563 147 RGYPDKSLLWVEGDAEAL-CFED--STMDGYTIAFGIRN-VTHIEKALAE--AYRVLKRGGRFLCL 206 (288)
Q Consensus 147 ~~~~~~~v~~~~~d~~~~-~~~~--~~~D~v~~~~~l~~-~~~~~~~l~~--~~~~L~pgG~l~i~ 206 (288)
.++. .+.+++..|+... .... +.||+|++...++. +-+....+.. -...|+|+|.+++-
T Consensus 89 l~~~-~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 89 LGLE-GEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred hCCc-cceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 8766 6788888887743 1122 24999999888762 2222333333 45779999999863
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.4e-06 Score=76.52 Aligned_cols=106 Identities=8% Similarity=0.091 Sum_probs=75.0
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.+.+... +.++||++||+|.++..+++.. .+++++|+++.+++.+++++...++.
T Consensus 197 ~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~-------------------~~v~~vE~~~~ai~~a~~N~~~~~~~-- 254 (362)
T PRK05031 197 EWALDATKGS-KGDLLELYCGNGNFTLALARNF-------------------RRVLATEISKPSVAAAQYNIAANGID-- 254 (362)
T ss_pred HHHHHHhhcC-CCeEEEEeccccHHHHHHHhhC-------------------CEEEEEECCHHHHHHHHHHHHHhCCC--
Confidence 3444444332 3579999999999999888764 68999999999999999998887763
Q ss_pred ceEEEEcccccC-C-CC--------------CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 153 SLLWVEGDAEAL-C-FE--------------DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 153 ~v~~~~~d~~~~-~-~~--------------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+++++.+|+.+. . +. ..+||+|++...-... ...+++.+.+ |++.+++
T Consensus 255 ~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~--~~~~l~~l~~---~~~ivyv 318 (362)
T PRK05031 255 NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL--DDETLKLVQA---YERILYI 318 (362)
T ss_pred cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCC--cHHHHHHHHc---cCCEEEE
Confidence 899999998663 1 10 1258999987763221 2445555544 5665554
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.7e-06 Score=77.57 Aligned_cols=107 Identities=7% Similarity=0.015 Sum_probs=75.1
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+.+.+.+...+ .+|||++||+|.++..+++.. .+++++|+++.+++.+++++...++.
T Consensus 187 ~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~-------------------~~v~~vE~~~~av~~a~~n~~~~~~~- 245 (353)
T TIGR02143 187 LEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF-------------------RRVLATEIAKPSVNAAQYNIAANNID- 245 (353)
T ss_pred HHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC-------------------CEEEEEECCHHHHHHHHHHHHHcCCC-
Confidence 344445544323 479999999999999888774 68999999999999999999888764
Q ss_pred CceEEEEcccccCCC-----------C-----CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 152 KSLLWVEGDAEALCF-----------E-----DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~-----------~-----~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+++++.+|+.+... . ...||+|++...=.. -...+++.+.+ |++.+++
T Consensus 246 -~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G--~~~~~l~~l~~---~~~ivYv 309 (353)
T TIGR02143 246 -NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG--LDPDTCKLVQA---YERILYI 309 (353)
T ss_pred -cEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCC--CcHHHHHHHHc---CCcEEEE
Confidence 79999999876321 0 113799998666111 12445555543 6666664
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-05 Score=67.07 Aligned_cols=136 Identities=16% Similarity=0.142 Sum_probs=92.2
Q ss_pred EEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCC
Q 036563 87 HLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCF 166 (288)
Q Consensus 87 vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~ 166 (288)
|.||||--|.+...+++.. ...+++++|+++..++.|++.+...++. .++++..+|....-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~-----------------~~~~~ia~DI~~gpL~~A~~~i~~~~l~-~~i~~rlgdGL~~l~ 62 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-----------------KAPKAIAVDINPGPLEKAKENIAKYGLE-DRIEVRLGDGLEVLK 62 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-----------------SEEEEEEEESSHHHHHHHHHHHHHTT-T-TTEEEEE-SGGGG--
T ss_pred CceeccchhHHHHHHHhcC-----------------CCCEEEEEeCCHHHHHHHHHHHHHcCCc-ccEEEEECCcccccC
Confidence 6899999999999999986 3468999999999999999999999887 789999999654322
Q ss_pred CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhH
Q 036563 167 EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLV 246 (288)
Q Consensus 167 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (288)
+.+..|.|+....= -.-...+|.+....++....|++...
T Consensus 63 ~~e~~d~ivIAGMG--G~lI~~ILe~~~~~~~~~~~lILqP~-------------------------------------- 102 (205)
T PF04816_consen 63 PGEDVDTIVIAGMG--GELIIEILEAGPEKLSSAKRLILQPN-------------------------------------- 102 (205)
T ss_dssp GGG---EEEEEEE---HHHHHHHHHHTGGGGTT--EEEEEES--------------------------------------
T ss_pred CCCCCCEEEEecCC--HHHHHHHHHhhHHHhccCCeEEEeCC--------------------------------------
Confidence 22337888765541 11246677777777766667765321
Q ss_pred HHHhcCCChHHHHHHHHHcCCcEEEEEEeeC--CeeEEEEee
Q 036563 247 ESVRRFPPQEKFAAMISDAGFQKVEYENLVG--GVVAIHSGL 286 (288)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~--~~~~~~~~~ 286 (288)
.....++.+|.+.||.+++-.-... -++-+..+.
T Consensus 103 ------~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 103 ------THAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAE 138 (205)
T ss_dssp ------S-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred ------CChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEE
Confidence 1457889999999999887665433 344444443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.1e-07 Score=78.19 Aligned_cols=89 Identities=22% Similarity=0.365 Sum_probs=72.6
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+++++.+...++..+||++||.|..+..+++..+ +.++|+|+|.++.+++.+++++.. .
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~----------------~~g~VigiD~D~~al~~ak~~L~~--~-- 67 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLG----------------PKGRLIAIDRDPDAIAAAKDRLKP--F-- 67 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCC----------------CCCEEEEEcCCHHHHHHHHHhhcc--C--
Confidence 35677888777888999999999999999999873 468999999999999999988755 1
Q ss_pred CceEEEEcccccCC--CCC--CCeeEEEecccc
Q 036563 152 KSLLWVEGDAEALC--FED--STMDGYTIAFGI 180 (288)
Q Consensus 152 ~~v~~~~~d~~~~~--~~~--~~~D~v~~~~~l 180 (288)
.++.++.+|+.++. .+. .++|.|++...+
T Consensus 68 ~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 68 GRFTLVHGNFSNLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred CcEEEEeCCHHHHHHHHHcCCCccCEEEECCCc
Confidence 58999999988762 111 279999987653
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-06 Score=74.21 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=75.4
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
+....+.+++.....++..|||||+|.|.++..+++.. .+++++++++.+++..++.....
T Consensus 15 d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~-------------------~~v~aiEiD~~l~~~L~~~~~~~ 75 (259)
T COG0030 15 DKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA-------------------ARVTAIEIDRRLAEVLKERFAPY 75 (259)
T ss_pred CHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc-------------------CeEEEEEeCHHHHHHHHHhcccc
Confidence 34456778888888888899999999999999999985 78999999999999998887633
Q ss_pred CCCCCceEEEEcccccCCCCCC-CeeEEEeccccc
Q 036563 148 GYPDKSLLWVEGDAEALCFEDS-TMDGYTIAFGIR 181 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~~~~~-~~D~v~~~~~l~ 181 (288)
.+++++.+|+.+.+++.- .++.|++|...+
T Consensus 76 ----~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 76 ----DNLTVINGDALKFDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred ----cceEEEeCchhcCcchhhcCCCEEEEcCCCc
Confidence 689999999998877643 578888877643
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.5e-06 Score=69.14 Aligned_cols=119 Identities=19% Similarity=0.282 Sum_probs=88.4
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC-CCceEEEEcc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP-DKSLLWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~v~~~~~d 160 (288)
.++.+||+||-|-|.....+.+.- -.+-+.++..|..++..+.. ++. +.||.+..+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~------------------p~~H~IiE~hp~V~krmr~~----gw~ek~nViil~g~ 157 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAP------------------PDEHWIIEAHPDVLKRMRDW----GWREKENVIILEGR 157 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcC------------------CcceEEEecCHHHHHHHHhc----ccccccceEEEecc
Confidence 568899999999999988887763 36667889999888766554 332 3678887776
Q ss_pred cccC--CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHH
Q 036563 161 AEAL--CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDY 222 (288)
Q Consensus 161 ~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~ 222 (288)
-++. .++++.||-|+...--.+..|...+.+.+.++|||+|++-.......++..+...+..
T Consensus 158 WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~~vy~~ 221 (271)
T KOG1709|consen 158 WEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLGADNLMFYDVYKI 221 (271)
T ss_pred hHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcccchhhhhhhhhe
Confidence 5553 4678889999876655666788889999999999999998754444455555544443
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.2e-06 Score=73.26 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=80.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC--CCCCceEEEEcc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG--YPDKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~v~~~~~d 160 (288)
.+.+||=||.|.|..+..+++.. +..+++++|+++.+++.+++.+.... +.+++++++.+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-----------------~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D 138 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-----------------PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD 138 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-----------------T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST
T ss_pred CcCceEEEcCCChhhhhhhhhcC-----------------CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh
Confidence 46799999999999999998774 35799999999999999999876432 235799999999
Q ss_pred cccC-CCCCC-CeeEEEeccccccccC----HHHHHHHHHhhccCCcEEEEEe
Q 036563 161 AEAL-CFEDS-TMDGYTIAFGIRNVTH----IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 161 ~~~~-~~~~~-~~D~v~~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+... .-..+ +||+|+....-...+. ...+++.+++.|+|||.+++..
T Consensus 139 g~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 139 GRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8764 22233 8999998554321111 2678999999999999998754
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.7e-07 Score=76.99 Aligned_cols=93 Identities=22% Similarity=0.268 Sum_probs=72.1
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.++||+|+|.|.++..++..+ .+|++.+.|..|..+.+++- + ++--. .+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f-------------------eevyATElS~tMr~rL~kk~----y---nVl~~-~e-- 162 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF-------------------EEVYATELSWTMRDRLKKKN----Y---NVLTE-IE-- 162 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH-------------------HHHHHHHhhHHHHHHHhhcC----C---ceeee-hh--
Confidence 34789999999999999998887 57899999999988776541 1 22111 11
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccC-CcEEEE
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKR-GGRFLC 205 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~i 205 (288)
....+-++|+|.|.+.+....++-+.|+.++.+|+| +|.+++
T Consensus 163 -w~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 163 -WLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred -hhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 111234699999999998888999999999999999 888775
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-05 Score=69.73 Aligned_cols=106 Identities=13% Similarity=0.202 Sum_probs=66.3
Q ss_pred CCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh-hcCCCCCceEEEEccc
Q 036563 84 GMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL-ERGYPDKSLLWVEGDA 161 (288)
Q Consensus 84 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~v~~~~~d~ 161 (288)
+.+|+=||||+ -..+..+++.+. ++..++++|+++.+.+.+++-.. ..++. .++.+..+|.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~----------------~~~~v~~iD~d~~A~~~a~~lv~~~~~L~-~~m~f~~~d~ 183 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHG----------------PGARVHNIDIDPEANELARRLVASDLGLS-KRMSFITADV 183 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HT----------------T--EEEEEESSHHHHHHHHHHHH---HH--SSEEEEES-G
T ss_pred cceEEEEcCCCcchHHHHHHHHhC----------------CCCeEEEEeCCHHHHHHHHHHHhhccccc-CCeEEEecch
Confidence 45999999997 455555665553 45789999999999999988776 33444 6899999998
Q ss_pred ccCCCCCCCeeEEEeccccc-cccCHHHHHHHHHhhccCCcEEEEE
Q 036563 162 EALCFEDSTMDGYTIAFGIR-NVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~-~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
......-..||+|+...... .-.+..++|.++.+.++||..+++-
T Consensus 184 ~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 184 LDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp GGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 77654445799998766554 2236788999999999999999863
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.3e-06 Score=63.73 Aligned_cols=103 Identities=15% Similarity=0.042 Sum_probs=70.2
Q ss_pred HHHHhhcCCCCCCeEEEecCCccH-HHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGD-VAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
+.+.+.+...++.+|||||||+|. ++..+.+. +.+|+++|+++..++.+++.
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-------------------G~~ViaIDi~~~aV~~a~~~-------- 58 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES-------------------GFDVIVIDINEKAVEKAKKL-------- 58 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC-------------------CCEEEEEECCHHHHHHHHHh--------
Confidence 445566655567899999999996 77766654 48999999999988877664
Q ss_pred CceEEEEcccccCCCC-CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 152 KSLLWVEGDAEALCFE-DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+.++.+|+.+..+. -..+|+|.+... .++....+.++.+.+ |.-+++..+
T Consensus 59 -~~~~v~dDlf~p~~~~y~~a~liysirp---p~el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 59 -GLNAFVDDLFNPNLEIYKNAKLIYSIRP---PRDLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred -CCeEEECcCCCCCHHHHhcCCEEEEeCC---CHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 467899998776432 245899986443 234455555555533 455665443
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.37 E-value=3e-07 Score=85.10 Aligned_cols=109 Identities=21% Similarity=0.261 Sum_probs=72.3
Q ss_pred HHHHHHHhhcCC--CCC--CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEE---EeCChhHHHHHHH
Q 036563 70 LWKDRLVSKLNP--FPG--MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYV---CDINPNMLNVGKK 142 (288)
Q Consensus 70 ~~~~~~~~~l~~--~~~--~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~D~s~~~~~~a~~ 142 (288)
.+.+.+.+.++. ..+ -.+||+|||+|.++..++++. -.... -|..+..++.|.+
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~-------------------V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN-------------------VTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC-------------------ceEEEcccccCCchhhhhhhh
Confidence 455566666654 222 258999999999999998873 11111 2334445555443
Q ss_pred HhhhcCCCCCceEEEEc--ccccCCCCCCCeeEEEecccccccc-CHHHHHHHHHhhccCCcEEEEE
Q 036563 143 RALERGYPDKSLLWVEG--DAEALCFEDSTMDGYTIAFGIRNVT-HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 143 ~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~D~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+ |++ .+.+ .-..+|+++.+||+|.|..++..+. +-...|-++.|+|+|||+++..
T Consensus 161 R----Gvp-----a~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S 218 (506)
T PF03141_consen 161 R----GVP-----AMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLS 218 (506)
T ss_pred c----Ccc-----hhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEec
Confidence 3 332 1222 2356899999999999999876553 3345788999999999999963
|
; GO: 0008168 methyltransferase activity |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.7e-06 Score=70.76 Aligned_cols=127 Identities=16% Similarity=0.154 Sum_probs=76.7
Q ss_pred HHHHHHHHhhcCCCCC-CeEEEecCCc--cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh
Q 036563 69 RLWKDRLVSKLNPFPG-MKHLDVAGGT--GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL 145 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~-~~vLDiG~G~--G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 145 (288)
+.+....++.+....| ...||||||- -.....+++... |.++|..+|.+|-.+..++..+.
T Consensus 53 R~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~----------------P~aRVVYVD~DPvv~ah~ralL~ 116 (267)
T PF04672_consen 53 RAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVA----------------PDARVVYVDNDPVVLAHARALLA 116 (267)
T ss_dssp HHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-----------------TT-EEEEEESSHHHHHCCHHHHT
T ss_pred HHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhC----------------CCceEEEECCCchHHHHHHhhhc
Confidence 4444455555544423 3699999993 334444555554 78999999999999999988876
Q ss_pred hcCCCCCceEEEEcccccCC----------CCC-CCeeEEEecccccccc---CHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 146 ERGYPDKSLLWVEGDAEALC----------FED-STMDGYTIAFGIRNVT---HIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 146 ~~~~~~~~v~~~~~d~~~~~----------~~~-~~~D~v~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
...- ....++.+|+.+.. +.+ +..=.+++..++|+++ ++..++..++..|.||++|++...+..
T Consensus 117 ~~~~--g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 117 DNPR--GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp T-TT--SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCC--ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 6521 13889999987642 111 1223567778888885 478899999999999999998777664
Q ss_pred Ch
Q 036563 212 DI 213 (288)
Q Consensus 212 ~~ 213 (288)
..
T Consensus 195 ~~ 196 (267)
T PF04672_consen 195 GA 196 (267)
T ss_dssp TS
T ss_pred CC
Confidence 33
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.9e-06 Score=72.30 Aligned_cols=98 Identities=13% Similarity=0.032 Sum_probs=76.8
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~ 159 (288)
+.+.+||=||.|.|..+..++++ + .+++.+|+++.+++.+++.+... ++.+++++++..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh------------------~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~ 131 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY------------------D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ 131 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc------------------C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh
Confidence 44679999999999999999998 3 49999999999999999965543 345678888752
Q ss_pred ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+. ....++||+|++... ....+.+.+++.|+|||.++..
T Consensus 132 -~~--~~~~~~fDVIIvDs~-----~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 132 -LL--DLDIKKYDLIICLQE-----PDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred -hh--hccCCcCCEEEEcCC-----CChHHHHHHHHhcCCCcEEEEC
Confidence 21 112367999998743 3367789999999999999864
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.5e-06 Score=70.75 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=73.6
Q ss_pred hhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHH-
Q 036563 65 GGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKR- 143 (288)
Q Consensus 65 ~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~- 143 (288)
++........+++.+...++...+|+|||.|.....++-..+ -.+.+|+|+.+...+.++..
T Consensus 24 GEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~-----------------~~~~~GIEi~~~~~~~a~~~~ 86 (205)
T PF08123_consen 24 GEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTG-----------------CKKSVGIEILPELHDLAEELL 86 (205)
T ss_dssp GGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH-------------------SEEEEEE-SHHHHHHHHHHH
T ss_pred eecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcC-----------------CcEEEEEEechHHHHHHHHHH
Confidence 333333445566778888889999999999999888877763 35699999999877666543
Q ss_pred ------hhhcCCCCCceEEEEcccccCCCC---CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 144 ------ALERGYPDKSLLWVEGDAEALCFE---DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 144 ------~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
....+....++.+..+|+.+.++. -...|+|++++..- -++....|.+....||+|.+++.
T Consensus 87 ~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 87 EELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred HHHHHHHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEE
Confidence 223333335778888887654311 12479999988642 23455667888888999988874
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-05 Score=71.40 Aligned_cols=120 Identities=25% Similarity=0.351 Sum_probs=92.7
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
......+.+.++.+|||+++++|.-+.++++... ..+.+++.|+++..+...+.++...|..
T Consensus 75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~----------------~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-- 136 (283)
T PF01189_consen 75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMG----------------NKGEIVANDISPKRLKRLKENLKRLGVF-- 136 (283)
T ss_dssp HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTT----------------TTSEEEEEESSHHHHHHHHHHHHHTT-S--
T ss_pred ccccccccccccccccccccCCCCceeeeeeccc----------------chhHHHHhccCHHHHHHHHHHHHhcCCc--
Confidence 3445567788899999999999999999999875 4689999999999999999999988874
Q ss_pred ceEEEEcccccC--CCCCCCeeEEEeccc------cccccCH----------------HHHHHHHHhhc----cCCcEEE
Q 036563 153 SLLWVEGDAEAL--CFEDSTMDGYTIAFG------IRNVTHI----------------EKALAEAYRVL----KRGGRFL 204 (288)
Q Consensus 153 ~v~~~~~d~~~~--~~~~~~~D~v~~~~~------l~~~~~~----------------~~~l~~~~~~L----~pgG~l~ 204 (288)
++.....|.... ......||.|++... +..-++. .++|+++.+.+ +|||+++
T Consensus 137 ~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lv 216 (283)
T PF01189_consen 137 NVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLV 216 (283)
T ss_dssp SEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEE
T ss_pred eEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEE
Confidence 788887887665 123346999998443 2222221 45799999999 9999999
Q ss_pred EEeccC
Q 036563 205 CLELSH 210 (288)
Q Consensus 205 i~~~~~ 210 (288)
....+.
T Consensus 217 YsTCS~ 222 (283)
T PF01189_consen 217 YSTCSL 222 (283)
T ss_dssp EEESHH
T ss_pred EEeccH
Confidence 876654
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-05 Score=66.73 Aligned_cols=106 Identities=25% Similarity=0.322 Sum_probs=77.4
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|+|+||.+|.++..+++..+ +...|+++|+.|-. .. +++.++++|+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~----------------~~~~ivavDi~p~~-----------~~--~~V~~iq~d~ 94 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLG----------------AGGKIVAVDILPMK-----------PI--PGVIFLQGDI 94 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhC----------------CCCcEEEEECcccc-----------cC--CCceEEeeec
Confidence 5678999999999999999999986 45669999997732 11 5799999998
Q ss_pred ccCC--------CCCCCeeEEEecccc-----ccccC------HHHHHHHHHhhccCCcEEEEEeccCCChHHH
Q 036563 162 EALC--------FEDSTMDGYTIAFGI-----RNVTH------IEKALAEAYRVLKRGGRFLCLELSHVDIPVF 216 (288)
Q Consensus 162 ~~~~--------~~~~~~D~v~~~~~l-----~~~~~------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~ 216 (288)
..-. +...++|+|++..+- +..++ ...++.-+..+|+|||.+++-.+.......+
T Consensus 95 ~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~ 168 (205)
T COG0293 95 TDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDL 168 (205)
T ss_pred cCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHH
Confidence 7642 444568999976652 11111 1446777888999999999877766544433
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-06 Score=79.34 Aligned_cols=110 Identities=31% Similarity=0.332 Sum_probs=93.0
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..++.+++|+|||-|.....+.... .+.++++|.++..+..+........+. .+-.++..|
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~------------------~~~~~Gl~~n~~e~~~~~~~~~~~~l~-~k~~~~~~~ 168 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFK------------------KAGVVGLDNNAYEAFRANELAKKAYLD-NKCNFVVAD 168 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhc------------------cCCccCCCcCHHHHHHHHHHHHHHHhh-hhcceehhh
Confidence 3456689999999999998887763 488999999998888887776666555 344458889
Q ss_pred cccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+.+.++++.+||.+.+..+..|.++...+++++.++++|||++++-++.
T Consensus 169 ~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 169 FGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred hhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 8888999999999999999999999999999999999999999975553
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.2e-05 Score=62.97 Aligned_cols=106 Identities=21% Similarity=0.184 Sum_probs=81.2
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.++..++.+||-+|+.+|....++.+-. +.+.+++++.|+.+.......+... +|+-.+
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv-----------------~~G~iYaVEfs~R~~reLl~~a~~R----~Ni~PI 129 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIV-----------------GEGRIYAVEFSPRPMRELLDVAEKR----PNIIPI 129 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhcc-----------------CCCcEEEEEecchhHHHHHHHHHhC----CCceee
Confidence 3456789999999999999999999987 3588999999998877666665554 689999
Q ss_pred EcccccCC---CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 158 EGDAEALC---FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 158 ~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..|+.... .--+..|+|+..-+- .+...-+..++...|++||+++++
T Consensus 130 L~DA~~P~~Y~~~Ve~VDviy~DVAQ--p~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 130 LEDARKPEKYRHLVEKVDVIYQDVAQ--PNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred ecccCCcHHhhhhcccccEEEEecCC--chHHHHHHHHHHHhcccCCeEEEE
Confidence 99987642 233569999865432 122445678999999999987763
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-06 Score=75.63 Aligned_cols=95 Identities=28% Similarity=0.327 Sum_probs=75.5
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+..++|+|||.|..... .|...+.++|.+...+..++.. +.......|+.
T Consensus 45 ~gsv~~d~gCGngky~~~---------------------~p~~~~ig~D~c~~l~~~ak~~--------~~~~~~~ad~l 95 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV---------------------NPLCLIIGCDLCTGLLGGAKRS--------GGDNVCRADAL 95 (293)
T ss_pred CcceeeecccCCcccCcC---------------------CCcceeeecchhhhhccccccC--------CCceeehhhhh
Confidence 367899999999876411 0456789999988777666542 12267889999
Q ss_pred cCCCCCCCeeEEEeccccccccC---HHHHHHHHHhhccCCcEEEEE
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTH---IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++|+.+.+||.++...++||+.. ...+++++.+.|+|||..++-
T Consensus 96 ~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 96 KLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred cCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 99999999999999999999964 467999999999999997763
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.4e-06 Score=66.42 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=67.2
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
-.+.-.+++++|+|||.|-++...... ....+.|+|+++++++.+.++..+..+ ++.+.
T Consensus 43 TygdiEgkkl~DLgcgcGmLs~a~sm~------------------~~e~vlGfDIdpeALEIf~rNaeEfEv---qidlL 101 (185)
T KOG3420|consen 43 TYGDIEGKKLKDLGCGCGMLSIAFSMP------------------KNESVLGFDIDPEALEIFTRNAEEFEV---QIDLL 101 (185)
T ss_pred hhccccCcchhhhcCchhhhHHHhhcC------------------CCceEEeeecCHHHHHHHhhchHHhhh---hhhee
Confidence 334456789999999999998554443 347899999999999999999888765 46889
Q ss_pred EcccccCCCCCCCeeEEEeccccc
Q 036563 158 EGDAEALCFEDSTMDGYTIAFGIR 181 (288)
Q Consensus 158 ~~d~~~~~~~~~~~D~v~~~~~l~ 181 (288)
++|+..+.+..+.||.++.+..+.
T Consensus 102 qcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 102 QCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred eeeccchhccCCeEeeEEecCCCC
Confidence 999888877778899999988765
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.8e-06 Score=68.62 Aligned_cols=101 Identities=19% Similarity=0.260 Sum_probs=64.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.++||+||++|.++..+++..+ +..+++++|+.+.. .. +++..+++|+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~----------------~~~~v~avDl~~~~-----------~~--~~~~~i~~d~~ 73 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGG----------------PAGRVVAVDLGPMD-----------PL--QNVSFIQGDIT 73 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTT----------------TEEEEEEEESSSTG-----------S---TTEEBTTGGGE
T ss_pred cccEEEEcCCcccceeeeeeeccc----------------ccceEEEEeccccc-----------cc--cceeeeecccc
Confidence 457999999999999999999862 35899999998761 01 34556666654
Q ss_pred cCC--------C--CCCCeeEEEeccccccccC-----------HHHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 163 ALC--------F--EDSTMDGYTIAFGIRNVTH-----------IEKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 163 ~~~--------~--~~~~~D~v~~~~~l~~~~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
+.. + ....+|+|++..+.....+ ....+.-+...|+|||.+++--+..+.
T Consensus 74 ~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~ 144 (181)
T PF01728_consen 74 NPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE 144 (181)
T ss_dssp EEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT
T ss_pred hhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc
Confidence 321 1 1258999999884332211 133456666889999999876665443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00016 Score=56.21 Aligned_cols=105 Identities=31% Similarity=0.381 Sum_probs=72.6
Q ss_pred EEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc--C
Q 036563 87 HLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA--L 164 (288)
Q Consensus 87 vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~--~ 164 (288)
++|+|||+|... .+..... ....++++|+++.++..+...... ... ..+.+...|... .
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~ 112 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG----------------RGAYVVGVDLSPEMLALARARAEG-AGL-GLVDFVVADALGGVL 112 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC----------------CCceEEEEeCCHHHHHHHHhhhhh-cCC-CceEEEEeccccCCC
Confidence 999999999987 3333321 113788899999999885444322 111 116778788765 5
Q ss_pred CCCC-CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 165 CFED-STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 165 ~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
++.. ..+|++ +.....+..+....+.++.+.++|+|.+++......
T Consensus 113 ~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 113 PFEDSASFDLV-ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred CCCCCCceeEE-eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 6665 489999 555444433478899999999999999998766544
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.3e-05 Score=70.44 Aligned_cols=112 Identities=22% Similarity=0.285 Sum_probs=91.6
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+++.... |.+|+|.=||-|.++..++.... .+|+++|+||.+++..++++.-+++. ..
T Consensus 181 Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~------------------~~V~A~diNP~A~~~L~eNi~LN~v~-~~ 239 (341)
T COG2520 181 RVAELVKE--GETVLDMFAGVGPFSIPIAKKGR------------------PKVYAIDINPDAVEYLKENIRLNKVE-GR 239 (341)
T ss_pred HHHhhhcC--CCEEEEccCCcccchhhhhhcCC------------------ceEEEEecCHHHHHHHHHHHHhcCcc-ce
Confidence 34444443 78999999999999999999852 44999999999999999999988887 56
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+..+++|+......-..+|-|+++.. .+...++....+.+++||.+..-++.+
T Consensus 240 v~~i~gD~rev~~~~~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 240 VEPILGDAREVAPELGVADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred eeEEeccHHHhhhccccCCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccc
Confidence 89999999888655468999997665 355678888899999999998766554
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00016 Score=65.58 Aligned_cols=135 Identities=16% Similarity=0.095 Sum_probs=89.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhh-----------hhh-----hcc------cccccCCCceE
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKR-----------RAL-----QDV------LEDDLQEETRI 127 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~-----------~~~-----~~~------~~~~~~~~~~v 127 (288)
.....|+...+..++..++|.=||+|.+.+..+........ .+. +.+ .-..+.+...+
T Consensus 178 tLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 178 TLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 33456666777777778999999999999888776531000 000 000 00000111157
Q ss_pred EEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEecccccc-ccC---H----HHHHHHHHhhccC
Q 036563 128 YVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN-VTH---I----EKALAEAYRVLKR 199 (288)
Q Consensus 128 ~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~-~~~---~----~~~l~~~~~~L~p 199 (288)
+|+|+++.+++.|+.+....++. ..+.|.++|+..+..+-+.+|+|++|....- +.+ . ..+.+.+++.++.
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~-d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ 336 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVG-DLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAG 336 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCC-ceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999998 8899999999988644368999999887431 111 2 2234455566666
Q ss_pred CcEEEE
Q 036563 200 GGRFLC 205 (288)
Q Consensus 200 gG~l~i 205 (288)
.+..++
T Consensus 337 ws~~v~ 342 (381)
T COG0116 337 WSRYVF 342 (381)
T ss_pred CceEEE
Confidence 566664
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.3e-05 Score=75.92 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=85.4
Q ss_pred HHHHHhhcCC-CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhccccc-----------------------------cc
Q 036563 72 KDRLVSKLNP-FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLED-----------------------------DL 121 (288)
Q Consensus 72 ~~~~~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~-----------------------------~~ 121 (288)
...++..... .++..++|..||+|.+.+..+........ |..+. ..
T Consensus 178 Aaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~p----g~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 178 AAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAP----GLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred HHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCC----CccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 3445544444 45678999999999999888765320000 00000 00
Q ss_pred CCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCC--CCCeeEEEeccccccc----cCHHHHHHHHHh
Q 036563 122 QEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFE--DSTMDGYTIAFGIRNV----THIEKALAEAYR 195 (288)
Q Consensus 122 ~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~v~~~~~l~~~----~~~~~~l~~~~~ 195 (288)
....+++|+|+++.+++.|++++...++. ..+.+.++|+.+++.+ .+.+|+|++|..+..- .+...+.+.+-+
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVA-ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGR 332 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCC-cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHH
Confidence 12347999999999999999999999886 6789999999887543 3469999999875322 122334344444
Q ss_pred hcc---CCcEEEEE
Q 036563 196 VLK---RGGRFLCL 206 (288)
Q Consensus 196 ~L~---pgG~l~i~ 206 (288)
.++ +|+.+.++
T Consensus 333 ~lk~~~~g~~~~ll 346 (702)
T PRK11783 333 RLKQQFGGWNAALF 346 (702)
T ss_pred HHHHhCCCCeEEEE
Confidence 443 78777664
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.6e-05 Score=67.35 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=79.0
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
++...+.+++.+...++..|||+|+|+|.++..+++.. .+++++|+++.+.+..++.....
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-------------------~~v~~vE~d~~~~~~L~~~~~~~ 75 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-------------------KRVIAVEIDPDLAKHLKERFASN 75 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-------------------SEEEEEESSHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-------------------CcceeecCcHhHHHHHHHHhhhc
Confidence 45566778888887788999999999999999998884 79999999999999998877633
Q ss_pred CCCCCceEEEEcccccCCCCC---CCeeEEEeccccccccCHHHHHHHHHhhcc
Q 036563 148 GYPDKSLLWVEGDAEALCFED---STMDGYTIAFGIRNVTHIEKALAEAYRVLK 198 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~ 198 (288)
++++++.+|+..+.... +....|+++... ++ ...++.++...-+
T Consensus 76 ----~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~ 122 (262)
T PF00398_consen 76 ----PNVEVINGDFLKWDLYDLLKNQPLLVVGNLPY-NI--SSPILRKLLELYR 122 (262)
T ss_dssp ----SSEEEEES-TTTSCGGGHCSSSEEEEEEEETG-TG--HHHHHHHHHHHGG
T ss_pred ----ccceeeecchhccccHHhhcCCceEEEEEecc-cc--hHHHHHHHhhccc
Confidence 68999999998876443 456677776654 32 2345555555333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.6e-05 Score=70.01 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=85.7
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+.+.+...+.+...++.++||+=||.|.++..+++.. .+|+|+|+++.+++.|++++..++
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~-------------------~~V~gvEi~~~aV~~A~~NA~~n~ 339 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV-------------------KKVHGVEISPEAVEAAQENAAANG 339 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC-------------------CEEEEEecCHHHHHHHHHHHHHcC
Confidence 4445566677777778899999999999999999765 899999999999999999999998
Q ss_pred CCCCceEEEEcccccCCCC---CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 149 YPDKSLLWVEGDAEALCFE---DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+. |++|..++++.+... ...+|.|+....=... ...+++.+. .++|...+++
T Consensus 340 i~--N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~--~~~~lk~l~-~~~p~~IvYV 394 (432)
T COG2265 340 ID--NVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGA--DREVLKQLA-KLKPKRIVYV 394 (432)
T ss_pred CC--cEEEEeCCHHHHhhhccccCCCCEEEECCCCCCC--CHHHHHHHH-hcCCCcEEEE
Confidence 85 699999999887422 3468999875542221 124444444 3567776764
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.4e-06 Score=66.81 Aligned_cols=106 Identities=20% Similarity=0.104 Sum_probs=72.4
Q ss_pred CCCeEEEecCC-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC-CCceEEEEcc
Q 036563 83 PGMKHLDVAGG-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP-DKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~v~~~~~d 160 (288)
.+.+|||+|.| +|..+..++... +...|...|-+...++..++....+... -.++.....+
T Consensus 29 rg~~ilelgggft~laglmia~~a-----------------~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~ 91 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKA-----------------PDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL 91 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeec-----------------CCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH
Confidence 45789999999 466666666555 5789999999999998888765443111 0122222222
Q ss_pred ccc--CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 161 AEA--LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 161 ~~~--~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
... ......+||+|++..++-.-.....+.+.++.+|+|.|.-++
T Consensus 92 ~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 92 IWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred HhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence 211 123456899999999875544567788999999999999665
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.7e-05 Score=68.02 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=81.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+|||+-||+|..+..++.+.+ ...+|+++|+++..++.+++++..++.. ++.+...|+..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~----------------ga~~Vv~nD~n~~Av~~i~~N~~~N~~~--~~~v~~~Da~~ 106 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIE----------------GVREVFANDINPKAVESIKNNVEYNSVE--NIEVPNEDAAN 106 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCC----------------CCCEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEchhHHH
Confidence 35899999999999999998742 1368999999999999999999877653 68889999876
Q ss_pred CC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 164 LC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 164 ~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+- .....||+|.+.. + ..+..++..+.+.++++|.+.+.
T Consensus 107 ~l~~~~~~fDvIdlDP-f---Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 107 VLRYRNRKFHVIDIDP-F---GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred HHHHhCCCCCEEEeCC-C---CCcHHHHHHHHHhcccCCEEEEE
Confidence 52 2235799999866 3 23467899999999999999875
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.6e-05 Score=70.25 Aligned_cols=88 Identities=16% Similarity=0.265 Sum_probs=62.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.+.+.+.+.++..++ +|||+-||.|.++..+++.. .+|+|+|+++++++.|++++..+++
T Consensus 184 ~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-------------------~~V~gvE~~~~av~~A~~Na~~N~i 243 (352)
T PF05958_consen 184 KLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-------------------KKVIGVEIVEEAVEDARENAKLNGI 243 (352)
T ss_dssp HHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-------------------SEEEEEES-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-------------------CeEEEeeCCHHHHHHHHHHHHHcCC
Confidence 344556677776655 89999999999999999886 7999999999999999999999888
Q ss_pred CCCceEEEEcccccCC----------------CCCCCeeEEEeccc
Q 036563 150 PDKSLLWVEGDAEALC----------------FEDSTMDGYTIAFG 179 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~----------------~~~~~~D~v~~~~~ 179 (288)
. |++|..++++++. .....+|+|+....
T Consensus 244 ~--n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 244 D--NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp ---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred C--cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence 4 8999988765541 11235898886544
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.2e-05 Score=62.14 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=77.0
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
..-.+++|||+|+|+|..++..+.... .++...|+.+......+-+...+++ ++.+...
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aGA------------------~~v~a~d~~P~~~~ai~lNa~angv---~i~~~~~ 134 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAGA------------------AEVVAADIDPWLEQAIRLNAAANGV---SILFTHA 134 (218)
T ss_pred cccccceeeecccccChHHHHHHHhhh------------------HHHHhcCCChHHHHHhhcchhhccc---eeEEeec
Confidence 345678999999999999998888753 7889999998888877777777664 4777777
Q ss_pred ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
|... .+..+|++++..++..-+...+.+. +...|+..|..++
T Consensus 135 d~~g---~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 135 DLIG---SPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred cccC---CCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence 7543 4567999999999887666677777 6666666665444
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.9e-05 Score=63.68 Aligned_cols=76 Identities=22% Similarity=0.289 Sum_probs=56.1
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
.|+|+.||.|..+..+++.. ..|+++|+++..++.++.++.-.|+. .++.++.+|+.+..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-------------------~~Viaidid~~~~~~a~hNa~vYGv~-~~I~~i~gD~~~~~ 61 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-------------------DRVIAIDIDPERLECAKHNAEVYGVA-DNIDFICGDFFELL 61 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--------------------EEEEEES-HHHHHHHHHHHHHTT-G-GGEEEEES-HHHHG
T ss_pred EEEEeccCcCHHHHHHHHhC-------------------CeEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEeCCHHHHH
Confidence 69999999999999999986 68999999999999999999998876 79999999987652
Q ss_pred --CCCCC-eeEEEeccccc
Q 036563 166 --FEDST-MDGYTIAFGIR 181 (288)
Q Consensus 166 --~~~~~-~D~v~~~~~l~ 181 (288)
..... +|+|+++....
T Consensus 62 ~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 62 KRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp GGB------SEEEE---BS
T ss_pred hhccccccccEEEECCCCC
Confidence 22222 89999876543
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.8e-05 Score=60.99 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=94.2
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHH----HHHHHH--hhhc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNML----NVGKKR--ALER 147 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~----~~a~~~--~~~~ 147 (288)
+++.+...+++.+|+|+-.|.|.++..+....+ +.+.|+++-+.+... +..+.+ ..+.
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vg----------------p~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~ 102 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVG----------------PKGKVYAYVPAELTKFAKREGPRLNAAAREP 102 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcC----------------CceeEEEecchhhcccccchhhhhhhhhhhh
Confidence 355677788999999999999999999999886 456777665443311 111111 1111
Q ss_pred CCCCCceEEEEcccccCCCCCCCeeEEEeccccccc-------cCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHH
Q 036563 148 GYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV-------THIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELY 220 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~ 220 (288)
.. .|++.+..+...+. +....|+++.+...|.+ ....++...+.+.|||||.+++.|...-...-.+.-
T Consensus 103 ~~--aN~e~~~~~~~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt- 178 (238)
T COG4798 103 VY--ANVEVIGKPLVALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDT- 178 (238)
T ss_pred hh--hhhhhhCCcccccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhh-
Confidence 11 34555544444444 34456666654433222 235778999999999999999887654322111110
Q ss_pred HHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 221 DYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
...+..+...+....+++||+...-..
T Consensus 179 ---------------------------~~~~ri~~a~V~a~veaaGFkl~aeS~ 205 (238)
T COG4798 179 ---------------------------ITLHRIDPAVVIAEVEAAGFKLEAESE 205 (238)
T ss_pred ---------------------------hhhcccChHHHHHHHHhhcceeeeeeh
Confidence 001233778889999999998765443
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.2e-06 Score=62.15 Aligned_cols=100 Identities=16% Similarity=0.279 Sum_probs=44.0
Q ss_pred EEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCC--ceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC-
Q 036563 88 LDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEE--TRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL- 164 (288)
Q Consensus 88 LDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~- 164 (288)
||+|+..|..+..+++... +. .+++++|..+. .+..++.....++. .+++++.++..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~----------------~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~-~~~~~~~g~s~~~l 62 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALR----------------DNGRGKLYSVDPFPG-DEQAQEIIKKAGLS-DRVEFIQGDSPDFL 62 (106)
T ss_dssp ------------------------------------------EEEESS-------------GGG--BTEEEEES-THHHH
T ss_pred Ccccccccccccccccccc----------------ccccCCEEEEECCCc-ccccchhhhhcCCC-CeEEEEEcCcHHHH
Confidence 6899999999999888764 22 37999999884 22222233223333 5799999997653
Q ss_pred -CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 165 -CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 165 -~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.++.+++|+++.... |..+.....++.+.+.|+|||.+++-
T Consensus 63 ~~~~~~~~dli~iDg~-H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 63 PSLPDGPIDLIFIDGD-HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp HHHHH--EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHcCCCCEEEEEECCC-CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 233468999998764 33345677899999999999998864
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00018 Score=69.29 Aligned_cols=88 Identities=18% Similarity=0.108 Sum_probs=57.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
...+|||.|||+|.+...+++........ .. -...++++|+++..+..++.++...+. ....+...|..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~-------~~--~~~~i~g~DId~~a~~~a~~~l~~~~~--~~~~i~~~d~l 99 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYF-------KE--VELNIYFADIDKTLLKRAKKLLGEFAL--LEINVINFNSL 99 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCc-------cc--ceeeeeeechhHHHHHHHHHHHhhcCC--CCceeeecccc
Confidence 34689999999999999998876310000 00 126789999999999999988765531 13344444432
Q ss_pred cC-----CCCCCCeeEEEeccccc
Q 036563 163 AL-----CFEDSTMDGYTIAFGIR 181 (288)
Q Consensus 163 ~~-----~~~~~~~D~v~~~~~l~ 181 (288)
.. ....+.||+|++|....
T Consensus 100 ~~~~~~~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 100 SYVLLNIESYLDLFDIVITNPPYG 123 (524)
T ss_pred cccccccccccCcccEEEeCCCcc
Confidence 21 11124799999988754
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00027 Score=57.53 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=74.1
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc-c
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG-D 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~-d 160 (288)
.|+.+|||+||.+|.++..+.+..+ |++.+.|+|+-.-. . . +.+.++.+ |
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~----------------p~g~v~gVDllh~~---------p--~--~Ga~~i~~~d 118 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVN----------------PNGMVLGVDLLHIE---------P--P--EGATIIQGND 118 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhC----------------CCceEEEEeeeecc---------C--C--CCcccccccc
Confidence 5688999999999999999999986 78999999974311 0 0 24445554 5
Q ss_pred cccC--------CCCCCCeeEEEeccccccc----cCH-------HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHH
Q 036563 161 AEAL--------CFEDSTMDGYTIAFGIRNV----THI-------EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYD 221 (288)
Q Consensus 161 ~~~~--------~~~~~~~D~v~~~~~l~~~----~~~-------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 221 (288)
+.+. ..++...|+|++...-... .|- ..++.-....+.|+|.++|--+...+...+.....
T Consensus 119 vtdp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~ 198 (232)
T KOG4589|consen 119 VTDPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQ 198 (232)
T ss_pred cCCHHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHH
Confidence 5443 2566789999987653211 121 22344445677899999997777665555544333
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00037 Score=62.34 Aligned_cols=106 Identities=17% Similarity=0.205 Sum_probs=78.7
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHh--h---hcCCCCCceEEEE
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRA--L---ERGYPDKSLLWVE 158 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~--~---~~~~~~~~v~~~~ 158 (288)
..++|-+|.|.|.-+..+.+.= ...+++-+|.+|.|++.++++. . +....++++.++.
T Consensus 290 a~~vLvlGGGDGLAlRellkyP-----------------~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~ 352 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYP-----------------QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN 352 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCC-----------------CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe
Confidence 3479999999999999888862 2579999999999999998442 2 2234468999999
Q ss_pred cccccC-CCCCCCeeEEEeccccccccCH-----HHHHHHHHhhccCCcEEEEE
Q 036563 159 GDAEAL-CFEDSTMDGYTIAFGIRNVTHI-----EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 159 ~d~~~~-~~~~~~~D~v~~~~~l~~~~~~-----~~~l~~~~~~L~pgG~l~i~ 206 (288)
.|+.++ .-..+.||.|+....=..-+.. ..+..-+.+.|+++|.+++.
T Consensus 353 dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 353 DDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred ccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 998775 2334589999976542221111 45677889999999999874
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00033 Score=55.30 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=68.7
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC--CCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG--YPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~v~~~~~ 159 (288)
.+..+|+|+|||.|.++..++..+... .++.+++++|.++...+.+.++....+ +. .++.+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~-------------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 89 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNS-------------SPNLRVLGIDCNESLVESAQKRAQKLGSDLE-KRLSFIQG 89 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhc-------------CCCCeEEEEECCcHHHHHHHHHHHHhcchhh-ccchhhcc
Confidence 556799999999999999999944210 046899999999999999988887765 32 45666666
Q ss_pred ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEE
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
+...... ....++++..++-... -..+|+...+ ++..++
T Consensus 90 ~~~~~~~-~~~~~~~vgLHaCG~L--s~~~l~~~~~---~~~~~l 128 (141)
T PF13679_consen 90 DIADESS-SDPPDILVGLHACGDL--SDRALRLFIR---PNARFL 128 (141)
T ss_pred chhhhcc-cCCCeEEEEeecccch--HHHHHHHHHH---cCCCEE
Confidence 5543321 4457777775554333 2445555554 444443
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00017 Score=58.69 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=77.6
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
..+.|+|+|+|.++...++.. .+|++++.+|.....+++++.-.+. .+++++.+|+...
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A-------------------~rViAiE~dPk~a~~a~eN~~v~g~--~n~evv~gDA~~y 92 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA-------------------ERVIAIEKDPKRARLAEENLHVPGD--VNWEVVVGDARDY 92 (252)
T ss_pred hceeeccCCcchHHHHHHhhh-------------------ceEEEEecCcHHHHHhhhcCCCCCC--cceEEEecccccc
Confidence 689999999999998888874 7999999999999999888755554 5899999999888
Q ss_pred CCCCCCeeEEEeccccccc--cCHHHHHHHHHhhccCCcEEE
Q 036563 165 CFEDSTMDGYTIAFGIRNV--THIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 165 ~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~ 204 (288)
.+ +..|+|+|-..=..+ .....++..+...||.++.++
T Consensus 93 ~f--e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 93 DF--ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred cc--cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 77 358999985542211 233567888888999999887
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00028 Score=64.16 Aligned_cols=115 Identities=22% Similarity=0.269 Sum_probs=90.0
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.+.++++.||||.++.+|.-+.+++.... ..+.|++.|.+.+.+.....++...|+. +....
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMk----------------n~G~I~AnD~n~~r~~~l~~n~~rlGv~--ntiv~ 297 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMK----------------NTGVIFANDSNENRLKSLKANLHRLGVT--NTIVS 297 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHc----------------CCceEEecccchHHHHHHHHHHHHhCCC--ceEEE
Confidence 44578899999999999998888888775 5689999999999999999999998874 77778
Q ss_pred EcccccCC---CCCCCeeEEEecccccc--c----------c---C-------HHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 158 EGDAEALC---FEDSTMDGYTIAFGIRN--V----------T---H-------IEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 158 ~~d~~~~~---~~~~~~D~v~~~~~l~~--~----------~---~-------~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
..|...++ ++. +||-|++...... + . + -.++|.....++++||+|+...++..
T Consensus 298 n~D~~ef~~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 298 NYDGREFPEKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred ccCcccccccccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 88877664 444 8999997554333 1 0 1 14568888899999999997666543
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0017 Score=58.26 Aligned_cols=87 Identities=14% Similarity=0.202 Sum_probs=64.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.+++++||+||++|.++..+++.. .+|+++|..+ |-.. +... ++|.....|.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG-------------------~~V~AVD~g~-l~~~----L~~~----~~V~h~~~d~ 261 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG-------------------MFVTAVDNGP-MAQS----LMDT----GQVEHLRADG 261 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC-------------------CEEEEEechh-cCHh----hhCC----CCEEEEeccC
Confidence 568899999999999999999873 7999999654 2222 2122 6888888887
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG 200 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg 200 (288)
.....+.+.+|.++|..+ ..+.++.+-+.+.|..|
T Consensus 262 fr~~p~~~~vDwvVcDmv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 262 FKFRPPRKNVDWLVCDMV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred cccCCCCCCCCEEEEecc----cCHHHHHHHHHHHHhcC
Confidence 655323567999999776 34667777777777665
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0051 Score=54.45 Aligned_cols=83 Identities=10% Similarity=0.073 Sum_probs=48.7
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc-CCCCCceEEEEcccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER-GYPDKSLLWVEGDAE 162 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~v~~~~~d~~ 162 (288)
..++||||+|...+-..+.... .+.+++|+|+++..++.|++.+..+ ++. .++++....-.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-----------------~~W~fvaTdID~~sl~~A~~nv~~N~~L~-~~I~l~~~~~~ 164 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-----------------YGWSFVATDIDPKSLESARENVERNPNLE-SRIELRKQKNP 164 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-----------------H--EEEEEES-HHHHHHHHHHHHHT-T-T-TTEEEEE--ST
T ss_pred ceEeecCCccHHHHHHHHhhhh-----------------cCCeEEEecCCHHHHHHHHHHHHhccccc-cceEEEEcCCc
Confidence 4589999999876543333332 2499999999999999999999988 776 78888765322
Q ss_pred c-----CCCCCCCeeEEEecccccccc
Q 036563 163 A-----LCFEDSTMDGYTIAFGIRNVT 184 (288)
Q Consensus 163 ~-----~~~~~~~~D~v~~~~~l~~~~ 184 (288)
. +..+.+.||+.+|+..++...
T Consensus 165 ~~i~~~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 165 DNIFDGIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp -SSTTTSTT--S-EEEEEE-----SS-
T ss_pred cccchhhhcccceeeEEecCCccccCh
Confidence 1 122346899999999988654
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00082 Score=56.97 Aligned_cols=143 Identities=17% Similarity=0.197 Sum_probs=92.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce-EEEEcc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL-LWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v-~~~~~d 160 (288)
.++..+||+|+.||.++..+++.. ..+|+++|...+.+..--+.- +++ .+...+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g------------------Ak~VyavDVG~~Ql~~kLR~d-------~rV~~~E~tN 132 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG------------------AKHVYAVDVGYGQLHWKLRND-------PRVIVLERTN 132 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC------------------CcEEEEEEccCCccCHhHhcC-------CcEEEEecCC
Confidence 567889999999999999999984 389999999887665433221 344 345566
Q ss_pred cccCC---CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccC
Q 036563 161 AEALC---FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAG 237 (288)
Q Consensus 161 ~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (288)
+..+. +. +..|++++.-++- ....+|..+..+++|++.++. ...|+...-+.. . . .+.++..
T Consensus 133 ~r~l~~~~~~-~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~--LvKPQFEagr~~---v-----~-kkGvv~d 197 (245)
T COG1189 133 VRYLTPEDFT-EKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVL--LVKPQFEAGREQ---V-----G-KKGVVRD 197 (245)
T ss_pred hhhCCHHHcc-cCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEE--Eecchhhhhhhh---c-----C-cCceecC
Confidence 66552 22 3688999877654 357789999999999998876 333322211111 1 1 1111111
Q ss_pred CCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 238 DRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
+..+. .-..++.+.+++.||++..+..
T Consensus 198 -~~~~~---------~v~~~i~~~~~~~g~~~~gl~~ 224 (245)
T COG1189 198 -PKLHA---------EVLSKIENFAKELGFQVKGLIK 224 (245)
T ss_pred -cchHH---------HHHHHHHHHHhhcCcEEeeeEc
Confidence 11111 1356788899999999988763
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00053 Score=53.70 Aligned_cols=82 Identities=22% Similarity=0.333 Sum_probs=59.4
Q ss_pred eEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC-CCC-CCeeEEEecccccccc-----------CHHHHHHH
Q 036563 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC-FED-STMDGYTIAFGIRNVT-----------HIEKALAE 192 (288)
Q Consensus 126 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~-~~~-~~~D~v~~~~~l~~~~-----------~~~~~l~~ 192 (288)
+|+++|+.+.+++..++++.+.++. .++.++..+-+.+. +.+ +++|+++.|.. +++ ....+|+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE-DRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G-SGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC-CcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHH
Confidence 5899999999999999999998876 68999998877764 223 47999987765 232 12568999
Q ss_pred HHhhccCCcEEEEEeccC
Q 036563 193 AYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 193 ~~~~L~pgG~l~i~~~~~ 210 (288)
+.++|+|||.+.++-...
T Consensus 78 al~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 78 ALELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHHEEEEEEEEEEE--S
T ss_pred HHHhhccCCEEEEEEeCC
Confidence 999999999999876543
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0055 Score=52.25 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=78.7
Q ss_pred hhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 67 LHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 67 ~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
+.+....+++.... +...+|+|+|+..-+..+++.+... + .-.+++.+|++...+....+.+..
T Consensus 65 Il~~~a~Eia~~~g---~~~lveLGsGns~Ktr~Llda~~~~-----------~--~~~ryvpiDv~a~iL~~ta~ai~~ 128 (321)
T COG4301 65 ILQARAAEIASITG---ACTLVELGSGNSTKTRILLDALAHR-----------G--SLLRYVPIDVSASILRATATAILR 128 (321)
T ss_pred HHHHHHHHHHHhhC---cceEEEecCCccHHHHHHHHHhhhc-----------C--CcceeeeecccHHHHHHHHHHHHH
Confidence 33444445555444 5689999999999888888876310 0 127899999999998776665543
Q ss_pred cCCCCCceEEEEcccccC-C-CCC-CCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEE
Q 036563 147 RGYPDKSLLWVEGDAEAL-C-FED-STMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 147 ~~~~~~~v~~~~~d~~~~-~-~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.-.. -.+.-+.+|.+.. . .+. +.-=.++....+.++. +...+|..+...|+||-++++.
T Consensus 129 ~y~~-l~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 129 EYPG-LEVNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred hCCC-CeEeehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 3211 2244455565421 1 222 2334455566677664 4567999999999999999873
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00038 Score=61.83 Aligned_cols=90 Identities=20% Similarity=0.307 Sum_probs=72.7
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
+.+++++.+...+++.++|.-+|.|..+..+++..+ .++++++|.++.+++.+++++....
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~-----------------~g~vigiD~D~~Al~~ak~~L~~~~-- 68 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLG-----------------TGRLIGIDRDPQAIAFAKERLSDFE-- 68 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCC-----------------CCEEEEEcCCHHHHHHHHHHHhhcC--
Confidence 346777888878888999999999999999998863 4899999999999999999876542
Q ss_pred CCceEEEEcccccCC-----CCCCCeeEEEecccc
Q 036563 151 DKSLLWVEGDAEALC-----FEDSTMDGYTIAFGI 180 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~-----~~~~~~D~v~~~~~l 180 (288)
.++.++.+++.++. ....++|.|++...+
T Consensus 69 -~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 69 -GRVVLIHDNFANFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred -CcEEEEeCCHHHHHHHHHhcCCCcccEEEEeccC
Confidence 58999999887752 233568998886653
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0016 Score=54.53 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=76.5
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.++.||||--+.+...+.+.. +...+++.|+++..++.|.+.+...++. ++++...+|...
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~-----------------~~~~~va~eV~~gpl~~a~~~v~~~~l~-~~i~vr~~dgl~ 78 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNN-----------------PASTAVAGEVVPGPLESAIRNVKKNNLS-ERIDVRLGDGLA 78 (226)
T ss_pred CCceeeccCchhHhHHHHHhcC-----------------CcceEEEeecccCHHHHHHHHHHhcCCc-ceEEEeccCCcc
Confidence 4569999999999999999987 4688999999999999999999998887 788888888754
Q ss_pred CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 164 LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
.-.+++.+|.|+....=. .-...+|++-...|+.=-++++
T Consensus 79 ~l~~~d~~d~ivIAGMGG--~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 79 VLELEDEIDVIVIAGMGG--TLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred ccCccCCcCEEEEeCCcH--HHHHHHHHHhhhhhcCcceEEE
Confidence 334455799988655411 1245566666666664344543
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00024 Score=59.25 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=73.5
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
...|+|.-||.|..+...+... ..|+++|++|.-+.-|+.+++-.|++ .++.|+++|+.+
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~-------------------~~VisIdiDPikIa~AkhNaeiYGI~-~rItFI~GD~ld 154 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQG-------------------PYVIAIDIDPVKIACARHNAEVYGVP-DRITFICGDFLD 154 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhC-------------------CeEEEEeccHHHHHHHhccceeecCC-ceeEEEechHHH
Confidence 3579999999998888887774 78999999999999999999999999 699999999866
Q ss_pred C----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCc
Q 036563 164 L----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGG 201 (288)
Q Consensus 164 ~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG 201 (288)
+ .+....+|+|+.........-...-+-.+...+.|.|
T Consensus 155 ~~~~lq~~K~~~~~vf~sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 155 LASKLKADKIKYDCVFLSPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred HHHHHhhhhheeeeeecCCCCCCcchhhhhhhhhhhhcchhH
Confidence 4 3444457788876654443333334445555555553
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00029 Score=55.44 Aligned_cols=59 Identities=14% Similarity=0.248 Sum_probs=48.8
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
.++|+|||.|.++..++... +..+++++|+++.+.+.+++++...+++ ++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-----------------~~~~v~~~E~~~~~~~~l~~~~~~n~~~--~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-----------------AEGRVIAFEPLPDAYEILEENVKLNNLP--NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-----------------CCCEEEEEecCHHHHHHHHHHHHHcCCC--cEEEEEeeeeC
Confidence 48999999999999988875 3568999999999999999998877663 57777766543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00027 Score=65.89 Aligned_cols=73 Identities=23% Similarity=0.319 Sum_probs=62.5
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
+...+-+.+..+.+..++|+.||||.++..+++.. .+|+|+++++..++.|+.+...+++.
T Consensus 371 Lys~i~e~~~l~~~k~llDv~CGTG~iglala~~~-------------------~~ViGvEi~~~aV~dA~~nA~~Ngis 431 (534)
T KOG2187|consen 371 LYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV-------------------KRVIGVEISPDAVEDAEKNAQINGIS 431 (534)
T ss_pred HHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc-------------------cceeeeecChhhcchhhhcchhcCcc
Confidence 33456667777778889999999999999999886 79999999999999999999998885
Q ss_pred CCceEEEEcccccC
Q 036563 151 DKSLLWVEGDAEAL 164 (288)
Q Consensus 151 ~~~v~~~~~d~~~~ 164 (288)
|.+|+++-++++
T Consensus 432 --Na~Fi~gqaE~~ 443 (534)
T KOG2187|consen 432 --NATFIVGQAEDL 443 (534)
T ss_pred --ceeeeecchhhc
Confidence 999999955554
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.043 Score=46.88 Aligned_cols=107 Identities=19% Similarity=0.130 Sum_probs=61.9
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
-.+++||-+|=..- .+.+++-.. ...+++++|+++..++..++...+.++ +++....|+
T Consensus 43 L~gk~il~lGDDDL-tSlA~al~~-----------------~~~~I~VvDiDeRll~fI~~~a~~~gl---~i~~~~~Dl 101 (243)
T PF01861_consen 43 LEGKRILFLGDDDL-TSLALALTG-----------------LPKRITVVDIDERLLDFINRVAEEEGL---PIEAVHYDL 101 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT-------------------SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---T
T ss_pred ccCCEEEEEcCCcH-HHHHHHhhC-----------------CCCeEEEEEcCHHHHHHHHHHHHHcCC---ceEEEEecc
Confidence 35789999984432 333333222 248999999999999999999988886 389999998
Q ss_pred ccC-C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 162 EAL-C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 162 ~~~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.+. | .-.++||+++....- -.....-++......||..|......+++
T Consensus 102 R~~LP~~~~~~fD~f~TDPPy-T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~ 151 (243)
T PF01861_consen 102 RDPLPEELRGKFDVFFTDPPY-TPEGLKLFLSRGIEALKGEGCAGYFGFTH 151 (243)
T ss_dssp TS---TTTSS-BSEEEE---S-SHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred cccCCHHHhcCCCEEEeCCCC-CHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 763 2 224789999986652 33456778999999999766433334444
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.015 Score=53.47 Aligned_cols=126 Identities=15% Similarity=0.219 Sum_probs=72.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC---------C--CCC
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG---------Y--PDK 152 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---------~--~~~ 152 (288)
..+|+|+|||+|..+..+....=..-..-++. ....+|...++.-|.-.+.....-+.+.... + ...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~--~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~ 141 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYES--AGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGH 141 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhh--cCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCC
Confidence 56899999999988776655431000000000 0122356788888876555544444332100 0 001
Q ss_pred ceEEEEc---ccccCCCCCCCeeEEEeccccccccC--------------------------------------HHHHHH
Q 036563 153 SLLWVEG---DAEALCFEDSTMDGYTIAFGIRNVTH--------------------------------------IEKALA 191 (288)
Q Consensus 153 ~v~~~~~---d~~~~~~~~~~~D~v~~~~~l~~~~~--------------------------------------~~~~l~ 191 (288)
+.-|..+ .+-.--+|.++.+++++..++|++.. ...+|+
T Consensus 142 ~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~ 221 (386)
T PLN02668 142 RSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLR 221 (386)
T ss_pred CceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1122222 22222478899999999999987752 122466
Q ss_pred HHHhhccCCcEEEEEeccCC
Q 036563 192 EAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 192 ~~~~~L~pgG~l~i~~~~~~ 211 (288)
.-.+-|.|||.+++.-...+
T Consensus 222 ~Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 222 ARAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHHHhccCcEEEEEEecCC
Confidence 66678899999998765553
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0017 Score=57.87 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=73.0
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+....+...+.+|||+|.|+|..+.++....+ .-..++.++.|+...+...... ..-.+ .
T Consensus 103 ~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~P----------------dl~sa~ile~sp~lrkV~~tl~-~nv~t-~ 164 (484)
T COG5459 103 DELQKRVPDFAPQSILDVGAGPGTGLWALNDIWP----------------DLKSAVILEASPALRKVGDTLA-ENVST-E 164 (484)
T ss_pred HHHHHhCCCcCcchhhccCCCCchhhhhhcccCC----------------CchhhhhhccCHHHHHHHHHHH-hhccc-c
Confidence 3444444555567899999999988777666553 1245666777776555554332 22111 1
Q ss_pred ceEEEEccccc--CCCC-CCCeeEEEecccccccc---CHHHHHHHHHhhccCCcEEEEEeccCCCh
Q 036563 153 SLLWVEGDAEA--LCFE-DSTMDGYTIAFGIRNVT---HIEKALAEAYRVLKRGGRFLCLELSHVDI 213 (288)
Q Consensus 153 ~v~~~~~d~~~--~~~~-~~~~D~v~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 213 (288)
...+-..|+.. ++++ .+.|+++++.+-+-+.. .....++.+..++.|||.++++|...|..
T Consensus 165 ~td~r~s~vt~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 165 KTDWRASDVTEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred cCCCCCCccchhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 22222223221 1222 34577776655443332 23458999999999999999999888754
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.022 Score=51.70 Aligned_cols=181 Identities=17% Similarity=0.167 Sum_probs=86.9
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhccccc------ccCCCceEEEEeCChhHHHHHHHHhhhcC--CC-C
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLED------DLQEETRIYVCDINPNMLNVGKKRALERG--YP-D 151 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~-~ 151 (288)
.....+|+|+||.+|..+..+....- +.+... .-+|.-.++.-|.=.+.-...-+.+.... +. .
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii-------~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~ 86 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNII-------DAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKF 86 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHH-------HHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHT
T ss_pred CCCceEEEecCCCCCccHHHHHHHHH-------HHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCC
Confidence 34456899999999998888777541 111111 23345688999975554444433332220 00 0
Q ss_pred Cce--EEEEcccccCCCCCCCeeEEEeccccccccCH---------------------------------------HHHH
Q 036563 152 KSL--LWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI---------------------------------------EKAL 190 (288)
Q Consensus 152 ~~v--~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~---------------------------------------~~~l 190 (288)
+++ .-+.+.+-.--+|.++.|++++..++|++... ..+|
T Consensus 87 ~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL 166 (334)
T PF03492_consen 87 RNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFL 166 (334)
T ss_dssp TSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 122 22334444445889999999999998877420 2246
Q ss_pred HHHHhhccCCcEEEEEeccCCCh--------HHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHH
Q 036563 191 AEAYRVLKRGGRFLCLELSHVDI--------PVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMI 262 (288)
Q Consensus 191 ~~~~~~L~pgG~l~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 262 (288)
+.-.+-|+|||.+++.-...++. ..+..+...+..- -.-|.+-...-+.+. --...++.+++++.+
T Consensus 167 ~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dM--v~eGlI~~ek~dsfn----iP~Y~ps~eEv~~~I 240 (334)
T PF03492_consen 167 KARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDM--VAEGLISEEKVDSFN----IPIYFPSPEEVRAII 240 (334)
T ss_dssp HHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHH--HHTTSS-HCCCCTG------SBB---HHHHHHHH
T ss_pred HHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHH--HHcCCcCHHHhhcee----CCccCCCHHHHHHHH
Confidence 66677889999999876655431 1222222222100 001111111111110 112356899999999
Q ss_pred HHcC-CcEEEEEE
Q 036563 263 SDAG-FQKVEYEN 274 (288)
Q Consensus 263 ~~aG-f~~v~~~~ 274 (288)
++.| |++..++.
T Consensus 241 ~~~gsF~I~~le~ 253 (334)
T PF03492_consen 241 EEEGSFEIEKLEL 253 (334)
T ss_dssp HHHTSEEEEEEEE
T ss_pred hcCCCEEEEEEEE
Confidence 9987 55544443
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0018 Score=60.21 Aligned_cols=103 Identities=21% Similarity=0.294 Sum_probs=82.9
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.+++.+|||.-.+...+.+.. ...++.+|+|+..++....+-... .+-..+...|+..+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G------------------~~dI~~iD~S~V~V~~m~~~~~~~---~~~~~~~~~d~~~l 108 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG------------------FEDITNIDSSSVVVAAMQVRNAKE---RPEMQMVEMDMDQL 108 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC------------------CCCceeccccHHHHHHHHhccccC---CcceEEEEecchhc
Confidence 489999999999888887764 378999999998887766554211 15678899999999
Q ss_pred CCCCCCeeEEEeccccccccC----------HHHHHHHHHhhccCCcEEEEEec
Q 036563 165 CFEDSTMDGYTIAFGIRNVTH----------IEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 165 ~~~~~~~D~v~~~~~l~~~~~----------~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+++++||+|+.-..++++.. ....+.+++++|++||+.+.+.+
T Consensus 109 ~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 109 VFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 999999999999998876631 23468899999999999887665
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0088 Score=57.04 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=97.3
Q ss_pred HHHHHHHhHhhHHHhhhhhhhh--hhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccc
Q 036563 43 QLVSNVFSSVAKNYDLMNDLMS--GGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120 (288)
Q Consensus 43 ~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~ 120 (288)
..+..+|+..-+.|......-. .-..+...+.+++.+.+.+..+|.|.+||+|.+.....+.+.. +
T Consensus 144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~------------~ 211 (489)
T COG0286 144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKR------------H 211 (489)
T ss_pred cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHh------------h
Confidence 3455566666655553322110 1112455567788887767779999999999999888888741 0
Q ss_pred cCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC-C----CCCCeeEEEeccccc--ccc---------
Q 036563 121 LQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC-F----EDSTMDGYTIAFGIR--NVT--------- 184 (288)
Q Consensus 121 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~-~----~~~~~D~v~~~~~l~--~~~--------- 184 (288)
+ ....++|.|+++.....++.++--++.. .++....+|-..-+ . ..+.||.|+++..+. .+.
T Consensus 212 ~-~~~~~yGqE~~~~t~~l~~mN~~lhgi~-~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~ 289 (489)
T COG0286 212 Q-DEIFIYGQEINDTTYRLAKMNLILHGIE-GDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQD 289 (489)
T ss_pred c-cceeEEEEeCCHHHHHHHHHHHHHhCCC-ccccccccccccCCcccccCCccceeEEEeCCCCCcccccccccccccc
Confidence 0 0367999999999999999998777654 13344445432222 2 335699999977653 000
Q ss_pred -------------CH-HHHHHHHHhhccCCcEEEEE
Q 036563 185 -------------HI-EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 185 -------------~~-~~~l~~~~~~L~pgG~l~i~ 206 (288)
.. ..+++++...|+|+|+..++
T Consensus 290 ~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 290 ERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred ccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 01 55789999999998865543
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.013 Score=51.65 Aligned_cols=82 Identities=18% Similarity=0.251 Sum_probs=51.7
Q ss_pred CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHH
Q 036563 169 STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVES 248 (288)
Q Consensus 169 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (288)
+.||+|+..+-+.--.+....|..+..+|+|||+.+-+.... +...+--|. ..+..
T Consensus 258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLl--------------YHF~d~~g~----~~~~s------ 313 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLL--------------YHFEDTHGV----ENEMS------ 313 (369)
T ss_pred CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEecccee--------------eeccCCCCC----ccccc------
Confidence 469999887766665678889999999999999988421100 000000000 00000
Q ss_pred HhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 249 VRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 249 ~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
+ =++.+++..+.+..||+++..+.+.
T Consensus 314 i--Els~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 314 I--ELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred c--cccHHHHHHHHHhcCcEEEEeeeee
Confidence 0 1367889899999999998876443
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=55.87 Aligned_cols=107 Identities=19% Similarity=0.192 Sum_probs=74.3
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
+.++.+|+.+||-+|+++|....++.+..+ |...|++++.|...=.......... +|+-.
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVG----------------peG~VYAVEfs~rsGRdL~nmAkkR----tNiiP 209 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVG----------------PEGCVYAVEFSHRSGRDLINMAKKR----TNIIP 209 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccC----------------CCceEEEEEecccchHHHHHHhhcc----CCcee
Confidence 355678999999999999999999999887 7889999998875433222222221 67888
Q ss_pred EEcccccCC---CCCCCeeEEEeccccccccCHH-HHHHHHHhhccCCcEEEEE
Q 036563 157 VEGDAEALC---FEDSTMDGYTIAFGIRNVTHIE-KALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 157 ~~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i~ 206 (288)
+.-|+.-.. ..-.-.|+|++.-. . +|.. .+.-+....||+||.+++.
T Consensus 210 IiEDArhP~KYRmlVgmVDvIFaDva--q-pdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 210 IIEDARHPAKYRMLVGMVDVIFADVA--Q-PDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeccCCCchheeeeeeeEEEEeccCC--C-chhhhhhhhhhhhhhccCCeEEEE
Confidence 888876432 22345788876443 1 2322 2344778999999999863
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00015 Score=57.14 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=38.3
Q ss_pred cCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEE
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
...|.+++.|+|++-++++|+. +-..++++|+++|||||++-|.
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 3468889999999999999986 4567899999999999999864
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0015 Score=54.94 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=74.0
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.|++|+++.+|.++..+.+.+.. -++..+....+++++|+.+-. +. +.|.-+++|+...
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~--------~~~~~~~~~~kIVaVDLQ~Ma-----------PI--~GV~qlq~DIT~~ 101 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYK--------PLPSSGERDKKIVAVDLQPMA-----------PI--EGVIQLQGDITSA 101 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhc--------cCCCcchhhccEEEEecccCC-----------cc--CceEEeecccCCH
Confidence 58999999999999999888631 001111122359999986532 12 4677788998764
Q ss_pred C--------CCCCCeeEEEeccc-----cccccCH------HHHHHHHHhhccCCcEEEEEeccCCChHHH
Q 036563 165 C--------FEDSTMDGYTIAFG-----IRNVTHI------EKALAEAYRVLKRGGRFLCLELSHVDIPVF 216 (288)
Q Consensus 165 ~--------~~~~~~D~v~~~~~-----l~~~~~~------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~ 216 (288)
. |..++.|+|+|..+ +|.+++. ..+|.-...+|+|||.|+.--+-..+.+.+
T Consensus 102 stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslL 172 (294)
T KOG1099|consen 102 STAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLL 172 (294)
T ss_pred hHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHH
Confidence 2 66778999999876 4444332 345667778999999998544444444433
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0072 Score=53.12 Aligned_cols=90 Identities=23% Similarity=0.338 Sum_probs=73.6
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
+.++.++.+...+++..+|.--|.|..+..+++.++ +.++++++|.++.+++.|++.+...+
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~----------------~~~~li~~DrD~~Ai~~a~~~l~~~~-- 72 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLP----------------DLGRLIGIDRDPQAIAIAKERLKEFD-- 72 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCC----------------CCCeEEEEcCCHHHHHHHHHHhhccC--
Confidence 446778888888899999999999999999999985 46789999999999999999987754
Q ss_pred CCceEEEEcccccCC-----CCCCCeeEEEeccc
Q 036563 151 DKSLLWVEGDAEALC-----FEDSTMDGYTIAFG 179 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~-----~~~~~~D~v~~~~~ 179 (288)
+++.++.+.+.++. ...+++|-|+....
T Consensus 73 -~r~~~v~~~F~~l~~~l~~~~i~~vDGiL~DLG 105 (314)
T COG0275 73 -GRVTLVHGNFANLAEALKELGIGKVDGILLDLG 105 (314)
T ss_pred -CcEEEEeCcHHHHHHHHHhcCCCceeEEEEecc
Confidence 68999999877652 22456777776443
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.012 Score=49.30 Aligned_cols=106 Identities=9% Similarity=0.057 Sum_probs=57.9
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+..|+|+|.-.|..+..++..+..- .+.++|+++|++..... ++.....+.. ++++++++|..+
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~-------------~~~~~VigiDIdir~~~--~~a~e~hp~~-~rI~~i~Gds~d 96 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELL-------------GGKGKVIGIDIDIRPHN--RKAIESHPMS-PRITFIQGDSID 96 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHT-------------T---EEEEEES-GTT----S-GGGG-----TTEEEEES-SSS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHh-------------CCCceEEEEeCCcchhc--hHHHhhcccc-CceEEEECCCCC
Confidence 4689999999999888887655310 13589999999544322 2233333333 689999999865
Q ss_pred CC-------C-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 164 LC-------F-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 164 ~~-------~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.. . ......+|+. .+-|...+..+.|+....++++|+++++-
T Consensus 97 ~~~~~~v~~~~~~~~~vlVil-Ds~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 97 PEIVDQVRELASPPHPVLVIL-DSSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp THHHHTSGSS----SSEEEEE-SS----SSHHHHHHHHHHT--TT-EEEET
T ss_pred HHHHHHHHHhhccCCceEEEE-CCCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 42 1 1123345543 33344567888899999999999999873
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0037 Score=55.61 Aligned_cols=88 Identities=24% Similarity=0.386 Sum_probs=63.9
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+++++.+...+++.+||.-.|.|..+..+++..+ .++++++|.++.+++.+++++....
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~-----------------~~~li~~DrD~~a~~~a~~~l~~~~--- 68 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLP-----------------NGRLIGIDRDPEALERAKERLKKFD--- 68 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-T-----------------T-EEEEEES-HHHHHHHHCCTCCCC---
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCC-----------------CCeEEEecCCHHHHHHHHHHHhhcc---
Confidence 35677888888889999999999999999999983 5999999999999999988876542
Q ss_pred CceEEEEcccccCC-----C-CCCCeeEEEeccc
Q 036563 152 KSLLWVEGDAEALC-----F-EDSTMDGYTIAFG 179 (288)
Q Consensus 152 ~~v~~~~~d~~~~~-----~-~~~~~D~v~~~~~ 179 (288)
+++.++.+++.++. . ...++|.|++...
T Consensus 69 ~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 69 DRFIFIHGNFSNLDEYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp TTEEEEES-GGGHHHHHHHTTTTS-EEEEEEE-S
T ss_pred ceEEEEeccHHHHHHHHHHccCCCccCEEEEccc
Confidence 68999999988762 2 3357888887544
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.025 Score=51.11 Aligned_cols=126 Identities=24% Similarity=0.314 Sum_probs=82.9
Q ss_pred HHHHHHhhc-----CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh
Q 036563 71 WKDRLVSKL-----NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL 145 (288)
Q Consensus 71 ~~~~~~~~l-----~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 145 (288)
+++..+.++ ..+|+.+|||+++.+|.-+..+++..-.. +..+.+++-|.++..+........
T Consensus 138 ~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~-------------~~~g~vvaND~d~~R~~~L~~q~~ 204 (375)
T KOG2198|consen 138 YRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKD-------------PTRGYVVANDVDPKRLNMLVHQLK 204 (375)
T ss_pred hhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcC-------------CCCCeeEecccCHHHHHHHHHHHh
Confidence 344455544 45789999999999999998888875210 012478999999988887777764
Q ss_pred hcCCCCCceEEEEcccccCC---------CCCCCeeEEEeccc------cccccCH-----------------HHHHHHH
Q 036563 146 ERGYPDKSLLWVEGDAEALC---------FEDSTMDGYTIAFG------IRNVTHI-----------------EKALAEA 193 (288)
Q Consensus 146 ~~~~~~~~v~~~~~d~~~~~---------~~~~~~D~v~~~~~------l~~~~~~-----------------~~~l~~~ 193 (288)
..+ .++..+...|+..++ .....||-|++.-. +.+.++. .++|.+.
T Consensus 205 ~l~--~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rg 282 (375)
T KOG2198|consen 205 RLP--SPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRG 282 (375)
T ss_pred ccC--CcceeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHH
Confidence 332 245555555544332 12346999988433 1111111 3468889
Q ss_pred HhhccCCcEEEEEeccCC
Q 036563 194 YRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 194 ~~~L~pgG~l~i~~~~~~ 211 (288)
.++||+||.++...++..
T Consensus 283 l~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 283 LRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred HHHhcCCCEEEEeccCCC
Confidence 999999999998766654
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0099 Score=55.71 Aligned_cols=94 Identities=24% Similarity=0.286 Sum_probs=61.1
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCC----hhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDIN----PNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s----~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
-.|+|..+|.|.++.++.+. + |.+...- ++.+...-. .|+ +.....=
T Consensus 367 RNVMDMnAg~GGFAAAL~~~------------------~---VWVMNVVP~~~~ntL~vIyd----RGL----IG~yhDW 417 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD------------------P---VWVMNVVPVSGPNTLPVIYD----RGL----IGVYHDW 417 (506)
T ss_pred eeeeeecccccHHHHHhccC------------------C---ceEEEecccCCCCcchhhhh----ccc----chhccch
Confidence 36999999999999988764 2 3333332 333332222 121 1112111
Q ss_pred cccCCCCCCCeeEEEecccccccc---CHHHHHHHHHhhccCCcEEEEEe
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVT---HIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.+.++.-..+||++.+...+.... +...+|-++-|+|+|+|.+++-+
T Consensus 418 CE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 418 CEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 233443346899999999987765 45788999999999999999743
|
; GO: 0008168 methyltransferase activity |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.013 Score=46.10 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=81.6
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+...+...+.++.+|+|+|.|.+....++... ...++++.++-.+..++-+.-..++. ..
T Consensus 63 nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~------------------~~a~GvELNpwLVaysrl~a~R~g~~-k~ 123 (199)
T KOG4058|consen 63 NVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL------------------RPAVGVELNPWLVAYSRLHAWRAGCA-KS 123 (199)
T ss_pred HHHHHccCCCCCcEEeccCCCceeehhhhhhCC------------------CcCCceeccHHHHHHHHHHHHHHhcc-cc
Confidence 456677777778999999999999888877742 56789999999998888887777776 78
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
.+|..-|+.+..+.+ |..++...+-.-++| .-.++..-|..+-.++..-+..|.
T Consensus 124 trf~RkdlwK~dl~d--y~~vviFgaes~m~d---Le~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 124 TRFRRKDLWKVDLRD--YRNVVIFGAESVMPD---LEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred hhhhhhhhhhccccc--cceEEEeehHHHHhh---hHHHHHhhCcCCCeEEEEecCCCc
Confidence 899999988876655 444443333112222 333455567778888876666654
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.011 Score=50.78 Aligned_cols=92 Identities=10% Similarity=0.029 Sum_probs=68.7
Q ss_pred HHHHhhcCCCCCC--eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC--
Q 036563 73 DRLVSKLNPFPGM--KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG-- 148 (288)
Q Consensus 73 ~~~~~~l~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-- 148 (288)
+.+++.+..+++. +|||+-+|+|..+..++... ++|+++|-++.+....+..+....
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G-------------------~~V~~vEr~p~vaalL~dgL~ra~~~ 136 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG-------------------CRVRMLERNPVVAALLDDGLARGYAD 136 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcC-------------------CEEEEEECCHHHHHHHHHHHHHhhhc
Confidence 5567777766666 89999999999999998873 789999999998877777766531
Q ss_pred --CCC---CceEEEEcccccC-CCCCCCeeEEEeccccccc
Q 036563 149 --YPD---KSLLWVEGDAEAL-CFEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 149 --~~~---~~v~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~ 183 (288)
... .+++++.+|.... .-....||+|++...+.+-
T Consensus 137 ~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 137 AEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred cccchhhhceEEEEeCcHHHHHhhCCCCCcEEEECCCCCCC
Confidence 110 3688888887654 2123379999998887664
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.028 Score=50.73 Aligned_cols=98 Identities=21% Similarity=0.285 Sum_probs=68.1
Q ss_pred cCCCCCCeEEEecCC-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 79 LNPFPGMKHLDVAGG-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 79 l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
....|+.+|+=+|+| .|..+..+++.. .++|+++|.+++-++.+++.-. ..++
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~------------------ga~Via~~~~~~K~e~a~~lGA--------d~~i 215 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAM------------------GAEVIAITRSEEKLELAKKLGA--------DHVI 215 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc------------------CCeEEEEeCChHHHHHHHHhCC--------cEEE
Confidence 455778899988887 356777777765 3999999999999988877532 2333
Q ss_pred Ec-ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 158 EG-DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 158 ~~-d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
.. |........+.+|+|+..-. ...+....+.|+++|.++++...
T Consensus 216 ~~~~~~~~~~~~~~~d~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 216 NSSDSDALEAVKEIADAIIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EcCCchhhHHhHhhCcEEEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 32 22222212234999885433 44577788999999999987665
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0082 Score=51.54 Aligned_cols=81 Identities=12% Similarity=0.022 Sum_probs=57.2
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|+|||||.--++..+.... +...|++.|++..+++.....+...+. +......|..
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~-----------------~~a~Y~a~DID~~~ve~l~~~l~~l~~---~~~~~v~Dl~ 164 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEA-----------------PGATYIAYDIDSQLVEFLNAFLAVLGV---PHDARVRDLL 164 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSS-----------------TT-EEEEEESBHHHHHHHHHHHHHTT----CEEEEEE-TT
T ss_pred CCchhhhhhccCCceehhhcccC-----------------CCcEEEEEeCCHHHHHHHHHHHHhhCC---CcceeEeeee
Confidence 36799999999988887777654 468999999999999999888877764 4566666765
Q ss_pred cCCCCCCCeeEEEecccccccc
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVT 184 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~ 184 (288)
.-+ +....|+.++.=+++-+.
T Consensus 165 ~~~-~~~~~DlaLllK~lp~le 185 (251)
T PF07091_consen 165 SDP-PKEPADLALLLKTLPCLE 185 (251)
T ss_dssp TSH-TTSEESEEEEET-HHHHH
T ss_pred ccC-CCCCcchhhHHHHHHHHH
Confidence 443 455799999877665543
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0074 Score=49.98 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=67.7
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC-----CCceEEEE
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP-----DKSLLWVE 158 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-----~~~v~~~~ 158 (288)
.-.+.|||||-|.+...+...+ |...+.|.+|--..-+..+.++...... -+|+....
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-----------------PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr 123 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-----------------PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLR 123 (249)
T ss_pred cceEEeeccCccchhhhccccC-----------------ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeee
Confidence 3569999999999999999998 6789999999777777777766544311 13556665
Q ss_pred cccccC-C--CCCCCeeEEEeccccccccC--------HHHHHHHHHhhccCCcEEEEEe
Q 036563 159 GDAEAL-C--FEDSTMDGYTIAFGIRNVTH--------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 159 ~d~~~~-~--~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.++... | +..+..+-.+..+.--|+.. ....+.+..-+|++||.++.+.
T Consensus 124 ~namk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 124 TNAMKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccchhhccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 554432 1 22222222222222112211 1346888889999999998653
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.53 Score=43.41 Aligned_cols=187 Identities=14% Similarity=0.139 Sum_probs=100.4
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeC----ChhHHHHHHHHhhh--
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDI----NPNMLNVGKKRALE-- 146 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~----s~~~~~~a~~~~~~-- 146 (288)
+.+++.+...+..+|+|+|.|.|.--..+++.+.. ...+||.-++|+++. +...++...+++.+
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~----------R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA 169 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALAS----------RPGGPPSLRITGIGPPNSGSADELQETGRRLAEFA 169 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhc----------CCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHH
Confidence 45666666666779999999999866666666542 114457889999999 67777766666443
Q ss_pred --cCCCCCceEEEEc---ccccC-----CCCCCCeeEEEeccccccccC-------H-HHHHHHHHhhccCCcEEEEEec
Q 036563 147 --RGYPDKSLLWVEG---DAEAL-----CFEDSTMDGYTIAFGIRNVTH-------I-EKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 147 --~~~~~~~v~~~~~---d~~~~-----~~~~~~~D~v~~~~~l~~~~~-------~-~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.|++ .+|... +.+.+ ....+..=+|-+.+.+|++.+ + ..+|+. .+.|+|.-.+++-.-
T Consensus 170 ~~lgv~---fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~-ir~L~P~vvv~~E~e 245 (374)
T PF03514_consen 170 RSLGVP---FEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRV-IRSLNPKVVVLVEQE 245 (374)
T ss_pred HHcCcc---EEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHH-HHhcCCCEEEEEeec
Confidence 3433 444332 22222 122333434445556777742 2 335544 557899977665322
Q ss_pred -cCCChHHHHHHHHHhh--ccccccccccccCCCcchhhh-----HHHH------------hcCCChHHHHHHHHHcCCc
Q 036563 209 -SHVDIPVFKELYDYYS--FSVIPAIGELVAGDRGSYQYL-----VESV------------RRFPPQEKFAAMISDAGFQ 268 (288)
Q Consensus 209 -~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~------------~~~~~~~~~~~~l~~aGf~ 268 (288)
.+....+...+.+.+. ..+...+...+.........+ ...+ .+.-+.+.|+..++.+||+
T Consensus 246 a~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~~~aGF~ 325 (374)
T PF03514_consen 246 ADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRRMRRAGFR 325 (374)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHHHHhcCCe
Confidence 2323334434333321 111222222221111111111 1111 1223567899999999998
Q ss_pred EEEEE
Q 036563 269 KVEYE 273 (288)
Q Consensus 269 ~v~~~ 273 (288)
.+...
T Consensus 326 ~~~ls 330 (374)
T PF03514_consen 326 PVPLS 330 (374)
T ss_pred ecCCC
Confidence 77664
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.033 Score=48.00 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=66.2
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh-----hcCCCCCceEEE
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL-----ERGYPDKSLLWV 157 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~-----~~~~~~~~v~~~ 157 (288)
.+.+|||+|+|+|..+..++... ..+|...|.... +...+.... ..++. ..+...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~------------------~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g-~~v~v~ 145 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL------------------GAEVVLTDLPKV-VENLKFNRDKNNIALNQLG-GSVIVA 145 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh------------------cceeccCCchhh-HHHHHHhhhhhhhhhhhcC-CceeEE
Confidence 35679999999998888887765 488888886433 222222211 11111 133333
Q ss_pred EcccccC---CCCCCC-eeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 158 EGDAEAL---CFEDST-MDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 158 ~~d~~~~---~~~~~~-~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..+-... .+.... +|+|++..++.+......++.-++.+|..++.+++.
T Consensus 146 ~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 146 ILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred EEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence 3332221 111223 999999999988888888888999999999965543
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.028 Score=49.29 Aligned_cols=110 Identities=19% Similarity=0.205 Sum_probs=81.4
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~ 159 (288)
..++++|-||.|.|.+....+.+- ....+.-+|++.+.++..++-.+.. ++..+++.+..+
T Consensus 120 ~npkkvlVVgggDggvlrevikH~-----------------~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iG 182 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHK-----------------SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIG 182 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccc-----------------cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEec
Confidence 446789999999999998888873 3478999999999999888876543 455678999999
Q ss_pred ccccC--CCCCCCeeEEEeccccccccC----HHHHHHHHHhhccCCcEEEEEec
Q 036563 160 DAEAL--CFEDSTMDGYTIAFGIRNVTH----IEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 160 d~~~~--~~~~~~~D~v~~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
|...+ ....++||+|+....=--.+. .......+.+.||+||++.+..-
T Consensus 183 DG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 183 DGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred cHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 87654 244678999986432111110 14567889999999999987653
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.095 Score=50.11 Aligned_cols=101 Identities=20% Similarity=0.199 Sum_probs=68.4
Q ss_pred CCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 81 PFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 81 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
..++.+|+=+|||. |..+...++..+ +.|+++|.+++.++.+++. + ..+...
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG------------------A~V~a~D~~~~rle~aesl----G-----A~~v~i 214 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLG------------------AIVRAFDTRPEVAEQVESM----G-----AEFLEL 214 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCC------------------CEEEEEeCCHHHHHHHHHc----C-----CeEEEe
Confidence 35688999999997 888888888874 7899999999998888763 1 111111
Q ss_pred cccc-----------C--C--------CCC--CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 160 DAEA-----------L--C--------FED--STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 160 d~~~-----------~--~--------~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
|..+ . . +.+ ..+|+++.......-+.+.-+.++..+.+||||.++.+..
T Consensus 215 ~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 215 DFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred ccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 1100 0 0 011 3589998766543333344445999999999999987654
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.076 Score=46.08 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=39.4
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
+.+|+|+|+|+|.++..+++.........+ ...+++.+|+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~---------~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVY---------KRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHH---------TTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhh---------hcceEEEEcCCHHHHHHHHHHhhh
Confidence 469999999999999999998742111111 247999999999998888888765
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.15 Score=50.69 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=63.1
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhh-hhhhhhhcccccccCCCceEEEEeCCh---hHHHHHH-----------HHhhhc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNS-IKRRALQDVLEDDLQEETRIYVCDINP---NMLNVGK-----------KRALER 147 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~D~s~---~~~~~a~-----------~~~~~~ 147 (288)
+.-+|+|+|-|+|.......+.... ...++ ...+..-+++.+|..| +.+..+- +....+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~------~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHP------PARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQW 130 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCC------CCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhC
Confidence 3468999999999977766655410 00000 0000135788888644 2222221 111111
Q ss_pred -----CC-----CCC--ceEEEEcccccC-CCCCCCeeEEEeccc-cccccCH--HHHHHHHHhhccCCcEEEE
Q 036563 148 -----GY-----PDK--SLLWVEGDAEAL-CFEDSTMDGYTIAFG-IRNVTHI--EKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 148 -----~~-----~~~--~v~~~~~d~~~~-~~~~~~~D~v~~~~~-l~~~~~~--~~~l~~~~~~L~pgG~l~i 205 (288)
++ .+. .+.+..+|+.+. +.....+|+++...- -..-++. ..+++.+.++++|||.+.-
T Consensus 131 ~~~~~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 131 PLLLPGCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred CccCCCceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 11 011 233555776543 222346999987542 1111222 6789999999999999973
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.082 Score=48.71 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=76.3
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+|||.=+|+|.=++..+.+.+ ...+|+.-|+|+++++..++++..+++...++.+...|+..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~----------------~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ 113 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELA----------------GVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANV 113 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-S----------------SECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHH
T ss_pred CceEEeccccccHHHHHHHHHcC----------------CCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHH
Confidence 46899999999999999988853 24789999999999999999999888873368888888866
Q ss_pred CC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 164 LC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 164 ~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+- .....||+|=. .-+-.+..+|..+.+.++.||.+.+..
T Consensus 114 ll~~~~~~fD~IDl----DPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 114 LLYSRQERFDVIDL----DPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp HHCHSTT-EEEEEE------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhhccccCCEEEe----CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 42 24567999953 222356789999999999999998743
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.2 Score=38.84 Aligned_cols=154 Identities=17% Similarity=0.139 Sum_probs=84.8
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC-CCCceEEEEccccc
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY-PDKSLLWVEGDAEA 163 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~v~~~~~d~~~ 163 (288)
..|+.+|||-=.-...+... ++..++=+|. |++++.-++.+.+.+. +..+..++..|+..
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~------------------~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWP------------------DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred cEEEEeCCccccHHHhcCCC------------------CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 46999999975555443211 2245555553 4455555555554332 12577888888752
Q ss_pred C--------CCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCC-ChHHHHHHHHHhhcccccccc
Q 036563 164 L--------CFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHV-DIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 164 ~--------~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 232 (288)
. .+..+.--++++-.++.+++. ...+++.+.+...||+.+++ +...+ ............. .... +
T Consensus 144 ~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~~~~~~~~~~~~-~~~~--~ 219 (260)
T TIGR00027 144 DWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDGEWRAGMRAPVY-HAAR--G 219 (260)
T ss_pred hHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-EeccccchhHHHHHHHHHH-Hhhh--c
Confidence 1 122234557777777777763 56788999888888888875 33322 1111110111100 0000 0
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEE
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEY 272 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 272 (288)
...+ ......+++++.++|.+.||+..+.
T Consensus 220 ----~~~~-------~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 220 ----VDGS-------GLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred ----cccc-------ccccCCChhhHHHHHHHCCCeeecC
Confidence 0001 1111347899999999999998765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.23 Score=44.32 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=72.9
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
+-..+++.+||=+|+|+ |..+..+++.++ ..+|..+|++++.++.|++ +... .+..
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-----------------A~~VVi~d~~~~Rle~Ak~-~Ga~-----~~~~ 220 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-----------------ASDVVITDLVANRLELAKK-FGAT-----VTDP 220 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcC-----------------CCcEEEeecCHHHHHHHHH-hCCe-----EEee
Confidence 44557789999999997 889999999885 4899999999999999988 3221 1111
Q ss_pred EEc-c-cccC------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCCh
Q 036563 157 VEG-D-AEAL------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDI 213 (288)
Q Consensus 157 ~~~-d-~~~~------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 213 (288)
... + ...+ ......+|..+-.. .....++.....++++|.++++.+..+..
T Consensus 221 ~~~~~~~~~~~~~v~~~~g~~~~d~~~dCs------G~~~~~~aai~a~r~gGt~vlvg~g~~~~ 279 (354)
T KOG0024|consen 221 SSHKSSPQELAELVEKALGKKQPDVTFDCS------GAEVTIRAAIKATRSGGTVVLVGMGAEEI 279 (354)
T ss_pred ccccccHHHHHHHHHhhccccCCCeEEEcc------CchHHHHHHHHHhccCCEEEEeccCCCcc
Confidence 111 1 1111 12223477776332 34556777788999999998888766543
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.16 Score=47.98 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=76.2
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
...|+-+|+|.|-+....++.... +...-++++++-+|+++-..+.+ ....+. .+|.++..|+..
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~-------------~~RkVklyavEKNPNAivtL~~~-n~~~W~-~~Vtii~~DMR~ 432 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEE-------------TDRKVKLYAVEKNPNAIVTLQNR-NFECWD-NRVTIISSDMRK 432 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHH-------------hcCceEEEEEecCcchhhhhhhh-chhhhc-CeeEEEeccccc
Confidence 356889999999988777766431 01246889999999988776653 233344 789999999999
Q ss_pred CCCCCCCeeEEEeccccccccC---HHHHHHHHHhhccCCcEEE
Q 036563 164 LCFEDSTMDGYTIAFGIRNVTH---IEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~ 204 (288)
+..+.+..|++++ ..|..+.| -...|.-+.+.|||+|..+
T Consensus 433 w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 433 WNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred cCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 8755578999875 23333333 2568889999999998776
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.17 Score=43.76 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=63.5
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeC-------C-------------------hh
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDI-------N-------------------PN 135 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~-------s-------------------~~ 135 (288)
.-++.|+|+||-.|..+..+...... ...+..+++++|. + ..
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~------------~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~ 140 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEA------------YGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAV 140 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHC------------TTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTH
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHH------------hCCCCCEEEEEeCCCCCCCCccccccccchhhhhhccccccc
Confidence 34568999999999877655443210 0112356777773 0 11
Q ss_pred HHHHHHHHhhhcCCCCCceEEEEccccc-CC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 136 MLNVGKKRALERGYPDKSLLWVEGDAEA-LC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.++..++++...++.++++.++.|.+.+ ++ .+.+++-++.+..-+ ......+|+.++..|.|||.+++-+...
T Consensus 141 s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl--YesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 141 SLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL--YESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S--HHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccc--hHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 3455666666666555789999999754 23 233334333332222 2335778999999999999999754433
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.17 Score=45.88 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=46.3
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
+.+.+..+.+..++|+|+|+|.++..++.....-.++.+ ...++..+++|++..+.=++.+...
T Consensus 69 ~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~---------~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 69 LWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELY---------EALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHH---------hcceEEEEecCHHHHHHHHHHHhcc
Confidence 334555556678999999999999999887643222222 3589999999999877766666554
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.12 Score=47.27 Aligned_cols=103 Identities=21% Similarity=0.269 Sum_probs=70.2
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc-
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG- 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~- 159 (288)
.++.+|+=+|||+ |.++..+++..+ ..+++++|.+++.++.|++...... +.....
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~G-----------------a~~Viv~d~~~~Rl~~A~~~~g~~~-----~~~~~~~ 224 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLG-----------------ASVVIVVDRSPERLELAKEAGGADV-----VVNPSED 224 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-----------------CceEEEeCCCHHHHHHHHHhCCCeE-----eecCccc
Confidence 3444899999998 988888888874 4889999999999999988543211 111111
Q ss_pred cc-ccC-CCCC-CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 160 DA-EAL-CFED-STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 160 d~-~~~-~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
+. ... .... ..+|+++-.-. ....+..+.+.++++|.+.++......
T Consensus 225 ~~~~~~~~~t~g~g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 225 DAGAEILELTGGRGADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred cHHHHHHHHhCCCCCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 11 000 1122 25999874333 355889999999999999987766554
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.073 Score=49.14 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=54.1
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
.|||||.|||.++..+..... ..+++++.=..|...+++.....++. +++.++.--..+..
T Consensus 69 ~vLdigtGTGLLSmMAvraga------------------D~vtA~EvfkPM~d~arkI~~kng~S-dkI~vInkrStev~ 129 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA------------------DSVTACEVFKPMVDLARKIMHKNGMS-DKINVINKRSTEVK 129 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC------------------CeEEeehhhchHHHHHHHHHhcCCCc-cceeeeccccceee
Confidence 599999999999998888753 67999999999999999999888888 77777654433332
Q ss_pred CC-CCCeeEEEe
Q 036563 166 FE-DSTMDGYTI 176 (288)
Q Consensus 166 ~~-~~~~D~v~~ 176 (288)
.. ....|+++.
T Consensus 130 vg~~~RadI~v~ 141 (636)
T KOG1501|consen 130 VGGSSRADIAVR 141 (636)
T ss_pred ecCcchhhhhhH
Confidence 11 223555543
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.12 Score=43.37 Aligned_cols=113 Identities=16% Similarity=0.059 Sum_probs=63.9
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc----------
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER---------- 147 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~---------- 147 (288)
.+....+.++.|.+||.|.+...+.-.+.. .-..+++.|+++.+++.|++++.-.
T Consensus 46 ~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~---------------~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~ 110 (246)
T PF11599_consen 46 YLEGKGPYTLYDPCCGSGYLLTVLGLLHRR---------------RLRRVYASDIDEDALELARKNLSLLTPEGLEARRE 110 (246)
T ss_dssp TSSS-S-EEEEETT-TTSHHHHHHHHHTGG---------------GEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred hhcCCCCeeeeccCCCccHHHHHHHHhhhH---------------HHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHH
Confidence 333344568999999999988777665531 2378999999999999998864211
Q ss_pred ------------------------------CCCCCceEEEEcccccCC-----CCCCCeeEEEeccccccccC-------
Q 036563 148 ------------------------------GYPDKSLLWVEGDAEALC-----FEDSTMDGYTIAFGIRNVTH------- 185 (288)
Q Consensus 148 ------------------------------~~~~~~v~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~~~------- 185 (288)
..........+.|+.+.. ......|+|+......+..+
T Consensus 111 eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~ 190 (246)
T PF11599_consen 111 ELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSG 190 (246)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---H
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCC
Confidence 001122456666665521 11234699998766443332
Q ss_pred --HHHHHHHHHhhccCCcEEEE
Q 036563 186 --IEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 186 --~~~~l~~~~~~L~pgG~l~i 205 (288)
...+|..+.++|-+++++.+
T Consensus 191 ~p~~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 191 GPVAQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHHHHHHCCS-TT-EEEE
T ss_pred CcHHHHHHHHHhhCCCCcEEEE
Confidence 35689999999955555555
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.2 Score=42.51 Aligned_cols=83 Identities=14% Similarity=0.109 Sum_probs=54.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc-CCCCCceEEEEc-c
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER-GYPDKSLLWVEG-D 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~v~~~~~-d 160 (288)
++.++||||.|.-.+--.+-.+- =+.+++|.|+++..++.|+..+..+ ++. ..++.... |
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~e-----------------YgwrfvGseid~~sl~sA~~ii~~N~~l~-~~I~lr~qk~ 139 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHE-----------------YGWRFVGSEIDSQSLSSAKAIISANPGLE-RAIRLRRQKD 139 (292)
T ss_pred CceEEEeeccCccccccccccee-----------------ecceeecCccCHHHHHHHHHHHHcCcchh-hheeEEeccC
Confidence 45689999999765432222211 1389999999999999999888776 333 34444332 2
Q ss_pred cccC----CCCCCCeeEEEeccccccc
Q 036563 161 AEAL----CFEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 161 ~~~~----~~~~~~~D~v~~~~~l~~~ 183 (288)
-..+ .-.++.||..+|+..+|..
T Consensus 140 ~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 140 SDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ccccccccccccceeeeEecCCCcchh
Confidence 2111 1236789999999999865
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.035 Score=48.45 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=62.1
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHH-----------HhhhcCCC
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKK-----------RALERGYP 150 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~-----------~~~~~~~~ 150 (288)
..+++|||+|||+|.....+.... ...++..|.+...++...- ...+..
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~------------------~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~-- 174 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG------------------AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENH-- 174 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc------------------cceeeeEecchhheeeecccceecchhhhhhhhhcc--
Confidence 357899999999999888887764 2677788877766521100 000000
Q ss_pred CCceEEEEc---ccccCCCCCCCeeEEEeccccccccCHHHH-HHHHHhhccCCcEEEE
Q 036563 151 DKSLLWVEG---DAEALCFEDSTMDGYTIAFGIRNVTHIEKA-LAEAYRVLKRGGRFLC 205 (288)
Q Consensus 151 ~~~v~~~~~---d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~-l~~~~~~L~pgG~l~i 205 (288)
.-...... |.....-....||+|.++-.+...+..... +.....+++++|.+++
T Consensus 175 -~~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 175 -KVDEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred -cceeccccccccchhhhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 00111111 211110011279999998888877766655 6677788888998874
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.29 Score=44.30 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=60.3
Q ss_pred CCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 80 NPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
...++.+||=.|||. |..+..+++..+ ..+++++|.+++.++.+++. +.. .-+....
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G-----------------~~~Vi~~~~~~~~~~~a~~l----Ga~-~vi~~~~ 223 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLG-----------------AAEIVCADVSPRSLSLAREM----GAD-KLVNPQN 223 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-----------------CcEEEEEeCCHHHHHHHHHc----CCc-EEecCCc
Confidence 334577888888864 666666777653 13689999999888877653 211 0011111
Q ss_pred cccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 159 GDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 159 ~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+........+.+|+|+-... ....+....+.|+++|.++++..
T Consensus 224 ~~~~~~~~~~g~~D~vid~~G------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 224 DDLDHYKAEKGYFDVSFEVSG------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ccHHHHhccCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 112111111234888864321 23467778899999999998654
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.12 Score=44.10 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=51.6
Q ss_pred HHHHhhcCCCCCC--eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--C
Q 036563 73 DRLVSKLNPFPGM--KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--G 148 (288)
Q Consensus 73 ~~~~~~l~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~ 148 (288)
+.+++..+..++. +|||.-+|-|.-+..++.. +++|+++|-||-+....+..+... .
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-------------------G~~V~~lErspvia~Ll~dGL~r~~~~ 123 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-------------------GCKVTGLERSPVIAALLKDGLKRAQQD 123 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-------------------T--EEEEE--HHHHHHHHHHHHHHHHS
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-------------------CCeEEEEECCHHHHHHHHHHHHHHHhC
Confidence 3455666655543 8999999999999988753 389999999997665544332211 1
Q ss_pred CC-----CCceEEEEcccccC-CCCCCCeeEEEecccccc
Q 036563 149 YP-----DKSLLWVEGDAEAL-CFEDSTMDGYTIAFGIRN 182 (288)
Q Consensus 149 ~~-----~~~v~~~~~d~~~~-~~~~~~~D~v~~~~~l~~ 182 (288)
-. -.+++++.+|..+. ..++.+||+|.+...+.+
T Consensus 124 ~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 124 PELLAEAMRRIQLIHGDALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp TTTHHHHHHHEEEEES-CCCHCCCHSS--SEEEE--S---
T ss_pred cHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEEECCCCCC
Confidence 00 03789999997663 455678999999888765
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.23 Score=43.93 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=43.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
+.++.... .++..|||.-||+|..+.++.+. +.+++|+|++++..+.+++++..
T Consensus 199 erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~l-------------------gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 199 KRIILASS-NPGDIVLDPFAGSFTTGAVAKAS-------------------GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHhC-CCCCEEEECCCCCcHHHHHHHHc-------------------CCCEEEEeCCHHHHHHHHHHHHh
Confidence 34444443 46889999999999999887776 48999999999999999999753
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.88 Score=41.93 Aligned_cols=109 Identities=21% Similarity=0.217 Sum_probs=67.8
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
.....++.+||.+|||+ |..+..+++..+ ..+++++|.++...+.+++.... ..+.+
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-----------------~~~vi~~~~~~~~~~~~~~~~~~-----~vi~~ 236 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-----------------AERVIAIDRVPERLEMARSHLGA-----ETINF 236 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC-----------------CCEEEEEcCCHHHHHHHHHcCCc-----EEEcC
Confidence 34456778999999987 888888888763 23699999999888887764211 01111
Q ss_pred EEcc-ccc-C-CC-CCCCeeEEEeccc---------------cccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 157 VEGD-AEA-L-CF-EDSTMDGYTIAFG---------------IRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 157 ~~~d-~~~-~-~~-~~~~~D~v~~~~~---------------l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
...+ ... + .+ ....+|+++-.-. ++...+....+.++.+.++++|.+++...
T Consensus 237 ~~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 237 EEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CcchHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 1111 110 1 11 2235888875321 11113445678899999999999987643
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.27 Score=37.87 Aligned_cols=87 Identities=18% Similarity=0.244 Sum_probs=53.4
Q ss_pred ceEEEEcccccC-CCCCCCeeEEEeccccccccCH----HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccc
Q 036563 153 SLLWVEGDAEAL-CFEDSTMDGYTIAFGIRNVTHI----EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSV 227 (288)
Q Consensus 153 ~v~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 227 (288)
.+.+..+|+.+. +.....+|+++...- .--.++ ..+++++.++++|||.+..
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgF-sP~~nPelWs~e~~~~l~~~~~~~~~l~T---------------------- 88 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGF-SPAKNPELWSEELFKKLARLSKPGGTLAT---------------------- 88 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEE----------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCC-CCcCCcccCCHHHHHHHHHHhCCCcEEEE----------------------
Confidence 456677887542 222367999997642 111122 6799999999999999873
Q ss_pred cccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 228 IPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
+.....++..|.++||.+....-+ ++--....|.|
T Consensus 89 ------------------------ys~a~~Vr~~L~~aGF~v~~~~g~-g~Kr~~~~a~~ 123 (124)
T PF05430_consen 89 ------------------------YSSAGAVRRALQQAGFEVEKVPGF-GRKREMLRAVK 123 (124)
T ss_dssp ------------------------S--BHHHHHHHHHCTEEEEEEE-S-TTSSEEEEEEC
T ss_pred ------------------------eechHHHHHHHHHcCCEEEEcCCC-CCcchheEEEc
Confidence 224567899999999997666543 43334444444
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.27 Score=47.01 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=64.9
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
.++.+++=+|+|. |..+..++...+ +.++++|.+++.++.+++. + ..++..|
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lG------------------A~V~v~d~~~~rle~a~~l----G-----a~~v~v~ 214 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLG------------------AIVRAFDTRPEVKEQVQSM----G-----AEFLELD 214 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC------------------CEEEEEeCCHHHHHHHHHc----C-----CeEEecc
Confidence 3568999999997 777777777763 7899999999987777652 1 1222222
Q ss_pred ccc-----------------------CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 161 AEA-----------------------LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 161 ~~~-----------------------~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
..+ ++..-..+|+|+..-.+..-+.+.-+.++..+.+|||+.++=
T Consensus 215 ~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 215 FKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred ccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 110 111124599998776555544554567788999999998773
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.24 Score=41.60 Aligned_cols=50 Identities=26% Similarity=0.351 Sum_probs=37.4
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHH
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKK 142 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~ 142 (288)
+.++.... .++..|||.=||+|..+.++.+. +.+++++|+++...+.|++
T Consensus 182 ~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l-------------------~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 182 ERLIKAST-NPGDIVLDPFAGSGTTAVAAEEL-------------------GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHS--TT-EEEETT-TTTHHHHHHHHT-------------------T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHhhh-ccceeeehhhhccChHHHHHHHc-------------------CCeEEEEeCCHHHHHHhcC
Confidence 44555544 45789999999999999888776 3789999999999988864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.047 Score=40.79 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=27.7
Q ss_pred CeeEEEeccccccc--c----CHHHHHHHHHhhccCCcEEEE
Q 036563 170 TMDGYTIAFGIRNV--T----HIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 170 ~~D~v~~~~~l~~~--~----~~~~~l~~~~~~L~pgG~l~i 205 (288)
.||+|+|..+..++ + ....+++.+.+.|+|||.+++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 48999998874433 1 357799999999999999985
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.51 Score=36.36 Aligned_cols=47 Identities=9% Similarity=-0.093 Sum_probs=40.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
.+.+|+|||++-|..++.++-.. ...|+++++++...+..++.+...
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G------------------AK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG------------------ASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC------------------ccEEEEeccCHHHHHHHHHHhhhh
Confidence 46799999999999999998874 378999999999999888866543
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.5 Score=40.37 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=34.6
Q ss_pred EEEEcccccC--CCCCCCeeEEEeccccc----c-----c--c---C-HHHHHHHHHhhccCCcEEEE
Q 036563 155 LWVEGDAEAL--CFEDSTMDGYTIAFGIR----N-----V--T---H-IEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 155 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~----~-----~--~---~-~~~~l~~~~~~L~pgG~l~i 205 (288)
+++.+|+.+. .++++++|+|+...... . + . + ....+.++.|+|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4566776554 46777888888765432 0 0 0 1 24678999999999998875
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=93.02 E-value=2.4 Score=31.58 Aligned_cols=86 Identities=19% Similarity=0.159 Sum_probs=55.6
Q ss_pred CCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC----CC
Q 036563 92 GGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC----FE 167 (288)
Q Consensus 92 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~----~~ 167 (288)
||.|.++..+++.+.. ...+++.+|.+++..+.++.. .+.++.+|..+.. ..
T Consensus 4 ~G~g~~~~~i~~~L~~---------------~~~~vvvid~d~~~~~~~~~~---------~~~~i~gd~~~~~~l~~a~ 59 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE---------------GGIDVVVIDRDPERVEELREE---------GVEVIYGDATDPEVLERAG 59 (116)
T ss_dssp ES-SHHHHHHHHHHHH---------------TTSEEEEEESSHHHHHHHHHT---------TSEEEES-TTSHHHHHHTT
T ss_pred EcCCHHHHHHHHHHHh---------------CCCEEEEEECCcHHHHHHHhc---------ccccccccchhhhHHhhcC
Confidence 6777888888888752 124899999999887776653 4678889987642 22
Q ss_pred CCCeeEEEeccccccccCHH-HHHHHHHhhccCCcEEEE
Q 036563 168 DSTMDGYTIAFGIRNVTHIE-KALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 168 ~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i 205 (288)
-.+.|.+++... .+.. ..+....+.+.|...+++
T Consensus 60 i~~a~~vv~~~~----~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 60 IEKADAVVILTD----DDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp GGCESEEEEESS----SHHHHHHHHHHHHHHTTTSEEEE
T ss_pred ccccCEEEEccC----CHHHHHHHHHHHHHHCCCCeEEE
Confidence 346887776443 2222 234455666778888775
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.28 Score=45.79 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=70.7
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh--c-CCC-CCceEE
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE--R-GYP-DKSLLW 156 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~--~-~~~-~~~v~~ 156 (288)
...+..++|+|.|.|.-.-++...-. +-...++.||.+..|.....+.... . +.. ..++.+
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr---------------~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~ 262 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWR---------------QTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVF 262 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcc---------------cccceeEeeccchHHHHHHHHhhcChhhcCchhccccch
Confidence 34456788999887654433333221 0136899999999999998887765 1 110 011111
Q ss_pred EEcccccCCC-CCCCeeEEEeccccccccCH----HHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 157 VEGDAEALCF-EDSTMDGYTIAFGIRNVTHI----EKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 157 ~~~d~~~~~~-~~~~~D~v~~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
...- ++. ....||+|++.+.+++..+. ...-..+.+..++|+.+++++-..+.
T Consensus 263 ~r~~---~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~ 320 (491)
T KOG2539|consen 263 HRQR---LPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTM 320 (491)
T ss_pred hccc---CCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCcc
Confidence 1111 232 23459999999999988643 22344566777889999998876653
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.6 Score=38.58 Aligned_cols=107 Identities=13% Similarity=0.182 Sum_probs=72.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+..|+|+|.-.|..+...+...-. .. ...++.++|++-..+..+.... +++.+++++..
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s-----------~G--q~~kvl~vdIdi~~~~p~a~e~-------p~i~f~egss~ 128 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMIS-----------IG--QPFKVLGVDIDIKPLDPAAREV-------PDILFIEGSST 128 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHh-----------cC--CCceEEEEecccCcCChhhhcC-------CCeEEEeCCCC
Confidence 3468999999999888887775410 01 2378999998766554333221 68999999876
Q ss_pred cCC-------CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 163 ALC-------FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 163 ~~~-------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
... ..++.--+.+|..+-|+.......|+-..++|.-|-++++-+..
T Consensus 129 dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 129 DPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred CHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccc
Confidence 642 12222234455556666667778888899999999999875443
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=92.75 E-value=3.7 Score=39.43 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=71.4
Q ss_pred HHHHHhhcCCC--CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 72 KDRLVSKLNPF--PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 72 ~~~~~~~l~~~--~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.+.+.+.+... |+..|.|..||+|.+......... +++....+++.+..+++...++..+.-.+.
T Consensus 204 v~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~-------------~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~ 270 (501)
T TIGR00497 204 SELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLG-------------EKTSLVSYYGQEINHTTYNLCRMNMILHNI 270 (501)
T ss_pred HHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhc-------------ccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence 34444444432 456899999999998876544321 112346799999999999999887644433
Q ss_pred CCCceEEEEccc-ccCCC-CCCCeeEEEecccccc---------------------cc----CHHHHHHHHHhhccCCcE
Q 036563 150 PDKSLLWVEGDA-EALCF-EDSTMDGYTIAFGIRN---------------------VT----HIEKALAEAYRVLKRGGR 202 (288)
Q Consensus 150 ~~~~v~~~~~d~-~~~~~-~~~~~D~v~~~~~l~~---------------------~~----~~~~~l~~~~~~L~pgG~ 202 (288)
..+......+|- ..+.+ ....||.|+++..+.. ++ .-..++..+...|++||.
T Consensus 271 ~~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~ 350 (501)
T TIGR00497 271 DYANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGT 350 (501)
T ss_pred CccccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCe
Confidence 211222223332 21212 2345787776553211 01 123478888999999997
Q ss_pred EEEE
Q 036563 203 FLCL 206 (288)
Q Consensus 203 l~i~ 206 (288)
..++
T Consensus 351 ~aiI 354 (501)
T TIGR00497 351 AAIV 354 (501)
T ss_pred EEEE
Confidence 5543
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=92.53 E-value=2 Score=34.78 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=78.2
Q ss_pred ecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEE--EeCChhHHHH---HHHHhhhcCCCCCceE-EEEccccc
Q 036563 90 VAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYV--CDINPNMLNV---GKKRALERGYPDKSLL-WVEGDAEA 163 (288)
Q Consensus 90 iG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~D~s~~~~~~---a~~~~~~~~~~~~~v~-~~~~d~~~ 163 (288)
||=|.=.++..+++.++ ....+++ .|...+..+. +..++... ...++. ....|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~----------------~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L--~~~g~~V~~~VDat~ 64 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFG----------------SATNLVATSYDSEEELLQKYPDAEENLEEL--RELGVTVLHGVDATK 64 (166)
T ss_pred eeccchHHHHHHHHHcC----------------CCCeEEEeecCchHHHHHhcccHHHHHHHH--hhcCCccccCCCCCc
Confidence 55566677788888763 1344544 4443322221 11222222 112333 35567776
Q ss_pred CC----CCCCCeeEEEecccccc-----cc-C-------HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcc
Q 036563 164 LC----FEDSTMDGYTIAFGIRN-----VT-H-------IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFS 226 (288)
Q Consensus 164 ~~----~~~~~~D~v~~~~~l~~-----~~-~-------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~ 226 (288)
+. .....||.|+.++.... .. + ...+++.+.++|+++|.+.+.-.....
T Consensus 65 l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p-------------- 130 (166)
T PF10354_consen 65 LHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP-------------- 130 (166)
T ss_pred ccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--------------
Confidence 63 24578999999887443 01 1 245789999999999999975332211
Q ss_pred ccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCee
Q 036563 227 VIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVV 280 (288)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~ 280 (288)
++...++++-+++||..++..++....+
T Consensus 131 --------------------------y~~W~i~~lA~~~gl~l~~~~~F~~~~y 158 (166)
T PF10354_consen 131 --------------------------YDSWNIEELAAEAGLVLVRKVPFDPSDY 158 (166)
T ss_pred --------------------------CccccHHHHHHhcCCEEEEEecCCHHHC
Confidence 1334566788889999888877765443
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.43 Score=41.99 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=51.6
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+++|+-||.|.++..+.+.. ...+.++|+++.+.+..+.+... . ...+|+.++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G------------------~~~v~a~e~~~~a~~~~~~N~~~-------~-~~~~Di~~~~ 55 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG------------------FEIVAANEIDKSAAETYEANFPN-------K-LIEGDITKID 55 (275)
T ss_pred cEEEEccCcchHHHHHHHcC------------------CEEEEEEeCCHHHHHHHHHhCCC-------C-CccCccccCc
Confidence 79999999999987776652 25678899999998887776532 1 4556776653
Q ss_pred CC--CCCeeEEEeccccccc
Q 036563 166 FE--DSTMDGYTIAFGIRNV 183 (288)
Q Consensus 166 ~~--~~~~D~v~~~~~l~~~ 183 (288)
.. ...+|+++.......+
T Consensus 56 ~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 56 EKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred hhhcCCCCCEEEeCCCChhh
Confidence 21 2469999988765533
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.58 Score=40.01 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=43.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
+.++.... .++..|||.=||+|..+.+..+. +.+++|+|+++...+.+.+++...
T Consensus 154 ~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~-------------------~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 154 QPLIESFT-HPNAIVLDPFAGSGSTCVAALQS-------------------GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHc-------------------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 34444433 46789999999999999888775 378999999999999998887653
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.12 E-value=1 Score=34.17 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=58.4
Q ss_pred CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC-----C-C
Q 036563 93 GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL-----C-F 166 (288)
Q Consensus 93 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~-----~-~ 166 (288)
|.|..+..+++.. +.+++++|.++..++.+++.- --.++..+-.++ . .
T Consensus 1 ~vG~~a~q~ak~~------------------G~~vi~~~~~~~k~~~~~~~G--------a~~~~~~~~~~~~~~i~~~~ 54 (130)
T PF00107_consen 1 GVGLMAIQLAKAM------------------GAKVIATDRSEEKLELAKELG--------ADHVIDYSDDDFVEQIRELT 54 (130)
T ss_dssp HHHHHHHHHHHHT------------------TSEEEEEESSHHHHHHHHHTT--------ESEEEETTTSSHHHHHHHHT
T ss_pred ChHHHHHHHHHHc------------------CCEEEEEECCHHHHHHHHhhc--------cccccccccccccccccccc
Confidence 4577888888886 399999999999888876532 112232222211 1 2
Q ss_pred CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 167 EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 167 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
....+|+|+-.- .....++....+|+++|.++++....
T Consensus 55 ~~~~~d~vid~~------g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 55 GGRGVDVVIDCV------GSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp TTSSEEEEEESS------SSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccccceEEEEec------CcHHHHHHHHHHhccCCEEEEEEccC
Confidence 234799997432 23568889999999999999876654
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.82 Score=40.70 Aligned_cols=125 Identities=13% Similarity=0.143 Sum_probs=73.5
Q ss_pred CCeEEEecCCccHHHHHHHHhhh-h--hhhhhhhcccccccCCCceEEEEeCChh--HHHHHHHHhhhc----------C
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVN-S--IKRRALQDVLEDDLQEETRIYVCDINPN--MLNVGKKRALER----------G 148 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~-~--~~~~~~~~~~~~~~~~~~~v~~~D~s~~--~~~~a~~~~~~~----------~ 148 (288)
..+||.||.|.|.-..+++.... . ........-.....++...++.+|+.+- .+......+... +
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 36999999999876666666551 0 0000000000001223468999998663 333333333222 0
Q ss_pred C---C--CCceEEEEcccccCCCC-------CCCeeEEEeccccccc-----cCHHHHHHHHHhhccCCcEEEEEec
Q 036563 149 Y---P--DKSLLWVEGDAEALCFE-------DSTMDGYTIAFGIRNV-----THIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 149 ~---~--~~~v~~~~~d~~~~~~~-------~~~~D~v~~~~~l~~~-----~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+ + .-++.|.+.|+..+..+ ....|+|...++++.+ ....++|.++-..++||..++|+|-
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 1 1 13578888888766422 1247888777775422 3446789999999999999999765
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.2 Score=47.09 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=79.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||.=|++|.-++..+.+.+ ....+++.|.+++.+...+.+...++.. ..++....|+.
T Consensus 109 ~~l~vLealsAtGlrslRya~El~----------------~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-~ive~~~~DA~ 171 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELP----------------GVRQVVANDLNENAVTSIQRNVELNGVE-DIVEPHHSDAN 171 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhc----------------chhhhcccCCCHHHHHHHHhhhhhcCch-hhcccccchHH
Confidence 456899999999999999999875 3478999999999999888887766554 56667777765
Q ss_pred cC----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 163 AL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.+ +.....||+|-+. -+-.+..+|..+.+.++.||.+.+.
T Consensus 172 ~lM~~~~~~~~~FDvIDLD----PyGs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 172 VLMYEHPMVAKFFDVIDLD----PYGSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred HHHHhccccccccceEecC----CCCCccHHHHHHHHHhhcCCEEEEE
Confidence 54 2334679998532 2234577899999999999999864
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.69 Score=41.16 Aligned_cols=98 Identities=15% Similarity=0.046 Sum_probs=73.8
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
++.+|.=+|.|. |.-+..++--. +++|+.+|.|.+.+.+....+. .++...-...
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl------------------gA~Vtild~n~~rl~~ldd~f~------~rv~~~~st~ 222 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL------------------GADVTILDLNIDRLRQLDDLFG------GRVHTLYSTP 222 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc------------------CCeeEEEecCHHHHhhhhHhhC------ceeEEEEcCH
Confidence 345788888886 66666666655 4999999999988877765543 3567776666
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEE
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
.++...-.+.|+++..-.+..-..+.-..+++.+.||||+.++
T Consensus 223 ~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 223 SNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred HHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 6554444579999987777777778888899999999999987
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=91.58 E-value=2.7 Score=37.37 Aligned_cols=97 Identities=21% Similarity=0.248 Sum_probs=60.4
Q ss_pred CCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 80 NPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
...++.+||..|+|. |..+..+++.. +.++++++.++...+.+++. +.. .+..
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~------------------G~~V~~~~~s~~~~~~~~~~----g~~----~~~~ 215 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM------------------GAAVIAVDIKEEKLELAKEL----GAD----EVLN 215 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc------------------CCEEEEEcCCHHHHHHHHHh----CCC----EEEc
Confidence 355677888888763 77777777775 36799999999887776442 211 1111
Q ss_pred cccccC-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 159 GDAEAL-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 159 ~d~~~~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
..-... ......+|+++-... ....+.++.+.|+++|.++....
T Consensus 216 ~~~~~~~~~~~~~~~~~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 216 SLDDSPKDKKAAGLGGGFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCCcCHHHHHHHhcCCCceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 110000 123346898874321 24567888999999999987543
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=3 Score=41.21 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=65.4
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHh-hhcCCC------CCceEEE
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRA-LERGYP------DKSLLWV 157 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~------~~~v~~~ 157 (288)
..|+-+|+|-|-+....++....-+ -..+++++|-+++.......+. ....|. ...|+++
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~g-------------vkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII 768 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALG-------------VRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVI 768 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcC-------------CcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEE
Confidence 3589999999998877777653111 1368999999966443333332 222332 1469999
Q ss_pred EcccccCCCCC-----------CCeeEEEeccccccccCH---HHHHHHHHhhccC----CcE
Q 036563 158 EGDAEALCFED-----------STMDGYTIAFGIRNVTHI---EKALAEAYRVLKR----GGR 202 (288)
Q Consensus 158 ~~d~~~~~~~~-----------~~~D~v~~~~~l~~~~~~---~~~l~~~~~~L~p----gG~ 202 (288)
..|+..+..+. +++|+|++ ..|..+-|. ...|.-+.+.||+ +|.
T Consensus 769 ~sDMR~W~~pe~~~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 769 VADGRTIATAAENGSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred eCcccccccccccccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 99998874321 26899886 223333322 4567777777776 665
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.31 E-value=1.1 Score=40.73 Aligned_cols=100 Identities=21% Similarity=0.203 Sum_probs=74.3
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..+|+|-=+|||.=++..+.+.+ .-+++.-|+||++.+..++++..+.. .+...+..|+..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-----------------~~~v~lNDisp~Avelik~Nv~~N~~--~~~~v~n~DAN~ 113 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-----------------VVKVVLNDISPKAVELIKENVRLNSG--EDAEVINKDANA 113 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-----------------ccEEEEccCCHHHHHHHHHHHHhcCc--ccceeecchHHH
Confidence 56899999999999999988874 23899999999999999999877622 345556666654
Q ss_pred CC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 164 LC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 164 ~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+- .....||+|=+ .-+-.+..++....+.++.+|.+-+.
T Consensus 114 lm~~~~~~fd~IDi----DPFGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 114 LLHELHRAFDVIDI----DPFGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred HHHhcCCCccEEec----CCCCCCchHHHHHHHHhhcCCEEEEE
Confidence 42 12256888742 22234677888889999999998863
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=91.26 E-value=1.5 Score=39.73 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=57.6
Q ss_pred CCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeC---ChhHHHHHHHHhhhcCCCCCceEE
Q 036563 81 PFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDI---NPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 81 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~---s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
..++.+||=+|+|. |.++..+++.. +.++++++. ++..++.+++. +.. .+..
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~------------------G~~vi~~~~~~~~~~~~~~~~~~----Ga~--~v~~ 225 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR------------------GFEVYVLNRRDPPDPKADIVEEL----GAT--YVNS 225 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc------------------CCeEEEEecCCCCHHHHHHHHHc----CCE--EecC
Confidence 34677899889875 66777777775 368888886 56655555432 211 1111
Q ss_pred EEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 157 VEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 157 ~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
...+.... .....+|+|+-... ....+....+.|+++|.+++....
T Consensus 226 ~~~~~~~~-~~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 226 SKTPVAEV-KLVGEFDLIIEATG------VPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred Cccchhhh-hhcCCCCEEEECcC------CHHHHHHHHHHccCCcEEEEEecC
Confidence 11111110 11235888874322 234678889999999999876543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.51 Score=45.58 Aligned_cols=95 Identities=17% Similarity=0.052 Sum_probs=60.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.+...|||+||.+|.+...+.+.++ .+.-|+|+|+-|-- .. +++..++.|+
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~p----------------v~slivGvDl~pik-----------p~--~~c~t~v~dI 93 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMP----------------VGSLIVGVDLVPIK-----------PI--PNCDTLVEDI 93 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCC----------------CCceEEEeeeeecc-----------cC--Cccchhhhhh
Confidence 4566899999999999999999985 46789999986631 01 3344444444
Q ss_pred cc----CC----CCCCCeeEEEeccccc----cccC-------HHHHHHHHHhhccCCcEEEE
Q 036563 162 EA----LC----FEDSTMDGYTIAFGIR----NVTH-------IEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 162 ~~----~~----~~~~~~D~v~~~~~l~----~~~~-------~~~~l~~~~~~L~pgG~l~i 205 (288)
.. .+ ....+.|+|+...+-. +..| ....|+-....|+.||.++-
T Consensus 94 ttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt 156 (780)
T KOG1098|consen 94 TTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT 156 (780)
T ss_pred hHHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence 32 11 2234468887654421 1111 13356667788899999764
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=90.31 E-value=8.4 Score=32.51 Aligned_cols=103 Identities=16% Similarity=0.099 Sum_probs=61.4
Q ss_pred CCCCeEEEecCCcc----HHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 82 FPGMKHLDVAGGTG----DVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 82 ~~~~~vLDiG~G~G----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.....|++..|+.| .++..++.+. -+++++++-+++..+...++.+...++. +.++|+
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~-----------------TgGR~vCIvp~~~~~~~~~~~l~~~~~~-~~vEfv 101 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQ-----------------TGGRHVCIVPDEQSLSEYKKALGEAGLS-DVVEFV 101 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHh-----------------cCCeEEEEcCChhhHHHHHHHHhhcccc-ccceEE
Confidence 34456889866543 2333333333 3589999999988888888888777665 557888
Q ss_pred Ecccc-cCCCCCCCeeEEEeccccccccCHH-HHHHHHHhhccCCcEEEEEe
Q 036563 158 EGDAE-ALCFEDSTMDGYTIAFGIRNVTHIE-KALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 158 ~~d~~-~~~~~~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i~~ 207 (288)
.++.. .+-..-...|.++..--. .+.. ++|+.+. +.|.|.+++..
T Consensus 102 vg~~~e~~~~~~~~iDF~vVDc~~---~d~~~~vl~~~~--~~~~GaVVV~~ 148 (218)
T PF07279_consen 102 VGEAPEEVMPGLKGIDFVVVDCKR---EDFAARVLRAAK--LSPRGAVVVCY 148 (218)
T ss_pred ecCCHHHHHhhccCCCEEEEeCCc---hhHHHHHHHHhc--cCCCceEEEEe
Confidence 88743 321111357887764432 2333 4444322 44667766543
|
The function of this family is unknown. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=90.23 E-value=4.9 Score=36.07 Aligned_cols=94 Identities=13% Similarity=0.035 Sum_probs=58.7
Q ss_pred cCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 79 LNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
...+++.+||=.|+|. |..+..+++.. +.++++++.++..++.+++. +.. ..+
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~------------------G~~vi~~~~~~~~~~~a~~~----Ga~----~vi 214 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ------------------GATVHVMTRGAAARRLALAL----GAA----SAG 214 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC------------------CCeEEEEeCChHHHHHHHHh----CCc----eec
Confidence 4556788999999764 55556666664 36789999988877766553 211 111
Q ss_pred EcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 158 EGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 158 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+.... ..+.+|+++.... ....+....+.|+++|++++...
T Consensus 215 --~~~~~--~~~~~d~~i~~~~------~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 215 --GAYDT--PPEPLDAAILFAP------AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred --ccccc--CcccceEEEECCC------cHHHHHHHHHhhCCCcEEEEEec
Confidence 11111 1234786653222 12468888899999999988654
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.20 E-value=2.5 Score=38.17 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=58.7
Q ss_pred CCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 81 PFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 81 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
..++.+||=+|||. |..+..+++... ...+++++|.++..++.+++ . + ..... .
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~----------------g~~~vi~~~~~~~k~~~a~~-~---~----~~~~~-~ 215 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIY----------------PESKLVVFGKHQEKLDLFSF-A---D----ETYLI-D 215 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhc----------------CCCcEEEEeCcHhHHHHHhh-c---C----ceeeh-h
Confidence 45678999999875 666666665421 13679999999887777654 1 1 11111 1
Q ss_pred ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+ .. ....+|+|+=.-. . ......+....++|+++|+++++...
T Consensus 216 ~---~~-~~~g~d~viD~~G--~-~~~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 216 D---IP-EDLAVDHAFECVG--G-RGSQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred h---hh-hccCCcEEEECCC--C-CccHHHHHHHHHhCcCCcEEEEEeec
Confidence 1 11 1114788863221 1 01345788889999999999876543
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=89.72 E-value=3.4 Score=37.72 Aligned_cols=99 Identities=20% Similarity=0.189 Sum_probs=59.8
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||=.|+|. |..+..+++.. +. +++++|.++..++.+++. +.. .
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~------------------G~~~Vi~~~~~~~r~~~a~~~----Ga~----~ 239 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAA------------------GASQVVAVDLNEDKLALAREL----GAT----A 239 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCCcEEEEcCCHHHHHHHHHc----CCc----e
Confidence 34456777888888764 66666666664 35 699999999888777542 211 1
Q ss_pred EEEccccc----C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 156 WVEGDAEA----L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 156 ~~~~d~~~----~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
++...-.+ + ....+.+|+++-.. .....+....+.|+++|.+++...
T Consensus 240 ~i~~~~~~~~~~i~~~~~~g~d~vid~~------G~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 240 TVNAGDPNAVEQVRELTGGGVDYAFEMA------GSVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred EeCCCchhHHHHHHHHhCCCCCEEEECC------CChHHHHHHHHHHhcCCEEEEEcc
Confidence 11111111 1 11122588887322 123467778889999999987654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=89.49 E-value=1.9 Score=39.50 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=76.9
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHH-------HHH
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVG-------KKR 143 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a-------~~~ 143 (288)
....+.+.+...+++.-.|+|+|-|.....++...+ ..+-.|+++....-+.+ ++.
T Consensus 180 ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~-----------------~k~svG~eim~~pS~~a~~~~~~~kk~ 242 (419)
T KOG3924|consen 180 QLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAG-----------------CKKSVGFEIMDKPSQCAELNKEEFKKL 242 (419)
T ss_pred HHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhc-----------------cccccceeeecCcHHHHHHHHHHHHHH
Confidence 345567788888899999999999999988888763 34556666544332222 222
Q ss_pred hhhcCCCCCceEEEEcccccCC---CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 144 ALERGYPDKSLLWVEGDAEALC---FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 144 ~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
....|-....+..+.+++.... ......++|+++++.-. ++...-+.++..-|++|-+++-.+.
T Consensus 243 ~k~fGk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 243 MKHFGKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred HHHhCCCcCceeecccccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEecccc
Confidence 2222322245777888765432 22345788888877433 3334445688888999999885443
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=89.43 E-value=4 Score=37.03 Aligned_cols=101 Identities=15% Similarity=0.118 Sum_probs=59.2
Q ss_pred cCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 79 LNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
....++.+||=.|+|. |..+..+++.. +. +++++|.++...+.+++. +.. .-+..
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~------------------G~~~Vi~~~~~~~~~~~~~~~----Ga~-~~i~~ 228 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALA------------------GASKIIAVDIDDRKLEWAREF----GAT-HTVNS 228 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCCeEEEEcCCHHHHHHHHHc----CCc-eEEcC
Confidence 3456788899888764 66666666665 24 599999998887777542 211 00111
Q ss_pred EEccccc-C-CC-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 157 VEGDAEA-L-CF-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 157 ~~~d~~~-~-~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
...+... + .. ....+|+++-.- .. ...+....+.++++|.+++...
T Consensus 229 ~~~~~~~~i~~~~~~~g~d~vid~~-----g~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 229 SGTDPVEAIRALTGGFGADVVIDAV-----GR-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCcCHHHHHHHHhCCCCCCEEEECC-----CC-HHHHHHHHHHhccCCEEEEECC
Confidence 1111100 0 01 123588886321 11 3456777889999999987654
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.34 E-value=3.8 Score=37.02 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=64.9
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..+++|+-||-|.+..-+.+.. -.-+.++|+++..++.-+.+.. ...+...|+..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag------------------f~~~~a~Eid~~a~~ty~~n~~-------~~~~~~~di~~ 57 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG------------------FEIVFANEIDPPAVATYKANFP-------HGDIILGDIKE 57 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC------------------CeEEEEEecCHHHHHHHHHhCC-------CCceeechHhh
Confidence 3589999999999997776652 2567789999998887777653 23456666655
Q ss_pred CC---CCCCCeeEEEecccccccc---------CHH----HHHHHHHhhccCCcEEEEEeccC
Q 036563 164 LC---FEDSTMDGYTIAFGIRNVT---------HIE----KALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 164 ~~---~~~~~~D~v~~~~~l~~~~---------~~~----~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.. +....+|+++.....+.++ |.. --+.++...++| .++++|...
T Consensus 58 ~~~~~~~~~~~DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~ 118 (328)
T COG0270 58 LDGEALRKSDVDVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVK 118 (328)
T ss_pred cChhhccccCCCEEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCc
Confidence 42 1111689999887766553 221 134555666677 555555433
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=88.97 E-value=5.3 Score=35.75 Aligned_cols=103 Identities=16% Similarity=0.098 Sum_probs=59.2
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCce-EEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETR-IYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||=+|+|. |..+..+++.. +.+ +++++.+++..+.+++. +.. .-+
T Consensus 157 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~------------------G~~~vi~~~~~~~~~~~~~~~----ga~-~~i 213 (339)
T cd08239 157 RRVGVSGRDTVLVVGAGPVGLGALMLARAL------------------GAEDVIGVDPSPERLELAKAL----GAD-FVI 213 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCCEEEEECCCHHHHHHHHHh----CCC-EEE
Confidence 344556688888888764 55666666665 355 99999988877766442 211 001
Q ss_pred EEEEcccccC-CC-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 155 LWVEGDAEAL-CF-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d~~~~-~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.....+...+ .. ....+|+++-.. .....+....+.|+++|.+++...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~d~vid~~------g~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 214 NSGQDDVQEIRELTSGAGADVAIECS------GNTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred cCCcchHHHHHHHhCCCCCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEcC
Confidence 1111111111 11 123589887322 123456677889999999987544
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.88 E-value=0.31 Score=42.94 Aligned_cols=98 Identities=20% Similarity=0.275 Sum_probs=66.8
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+..|+|+=+|-|.++...+-..+ ...|+++|.+|..++..+..+..+++. .+.....+|-..
T Consensus 195 ~eviVDLYAGIGYFTlpflV~ag-----------------Ak~V~A~EwNp~svEaLrR~~~~N~V~-~r~~i~~gd~R~ 256 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAG-----------------AKTVFACEWNPWSVEALRRNAEANNVM-DRCRITEGDNRN 256 (351)
T ss_pred cchhhhhhcccceEEeehhhccC-----------------ccEEEEEecCHHHHHHHHHHHHhcchH-HHHHhhhccccc
Confidence 45799999999999984444432 478999999999999999888776554 445556666554
Q ss_pred CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcE-EE
Q 036563 164 LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGR-FL 204 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~-l~ 204 (288)
.. +....|-|..... +.-++-...+.++|+|.|- ++
T Consensus 257 ~~-~~~~AdrVnLGLl----PSse~~W~~A~k~Lk~eggsil 293 (351)
T KOG1227|consen 257 PK-PRLRADRVNLGLL----PSSEQGWPTAIKALKPEGGSIL 293 (351)
T ss_pred cC-ccccchheeeccc----cccccchHHHHHHhhhcCCcEE
Confidence 43 4556777775443 3334444455677777443 44
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.69 E-value=0.52 Score=41.67 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=38.4
Q ss_pred ceEEEEcccccC--CCCCCCeeEEEecccccc------cc----------CHHHHHHHHHhhccCCcEEEEE
Q 036563 153 SLLWVEGDAEAL--CFEDSTMDGYTIAFGIRN------VT----------HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 153 ~v~~~~~d~~~~--~~~~~~~D~v~~~~~l~~------~~----------~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+-.++++|+.+. .++++++|+|+++..+.. .. -....+.++.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456788887664 356778999999665321 00 0246889999999999999874
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.46 Score=42.76 Aligned_cols=111 Identities=17% Similarity=0.115 Sum_probs=75.6
Q ss_pred HhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHH-------HHHHhhhcC
Q 036563 76 VSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNV-------GKKRALERG 148 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~-------a~~~~~~~~ 148 (288)
.......+|+.|.|.=.|||.+....+.- ++.+.|.||+-.++.. .+.++++.+
T Consensus 201 AN~Amv~pGdivyDPFVGTGslLvsaa~F-------------------Ga~viGtDIDyr~vragrg~~~si~aNFkQYg 261 (421)
T KOG2671|consen 201 ANQAMVKPGDIVYDPFVGTGSLLVSAAHF-------------------GAYVIGTDIDYRTVRAGRGEDESIKANFKQYG 261 (421)
T ss_pred hhhhccCCCCEEecCccccCceeeehhhh-------------------cceeeccccchheeecccCCCcchhHhHHHhC
Confidence 34445578889999999999998777665 4899999999887763 244556665
Q ss_pred CCCCceEEEEcccccCCC-CCCCeeEEEeccccc------------------------cccC---------HHHHHHHHH
Q 036563 149 YPDKSLLWVEGDAEALCF-EDSTMDGYTIAFGIR------------------------NVTH---------IEKALAEAY 194 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~-~~~~~D~v~~~~~l~------------------------~~~~---------~~~~l~~~~ 194 (288)
....=+.+..+|..+.++ ....||.|+|..... |.+. ....|.-..
T Consensus 262 ~~~~fldvl~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss 341 (421)
T KOG2671|consen 262 SSSQFLDVLTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSS 341 (421)
T ss_pred CcchhhheeeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhH
Confidence 432335667778776653 345799999965421 1111 123466777
Q ss_pred hhccCCcEEEE
Q 036563 195 RVLKRGGRFLC 205 (288)
Q Consensus 195 ~~L~pgG~l~i 205 (288)
+.|..||++++
T Consensus 342 ~~L~~ggrlv~ 352 (421)
T KOG2671|consen 342 RRLVDGGRLVF 352 (421)
T ss_pred hhhhcCceEEE
Confidence 88899999886
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.53 E-value=3.7 Score=35.83 Aligned_cols=99 Identities=17% Similarity=0.124 Sum_probs=58.5
Q ss_pred cCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 79 LNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
....++.+||=+|+|+ |..+..+++..+ ...++++|.++..++.+++. +.. .++
T Consensus 116 ~~~~~g~~VlV~G~G~vG~~~~~~ak~~G-----------------~~~Vi~~~~~~~r~~~a~~~----Ga~----~~i 170 (280)
T TIGR03366 116 AGDLKGRRVLVVGAGMLGLTAAAAAAAAG-----------------AARVVAADPSPDRRELALSF----GAT----ALA 170 (280)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcC-----------------CCEEEEECCCHHHHHHHHHc----CCc----Eec
Confidence 3344678899888865 666666666653 13488899888877766553 111 111
Q ss_pred Ec-cc-ccC-CC-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 158 EG-DA-EAL-CF-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 158 ~~-d~-~~~-~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.. +. ... .. ....+|+++-.. .....++...+.|+++|++++...
T Consensus 171 ~~~~~~~~~~~~~~~~g~d~vid~~------G~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 171 EPEVLAERQGGLQNGRGVDVALEFS------GATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CchhhHHHHHHHhCCCCCCEEEECC------CChHHHHHHHHHhcCCCEEEEecc
Confidence 10 10 000 01 123588886322 124467788899999999997654
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=88.32 E-value=2.9 Score=35.58 Aligned_cols=98 Identities=28% Similarity=0.352 Sum_probs=57.9
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
.++.+||-.|+|+ |..+..+++.. +.++++++.++...+.+++. +.. .-+.....+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~------------------g~~v~~~~~~~~~~~~~~~~----g~~-~~~~~~~~~ 189 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA------------------GARVIVTDRSDEKLELAKEL----GAD-HVIDYKEED 189 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc------------------CCeEEEEcCCHHHHHHHHHh----CCc-eeccCCcCC
Confidence 5678999999986 55666666654 37899999988776666432 110 001101001
Q ss_pred ccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 161 AEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 161 ~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
... . ......+|+++.... . ...+..+.+.|+++|.++....
T Consensus 190 ~~~~~~~~~~~~~d~vi~~~~-----~-~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 190 LEEELRLTGGGGADVVIDAVG-----G-PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred HHHHHHHhcCCCCCEEEECCC-----C-HHHHHHHHHhcccCCEEEEEcc
Confidence 000 0 112346899885332 1 1456777889999999987543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=88.11 E-value=1 Score=33.55 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=18.2
Q ss_pred CCCeEEEecCCccHHHHHHHHh
Q 036563 83 PGMKHLDVAGGTGDVAFRILDT 104 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~ 104 (288)
+...-+|+|||.|.+...+...
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E 79 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE 79 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC
Confidence 4557999999999998777776
|
; GO: 0008168 methyltransferase activity |
| >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2 | Back alignment and domain information |
|---|
Probab=87.81 E-value=2.4 Score=31.03 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=49.2
Q ss_pred CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHH
Q 036563 185 HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISD 264 (288)
Q Consensus 185 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 264 (288)
|..++|.++....+ |.+++ ...|..+.+..++. +|+++.+....-. ......+++++.+.+
T Consensus 12 d~~~~l~~La~~t~--~~~if--TfAP~T~~L~~m~~---------iG~lFP~~dRsp~------i~~~~e~~l~~~l~~ 72 (97)
T PF07109_consen 12 DAAQMLAHLASRTR--GSLIF--TFAPRTPLLALMHA---------IGKLFPRPDRSPR------IYPHREEDLRRALAA 72 (97)
T ss_pred HHHHHHHHHHHhcc--CcEEE--EECCCCHHHHHHHH---------HhccCCCCCCCCc------EEEeCHHHHHHHHHh
Confidence 56677777776543 55654 33455555544433 5666554432211 114478999999999
Q ss_pred cCCcEEEEEEeeCCee
Q 036563 265 AGFQKVEYENLVGGVV 280 (288)
Q Consensus 265 aGf~~v~~~~~~~~~~ 280 (288)
+||++...+....|++
T Consensus 73 ~g~~~~r~~ris~gFY 88 (97)
T PF07109_consen 73 AGWRIGRTERISSGFY 88 (97)
T ss_pred CCCeeeecccccCcCh
Confidence 9999999888877764
|
1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=87.03 E-value=0.81 Score=36.75 Aligned_cols=43 Identities=21% Similarity=0.092 Sum_probs=33.4
Q ss_pred CCCeeEEEecccccccc-----C------HHHHHHHHHhhccCCcEEEEEeccC
Q 036563 168 DSTMDGYTIAFGIRNVT-----H------IEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 168 ~~~~D~v~~~~~l~~~~-----~------~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.++||.+.+..+++|+- | ..+.+.++.++|||||.+++.-...
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 45799999998887762 2 2568899999999999999754433
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=87.00 E-value=3.4 Score=36.75 Aligned_cols=88 Identities=18% Similarity=0.149 Sum_probs=54.6
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
++.++|=+|||. |.++..+++..+ ...+.++|.++..++.+... . .+ |.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G-----------------~~~v~~~~~~~~rl~~a~~~----~-------~i--~~ 193 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAG-----------------GSPPAVWETNPRRRDGATGY----E-------VL--DP 193 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-----------------CceEEEeCCCHHHHHhhhhc----c-------cc--Ch
Confidence 456788888875 777777777753 23477788887766655321 0 01 11
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
... ....+|+|+-.- .....+..+.+.|+++|++++...
T Consensus 194 ~~~--~~~g~Dvvid~~------G~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 194 EKD--PRRDYRAIYDAS------GDPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred hhc--cCCCCCEEEECC------CCHHHHHHHHHhhhcCcEEEEEee
Confidence 110 123588887432 224467888899999999997654
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.64 E-value=3.2 Score=36.16 Aligned_cols=85 Identities=16% Similarity=0.179 Sum_probs=58.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.+++..+|+|+-+|.++-.+.+.. ..|+++|- ..|.+..- .. +.++....|.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~-------------------m~V~aVDn-g~ma~sL~----dt----g~v~h~r~DG 261 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRN-------------------MRVYAVDN-GPMAQSLM----DT----GQVTHLREDG 261 (358)
T ss_pred cCCceeeecccCCCccchhhhhcc-------------------eEEEEecc-chhhhhhh----cc----cceeeeeccC
Confidence 468999999999999999998874 89999995 44433221 11 5688888887
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhcc
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLK 198 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~ 198 (288)
.++.......|-.+|..+ ..+.++-.-+...|.
T Consensus 262 fk~~P~r~~idWmVCDmV----EkP~rv~~li~~Wl~ 294 (358)
T COG2933 262 FKFRPTRSNIDWMVCDMV----EKPARVAALIAKWLV 294 (358)
T ss_pred cccccCCCCCceEEeehh----cCcHHHHHHHHHHHH
Confidence 776444567898888776 334444444444444
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.12 E-value=8 Score=32.86 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=49.9
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+.++...+.-.+.-|.+||.|+|.++..+++.. ..++..++.++..+.-.+...+...
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~------------------~~RL~vVE~D~RFip~LQ~L~EAa~-- 97 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNAD------------------VARLLVVEKDTRFIPGLQMLSEAAP-- 97 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhcc------------------hhheeeeeeccccChHHHHHhhcCC--
Confidence 33556666665556789999999999999998874 3678888888877765554443322
Q ss_pred CCceEEEEccccc
Q 036563 151 DKSLLWVEGDAEA 163 (288)
Q Consensus 151 ~~~v~~~~~d~~~ 163 (288)
.+..+..+|+..
T Consensus 98 -~~~~IHh~D~LR 109 (326)
T KOG0821|consen 98 -GKLRIHHGDVLR 109 (326)
T ss_pred -cceEEeccccce
Confidence 356666666644
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=84.82 E-value=6.9 Score=34.94 Aligned_cols=94 Identities=23% Similarity=0.272 Sum_probs=56.5
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
.++.+||-.|||. |..+..+++..+ . ++++++.++...+.+++. +.. .++..
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G------------------~~~v~~~~~s~~~~~~~~~~----g~~----~vi~~ 217 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAG------------------AAEIVATDLADAPLAVARAM----GAD----ETVNL 217 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC------------------CcEEEEECCCHHHHHHHHHc----CCC----EEEcC
Confidence 3677888888765 666666666652 4 789999888877755432 111 11111
Q ss_pred c---cccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 160 D---AEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 160 d---~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+ ..........+|+++-... ....++...+.|+++|.++...
T Consensus 218 ~~~~~~~~~~~~~~vd~vld~~g------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 218 ARDPLAAYAADKGDFDVVFEASG------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CchhhhhhhccCCCccEEEECCC------CHHHHHHHHHHHhcCCEEEEEe
Confidence 1 1111111234888875322 1345778899999999998653
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=84.73 E-value=10 Score=34.84 Aligned_cols=99 Identities=19% Similarity=0.176 Sum_probs=59.8
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||=+|+|. |..+..+++..+ . +++++|.+++.++.+++. +.. .
T Consensus 193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G------------------~~~Vi~~~~~~~r~~~a~~~----Ga~----~ 246 (381)
T PLN02740 193 TANVQAGSSVAIFGLGAVGLAVAEGARARG------------------ASKIIGVDINPEKFEKGKEM----GIT----D 246 (381)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHCC------------------CCcEEEEcCChHHHHHHHHc----CCc----E
Confidence 34556788999999875 666666666653 5 699999999888877542 211 1
Q ss_pred EEEcc-----ccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEEec
Q 036563 156 WVEGD-----AEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCLEL 208 (288)
Q Consensus 156 ~~~~d-----~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 208 (288)
++... ... + ....+.+|+++-.. .....+......++++ |.++++..
T Consensus 247 ~i~~~~~~~~~~~~v~~~~~~g~dvvid~~------G~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 247 FINPKDSDKPVHERIREMTGGGVDYSFECA------GNVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred EEecccccchHHHHHHHHhCCCCCEEEECC------CChHHHHHHHHhhhcCCCEEEEEcc
Confidence 22111 111 1 11122588886422 2234677777888886 98877554
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=84.28 E-value=2.9 Score=37.11 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=50.4
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+++|+-||-|.+..-+.+.. ...+.++|+++.+.+.-+.+. + ....+|+.++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag------------------~~~~~a~e~~~~a~~~y~~N~-------~--~~~~~Di~~~~ 54 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG------------------FEVVWAVEIDPDACETYKANF-------P--EVICGDITEID 54 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT------------------EEEEEEEESSHHHHHHHHHHH-------T--EEEESHGGGCH
T ss_pred cEEEEccCccHHHHHHHhcC------------------cEEEEEeecCHHHHHhhhhcc-------c--ccccccccccc
Confidence 79999999999998887763 256789999999888877776 2 66778887763
Q ss_pred ---CCCCCeeEEEeccccccc
Q 036563 166 ---FEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 166 ---~~~~~~D~v~~~~~l~~~ 183 (288)
++. .+|+++.....+.+
T Consensus 55 ~~~l~~-~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 55 PSDLPK-DVDLLIGGPPCQGF 74 (335)
T ss_dssp HHHHHH-T-SEEEEE---TTT
T ss_pred cccccc-cceEEEeccCCceE
Confidence 443 59999987765544
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=83.96 E-value=6.1 Score=36.96 Aligned_cols=88 Identities=14% Similarity=0.153 Sum_probs=57.2
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
.++.+|+=+|+|. |......++.. +++++++|.++..+..+++. + .... +
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~------------------Ga~ViV~d~d~~R~~~A~~~----G-----~~~~--~ 250 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ------------------GARVIVTEVDPICALQAAME----G-----YEVM--T 250 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC------------------CCEEEEEECChhhHHHHHhc----C-----CEEc--c
Confidence 4678999999997 77666666665 37899999998877666542 2 1211 1
Q ss_pred cccCCCCCCCeeEEEeccccccccCHHHHHHH-HHhhccCCcEEEEEe
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVTHIEKALAE-AYRVLKRGGRFLCLE 207 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~-~~~~L~pgG~l~i~~ 207 (288)
..+. . ...|+|+... .....+.. ..+.+++||.++.+.
T Consensus 251 ~~e~-v--~~aDVVI~at------G~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 251 MEEA-V--KEGDIFVTTT------GNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred HHHH-H--cCCCEEEECC------CCHHHHHHHHHhcCCCCcEEEEeC
Confidence 1111 1 2479887532 22345554 488999999998754
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.79 E-value=0.71 Score=42.69 Aligned_cols=64 Identities=23% Similarity=0.249 Sum_probs=52.5
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
.+++..|-|+-||-|-++..++.. ++.+++.|.++++++..+.++.-+.+...++..+..|
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK-------------------~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmd 307 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK-------------------GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMD 307 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc-------------------CcEEEecCCCHHHHHHHHHhccccccchhheeeeccc
Confidence 356778999999999999888886 4999999999999999999987776663447777776
Q ss_pred ccc
Q 036563 161 AEA 163 (288)
Q Consensus 161 ~~~ 163 (288)
+..
T Consensus 308 a~~ 310 (495)
T KOG2078|consen 308 AKD 310 (495)
T ss_pred HHH
Confidence 543
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.68 E-value=2.6 Score=38.60 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=63.9
Q ss_pred HhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 76 VSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
...+.+.++.+|+|.+|.+|.-+.+++.... +..+++++|.+....+..++.+...+.. .+.
T Consensus 206 A~ll~p~~g~~v~d~caapg~KTsH~a~i~~----------------n~gki~afe~d~~r~~tl~~~l~~ag~~--~~~ 267 (413)
T KOG2360|consen 206 AHLLDPRPGSRVIDTCAAPGNKTSHLAAIMR----------------NQGKIYAFERDAKRAATLRKLLKIAGVS--IVE 267 (413)
T ss_pred hhhcCCCCCCceeeeccccccchhhHHHHhh----------------ccCCcchhhhhhHHHHHHHHHHHHcCCC--ccc
Confidence 4455677889999999999999999988875 4689999999999999888888877764 566
Q ss_pred EEEcccccCCCCC--CCeeEEEeccc
Q 036563 156 WVEGDAEALCFED--STMDGYTIAFG 179 (288)
Q Consensus 156 ~~~~d~~~~~~~~--~~~D~v~~~~~ 179 (288)
...+|+...+.+. .....+++...
T Consensus 268 ~~~~df~~t~~~~~~~~v~~iL~Dps 293 (413)
T KOG2360|consen 268 SVEGDFLNTATPEKFRDVTYILVDPS 293 (413)
T ss_pred cccccccCCCCcccccceeEEEeCCC
Confidence 6678877642111 22445555444
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.41 E-value=8.6 Score=35.01 Aligned_cols=96 Identities=24% Similarity=0.231 Sum_probs=53.7
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc-
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG- 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~- 159 (288)
.++.+||=.|+|. |..+..+++.. +.++++++.++.....+.+. .+.. .++..
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~------------------Ga~vi~~~~~~~~~~~~~~~---~Ga~----~vi~~~ 236 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF------------------GLKVTVISSSSNKEDEAINR---LGAD----SFLVST 236 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC------------------CCEEEEEeCCcchhhhHHHh---CCCc----EEEcCC
Confidence 4677888888875 66777777765 36788888776543322222 2211 11110
Q ss_pred ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+...+....+.+|+++-... ....+....+.|+++|.++.+..
T Consensus 237 ~~~~~~~~~~~~D~vid~~g------~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 237 DPEKMKAAIGTMDYIIDTVS------AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred CHHHHHhhcCCCCEEEECCC------CHHHHHHHHHHhcCCcEEEEeCC
Confidence 10111101124788763221 23367778899999999987643
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.33 E-value=2.8 Score=39.53 Aligned_cols=112 Identities=20% Similarity=0.143 Sum_probs=71.9
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.++|-+|-|.|.+...+...+ +...+++++++|.|++.+.+.+.-..- .+..+...|...
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~-----------------p~~~i~~ve~dP~~l~va~q~f~f~q~--~r~~V~i~dGl~ 356 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSL-----------------PKFQITAVEIDPEMLEVATQYFGFMQS--DRNKVHIADGLD 356 (482)
T ss_pred cCcEEEEecCCCccccceeeec-----------------CccceeEEEEChhHhhccHhhhchhhh--hhhhhhHhhchH
Confidence 4578888999999988888777 468999999999999999887542210 111122122211
Q ss_pred C-------CCCCCCeeEEEeccc---cccccC------HHHHHHHHHhhccCCcEEEEEeccCCChHH
Q 036563 164 L-------CFEDSTMDGYTIAFG---IRNVTH------IEKALAEAYRVLKRGGRFLCLELSHVDIPV 215 (288)
Q Consensus 164 ~-------~~~~~~~D~v~~~~~---l~~~~~------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~ 215 (288)
. .-.+..||+++..-. .|.... ...+|..++..|.|.|.+++. ...++.++
T Consensus 357 ~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in-lv~r~~~~ 423 (482)
T KOG2352|consen 357 FLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN-LVTRNSSF 423 (482)
T ss_pred HHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE-EecCCcch
Confidence 1 123456898876322 222221 255899999999999999764 33444443
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.11 E-value=11 Score=34.10 Aligned_cols=102 Identities=19% Similarity=0.219 Sum_probs=61.1
Q ss_pred hcCCCCCCeEEEecC-C-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAG-G-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||=.|+ | .|..+..+++.. +.++++++.++...+.+++.+ +.. .-+.
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~------------------G~~Vi~~~~~~~k~~~~~~~l---Ga~-~vi~ 210 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLH------------------GCYVVGSAGSSQKVDLLKNKL---GFD-EAFN 210 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc------------------CCEEEEEcCCHHHHHHHHHhc---CCC-EEEE
Confidence 345567889998887 3 577888888875 378899988887766655322 211 0111
Q ss_pred EEEc-cccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 156 WVEG-DAEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 156 ~~~~-d~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.... +... + ....+.+|+++-... ...+....+.|+++|.+++...
T Consensus 211 ~~~~~~~~~~i~~~~~~gvD~v~d~vG-------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 211 YKEEPDLDAALKRYFPEGIDIYFDNVG-------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CCCcccHHHHHHHHCCCCcEEEEECCC-------HHHHHHHHHHhccCCEEEEECc
Confidence 1111 1111 1 111235888873221 2367788899999999987543
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=83.09 E-value=2.8 Score=38.55 Aligned_cols=100 Identities=14% Similarity=0.017 Sum_probs=53.8
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
++.+|+=+|+|. |..+...+... +.+++++|.++..++.+...... .+.....+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l------------------Ga~V~v~d~~~~~~~~l~~~~g~------~v~~~~~~~ 221 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL------------------GATVTILDINIDRLRQLDAEFGG------RIHTRYSNA 221 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC------------------CCeEEEEECCHHHHHHHHHhcCc------eeEeccCCH
Confidence 456799998874 66666666654 36899999988766555433211 111111111
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..+...-..+|+|+..........+.-+-++..+.++|++.++-+
T Consensus 222 ~~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 222 YEIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred HHHHHHHccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence 111101135899986543211111211224555668999887743
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=82.96 E-value=4.3 Score=36.33 Aligned_cols=76 Identities=9% Similarity=0.000 Sum_probs=52.0
Q ss_pred EEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC---
Q 036563 88 LDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL--- 164 (288)
Q Consensus 88 LDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~--- 164 (288)
+|||.|.-.+-..+-... .+....++|++....+.++++..+.++. ..+.++.....+-
T Consensus 107 iDIgtgasci~~llg~rq-----------------~n~~f~~teidd~s~~~a~snV~qn~ls-s~ikvV~~~~~ktll~ 168 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQ-----------------NNWYFLATEIDDMSFNYAKSNVEQNNLS-SLIKVVKVEPQKTLLM 168 (419)
T ss_pred eeccCchhhhHHhhhchh-----------------ccceeeeeeccccccchhhccccccccc-cceeeEEecchhhcch
Confidence 688877765544443332 3588999999999999999999888876 5565555533221
Q ss_pred ----CCCCCCeeEEEeccccc
Q 036563 165 ----CFEDSTMDGYTIAFGIR 181 (288)
Q Consensus 165 ----~~~~~~~D~v~~~~~l~ 181 (288)
..++..||.+.|+..+.
T Consensus 169 d~~~~~~e~~ydFcMcNPPFf 189 (419)
T KOG2912|consen 169 DALKEESEIIYDFCMCNPPFF 189 (419)
T ss_pred hhhccCccceeeEEecCCchh
Confidence 12344699999988753
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.62 E-value=14 Score=33.26 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=57.2
Q ss_pred CCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCce-EEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 80 NPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETR-IYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
...++.+||=.|+|+ |..+..+++..+ .+ +++++.++..++.+++. +.. .-+...
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G------------------~~~v~~~~~~~~~~~~~~~~----Ga~-~~i~~~ 213 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALG------------------AKSVTAIDINSEKLALAKSL----GAM-QTFNSR 213 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCeEEEECCCHHHHHHHHHc----CCc-eEecCc
Confidence 445677888888865 666666666653 54 78899888877766432 211 001111
Q ss_pred EcccccC-C-CCCCCee-EEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 158 EGDAEAL-C-FEDSTMD-GYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 158 ~~d~~~~-~-~~~~~~D-~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
..+.... . .....+| +++- .. .....+....+.|+++|.+++....
T Consensus 214 ~~~~~~~~~~~~~~~~d~~v~d-----~~-G~~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 214 EMSAPQIQSVLRELRFDQLILE-----TA-GVPQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred ccCHHHHHHHhcCCCCCeEEEE-----CC-CCHHHHHHHHHHhhcCCEEEEEccC
Confidence 1111111 0 1123466 5442 11 2245778888999999999986543
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.44 E-value=4.2 Score=37.31 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=33.4
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHH
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKK 142 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~ 142 (288)
-..++|+|+|.|.++..+.-.+ +..|.++|-|....+.|++
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y------------------~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGY------------------GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhcc------------------CceEEEeccchHHHHHHHH
Confidence 3579999999999999888776 4899999998766665543
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=82.12 E-value=13 Score=30.31 Aligned_cols=137 Identities=18% Similarity=0.096 Sum_probs=67.0
Q ss_pred CceEEEEeCChhHHHHHHHHhhhc-------C-CC-------CCceEEEEcccccCCCCCCCeeEEEeccccccccCHHH
Q 036563 124 ETRIYVCDINPNMLNVGKKRALER-------G-YP-------DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEK 188 (288)
Q Consensus 124 ~~~v~~~D~s~~~~~~a~~~~~~~-------~-~~-------~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~ 188 (288)
+.+|+.+|.+++.++.+++.+... + .. ..++. ...|+.... ..|+|+=.- .+..+-...
T Consensus 22 G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~----~adlViEai-~E~l~~K~~ 95 (180)
T PF02737_consen 22 GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV----DADLVIEAI-PEDLELKQE 95 (180)
T ss_dssp TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC----TESEEEE-S--SSHHHHHH
T ss_pred CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh----hhheehhhc-cccHHHHHH
Confidence 489999999999998887765541 1 10 01233 234444331 478886432 222223467
Q ss_pred HHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCC----ChHHHHHHHHH
Q 036563 189 ALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFP----PQEKFAAMISD 264 (288)
Q Consensus 189 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~ 264 (288)
+++++.+.+.|+-.|.....+.+ ...+..... .-.+.+|-.+..+.. ...+.+-+.... ..+.+.+++++
T Consensus 96 ~~~~l~~~~~~~~ilasnTSsl~----i~~la~~~~-~p~R~ig~Hf~~P~~-~~~lVEvv~~~~T~~~~~~~~~~~~~~ 169 (180)
T PF02737_consen 96 LFAELDEICPPDTILASNTSSLS----ISELAAALS-RPERFIGMHFFNPPH-LMPLVEVVPGPKTSPETVDRVRALLRS 169 (180)
T ss_dssp HHHHHHCCS-TTSEEEE--SSS-----HHHHHTTSS-TGGGEEEEEE-SSTT-T--EEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCceEEecCCCCC----HHHHHhccC-cCceEEEEecccccc-cCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 89999999999988875433322 222222111 222233333332221 111111111111 34667788888
Q ss_pred cCCcEEEE
Q 036563 265 AGFQKVEY 272 (288)
Q Consensus 265 aGf~~v~~ 272 (288)
.|...+.+
T Consensus 170 ~gk~pv~v 177 (180)
T PF02737_consen 170 LGKTPVVV 177 (180)
T ss_dssp TT-EEEEE
T ss_pred CCCEEEEe
Confidence 88887766
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=81.59 E-value=27 Score=33.94 Aligned_cols=91 Identities=11% Similarity=0.039 Sum_probs=54.3
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.+|+=+||| ..+..+++.... .+.+++.+|.+++..+.+++ .....+.+|+.+.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~---------------~g~~vvvId~d~~~~~~~~~---------~g~~~i~GD~~~~ 471 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLA---------------AGIPLVVIETSRTRVDELRE---------RGIRAVLGNAANE 471 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHH---------------CCCCEEEEECCHHHHHHHHH---------CCCeEEEcCCCCH
Confidence 356655555 555566665421 24789999999988777754 2467888998764
Q ss_pred C----CCCCCeeEEEeccccccccCHH-HHHHHHHhhccCCcEEEE
Q 036563 165 C----FEDSTMDGYTIAFGIRNVTHIE-KALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 165 ~----~~~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i 205 (288)
. ..-+++|.+++.-. +|.. ..+-.+.+...|+..++.
T Consensus 472 ~~L~~a~i~~a~~viv~~~----~~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 472 EIMQLAHLDCARWLLLTIP----NGYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred HHHHhcCccccCEEEEEcC----ChHHHHHHHHHHHHHCCCCeEEE
Confidence 2 22346786664322 1122 123334455677777775
|
|
| >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.13 E-value=1.1 Score=37.72 Aligned_cols=93 Identities=23% Similarity=0.298 Sum_probs=66.7
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+..+..+.+.++...+|.--|.|.-+..+++.+ +..++++.|.+|.+.+.+.-...+. .+
T Consensus 31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~-----------------se~k~yalDrDP~A~~La~~~s~el-~~ 92 (303)
T KOG2782|consen 31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKH-----------------SELKNYALDRDPVARKLAHFHSDEL-MH 92 (303)
T ss_pred ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhC-----------------cHhhhhhhccChHHHHHHHHhhHhh-cc
Confidence 44677888988899999999999999999999998 4688999999998888776655322 11
Q ss_pred CCceEEEEcccccC-------CCCCCCeeEEEecccccc
Q 036563 151 DKSLLWVEGDAEAL-------CFEDSTMDGYTIAFGIRN 182 (288)
Q Consensus 151 ~~~v~~~~~d~~~~-------~~~~~~~D~v~~~~~l~~ 182 (288)
+.+..+.+.+..+ ...+.++|-|++.+....
T Consensus 93 -~~l~a~Lg~Fs~~~~l~~~~gl~~~~vDGiLmDlGcSS 130 (303)
T KOG2782|consen 93 -PTLKAVLGNFSYIKSLIADTGLLDVGVDGILMDLGCSS 130 (303)
T ss_pred -hhHHHHHhhhHHHHHHHHHhCCCcCCcceEEeecCccc
Confidence 2333333333332 245677888888766543
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=80.22 E-value=9 Score=29.49 Aligned_cols=89 Identities=17% Similarity=0.108 Sum_probs=46.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..+|+|+|-|.-.-....++.. +..++++|+++.. + . ..+.++..|+.+
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~------------------G~dV~~tDi~~~~---a----~------~g~~~v~DDif~ 62 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER------------------GFDVIATDINPRK---A----P------EGVNFVVDDIFN 62 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH------------------S-EEEEE-SS-S-----------------STTEE---SSS
T ss_pred CCcEEEECcCCCHHHHHHHHHc------------------CCcEEEEECcccc---c----c------cCcceeeecccC
Confidence 3599999999866555555554 3899999998871 1 1 257788888876
Q ss_pred CCCC-CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 164 LCFE-DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 164 ~~~~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.... =...|+|.+... .++....+.++.+.+ |.-+++..+
T Consensus 63 P~l~iY~~a~lIYSiRP---P~El~~~il~lA~~v--~adlii~pL 103 (127)
T PF03686_consen 63 PNLEIYEGADLIYSIRP---PPELQPPILELAKKV--GADLIIRPL 103 (127)
T ss_dssp --HHHHTTEEEEEEES-----TTSHHHHHHHHHHH--T-EEEEE-B
T ss_pred CCHHHhcCCcEEEEeCC---ChHHhHHHHHHHHHh--CCCEEEECC
Confidence 5311 125899987443 345556666666543 566665433
|
; PDB: 2K4M_A. |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.17 E-value=25 Score=32.03 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=59.8
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||=.|+|. |..+..+++..+ . +++++|.++..++.+++. +.. .-+.
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G------------------~~~Vi~~~~~~~~~~~a~~~----Ga~-~~i~ 236 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAK------------------ASRIIAIDINPAKFELAKKL----GAT-DCVN 236 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCeEEEEcCCHHHHHHHHHh----CCC-eEEc
Confidence 34556788899889865 666677777653 5 799999999888777542 211 0011
Q ss_pred EEE--ccccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEEec
Q 036563 156 WVE--GDAEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCLEL 208 (288)
Q Consensus 156 ~~~--~d~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 208 (288)
... .+... + ....+.+|+++-.- .....+....+.++++ |.++++..
T Consensus 237 ~~~~~~~~~~~v~~~~~~g~d~vid~~------G~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 237 PNDYDKPIQEVIVEITDGGVDYSFECI------GNVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred ccccchhHHHHHHHHhCCCCCEEEECC------CCHHHHHHHHHHhhcCCCeEEEEec
Confidence 110 01100 0 01122578876321 1234577778889886 99887654
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 288 | ||||
| 1vl5_A | 260 | Crystal Structure Of A Putative Methyltransferase ( | 4e-05 | ||
| 1xxl_A | 239 | The Crystal Structure Of Ycgj Protein From Bacillus | 4e-05 | ||
| 3ege_A | 261 | Crystal Structure Of Putative Methyltransferase Fro | 6e-04 |
| >pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331) From Bacillus Halodurans C-125 At 1.95 A Resolution Length = 260 | Back alignment and structure |
|
| >pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus Subitilis At 2.1 A Resolution Length = 239 | Back alignment and structure |
|
| >pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From Antibiotic Biosynthesis Pathway (Yp_324569.1) From Anabaena Variabilis Atcc 29413 At 2.40 A Resolution Length = 261 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 243 bits (622), Expect = 5e-81
Identities = 33/228 (14%), Positives = 72/228 (31%), Gaps = 29/228 (12%)
Query: 67 LHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETR 126
+ + L + LD+ G+G ++ + +
Sbjct: 16 SSLDLYPIIHNYLQE--DDEILDIGCGSGKISLELAS-------------------KGYS 54
Query: 127 IYVCDINPNMLNVGKKRALERGYPDKSLL---WVEGDAEALCFEDSTMDGYTIAFGIRNV 183
+ DIN + + + A G K+ + +A +L F DS+ D + + +V
Sbjct: 55 VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSV 114
Query: 184 THIE---KALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRG 240
+ + + E +RVLK G +E + F + G +A D
Sbjct: 115 PDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDP- 173
Query: 241 SYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288
E + +++ +++D F+ + + L
Sbjct: 174 -ETGETEFIAHHFTEKELVFLLTDCRFEIDYFRVKELETRTGNKILGF 220
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 5e-66
Identities = 39/240 (16%), Positives = 79/240 (32%), Gaps = 33/240 (13%)
Query: 45 VSNVF-SSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILD 103
+++ F S K D + L ++ K + GM LDV G G +
Sbjct: 3 LAHKFDPSKIKKLDDPSRLELFDPEKVLK-----EFGLKEGMTVLDVGTGAGFYLPYLSK 57
Query: 104 TVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163
V E+ ++Y D+ M+N ++ + G + + ++ +
Sbjct: 58 MVG----------------EKGKVYAIDVQEEMVNYAWEKVNKLGLKN--VEVLKSEENK 99
Query: 164 LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYY 223
+ D+T+D +AF ++ K L E RV K ++ + + Y
Sbjct: 100 IPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVY 159
Query: 224 S----FSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMIS-----DAGFQKVEYEN 274
S ++ G V +Y QE+ +++ G + +
Sbjct: 160 SEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMIVKQEEENPLMNVPFKIPPGEGHHHHHH 219
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 4e-63
Identities = 46/233 (19%), Positives = 81/233 (34%), Gaps = 47/233 (20%)
Query: 45 VSNVFSSVAKNYDLMNDLMSGGLHRLWKD--RLVSKLNPFPGMKHLDVAGGTGDVAFRIL 102
+ Y ++ +H D +L+ + LDVA G G VA
Sbjct: 3 SDKIHHHHHHMY------VTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFA 56
Query: 103 DTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162
V ++ D+ ++L V + G+ + +V+GDAE
Sbjct: 57 PFVK-------------------KVVAFDLTEDILKVARAFIEGNGHQQ--VEYVQGDAE 95
Query: 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDY 222
+ F D T + + ++EAYRVLK+GG+ L ++ S + F Y+Y
Sbjct: 96 QMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNY 155
Query: 223 YSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275
+R + R + + M+ +AGF+ E
Sbjct: 156 VEK------------ERDYSHH------RAWKKSDWLKMLEEAGFELEELHCF 190
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 1e-61
Identities = 38/254 (14%), Positives = 76/254 (29%), Gaps = 33/254 (12%)
Query: 37 PAEEKSQLVSNVFSSVAKNYDLMNDLMSGGL-HRLWKDRLVSKLNPFPGMKHLDVAGGTG 95
+ +A+ YD M + L HRL L L + LD+ GGTG
Sbjct: 9 HHHHMKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKN--PCRVLDLGGGTG 66
Query: 96 DVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155
+ + + + + D + ML V +++ ++
Sbjct: 67 KWSLFLQERG-------------------FEVVLVDPSKEMLEVAREKGVKN-------- 99
Query: 156 WVEGDAEALCFEDSTMDG-YTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIP 214
VE AE L F + + + V + +KA +E RVL G + +
Sbjct: 100 VVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY--T 157
Query: 215 VFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274
+++ + ++ I + G+ + S P + +
Sbjct: 158 FLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFETVDIRGIGVME 217
Query: 275 LVGGVVAIHSGLKI 288
++
Sbjct: 218 YPDERISEREETIF 231
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 3e-59
Identities = 49/231 (21%), Positives = 83/231 (35%), Gaps = 38/231 (16%)
Query: 47 NVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVN 106
+ F+S+A+ Y+ G ++R + L P PG L+V GTG R+
Sbjct: 1 DPFASLAEAYEAWYGTPLGAYVIAEEERALKGLLP-PGESLLEVGAGTGYWLRRL----- 54
Query: 107 SIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCF 166
+ + + ML VG++RA E WV EAL F
Sbjct: 55 ----------------PYPQKVGVEPSEAMLAVGRRRAPE-------ATWVRAWGEALPF 91
Query: 167 EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVD--IPVFKELYD--- 221
+ D + + V +E+ L EA RVL+ GG + L + +++ L +
Sbjct: 92 PGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGV 151
Query: 222 ----YYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQ 268
F + L+ + + + PP E+ AG +
Sbjct: 152 LPWAQARFLAREDLKALLGPPEAEGEAVFLAPEAHPPYEEADLAGRRAGNR 202
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 4e-59
Identities = 40/209 (19%), Positives = 76/209 (36%), Gaps = 26/209 (12%)
Query: 63 MSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQ 122
M+ H ++ + LD+ G G A V
Sbjct: 1 MAHHHHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV----------------- 43
Query: 123 EETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN 182
D M+ V A E+G ++ + +G AE+L F D + D T + +
Sbjct: 44 --QECIGVDATKEMVEVASSFAQEKGVE--NVRFQQGTAESLPFPDDSFDIITCRYAAHH 99
Query: 183 VTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDR--- 239
+ + KA+ E RVLK+ GRFL ++ + PV E ++ + P+ +
Sbjct: 100 FSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQA 159
Query: 240 --GSYQYLVESVRRFPPQEKFAAMISDAG 266
+ Q + ++++ ++ + I G
Sbjct: 160 MFSANQLAYQDIQKWNLPIQYDSWIKRGG 188
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 2e-54
Identities = 38/237 (16%), Positives = 77/237 (32%), Gaps = 33/237 (13%)
Query: 42 SQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRI 101
S+ AKN D ++ + ++ + + ++++ G +D+ G G ++ +
Sbjct: 3 SENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSIAL 61
Query: 102 LDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161
+ I D + +M + K + D+ + V+GD
Sbjct: 62 AKQSD------------------FSIRALDFSKHMNEIALKNIADANLNDR-IQIVQGDV 102
Query: 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYD 221
+ ED+ D + + A E YR+LK GG+ KEL D
Sbjct: 103 HNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIG-----GGFGNKELRD 157
Query: 222 YYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGG 278
+I + ++ E+F ++ + G E G
Sbjct: 158 --------SISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEG 206
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 6e-48
Identities = 38/243 (15%), Positives = 79/243 (32%), Gaps = 29/243 (11%)
Query: 45 VSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDT 104
+ F +V+ YD + + LD+ GTG ++ +++
Sbjct: 6 IKRKFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEK 65
Query: 105 VNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164
E + D++ ML + K R + + ++E D
Sbjct: 66 YP-----------------EATFTLVDMSEKMLEIAKNRFRG----NLKVKYIEADYSKY 104
Query: 165 CFEDSTMDGYTIAFGIRNVTHIEKA--LAEAYRVLKRGGRFLCLELSHVDIPVFKELYDY 222
FE+ D A I ++ +K +Y +LK G F+ +L H + + L
Sbjct: 105 DFEEK-YDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKT 163
Query: 223 YSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVE--YENLV-GGV 279
+ G + + + Y + + + + +AGF+ V Y+ +
Sbjct: 164 IWRQYVENSG--LTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVM 221
Query: 280 VAI 282
Sbjct: 222 FGR 224
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 3e-38
Identities = 37/215 (17%), Positives = 67/215 (31%), Gaps = 25/215 (11%)
Query: 45 VSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDT 104
+S+ A YD + ++ + L++ GTG +A ++
Sbjct: 1 MSSALLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR 60
Query: 105 VNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164
R D + ML V +++ + V+ DA A+
Sbjct: 61 G-------------------YRYIALDADAAMLEVFRQKIAGVDRK---VQVVQADARAI 98
Query: 165 CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL---ELSHVDIPVFKELYD 221
D ++ G + V K LAEA RVLK GG L + + + +
Sbjct: 99 PLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRA 158
Query: 222 YYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQE 256
+ + P L A + + + P
Sbjct: 159 FAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTR 193
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 5e-38
Identities = 38/225 (16%), Positives = 72/225 (32%), Gaps = 31/225 (13%)
Query: 49 FSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSI 108
+ Y L + L PG K L+ G G +
Sbjct: 3 LTEYVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNN--- 59
Query: 109 KRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFED 168
+ I DI+P L ++ + G + +++ + +L FED
Sbjct: 60 --------------PDAEITSIDISPESLEKARENTEKNGIKNVK--FLQANIFSLPFED 103
Query: 169 STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVI 228
S+ D + F + ++ E+AL +VLK GG +E D+ S
Sbjct: 104 SSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE------------GDHGSCYFH 151
Query: 229 PAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYE 273
P + + + + ++ ++GF+K+ E
Sbjct: 152 PEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVE 196
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 3e-37
Identities = 40/240 (16%), Positives = 80/240 (33%), Gaps = 55/240 (22%)
Query: 37 PAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGD 96
+ ++F Y+ + + L + P + +++ GTG
Sbjct: 5 KIHHHHHHMWHIFERFVNEYERWFLVHRF----AYLSELQAVKCLLPEGRGVEIGVGTGR 60
Query: 97 VAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156
A + + + + M + +KR +
Sbjct: 61 FAVPLKIKIG-----------------------VEPSERMAEIARKRGVF---------V 88
Query: 157 VEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVF 216
++G AE L +D + D + I V E+AL EAYR+LK+GG + +
Sbjct: 89 LKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIV-------- 140
Query: 217 KELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276
D SF +G ++ + + RF E+ ++ AGF++ + +
Sbjct: 141 ----DRESF-----LGREYEKNKEKSVFYKNA--RFFSTEELMDLMRKAGFEEFKVVQTL 189
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 6e-37
Identities = 32/242 (13%), Positives = 62/242 (25%), Gaps = 42/242 (17%)
Query: 52 VAKNYDLMNDLMSGGL----HRLWKDR------LVSKLNPFPGMKHLDVAGGTGDVAFRI 101
+ K D + DLM+ G + + + + PG K L++ G GD++ +
Sbjct: 2 MEKRLDYITDLMALGPTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVL 61
Query: 102 LDTVNSIKRRALQDVLEDDLQEETRIYVCDINPN------MLNVGKKRALERGYPDK-SL 154
D V + DI L L D+ ++
Sbjct: 62 ADQVG----------------SSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTV 105
Query: 155 LWVEGDAEALC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDI 213
+ ++ L D D +A + + E S
Sbjct: 106 HFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPT 165
Query: 214 PVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYE 273
+ + + G L A +R + A + D +
Sbjct: 166 ALDQIGHLQA----AMIQGLLYAIAPSDVAN----IRTLITPDTLAQIAHDNTWTYTAGT 217
Query: 274 NL 275
+
Sbjct: 218 IV 219
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 4e-35
Identities = 42/235 (17%), Positives = 71/235 (30%), Gaps = 51/235 (21%)
Query: 47 NVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPF------PGMKHLDVAGGTGDVAFR 100
N S K +D + + +W S + PF + LDV G G ++
Sbjct: 11 NWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYK 70
Query: 101 ILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160
+ T + DI+ M+ GK+R L +++GD
Sbjct: 71 LSRTGY-------------------KAVGVDISEVMIQKGKERGEGPD-----LSFIKGD 106
Query: 161 AEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELY 220
+L FE+ + + +AL E RVLK G L P
Sbjct: 107 LSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYP 166
Query: 221 DYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275
Y V+ +F ++ + GF+ V+ +
Sbjct: 167 RLYGKDVVC---------------------NTMMPWEFEQLVKEQGFKVVDGIGV 200
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-29
Identities = 34/228 (14%), Positives = 80/228 (35%), Gaps = 36/228 (15%)
Query: 47 NVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVN 106
++++S+ K Y + +++ LN G D+ GTG + + +
Sbjct: 3 SIYNSIGKQYSQTR-----VPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL 57
Query: 107 SIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCF 166
+Y + + M + W G AE L
Sbjct: 58 -------------------FVYAVEPSIVMRQQAVVHP--------QVEWFTGYAENLAL 90
Query: 167 EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRF-LCLELSHVDIPVFKELYDYYSF 225
D ++DG I + +H+EK+ E R+++ G L ++ + + +
Sbjct: 91 PDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWE 150
Query: 226 SVI--PAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVE 271
+ + E + + + + VE++ P + + + + A +++ E
Sbjct: 151 DALRFLPLDEQINLLQENTKRRVEAIPFLLPHD-LSDLFAAAAWRRPE 197
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 1e-26
Identities = 42/253 (16%), Positives = 76/253 (30%), Gaps = 49/253 (19%)
Query: 35 EVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWK-DRLVSKLNPFPGMKHLDVAGG 93
+ A+ K+ + + ++ D+ L + + + G LD+ G
Sbjct: 34 QSSADLKTSACKLAAAVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCG 93
Query: 94 TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153
TG + V E ++ D+ N L V +K
Sbjct: 94 TGRDVYLASKLV----------------GEHGKVIGVDMLDNQLEVARKYVEYHAEKFFG 137
Query: 154 LL------WVEGDAEALC------FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGG 201
+++G E L DS++D T+ E +RVL+ GG
Sbjct: 138 SPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGG 197
Query: 202 RFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAM 261
D Y+ + E D Y E + E F +
Sbjct: 198 ELY--------------FSDVYADRRLS---EAAQQDPILY---GECLGGALYLEDFRRL 237
Query: 262 ISDAGFQKVEYEN 274
+++AGF+ V +
Sbjct: 238 VAEAGFRDVRLVS 250
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 4e-26
Identities = 23/178 (12%), Positives = 53/178 (29%), Gaps = 33/178 (18%)
Query: 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDI 132
+ + + +D G G +L+ ++Y DI
Sbjct: 7 EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT-------------------KLYCIDI 47
Query: 133 NPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAE 192
N L K++ V ++ D+++D A ++ + ++E
Sbjct: 48 NVIALKEVKEK----------FDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISE 97
Query: 193 AYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFS-VIPAIGELV---AGDRGSYQYLV 246
R+LK GR + ++ + + L + V + Y + +
Sbjct: 98 VKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFSNFVVEKRFNPTPYHFGL 155
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 99 bits (249), Expect = 1e-25
Identities = 30/237 (12%), Positives = 73/237 (30%), Gaps = 43/237 (18%)
Query: 45 VSNVFSSVAKNYDLMNDLMSGGLHRLWK--DRLVSKLNPFPGMKHLDVAGGTGDVAFRIL 102
+ +F A YD ++ + ++ + L+ GTG++ ++L
Sbjct: 5 FNGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLL 64
Query: 103 DTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162
+Y + + M + K++ + EGD
Sbjct: 65 LAGR-------------------TVYGIEPSREMRMIAKEKLPKE------FSITEGDFL 99
Query: 163 ALCFEDSTMDGYTIAFGIRNVTHIEK--ALAEAYRVLKRGGRFLCLELSHVDIPVFKELY 220
+ S +D + ++T EK A+A+ ++L +GG+ + + D + +
Sbjct: 100 SFEVPTS-IDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTV 158
Query: 221 DYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277
+ + + + + + + GF V + L
Sbjct: 159 EAAKQRGFHQLANDLQTE------------YYTRIPVMQTIFENNGF-HVTFTRLNH 202
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 4e-23
Identities = 42/242 (17%), Positives = 80/242 (33%), Gaps = 44/242 (18%)
Query: 49 FSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSI 108
+ V Y +N + L+ + K LD+A G G +F + D +
Sbjct: 6 YYRVFPTYTDINSQEYRSRIETLEPLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGFEV 63
Query: 109 KRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFED 168
+ DI+ +M+ ++ A R ++ ++ GDA L FED
Sbjct: 64 ----------------VGV---DISEDMIRKAREYAKSRE---SNVEFIVGDARKLSFED 101
Query: 169 STMDGYTIAFGIRNVTHIE--KALAEAYRVLKRGGRFLCLELSHVDIP------------ 214
T D I + +E + E RVLK G+F+ ++
Sbjct: 102 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQK 161
Query: 215 --VFKELYDYYSFSVIPAIGELVAGDRGSYQYL----VESVRRFPPQEKFAAMISDAGFQ 268
+ K + D +V+ R + VE + + ++ + + +
Sbjct: 162 YWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKLYFTKEAEEKVGNYSYL 221
Query: 269 KV 270
V
Sbjct: 222 TV 223
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 2e-22
Identities = 28/206 (13%), Positives = 66/206 (32%), Gaps = 27/206 (13%)
Query: 68 HRLWKDRLVSKL-NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETR 126
+ + LV+ + + +D G G + ++ + E ++
Sbjct: 6 NDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLP----------------EGSK 49
Query: 127 IYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI 186
D +L ++ Y ++EGDA + D D + ++T
Sbjct: 50 YTGIDSGETLLAEARELFRLLPYD---SEFLEGDATEIELNDK-YDIAICHAFLLHMTTP 105
Query: 187 EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLV 246
E L + +K+GG+ +C E + Y + + + ++
Sbjct: 106 ETMLQKMIHSVKKGGKIICFEPHW-----ISNMASYLLDGEKQSEFIQLGVLQKLFESDT 160
Query: 247 ESVRRFP-PQEKFAAMISDAGFQKVE 271
+ + K +S+ G + +E
Sbjct: 161 QRNGKDGNIGMKIPIYLSELGVKNIE 186
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 90.1 bits (223), Expect = 4e-21
Identities = 33/226 (14%), Positives = 63/226 (27%), Gaps = 33/226 (14%)
Query: 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRI 127
H ++ L L P G V G + A V ++
Sbjct: 105 HGHFRRALQRHLRP--GCVVASVPCGWMSELLAL-------DYSACPGV---------QL 146
Query: 128 YVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIE 187
D +P L+ + A + + DA L + D T
Sbjct: 147 VGIDYDPEALDGATRLAAGHALAGQ-ITLHRQDAWKLDTREG-YDLLTSNGLNIYEPDDA 204
Query: 188 KALA---EAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIP---AIGELVAGDRGS 241
+ ++ LK GG + L+ P + ++ P + +LV
Sbjct: 205 RVTELYRRFWQALKPGGALVTSFLTPP--PALSPDSPWDMQAIDPHDLQLQQLVFTRLIQ 262
Query: 242 YQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287
++ + A + +AGF + +E+ + K
Sbjct: 263 PRWN-----ALRTHAQTRAQLEEAGFTDLRFEDDRARLFPTVIARK 303
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 2e-18
Identities = 36/237 (15%), Positives = 72/237 (30%), Gaps = 42/237 (17%)
Query: 39 EEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVA 98
+++ + + ++ ++ + G + L N D+ GTG
Sbjct: 2 SNENKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQT 61
Query: 99 FRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158
+ V ++ D +++ + A + G ++ + +
Sbjct: 62 MVLAGHVTG------------------QVTGLDFLSGFIDIFNRNARQSGLQNR-VTGIV 102
Query: 159 GDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKE 218
G + L F + +D I N+ E+ L E + LK+GG E S E
Sbjct: 103 GSMDDLPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAE 161
Query: 219 LYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275
+ D++ P I + A I AG+ V L
Sbjct: 162 INDFWM-DAYPEIDTI---------------------PNQVAKIHKAGYLPVATFIL 196
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 2e-17
Identities = 41/247 (16%), Positives = 86/247 (34%), Gaps = 55/247 (22%)
Query: 49 FSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSI 108
+ A YD LM + W ++ ++ P G + D+ GTG
Sbjct: 4 YEQFAYVYDE---LMQDVPYPEWVAWVLEQVEP--GKRIADIGCGTGTATLL-------- 50
Query: 109 KRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFED 168
L + + D++ ML + +++A+E + + D L +
Sbjct: 51 ------------LADHYEVTGVDLSEEMLEIAQEKAMETNRH---VDFWVQDMRELELPE 95
Query: 169 STMDGYTIAFG----IRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIP---------- 214
+D TI ++ +++ A R+L GG+ L ++
Sbjct: 96 -PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL-FDVHSPYKMETLFNGKTYA 153
Query: 215 --------VFKELYDYYSFSVIPAIGELVAGDRGSYQYLVES--VRRFPPQEKFAAMISD 264
++ SV+ + + G+ G Y + E+ R +PP++ + + +
Sbjct: 154 THAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQ-YITWLRE 212
Query: 265 AGFQKVE 271
AGF+
Sbjct: 213 AGFRVCA 219
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 4e-17
Identities = 39/253 (15%), Positives = 74/253 (29%), Gaps = 62/253 (24%)
Query: 46 SNVFSSVAKNYDLMNDLMSGGL----H-----------------RLWKDRLVSKLNPFPG 84
+ V + YD D + H D +++ L+ G
Sbjct: 3 APTPEEVRQMYDDFTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSG 62
Query: 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVC--DINPNMLNVGKK 142
+ LDV G G A R+ + V I+ +N
Sbjct: 63 DRVLDVGCGIGKPAVRLA--------------------TARDVRVTGISISRPQVNQANA 102
Query: 143 RALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGR 202
RA G ++ + + DA L FED++ D + ++ +AL E RVL+ GG
Sbjct: 103 RATAAGLANR-VTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGT 161
Query: 203 FLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMI 262
+ + + +F + L +++ + +
Sbjct: 162 VAIADFVLLAPVEGAKKEAVDAFRAGGGVLSL------------------GGIDEYESDV 203
Query: 263 SDAGFQKVEYENL 275
A ++
Sbjct: 204 RQAELVVTSTVDI 216
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 8e-17
Identities = 45/257 (17%), Positives = 76/257 (29%), Gaps = 49/257 (19%)
Query: 17 MLSSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLV 76
M S H H + F+ + ++ + A Y + + + L+
Sbjct: 1 MGSDKIHHHHHHENLYFQGMTNLGTAKNFWD-----ATLYQDKHSF-----VWQYGEDLL 50
Query: 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNM 136
LNP PG LD+ GTG + +I A + D M
Sbjct: 51 QLLNPQPGEFILDLGCGTGQLTEKIAQ------SGA-------------EVLGTDNAATM 91
Query: 137 LNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRV 196
+ ++ YP L + DA + D + V E A+A ++
Sbjct: 92 IEKARQN-----YPH--LHFDVADARNFRVDKPL-DAVFSNAMLHWVKEPEAAIASIHQA 143
Query: 197 LKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQE 256
LK GGRF+ +I E G + + FP
Sbjct: 144 LKSGGRFVAEFGGKGNIKYILEALYN------------ALETLGIHNPQALNPWYFPSIG 191
Query: 257 KFAAMISDAGFQKVEYE 273
++ ++ GF
Sbjct: 192 EYVNILEKQGFDVTYAA 208
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 5e-16
Identities = 37/230 (16%), Positives = 71/230 (30%), Gaps = 52/230 (22%)
Query: 56 YDLMNDLMSGGLHRLW---------KDRLVSKLNPF-PGMKHLDVAGGTGDVAFRILDTV 105
+D + L + VS +N K D+ GTG + D V
Sbjct: 9 HDFDFSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYV 68
Query: 106 NSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165
+I D+ P+ + + + A++ D+ + + G + L
Sbjct: 69 K------------------GQITGIDLFPDFIEIFNENAVKANCADR-VKGITGSMDNLP 109
Query: 166 FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSF 225
F++ +D I N+ E+ + E + LK+GG E S E+ D++
Sbjct: 110 FQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFW-- 166
Query: 226 SVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275
+Y + + AG+ + L
Sbjct: 167 -------------MDAYPEI-------SVIPTCIDKMERAGYTPTAHFIL 196
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 1e-15
Identities = 36/219 (16%), Positives = 66/219 (30%), Gaps = 43/219 (19%)
Query: 63 MSGGLHRLWKDRLVSKLNPF-PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDL 121
M + + R + N LD G I +
Sbjct: 2 MKTIIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIF------------------V 43
Query: 122 QEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIR 181
++ + Y +I+ L + + E + L +GD L F+D +M +
Sbjct: 44 EDGYKTYGIEISDLQLKKAENFSRENNF---KLNISKGDIRKLPFKDESMS---FVYSYG 97
Query: 182 NVTHI-----EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVA 236
+ H+ ++A+ E RVLK GG L+ D E Y+ +L
Sbjct: 98 TIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKD-----ERYNKGEKIGEGEFLQLER 152
Query: 237 GDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275
G+ + + + E+ D E +
Sbjct: 153 GE--------KVIHSYVSLEEADKYFKDMKVLFKEDRVV 183
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 2e-15
Identities = 28/209 (13%), Positives = 53/209 (25%), Gaps = 52/209 (24%)
Query: 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDI 132
L K LD+ G G A ++ I +I
Sbjct: 72 SELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG------------------VSIDCLNI 113
Query: 133 NPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI---EKA 189
P ++ + G D + G + ED++ D + H K
Sbjct: 114 APVQNKRNEEYNNQAGLADN-ITVKYGSFLEIPCEDNSYDF---IWSQDAFLHSPDKLKV 169
Query: 190 LAEAYRVLKRGGRFLCLELSH---VDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLV 246
E RVLK G + +D + + D + ++G
Sbjct: 170 FQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGL------------- 216
Query: 247 ESVRRFPPQEKFAAMISDAGFQKVEYENL 275
+ ++ + G + +
Sbjct: 217 -----------YRSLAKECGLVTLRTFSR 234
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 9e-15
Identities = 28/222 (12%), Positives = 59/222 (26%), Gaps = 40/222 (18%)
Query: 49 FSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSI 108
+ + A YD +RL L++A GTG +
Sbjct: 15 YRARASEYDATFVPYMDSAAPAALERL---RAGNIRGDVLELASGTGYWTRHLSGLA--- 68
Query: 109 KRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFED 168
R+ D + M+ A G + + + + D +
Sbjct: 69 ----------------DRVTALDGSAEMI----AEAGRHGLDN--VEFRQQDLFDWTPDR 106
Query: 169 STMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFS 226
D A + +V E + GG ++++ + + ++ S
Sbjct: 107 Q-WDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQ---DDSEP 162
Query: 227 VIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQ 268
+ L G V+ F + ++ G+
Sbjct: 163 EVAVRRTLQDGRS------FRIVKVFRSPAELTERLTALGWS 198
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 5e-14
Identities = 31/241 (12%), Positives = 71/241 (29%), Gaps = 61/241 (25%)
Query: 49 FSSVAKNYDLMNDLMSGGLHRLW------------KDRLVSKLNPFPGMKHLDVAGGTGD 96
F + D + ++ +++S + K LD+ G G
Sbjct: 13 FLENNQYTDEGVKV----YEFIFGENYISSGGLEATKKILSDIELNENSKVLDIGSGLGG 68
Query: 97 VAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156
I + + DI N++N+ +R + +++
Sbjct: 69 GCMYINEKYG------------------AHTHGIDICSNIVNMANERVSG----NNKIIF 106
Query: 157 VEGDAEALCFEDSTMDG-YTI-AFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIP 214
D F ++ D Y+ A ++ + K + Y+ LK G L + +
Sbjct: 107 EANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKE 166
Query: 215 VFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274
+ + + Y E++A +++ F+ V ++
Sbjct: 167 NWDDEFKEYVKQRKYT---------------------LITVEEYADILTACNFKNVVSKD 205
Query: 275 L 275
L
Sbjct: 206 L 206
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 8e-14
Identities = 40/252 (15%), Positives = 88/252 (34%), Gaps = 50/252 (19%)
Query: 45 VSNVFSSVAKNYDLMNDLMSGGLHR--LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRIL 102
+ +++ +A+ YD + + + + + + + LD+A GTG +
Sbjct: 1 MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLEL- 59
Query: 103 DTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162
+ + D++ ML V +++A ER + +++GD
Sbjct: 60 ------------------AERGYEVVGLDLHEEMLRVARRKAKERN---LKIEFLQGDVL 98
Query: 163 ALCFEDSTMDGYTI---AFGIRNVTHIEKALAEAYRVLKRGGRFL----CLELSHVDIPV 215
+ F++ D T+ + + K ++ LK GG F+ C D PV
Sbjct: 99 EIAFKN-EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPV 157
Query: 216 FKELYDYYSFSVIPAIGELVAGDR--------------GSYQYLVE--SVRRFPPQEKFA 259
VI E+ + G + + + + P+E
Sbjct: 158 VWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGEVKAFLVDDELNIYTPRE--V 215
Query: 260 AMISDAGFQKVE 271
++++ F+KV+
Sbjct: 216 RLLAEKYFEKVK 227
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 69.0 bits (168), Expect = 1e-13
Identities = 22/178 (12%), Positives = 53/178 (29%), Gaps = 20/178 (11%)
Query: 55 NYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQ 114
N+ + M + + + + +K L + GG G++ +IL +Q
Sbjct: 24 NHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQIL--------SKVQ 75
Query: 115 DVLEDDLQEETRIYVCDINPNMLNVGKKR-ALERGYPDKSLLWVEGDAEALC------FE 167
+ + + + K+ A + W + + E
Sbjct: 76 AQYPGVCINNEVV---EPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE 132
Query: 168 DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS--HVDIPVFKELYDYY 223
D + + V I L + +L + L + +S ++K+ +
Sbjct: 133 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRF 190
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 2e-12
Identities = 36/204 (17%), Positives = 64/204 (31%), Gaps = 45/204 (22%)
Query: 61 DLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120
+L + G + RL+ + P G K LD G G + + ++
Sbjct: 25 NLAAAGNDIYGEARLIDAMAP-RGAKILDAGCGQGRIGGYLS-------KQGHD------ 70
Query: 121 LQEETRIYV--CDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIA- 177
V D++P +++ K+ +P+ WV GD ++ D A
Sbjct: 71 --------VLGTDLDPILIDYAKQD-----FPE--ARWVVGDLSVDQISETDFDLIVSAG 115
Query: 178 --FGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELV 235
G E ALA +R L GR + + VF + +
Sbjct: 116 NVMGFLAEDGREPALANIHRALGADGRAV-IGFGAGRGWVFGDFLEVAE----------R 164
Query: 236 AGDRGSYQYLVESVRRFPPQEKFA 259
G + ++ F +F
Sbjct: 165 VGLELENAFESWDLKPFVQGSEFL 188
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 3e-12
Identities = 21/155 (13%), Positives = 41/155 (26%), Gaps = 23/155 (14%)
Query: 51 SVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKR 110
+ Y M G L L F LD+ G G +
Sbjct: 12 HFFEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAE------- 64
Query: 111 RALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDST 170
++ D++ ML K++ + + + E + E
Sbjct: 65 -----------HGAKKVLGIDLSERMLTEAKRKT-----TSPVVCYEQKAIEDIAIEPDA 108
Query: 171 MDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205
+ + + + + + Y LK G F+
Sbjct: 109 YNVVLSSLALHYIASFDDICKKVYINLKSSGSFIF 143
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 7e-12
Identities = 32/238 (13%), Positives = 63/238 (26%), Gaps = 65/238 (27%)
Query: 42 SQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDR-LVSKLNPFPGMKHLDVAGGTGDVAFR 100
+ VS +SS + + L+ + DR L+ LDV GTG
Sbjct: 2 TDDVSKAYSSPTFDAE---ALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGH 58
Query: 101 ILD---TVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157
+ + + + ++ + ++ +P + +
Sbjct: 59 LASLGHQIEGL----------------------EPATRLVELARQT-----HPS--VTFH 89
Query: 158 EGDAEALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIPV 215
G L G + + ++ + AL ++ GG L
Sbjct: 90 HGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLL----------- 138
Query: 216 FKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYE 273
+ + V + R+P E A + AGFQ
Sbjct: 139 ---------------MSFFSGPSLEPMYHPVATAYRWPLPE-LAQALETAGFQVTSSH 180
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 7e-12
Identities = 25/148 (16%), Positives = 43/148 (29%), Gaps = 31/148 (20%)
Query: 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRI 127
H K + G +D G G+ + V E R+
Sbjct: 13 HDYIKMFVK------EGDTVVDATCGNGNDTAFLASLV----------------GENGRV 50
Query: 128 YVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGI------R 181
+ DI + K+ + D+ L +G + D + G
Sbjct: 51 FGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHS 110
Query: 182 NVTHIE---KALAEAYRVLKRGGRFLCL 206
T E +AL++A +L GG +
Sbjct: 111 ISTRPETTIQALSKAMELLVTGGIITVV 138
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 7e-12
Identities = 20/156 (12%), Positives = 47/156 (30%), Gaps = 23/156 (14%)
Query: 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDIN 133
+++ + + +DV G G ++ + ++ I D++
Sbjct: 27 KMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQ----------------IIGSDLS 70
Query: 134 PNMLNVGKKRALERGYPDKSLLWVEGDAEALCF------EDSTMDGYTIAFGIRNVTHIE 187
M+ + K++ + ++ F + +D T + E
Sbjct: 71 ATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECA-HWFDFE 129
Query: 188 KALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYY 223
K AY L++ G + P + E D
Sbjct: 130 KFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLM 165
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 1e-11
Identities = 31/218 (14%), Positives = 62/218 (28%), Gaps = 25/218 (11%)
Query: 53 AKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRA 112
Y + + G L + L G++ +D+ G G + A
Sbjct: 13 FAGYSQLGRSIEGLDGAAEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHE------HGA 66
Query: 113 LQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMD 172
+ + D++ ML + PD + + D + L + D
Sbjct: 67 ------------SYVLGLDLSEKMLARARAAG-----PDTGITYERADLDKLHLPQDSFD 109
Query: 173 GYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKE--LYDYYSFSVIPA 230
+ + V + + ++ L GG F+ + + + D P
Sbjct: 110 LAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPI 169
Query: 231 IGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQ 268
LV G R + V+ + +GF
Sbjct: 170 DRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFA 207
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 2e-11
Identities = 39/203 (19%), Positives = 59/203 (29%), Gaps = 49/203 (24%)
Query: 73 DRLVSKLNPFPG-MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCD 131
DR+ L P + D G +A I + V+ D
Sbjct: 56 DRIARDLRQRPASLVVADFGCGDCRLASSIRNPVHCF----------------------D 93
Query: 132 INPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALA 191
+ V D + ED ++D + T+I L
Sbjct: 94 LASLDPRV-----------------TVCDMAQVPLEDESVDVAVFCLSLMG-TNIRDFLE 135
Query: 192 EAYRVLKRGGRFLCLELS--HVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESV 249
EA RVLK GG E+S D+ F F ++ S+ +L +
Sbjct: 136 EANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKD------LTNSHFFLFDFQ 189
Query: 250 RRFPPQEKFAAMISDAGFQKVEY 272
+ PP A +S Q Y
Sbjct: 190 KTGPPLVGPKAQLSGLQLQPCLY 212
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 5e-11
Identities = 36/256 (14%), Positives = 72/256 (28%), Gaps = 66/256 (25%)
Query: 47 NVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPF--PGMKHLDVAGGTGDVAFRILD- 103
N ++ A YD + + ++ W D ++ K +LD+A GTG++ +
Sbjct: 1 NCYNKFAHIYDKLIR--ADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK 58
Query: 104 --TVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161
++ D++ ML+ + + +G D
Sbjct: 59 FKNTWAV----------------------DLSQEMLSEAENKFRSQGL---KPRLACQDI 93
Query: 162 EALCFEDSTMDGYTIAFG----IRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFK 217
L D T I + ++K LK GG F+ DI +
Sbjct: 94 SNLNINR-KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF------DINSYY 146
Query: 218 ELYDYYSFSVIPAIGELVA--------------------GDRGSYQYLVESV--RRFPPQ 255
+L + + V D Y+ E R + +
Sbjct: 147 KLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEE 206
Query: 256 EKFAAMISDAGFQKVE 271
+ + ++
Sbjct: 207 D-IEKYLKHGQLNILD 221
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 7e-11
Identities = 31/242 (12%), Positives = 62/242 (25%), Gaps = 50/242 (20%)
Query: 46 SNVFSSVAKNYDLMNDLMSGGLHR------------LWKDRLVSKLNPFPGMKHLDVAGG 93
SN + ++YD + + G H + L L P + L+ G
Sbjct: 1 SNAMNHSRESYDRLARELGGYRHPWARVLSGPDPELTFDLWLSRLLTP--QTRVLEAGCG 58
Query: 94 TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153
G A R R D +P +L + + A
Sbjct: 59 HGPDAARFGPQA-------------------ARWAAYDFSPELLKLARANAPHAD----- 94
Query: 154 LLWVEGDAEALCFED-STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVD 212
++ L + G + + + FL + ++
Sbjct: 95 -VYEWNGKGELPAGLGAPFGLIVSRRGPTS------VILRLPELAAPDAHFLYVG-PRLN 146
Query: 213 IPVFKELYDYYSFSVIPAIGELVAG---DRGSYQYLVESVRRFPPQEKFAAMISDAGFQK 269
+P E + ++ V +Q E + + + + A + G
Sbjct: 147 VPEVPERLAAVGWDIVAEDHVSVLAHAPTWEDWQMRGEFMGKLARRADWDAEATVRGMPY 206
Query: 270 VE 271
E
Sbjct: 207 RE 208
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 9e-11
Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 22/165 (13%)
Query: 56 YDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQD 115
Y ++ + + + L N LD G G + R+L +
Sbjct: 52 YGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFR-------- 103
Query: 116 VLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYT 175
+ + DI + L K E G ++ + + E + D
Sbjct: 104 ----------EVDMVDITEDFLVQAKTYLGEEGKRVRN--YFCCGLQDFTPEPDSYDVIW 151
Query: 176 IAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKE 218
I + I ++T H+ + L L+ G + + + + +
Sbjct: 152 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD 196
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 2e-10
Identities = 39/242 (16%), Positives = 69/242 (28%), Gaps = 48/242 (19%)
Query: 53 AKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRA 112
A Y DL+ ++ P G L++A G G + F L
Sbjct: 56 ADTYR---DLIQDADGTSEAREFATRTGPVSG-PVLELAAGMGRLTFPFL-------DLG 104
Query: 113 LQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL-WVEGDAEALCFEDSTM 171
+ +++ ++L +KR E + V+GD A +
Sbjct: 105 W------------EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDK-RF 151
Query: 172 DGYTIAFG-IRNVTH--IEKALAEAYRVLKRGGRFLC----------------LELSHVD 212
I+ G I + A L+ GG+FL EL
Sbjct: 152 GTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRS 211
Query: 213 IPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVE--SVRRFPPQEKFAAMISDAGFQKV 270
+ + I I + D + ++V R P + + +GF +
Sbjct: 212 GRRYVLHVRHLPAEEIQEI-TIHPADETTDPFVVCTHRRRLLAPDQ-VVRELVRSGFDVI 269
Query: 271 EY 272
Sbjct: 270 AQ 271
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 3e-10
Identities = 39/251 (15%), Positives = 70/251 (27%), Gaps = 60/251 (23%)
Query: 49 FSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPF--PGMKHLDVAGGTGDVAFRILD--- 103
+A+ YDL++ HR L + + LDVA GTG + D
Sbjct: 15 SGEIAELYDLVHQGKGKDYHR-EAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFG 73
Query: 104 TVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163
TV + +++ +ML + ++R + + GD
Sbjct: 74 TVEGL----------------------ELSADMLAIARRRNPD-------AVLHHGDMRD 104
Query: 164 LCFEDSTMDGYTIAFG----IRNVTHIEKALAEAYRVLKRGGRFLCLELSHVD-----IP 214
T F + ++ AL + G + +E
Sbjct: 105 FSLGR-RFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVV-VEPWWFPENFTPGY 162
Query: 215 VFKELYDYYSFSVI--------PAIGEL-----VAGDRGSYQYLVESVR-RFPPQEKFAA 260
V + +V + VAG + ES R +E++
Sbjct: 163 VAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYER 222
Query: 261 MISDAGFQKVE 271
+ AG
Sbjct: 223 AFTAAGLSVEF 233
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 3e-09
Identities = 21/176 (11%), Positives = 43/176 (24%), Gaps = 30/176 (17%)
Query: 54 KNYDLMNDLMSGGLHRL------WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNS 107
+ + GG+ + ++ L + LD G G + +L + +
Sbjct: 58 RTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYA 117
Query: 108 IKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFE 167
+ + +ML K+ ++ E
Sbjct: 118 ------------------TTDLLEPVKHMLEEAKRELAGMPVGK----FILASMETATLP 155
Query: 168 DSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYD 221
+T D I + +T K + L G E + D
Sbjct: 156 PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKED 211
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 3e-09
Identities = 26/189 (13%), Positives = 52/189 (27%), Gaps = 40/189 (21%)
Query: 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKK 142
P + L + G +++ + + D + ++ +
Sbjct: 42 PEDRILVLGCGNSALSYELFL------------------GGFPNVTSVDYSSVVVAAMQA 83
Query: 143 RALERGYPDKSLLWVEGDAEALCFEDSTMD---------------GYTIAFGIRNVTHIE 187
L W D L F ++ D V ++
Sbjct: 84 CYAHVP----QLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVD 139
Query: 188 KALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVE 247
+ L+E RVL GGRF+ + + YY +S+ A + YL+
Sbjct: 140 QVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSLRHA---TYGSGFHFHLYLMH 196
Query: 248 SVRRFPPQE 256
+ +
Sbjct: 197 KGGKLSVAQ 205
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 1e-08
Identities = 25/156 (16%), Positives = 47/156 (30%), Gaps = 34/156 (21%)
Query: 52 VAKNYDLMNDLMSGGLHRLWKDRLVSKLN---PFPGMKHLDVAGGTGDVAFRILDTVNSI 108
A+ + G ++ +D +V++L LD+ G G D +
Sbjct: 51 SAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADAL--- 107
Query: 109 KRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFED 168
E + D++ + KR + + + L F D
Sbjct: 108 --------------PEITTFGLDVSKVAIKAAAKR-------YPQVTFCVASSHRLPFSD 146
Query: 169 STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204
++MD + E RV+K GG +
Sbjct: 147 TSMDAIIRIYAPCK-------AEELARVVKPGGWVI 175
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-08
Identities = 33/174 (18%), Positives = 53/174 (30%), Gaps = 35/174 (20%)
Query: 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYV-- 129
L L PG + LD+ G+G++ + I
Sbjct: 25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWA--------------------RDHGITGTG 64
Query: 130 CDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDS----TMDGYTIAFGIRNVTH 185
D++ K+RA E G ++ + ++ DA + G T G
Sbjct: 65 IDMSSLFTAQAKRRAEELGVSER-VHFIHNDAAGYVANEKCDVAACVGATWIAG-----G 118
Query: 186 IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKEL---YDYYSFSVIPAIGELVA 236
A + LK GG L E +P +E+ S S + LV
Sbjct: 119 FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVG 172
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 2e-08
Identities = 37/260 (14%), Positives = 68/260 (26%), Gaps = 42/260 (16%)
Query: 39 EEKSQLVSNVFSSVAKNYDLMNDLMSGG-----------LHRLWKDRLVSKLNPFPGMKH 87
K Q + + ++Y+ + + + K L+ G
Sbjct: 10 FRKDQAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTK-RGDSV 68
Query: 88 LDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147
LD+ G G D + + Y DI +N + RA
Sbjct: 69 LDLGCGKG------GDLLKYERAGI------------GEYYGVDIAEVSINDARVRARNM 110
Query: 148 GYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGI----RNVTHIEKALAEAYRVLKRGGRF 203
K + D + F ++ A R L+ GG F
Sbjct: 111 KRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYF 170
Query: 204 LC-LELSHVDIPVFKELY---DYYSFSVIPAIGELVAGDRGSYQYLVESVRRFP----PQ 255
+ + V + +K+ D+Y + + R L++SV
Sbjct: 171 IMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDF 230
Query: 256 EKFAAMISDAGFQKVEYENL 275
+ G VE +
Sbjct: 231 TRMVDGFKRLGLSLVERKGF 250
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-08
Identities = 25/239 (10%), Positives = 59/239 (24%), Gaps = 44/239 (18%)
Query: 35 EVPAEEKSQLVSNVFSSVAKNYD-LMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGG 93
E + + + A+ + + ++ ++ + + LD+ G
Sbjct: 3 EPIMRNPEDALLDSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCG 62
Query: 94 TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVC-DINPNMLNVGKKRALERGYPDK 152
G + + D R + V D + +++ + +
Sbjct: 63 EGWLLRALAD------RGI--EA------------VGVDGDRTLVDAARAAGAGEVH--- 99
Query: 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH---IEKALAEAYRVLKRGGRFLCLELS 209
+ + + Y + I + L+ +L GG + +
Sbjct: 100 LASYAQLAEAKVPVGKD----YDLIC-ANFALLHQDIIELLSAMRTLLVPGGALVI-QTL 153
Query: 210 HVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQ 268
H P DY G G F + + AG +
Sbjct: 154 H---PWSVADGDYQD-------GWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLR 202
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 3e-08
Identities = 32/169 (18%), Positives = 53/169 (31%), Gaps = 41/169 (24%)
Query: 53 AKNYDL-MNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILD---TVNSI 108
A+ + L + D S +K L+ L + LDVA GTG + +++ +V S+
Sbjct: 28 ARVWQLYIGDTRS--RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSV 85
Query: 109 KRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFED 168
D + ML K R WV +A L +
Sbjct: 86 ----------------------DASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK 123
Query: 169 STMDGYT----IAFG---------IRNVTHIEKALAEAYRVLKRGGRFL 204
G I G + + AL +++ GG +
Sbjct: 124 DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 4e-08
Identities = 36/250 (14%), Positives = 62/250 (24%), Gaps = 66/250 (26%)
Query: 53 AKNYDLMNDLMSGGLHRLWKDRLVSKLNPF--PGMKHLDVAGGTGDVAFRILDTVNSIKR 110
A YDL G + + + LDVA GTG
Sbjct: 9 ADVYDLFYLG-RGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHF--------- 58
Query: 111 RALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDST 170
+E +++ +ML +KR +GD
Sbjct: 59 ----------TKEFGDTAGLELSEDMLTHARKRL-------PDATLHQGDMRDFRLGR-K 100
Query: 171 MDGYTIAFG----IRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFS 226
F ++ + A+A L+ GG + V+ F E + S
Sbjct: 101 FSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVV------VEPWWFPETFADGWVS 154
Query: 227 VIPAIGE-----------------------LVAGDRGSYQYLVE--SVRRFPPQEKFAAM 261
+ VA ++ + + F E + A
Sbjct: 155 ADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAE-YEAA 213
Query: 262 ISDAGFQKVE 271
+ AG +
Sbjct: 214 FTAAGLRVEY 223
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-07
Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 22/130 (16%)
Query: 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINP 134
LVS N P K L +A G G A + + + D +
Sbjct: 21 LVSVANQIPQGKILCLAEGEGRNACFLA-------SLGYE------------VTAVDQSS 61
Query: 135 NMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAY 194
L K+ A E+G + V+ + +G F + ++ + Y
Sbjct: 62 VGLAKAKQLAQEKGV---KITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVY 118
Query: 195 RVLKRGGRFL 204
+ LK GG F+
Sbjct: 119 QGLKPGGVFI 128
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 3e-06
Identities = 18/153 (11%), Positives = 41/153 (26%), Gaps = 40/153 (26%)
Query: 132 INPNMLNVGKKRALERGYPDKSLLWVE---GDAEALCFEDSTMDG-YTI-AFGIRNVTHI 186
++ + G +RA E D V + F+ + + + + +
Sbjct: 148 LSAAQADFGNRRARELRIDDH----VRSRVCNMLDTPFDKGAVTASWNNESTMYVD---L 200
Query: 187 EKALAEAYRVLKRGGRFLCLELSHVDIPV----FKELYDYYSFSVIPAIGELVAGDRGSY 242
+E R LK GGR++ + + + + I + E
Sbjct: 201 HDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRRE--------- 251
Query: 243 QYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275
+ ++D +L
Sbjct: 252 ---------------YLRAMADNRLVPHTIVDL 269
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 3e-06
Identities = 39/239 (16%), Positives = 77/239 (32%), Gaps = 29/239 (12%)
Query: 5 VVTRNLGSRLLPMLSSTSLLHSHATSFGFKEVP-AEEKSQLVSN---VFSSVAKNYDLMN 60
+T G R L+ + H+H S V E+ S + S+ +F +
Sbjct: 14 QLTDAKGRRYTMSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGALFLVLRPLLVDYV 73
Query: 61 DLMSGGLHRLW-KDR--LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVL 117
M G ++ KD +V + + FPG + L+ G+G + +L V
Sbjct: 74 MSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVG----------- 122
Query: 118 EDDLQEETRIYVCDINPNMLNVGKKR-ALERGYPDKSLLWVEGDAEALCFEDSTMDGYTI 176
++ + + ++ + G P + V D D ++D +
Sbjct: 123 -----PAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL 177
Query: 177 AFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELV 235
++ + L R+L GG + + + E P E +
Sbjct: 178 -----DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETL 231
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-05
Identities = 15/123 (12%), Positives = 37/123 (30%), Gaps = 24/123 (19%)
Query: 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKK 142
G + + + GG + +L V R+ V +I P++ + +K
Sbjct: 122 RGERAVFIGGGPLPLTGILLSHVYG-----------------MRVNVVEIEPDIAELSRK 164
Query: 143 RALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGR 202
G ++ + GD + + + + + +R + R
Sbjct: 165 VIEGLGVDGVNV--ITGDETVIDGLE-----FDVLMVAALAEPKRRVFRNIHRYVDTETR 217
Query: 203 FLC 205
+
Sbjct: 218 IIY 220
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 30/218 (13%), Positives = 56/218 (25%), Gaps = 44/218 (20%)
Query: 53 AKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRA 112
A+ Y D L++++ + D+ G G+ + D
Sbjct: 8 AQQYLKFEDE-----RTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYG------ 56
Query: 113 LQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMD 172
I D + +ML R P+ + + D D
Sbjct: 57 -----------VNVITGIDSDDDMLEKAADR-----LPN--TNFGKADLATWKPAQKA-D 97
Query: 173 GYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232
+ V L++ L+ GG ++ P A+
Sbjct: 98 LLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTH------------IAMH 145
Query: 233 ELVAGDRGSYQYLVESVRR--FPPQEKFAAMISDAGFQ 268
E G + +RR PP + +S +
Sbjct: 146 ETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSR 183
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A Length = 176 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 9e-05
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Query: 166 FEDSTMDG-YTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYS 224
++S+ D + H + LAE R+L+ GG E + ++
Sbjct: 59 HKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASK 118
Query: 225 FSVIPAIGELVAGDRGSYQYLVES 248
+ LV + L
Sbjct: 119 LCSALTLSGLVEVKELQREPLTPE 142
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 1e-04
Identities = 21/190 (11%), Positives = 50/190 (26%), Gaps = 30/190 (15%)
Query: 25 HSHATSFGFKEVP-AEEKSQLVS---NVFSSVAKNYDLMNDLMSGGLHRLW-KD--RLVS 77
+ E + F + ++ + D ++
Sbjct: 45 ILVKGKMHHLGISRVIEPGDELIVSGKSFIVSDFSPMYFGRVIRRNTQIISEIDASYIIM 104
Query: 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNML 137
+ PGM L+V G+G+++ IL +N + + V + + + L
Sbjct: 105 RCGLRPGMDILEVGVGSGNMSSYILYALN----------------GKGTLTVVERDEDNL 148
Query: 138 NVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVL 197
L Y ++ D + I ++ + + ++
Sbjct: 149 KKAMDN-LSEFYDIGNVRTSRSDIADFISDQM------YDAVIADIPDPWNHVQKIASMM 201
Query: 198 KRGGRFLCLE 207
K G
Sbjct: 202 KPGSVATFYL 211
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 3e-04
Identities = 28/177 (15%), Positives = 44/177 (24%), Gaps = 29/177 (16%)
Query: 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKK 142
P + +D A G G + R+ D++ + L + K
Sbjct: 56 PELPLIDFACGNGTQTKFLSQFFP-------------------RVIGLDVSKSALEIAAK 96
Query: 143 RALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH------IEKALAEAYRV 196
LL +A D R H E +
Sbjct: 97 ENTAANI-SYRLLDGLVPEQAAQIHSEIGDANIYM---RTGFHHIPVEKRELLGQSLRIL 152
Query: 197 LKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFP 253
L + G +EL I F L + Y + + G R + FP
Sbjct: 153 LGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYFP 209
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 4e-04
Identities = 24/148 (16%), Positives = 43/148 (29%), Gaps = 35/148 (23%)
Query: 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRI 127
H + L +D G G+ DT L ++
Sbjct: 13 HDFLAEVLD------DESIVVDATMGNGN------DTA------FL-------AGLSKKV 47
Query: 128 YVCDINPNMLNVGKKRALERGYPDKSLL---------WVEGDAEALCFEDSTMDGYTIAF 178
Y D+ L +R + G + L+ +V A F + +
Sbjct: 48 YAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSV 107
Query: 179 GIRNVTHIEKALAEAYRVLKRGGRFLCL 206
+ T +E A+ + L+ GGR +
Sbjct: 108 ITKPHTTLE-AIEKILDRLEVGGRLAIM 134
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 4e-04
Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 10/86 (11%)
Query: 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGY--TIAFGIRNV 183
+Y D++ L + ++ AL G L DA L +D G+R
Sbjct: 230 PVYAGDLDEKRLGLAREAALASGLSWIRFLR--ADARHLPRFFPEVDRILANPPHGLRLG 287
Query: 184 THIE------KALAEAYRVLKRGGRF 203
L A +L GGR
Sbjct: 288 RKEGLFHLYWDFLRGALALLPPGGRV 313
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 7e-04
Identities = 21/135 (15%), Positives = 34/135 (25%), Gaps = 28/135 (20%)
Query: 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVC--D 131
++ + K LD+ G G + + V D
Sbjct: 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLA-------ANGYD--------------VDAWD 61
Query: 132 INPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGY--TIAFGIRNVTHIEKA 189
N + ++ +L D L F+ D T+ I
Sbjct: 62 KNAMSIANVERIKSIENLD--NLHTRVVDLNNLTFDRQ-YDFILSTVVLMFLEAKTIPGL 118
Query: 190 LAEAYRVLKRGGRFL 204
+A R K GG L
Sbjct: 119 IANMQRCTKPGGYNL 133
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336 | Back alignment and structure |
|---|
Score = 39.4 bits (91), Expect = 8e-04
Identities = 20/138 (14%), Positives = 43/138 (31%), Gaps = 24/138 (17%)
Query: 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINP 134
++S ++ PG L+ G+G ++ + V + R+ ++
Sbjct: 97 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVG----------------SQGRVISFEVRK 140
Query: 135 NMLNVGKKRALERGYPDKSLLWVEGDAE-------ALCFEDSTMDGYTIAFGIRNVTHIE 187
+ ++ KK + L VE + + + T ++ +
Sbjct: 141 DHHDLAKKN-YKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPH 199
Query: 188 KALAEAYRVLKRGGRFLC 205
L Y LK GG
Sbjct: 200 VTLPVFYPHLKHGGVCAV 217
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 288 | |||
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.92 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.91 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.89 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.88 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.88 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.88 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.87 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.87 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.87 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.87 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.86 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.86 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.86 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.86 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.85 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.85 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.85 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.85 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.84 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.84 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.84 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.84 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.84 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.84 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.83 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.83 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.83 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.83 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.83 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.82 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.82 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.82 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.82 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.82 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.82 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.82 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.82 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.81 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.81 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.81 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.81 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.81 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.8 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.8 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.8 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.8 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.8 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.8 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.79 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.79 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.79 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.79 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.79 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.78 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.78 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.78 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.78 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.78 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.78 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.78 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.77 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.77 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.76 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.76 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.76 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.76 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.76 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.75 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.75 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.75 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.75 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.75 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.75 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.74 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.74 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.74 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.74 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.73 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.73 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.73 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.73 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.73 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.73 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.72 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.72 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.72 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.72 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.71 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.71 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.71 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.7 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.7 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.7 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.69 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.69 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.69 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.69 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.68 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.68 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.68 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.68 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.68 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.67 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.67 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.67 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.66 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.66 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.66 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.66 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.66 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.65 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.65 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.65 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.65 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.64 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.64 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.64 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.64 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.64 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.64 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.63 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.63 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.62 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.62 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.62 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.62 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.61 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.61 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.61 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.61 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.61 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.6 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.6 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.59 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.59 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.59 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.59 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.58 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.58 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.57 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.57 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.57 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.57 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.56 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.56 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.56 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.56 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.56 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.55 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.55 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.54 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.54 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.54 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.54 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.54 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.54 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.53 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.53 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.53 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.53 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.53 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.53 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.52 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.52 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.52 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.52 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.52 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.52 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.51 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.51 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.51 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.5 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.5 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.49 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.49 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.49 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.49 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.49 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.48 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.48 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.47 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.47 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.47 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.47 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.46 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.46 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.46 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.46 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.45 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.45 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.45 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.43 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.42 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.42 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.42 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.42 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.41 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.41 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.41 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.41 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.41 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.4 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.4 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.39 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.39 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.39 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.38 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.38 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.38 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.38 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.38 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.38 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.38 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.37 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.36 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.36 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.35 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.34 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.33 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.33 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.33 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.33 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.32 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.3 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.3 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.29 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.29 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.29 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.29 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.28 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.27 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.26 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.26 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.25 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.25 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.25 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.25 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.24 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.24 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.24 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.21 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.21 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.21 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.19 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.18 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.14 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.13 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.1 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.09 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.08 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.08 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.06 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.05 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.05 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.04 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.04 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.97 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.97 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.97 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.96 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.93 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.92 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.92 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.91 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.85 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.85 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.84 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.84 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.83 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.81 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.79 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.79 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.75 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.75 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.75 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.72 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.71 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.66 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.61 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.58 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.58 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.54 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.54 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.51 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.43 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.4 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.34 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.34 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.24 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.16 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.16 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.08 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.07 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.93 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.84 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.81 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.74 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.7 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.63 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.59 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.44 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.3 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.11 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.75 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 96.67 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 96.66 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.58 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.26 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.07 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.95 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.35 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.35 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.32 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.14 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.97 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 94.97 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.97 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.91 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.87 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.78 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 94.78 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.64 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.53 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 94.36 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.23 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.19 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.18 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.17 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.08 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.04 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.94 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.9 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.89 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 93.64 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 93.63 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.62 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.56 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.55 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.53 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.41 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 93.2 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 93.18 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.12 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 93.11 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.09 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.07 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 93.0 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 92.94 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 92.89 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 92.69 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 92.68 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 92.49 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 92.34 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 92.29 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 92.2 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 92.0 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 91.98 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 91.95 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 91.79 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 91.67 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 91.44 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 91.43 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 91.43 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 91.35 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 91.31 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.23 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 91.22 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 91.04 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 90.97 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 90.73 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 90.25 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 90.18 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 89.94 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 89.89 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 89.77 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 89.69 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 89.68 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 89.63 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 89.59 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 89.3 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 88.94 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 88.84 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 88.63 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 88.34 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 87.95 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 87.1 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 86.99 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 86.07 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 86.06 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 86.01 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 85.98 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 85.64 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 85.57 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 85.03 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 84.6 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 84.57 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 84.14 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 84.01 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 83.83 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 83.11 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 83.11 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 83.05 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 82.88 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 82.66 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 82.61 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 82.16 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 81.91 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 81.7 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 81.16 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 81.09 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 80.94 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 80.54 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 80.21 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 80.08 |
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=182.51 Aligned_cols=188 Identities=18% Similarity=0.209 Sum_probs=136.0
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
.+++.+|||+|||+|..+..+++.... ++.+|+|+|+|+.|++.|++++...+.. .+++++++|
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~---------------~~~~v~gvD~s~~ml~~A~~~~~~~~~~-~~v~~~~~D 131 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHH---------------DNCKIIAIDNSPAMIERCRRHIDAYKAP-TPVDVIEGD 131 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCS---------------SSCEEEEEESCHHHHHHHHHHHHTSCCS-SCEEEEESC
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCC---------------CCCEEEEEECCHHHHHHHHHHHHhhccC-ceEEEeecc
Confidence 356889999999999999999987531 4679999999999999999998877665 689999999
Q ss_pred cccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCC
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGD 238 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (288)
+.+++++ .||+|+++.+++++++. ..+|++++++|||||.|++.+...+...........+........| .....
T Consensus 132 ~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~e 208 (261)
T 4gek_A 132 IRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANG-YSELE 208 (261)
T ss_dssp TTTCCCC--SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTT-GGGST
T ss_pred ccccccc--ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcC-CCHHH
Confidence 9988764 59999999999998744 5689999999999999999988877665544332221111111011 00000
Q ss_pred CcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeeeC
Q 036563 239 RGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288 (288)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k~ 288 (288)
........+.+....+.+++.++|+++||+.+++..-. ..++.++|+|+
T Consensus 209 i~~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~~fq~-~nF~~~iA~K~ 257 (261)
T 4gek_A 209 ISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQC-FNFGSLVALKA 257 (261)
T ss_dssp THHHHHHHHHHCCCBCHHHHHHHHHHHTCSEEEEEEEE-TTEEEEEEECC
T ss_pred HHHHHhhhcccccCCCHHHHHHHHHHcCCCeEEEEEEe-ccEEEEEEEEc
Confidence 01111222334445688999999999999999875433 33456778875
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=178.99 Aligned_cols=215 Identities=19% Similarity=0.253 Sum_probs=152.2
Q ss_pred HHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcC-CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCC
Q 036563 46 SNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLN-PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEE 124 (288)
Q Consensus 46 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (288)
.++|+..+..|+.............+ +.+...+. ..++.+|||+|||+|.++..+++.. +.
T Consensus 7 ~~~f~~~a~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-----------------~~ 68 (234)
T 3dtn_A 7 KRKFDAVSGKYDEQRRKFIPCFDDFY-GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKY-----------------PE 68 (234)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTHHHHH-HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHC-----------------TT
T ss_pred HHHHHHHHHHHHHhHHHhCcCHHHHH-HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhC-----------------CC
Confidence 45677777888766554443333333 45555555 4567899999999999999999986 45
Q ss_pred ceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHH--HHHHHHHhhccCCcE
Q 036563 125 TRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIE--KALAEAYRVLKRGGR 202 (288)
Q Consensus 125 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~ 202 (288)
.+++++|+++.+++.++++.... +++.+..+|+.+++++ ++||+|++..+++++++.. .+++++.++|+|||.
T Consensus 69 ~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 143 (234)
T 3dtn_A 69 ATFTLVDMSEKMLEIAKNRFRGN----LKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGI 143 (234)
T ss_dssp CEEEEEESCHHHHHHHHHHTCSC----TTEEEEESCTTTCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred CeEEEEECCHHHHHHHHHhhccC----CCEEEEeCchhccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcE
Confidence 89999999999999999987654 3799999999988776 7899999999999998665 599999999999999
Q ss_pred EEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchh--hhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCee
Q 036563 203 FLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQ--YLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVV 280 (288)
Q Consensus 203 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~ 280 (288)
+++.+...+....................+. ...... +......+.++.+++.++|+++||+++++.....+ +
T Consensus 144 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~-~ 218 (234)
T 3dtn_A 144 FINADLVHGETAFIENLNKTIWRQYVENSGL----TEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQ-F 218 (234)
T ss_dssp EEEEEECBCSSHHHHHHHHHHHHHHHHTSSC----CHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEEEEETT-E
T ss_pred EEEEEecCCCChhhhhHHHHHHHHHHHhcCC----CHHHHHHHHHhcccccccCHHHHHHHHHHcCCCceeeeeeecc-e
Confidence 9999887776554433322211111100000 000000 00012234668999999999999999999766555 5
Q ss_pred EEEEeeeC
Q 036563 281 AIHSGLKI 288 (288)
Q Consensus 281 ~~~~~~k~ 288 (288)
+++.+.|+
T Consensus 219 ~~~~~~~~ 226 (234)
T 3dtn_A 219 AVMFGRKT 226 (234)
T ss_dssp EEEEEECC
T ss_pred eEEEEEec
Confidence 56666653
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-22 Score=165.79 Aligned_cols=179 Identities=15% Similarity=0.188 Sum_probs=135.7
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
...+.+.+.+.+...++ +|||+|||+|.++..+++.. ..+++++|+++.+++.++++....
T Consensus 29 ~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~------------------~~~v~~~D~s~~~~~~a~~~~~~~ 89 (219)
T 3dlc_A 29 YPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQS------------------DFSIRALDFSKHMNEIALKNIADA 89 (219)
T ss_dssp HHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHS------------------EEEEEEEESCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcC------------------CCeEEEEECCHHHHHHHHHHHHhc
Confidence 44555667777776666 99999999999999998872 479999999999999999999887
Q ss_pred CCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccc
Q 036563 148 GYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSV 227 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 227 (288)
++. +++.+..+|+.++++++++||+|++..+++|++++..+++++.++|+|||.+++.+..... .............
T Consensus 90 ~~~-~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~-~~~~~~~~~~~~~- 166 (219)
T 3dlc_A 90 NLN-DRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNK-ELRDSISAEMIRK- 166 (219)
T ss_dssp TCT-TTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSH-HHHHHHHHHHHHH-
T ss_pred ccc-CceEEEEcCHHHCCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcH-HHHHHHHHHHHHh-
Confidence 765 6899999999998888889999999999999999999999999999999999987654432 2222221111100
Q ss_pred cccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCe
Q 036563 228 IPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGV 279 (288)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~ 279 (288)
. ..+.........+++.+++.++|+++||+++++.....+.
T Consensus 167 ~-----------~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~ 207 (219)
T 3dlc_A 167 N-----------PDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEGF 207 (219)
T ss_dssp C-----------TTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEEEETTEE
T ss_pred H-----------HHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEEecCCce
Confidence 0 0011111111123377999999999999999988766554
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.88 E-value=6e-22 Score=166.81 Aligned_cols=201 Identities=15% Similarity=0.221 Sum_probs=130.2
Q ss_pred HHHHHHhHhhHHHhhhhhhhhhhh---hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccc
Q 036563 44 LVSNVFSSVAKNYDLMNDLMSGGL---HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120 (288)
Q Consensus 44 ~~~~~~~~~~~~y~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~ 120 (288)
.+.++|+..+..|+.......... ...+ ..+++.+...++.+|||+|||+|.++..+++..
T Consensus 4 ~~~~~f~~~a~~y~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--------------- 67 (220)
T 3hnr_A 4 EFNGLFDEWAHTYDSFVQGEDIQYKEVFAHY-EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG--------------- 67 (220)
T ss_dssp --------------------CCTTTTTTTTH-HHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTT---------------
T ss_pred hHHHHHHHHHHHHHHHhhcchHhHHHHHHHH-HHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCC---------------
Confidence 456788888888986543221111 1112 234444544577899999999999999998863
Q ss_pred cCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHH--HHHHHHhhcc
Q 036563 121 LQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEK--ALAEAYRVLK 198 (288)
Q Consensus 121 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~--~l~~~~~~L~ 198 (288)
.+++++|+++.+++.++++.. .++.+..+|+.+++++ ++||+|++..+++++++... +|+++.++|+
T Consensus 68 ----~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk 136 (220)
T 3hnr_A 68 ----RTVYGIEPSREMRMIAKEKLP------KEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLN 136 (220)
T ss_dssp ----CEEEEECSCHHHHHHHHHHSC------TTCCEESCCSSSCCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSC
T ss_pred ----CeEEEEeCCHHHHHHHHHhCC------CceEEEeCChhhcCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcC
Confidence 799999999999999988764 2789999999988877 89999999999999998876 9999999999
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHH--hcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 199 RGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESV--RRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 199 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
|||.+++.+.................. ..+....... ..+++.+++.++|+++||+++.....
T Consensus 137 pgG~l~i~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~- 201 (220)
T 3hnr_A 137 KGGKIVFADTIFADQDAYDKTVEAAKQ--------------RGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLN- 201 (220)
T ss_dssp TTCEEEEEEECBSSHHHHHHHHHHHHH--------------TTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEECS-
T ss_pred CCCEEEEEeccccChHHHHHHHHHHHh--------------CCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeecc-
Confidence 999999988666554444333332210 0111111111 23568999999999999987776543
Q ss_pred CCeeEEEEeee
Q 036563 277 GGVVAIHSGLK 287 (288)
Q Consensus 277 ~~~~~~~~~~k 287 (288)
+...+..+.|
T Consensus 202 -~~~w~~~~~~ 211 (220)
T 3hnr_A 202 -HFVWVMEATK 211 (220)
T ss_dssp -SSEEEEEEEE
T ss_pred -ceEEEEeehh
Confidence 4444555444
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=168.45 Aligned_cols=196 Identities=19% Similarity=0.262 Sum_probs=136.7
Q ss_pred hHHHHHHHhHhhHHHhhhhh-hhh-------------hhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhh
Q 036563 42 SQLVSNVFSSVAKNYDLMND-LMS-------------GGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNS 107 (288)
Q Consensus 42 ~~~~~~~~~~~~~~y~~~~~-~~~-------------~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~ 107 (288)
.+.+..+|+..+..|+.... .++ ....+...+.+.+.+...++.+|||+|||+|.++..+++..
T Consensus 6 ~~~~~~~Yd~~~~~y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-- 83 (273)
T 3bus_A 6 PEEVRQMYDDFTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-- 83 (273)
T ss_dssp -----------------CCGGGCCCCCCCCSSCCCCHHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--
T ss_pred HHHHHHHHcchHHHHHHHcCCCceEEecCCCccccCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--
Confidence 34566677776666653211 111 11223445677788887888999999999999999998875
Q ss_pred hhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHH
Q 036563 108 IKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIE 187 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~ 187 (288)
+.+++++|+|+.+++.++++....++. +++.+..+|+..+++++++||+|++..+++|+++..
T Consensus 84 ----------------~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 146 (273)
T 3bus_A 84 ----------------DVRVTGISISRPQVNQANARATAAGLA-NRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRG 146 (273)
T ss_dssp ----------------CCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHH
T ss_pred ----------------CCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEECccccCCCCCCCccEEEEechhhhCCCHH
Confidence 389999999999999999998887765 689999999998888888999999999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEeccCCCh--HHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHc
Q 036563 188 KALAEAYRVLKRGGRFLCLELSHVDI--PVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDA 265 (288)
Q Consensus 188 ~~l~~~~~~L~pgG~l~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 265 (288)
.+++++.++|+|||.+++.+...... .........+. .. .....+++.+++.++|+++
T Consensus 147 ~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~----~~----------------~~~~~~~~~~~~~~~l~~a 206 (273)
T 3bus_A 147 RALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFR----AG----------------GGVLSLGGIDEYESDVRQA 206 (273)
T ss_dssp HHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHH----HH----------------HTCCCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHH----hh----------------cCccCCCCHHHHHHHHHHc
Confidence 99999999999999999887654321 11111111110 00 0012356889999999999
Q ss_pred CCcEEEEEEee
Q 036563 266 GFQKVEYENLV 276 (288)
Q Consensus 266 Gf~~v~~~~~~ 276 (288)
||+++++..+.
T Consensus 207 Gf~~~~~~~~~ 217 (273)
T 3bus_A 207 ELVVTSTVDIS 217 (273)
T ss_dssp TCEEEEEEECH
T ss_pred CCeEEEEEECc
Confidence 99999887764
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-21 Score=166.28 Aligned_cols=165 Identities=26% Similarity=0.364 Sum_probs=131.7
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+++.+...++.+|||+|||+|.++..+++.. .+++++|+|+.|++.++++....++ +
T Consensus 27 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-------------------~~v~gvD~s~~~l~~a~~~~~~~~~--~ 85 (260)
T 1vl5_A 27 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFV-------------------KKVVAFDLTEDILKVARAFIEGNGH--Q 85 (260)
T ss_dssp HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS-------------------SEEEEEESCHHHHHHHHHHHHHTTC--C
T ss_pred HHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC-------------------CEEEEEeCCHHHHHHHHHHHHhcCC--C
Confidence 345666777788899999999999999888764 5999999999999999999877765 3
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
++.+..+|+..+++++++||+|++..+++|++++..+|+++.++|+|||.+++.+...+..+........... ..
T Consensus 86 ~v~~~~~d~~~l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-----~~ 160 (260)
T 1vl5_A 86 QVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEK-----ER 160 (260)
T ss_dssp SEEEEECCC-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHH-----HH
T ss_pred ceEEEEecHHhCCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHH-----hc
Confidence 7999999999988888899999999999999999999999999999999999987776665544443332210 00
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
. . ...++++.+++.++|+++||+++.+....
T Consensus 161 ---~--~--------~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 191 (260)
T 1vl5_A 161 ---D--Y--------SHHRAWKKSDWLKMLEEAGFELEELHCFH 191 (260)
T ss_dssp ---C--T--------TCCCCCBHHHHHHHHHHHTCEEEEEEEEE
T ss_pred ---C--c--------cccCCCCHHHHHHHHHHCCCeEEEEEEee
Confidence 0 0 00124588999999999999998887653
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.87 E-value=8.4e-21 Score=167.21 Aligned_cols=164 Identities=16% Similarity=0.130 Sum_probs=132.9
Q ss_pred HHHHHHHhhc----CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh
Q 036563 70 LWKDRLVSKL----NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL 145 (288)
Q Consensus 70 ~~~~~~~~~l----~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 145 (288)
...+.+...+ ...++.+|||+|||+|.++..+++..+ .+++++|+++.+++.++++..
T Consensus 65 ~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~------------------~~v~gvD~s~~~~~~a~~~~~ 126 (297)
T 2o57_A 65 RTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG------------------VSIDCLNIAPVQNKRNEEYNN 126 (297)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC------------------CEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC------------------CEEEEEeCCHHHHHHHHHHHH
Confidence 3345667777 667888999999999999999998863 699999999999999999988
Q ss_pred hcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCCh---HHHHHHHHH
Q 036563 146 ERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDI---PVFKELYDY 222 (288)
Q Consensus 146 ~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~---~~~~~~~~~ 222 (288)
..++. +++.+..+|+..+++++++||+|++..+++|++++..+|+++.++|+|||.+++.+...... .....+...
T Consensus 127 ~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 205 (297)
T 2o57_A 127 QAGLA-DNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDR 205 (297)
T ss_dssp HHTCT-TTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHH
T ss_pred hcCCC-cceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHH
Confidence 77765 68999999999988888899999999999999999999999999999999999987654321 111111111
Q ss_pred hhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 223 YSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
+. ...+.+.+++.++|+++||++++...+.
T Consensus 206 ~~------------------------~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 206 IK------------------------LHDMGSLGLYRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp HT------------------------CSSCCCHHHHHHHHHHTTEEEEEEEECH
T ss_pred hc------------------------CCCCCCHHHHHHHHHHCCCeEEEEEECc
Confidence 10 0124588999999999999999987654
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-21 Score=161.86 Aligned_cols=166 Identities=17% Similarity=0.230 Sum_probs=136.4
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.++..+...++.+|||+|||+|.++..+++..+ +..+++++|+++.+++.++++....+++
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~----------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~-- 88 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVG----------------EKGKVYAIDVQEEMVNYAWEKVNKLGLK-- 88 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHT----------------TTCEEEEEESCHHHHHHHHHHHHHHTCT--
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhC----------------CCcEEEEEECCHHHHHHHHHHHHHcCCC--
Confidence 4466677777888999999999999999999863 4579999999999999999998887764
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
++.+..+|+..+++++++||+|++..++++++++..+++++.++|+|||.+++.++.......
T Consensus 89 ~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----------------- 151 (219)
T 3dh0_A 89 NVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDK----------------- 151 (219)
T ss_dssp TEEEEECBTTBCSSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSS-----------------
T ss_pred cEEEEecccccCCCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccccccc-----------------
Confidence 799999999988888889999999999999999999999999999999999998766543200
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
.. ...++++.+++.++++++||++++........+.+. ++|
T Consensus 152 ----~~---------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~-~~k 192 (219)
T 3dh0_A 152 ----GP---------PPEEVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVY-AMI 192 (219)
T ss_dssp ----SC---------CGGGSCCHHHHHHHHHHTTCEEEEEEEETTTEEEEE-EEC
T ss_pred ----CC---------chhcccCHHHHHHHHHHCCCEEEEEEeeCCceEEEE-EEe
Confidence 00 011245889999999999999999988766554443 344
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-21 Score=165.06 Aligned_cols=184 Identities=18% Similarity=0.181 Sum_probs=137.0
Q ss_pred HhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcC-CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceE
Q 036563 49 FSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLN-PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRI 127 (288)
Q Consensus 49 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v 127 (288)
++.....|+...+... ........++..+. ..++.+|||||||+|.++..+++.. ..++
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~------------------~~~v 72 (267)
T 3kkz_A 13 LNLICDFFSNMERQGP--GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHV------------------TGQV 72 (267)
T ss_dssp HHHHHHHHHTSSCSSS--CCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTC------------------SSEE
T ss_pred HHHHHHHHhhccccCC--CCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhcc------------------CCEE
Confidence 3445555654433221 11222334555555 5678899999999999999998873 4799
Q ss_pred EEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 128 YVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 128 ~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+++|+++.+++.++++....+++ +++.+..+|+.++++++++||+|++..+++++ ++..+++++.++|+|||.+++.+
T Consensus 73 ~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 73 TGLDFLSGFIDIFNRNARQSGLQ-NRVTGIVGSMDDLPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSE 150 (267)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHcCCC-cCcEEEEcChhhCCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEE
Confidence 99999999999999999888776 67999999999988888899999999999999 89999999999999999999887
Q ss_pred ccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 208 LSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
...............+. +....+.+.+++.++|+++||++++...+.
T Consensus 151 ~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 151 CSWFTDERPAEINDFWM----------------------DAYPEIDTIPNQVAKIHKAGYLPVATFILP 197 (267)
T ss_dssp EEESSSCCCHHHHHHHH----------------------HHCTTCEEHHHHHHHHHHTTEEEEEEEECC
T ss_pred eeecCCCChHHHHHHHH----------------------HhCCCCCCHHHHHHHHHHCCCEEEEEEECC
Confidence 64321111111111110 011124578999999999999999987764
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=157.40 Aligned_cols=200 Identities=14% Similarity=0.109 Sum_probs=137.8
Q ss_pred HhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcC-CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhccccc
Q 036563 41 KSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLN-PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLED 119 (288)
Q Consensus 41 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~ 119 (288)
..+...++|+..+..|+........ .....+...+. ..++.+|||+|||+|.++..+++..
T Consensus 7 ~~~~~~~~~~~~a~~y~~~~~~~~~----~~~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~-------------- 68 (218)
T 3ou2_A 7 LIESQLSYYRARASEYDATFVPYMD----SAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLA-------------- 68 (218)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHHHHT----TTHHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHS--------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcC--------------
Confidence 3456678999999988863221111 11233444443 4566799999999999999998873
Q ss_pred ccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhc
Q 036563 120 DLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVL 197 (288)
Q Consensus 120 ~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L 197 (288)
.+++++|+++.+++.+++ .+. +++.+..+|+.++ +++++||+|++..+++|+++. ..+|+++.++|
T Consensus 69 -----~~v~~~D~s~~~~~~a~~----~~~--~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L 136 (218)
T 3ou2_A 69 -----DRVTALDGSAEMIAEAGR----HGL--DNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAV 136 (218)
T ss_dssp -----SEEEEEESCHHHHHHHGG----GCC--TTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHE
T ss_pred -----CeEEEEeCCHHHHHHHHh----cCC--CCeEEEecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHc
Confidence 799999999999999987 222 4799999999887 677899999999999999875 88999999999
Q ss_pred cCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC
Q 036563 198 KRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277 (288)
Q Consensus 198 ~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 277 (288)
+|||.+++.+...+.......... ...+........ ...|. ...++++.+++.++|+++||++........
T Consensus 137 ~pgG~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~ 207 (218)
T 3ou2_A 137 APGGVVEFVDVTDHERRLEQQDDS----EPEVAVRRTLQD-GRSFR----IVKVFRSPAELTERLTALGWSCSVDEVHPG 207 (218)
T ss_dssp EEEEEEEEEEECCCC----------------CEEEEECTT-SCEEE----EECCCCCHHHHHHHHHHTTEEEEEEEEETT
T ss_pred CCCeEEEEEeCCCCccccchhhhc----ccccceeeecCC-cchhh----HhhcCCCHHHHHHHHHHCCCEEEeeecccc
Confidence 999999998887754332221111 111222222221 11111 123467999999999999999655554433
Q ss_pred Ce
Q 036563 278 GV 279 (288)
Q Consensus 278 ~~ 279 (288)
..
T Consensus 208 ~~ 209 (218)
T 3ou2_A 208 FL 209 (218)
T ss_dssp EE
T ss_pred ce
Confidence 33
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=161.00 Aligned_cols=165 Identities=24% Similarity=0.330 Sum_probs=133.4
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..++..+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....+++
T Consensus 11 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-------------------~~v~~vD~s~~~~~~a~~~~~~~~~~-- 69 (239)
T 1xxl_A 11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV-------------------QECIGVDATKEMVEVASSFAQEKGVE-- 69 (239)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-------------------SEEEEEESCHHHHHHHHHHHHHHTCC--
T ss_pred chHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC-------------------CEEEEEECCHHHHHHHHHHHHHcCCC--
Confidence 446677778889999999999999999888764 69999999999999999998777663
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
++.+..+|+..+++++++||+|++..+++|++++..+++++.++|+|||.+++.+...+..............
T Consensus 70 ~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~------- 142 (239)
T 1xxl_A 70 NVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNR------- 142 (239)
T ss_dssp SEEEEECBTTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHH-------
T ss_pred CeEEEecccccCCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHH-------
Confidence 7999999999988888899999999999999999999999999999999999988877665544443332210
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
.... ...+.++.+++.++|+++||+++......
T Consensus 143 -~~~~----------~~~~~~~~~~~~~ll~~aGf~~~~~~~~~ 175 (239)
T 1xxl_A 143 -LRDP----------SHVRESSLSEWQAMFSANQLAYQDIQKWN 175 (239)
T ss_dssp -HHCT----------TCCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred -hccc----------cccCCCCHHHHHHHHHHCCCcEEEEEeec
Confidence 0000 00124588999999999999998887653
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.4e-21 Score=162.30 Aligned_cols=190 Identities=20% Similarity=0.216 Sum_probs=125.8
Q ss_pred HHhHHHHHHHhHhhHHHhhhhhh-hhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccc
Q 036563 40 EKSQLVSNVFSSVAKNYDLMNDL-MSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLE 118 (288)
Q Consensus 40 ~~~~~~~~~~~~~~~~y~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~ 118 (288)
...+...++|+..+..|+..... ........+.+.+...++ ++.+|||+|||+|.++..+++..
T Consensus 11 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~------------- 75 (242)
T 3l8d_A 11 NWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTG------------- 75 (242)
T ss_dssp ---------------------CHHHHTSTTTTHHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTT-------------
T ss_pred chHHHHHHHHHhHHHHhhhhhhhccCcccHHHHHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcC-------------
Confidence 34456778888888888754322 122222334445555554 57799999999999999998873
Q ss_pred cccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhcc
Q 036563 119 DDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLK 198 (288)
Q Consensus 119 ~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~ 198 (288)
.+++++|+++.+++.++++... .++.++.+|+.++++++++||+|++..+++|++++..+++++.++|+
T Consensus 76 ------~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~ 144 (242)
T 3l8d_A 76 ------YKAVGVDISEVMIQKGKERGEG-----PDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLK 144 (242)
T ss_dssp ------CEEEEEESCHHHHHHHHTTTCB-----TTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEE
T ss_pred ------CeEEEEECCHHHHHHHHhhccc-----CCceEEEcchhcCCCCCCCccEEEEcChHhhccCHHHHHHHHHHHhC
Confidence 7999999999999999877422 58999999999988888899999999999999999999999999999
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 199 RGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 199 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
|||.+++.+............ ....... ...+.++.+++.++++++||++++...+.
T Consensus 145 pgG~l~i~~~~~~~~~~~~~~------------~~~~~~~---------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 201 (242)
T 3l8d_A 145 SDGYACIAILGPTAKPRENSY------------PRLYGKD---------VVCNTMMPWEFEQLVKEQGFKVVDGIGVY 201 (242)
T ss_dssp EEEEEEEEEECTTCGGGGGGG------------GGGGTCC---------CSSCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCeEEEEEEcCCcchhhhhhh------------hhhcccc---------ccccCCCHHHHHHHHHHcCCEEEEeeccc
Confidence 999999887655432211110 0000000 01224688999999999999999987553
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=161.50 Aligned_cols=162 Identities=20% Similarity=0.242 Sum_probs=127.8
Q ss_pred HHHHhhc-CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 73 DRLVSKL-NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 73 ~~~~~~l-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
..++..+ ...++.+|||+|||+|..+..+++..+ .+++++|+++.+++.++++....++.
T Consensus 35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~------------------~~v~~vD~s~~~~~~a~~~~~~~~~~- 95 (257)
T 3f4k_A 35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK------------------GQITGIDLFPDFIEIFNENAVKANCA- 95 (257)
T ss_dssp HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC------------------SEEEEEESCHHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC------------------CeEEEEECCHHHHHHHHHHHHHcCCC-
Confidence 3455555 456678999999999999999999862 59999999999999999999888776
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
+++.+..+|+..+++++++||+|++..+++|+ ++..+++++.++|+|||++++.+...............+.
T Consensus 96 ~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~------- 167 (257)
T 3f4k_A 96 DRVKGITGSMDNLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWM------- 167 (257)
T ss_dssp TTEEEEECCTTSCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHH-------
T ss_pred CceEEEECChhhCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHH-------
Confidence 67999999999888888899999999999998 8999999999999999999988754221111111111111
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
.....+.+.+++.++|+++||++++.....
T Consensus 168 ---------------~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 168 ---------------DAYPEISVIPTCIDKMERAGYTPTAHFILP 197 (257)
T ss_dssp ---------------HHCTTCCBHHHHHHHHHHTTEEEEEEEECC
T ss_pred ---------------HhCCCCCCHHHHHHHHHHCCCeEEEEEECC
Confidence 011124588999999999999999987654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-20 Score=155.34 Aligned_cols=189 Identities=15% Similarity=0.081 Sum_probs=138.5
Q ss_pred HHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccC
Q 036563 43 QLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQ 122 (288)
Q Consensus 43 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (288)
+.+.++|+..+..|+......... ...+...+...+.. .+.+|||+|||+|.++..+++..
T Consensus 3 ~~~~~~y~~~a~~y~~~~~~~~~~-~~~~~~~l~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~----------------- 63 (203)
T 3h2b_A 3 DDVSKAYSSPTFDAEALLGTVISA-EDPDRVLIEPWATG-VDGVILDVGSGTGRWTGHLASLG----------------- 63 (203)
T ss_dssp CHHHHHHHCTTTCHHHHTCSSCCT-TCTTHHHHHHHHHH-CCSCEEEETCTTCHHHHHHHHTT-----------------
T ss_pred HHHHHHHhhHHHHHHHHhhhhccc-cHHHHHHHHHHhcc-CCCeEEEecCCCCHHHHHHHhcC-----------------
Confidence 467889999999997543221110 01111222222222 26799999999999999998873
Q ss_pred CCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCC
Q 036563 123 EETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRG 200 (288)
Q Consensus 123 ~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pg 200 (288)
.+++++|+++.+++.++++. +++.++.+|+.++++++++||+|++..+++|++ ++..+++++.++|+||
T Consensus 64 --~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg 134 (203)
T 3h2b_A 64 --HQIEGLEPATRLVELARQTH-------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDG 134 (203)
T ss_dssp --CCEEEECCCHHHHHHHHHHC-------TTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEE
T ss_pred --CeEEEEeCCHHHHHHHHHhC-------CCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCC
Confidence 69999999999999998873 478999999999888888999999999999997 8899999999999999
Q ss_pred cEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCee
Q 036563 201 GRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVV 280 (288)
Q Consensus 201 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~ 280 (288)
|.+++......... .+.. ... ...+++.+++.++|+++||++++.......-.
T Consensus 135 G~l~i~~~~~~~~~---------------~~~~---~~~---------~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~p~ 187 (203)
T 3h2b_A 135 GGLLMSFFSGPSLE---------------PMYH---PVA---------TAYRWPLPELAQALETAGFQVTSSHWDPRFPH 187 (203)
T ss_dssp EEEEEEEECCSSCE---------------EECC---SSS---------CEEECCHHHHHHHHHHTTEEEEEEEECTTSSE
T ss_pred cEEEEEEccCCchh---------------hhhc---hhh---------hhccCCHHHHHHHHHHCCCcEEEEEecCCCcc
Confidence 99998776554300 0000 000 01245899999999999999999988766444
Q ss_pred EEEEee
Q 036563 281 AIHSGL 286 (288)
Q Consensus 281 ~~~~~~ 286 (288)
+.+...
T Consensus 188 ~~l~~~ 193 (203)
T 3h2b_A 188 AYLTAE 193 (203)
T ss_dssp EEEEEE
T ss_pred hhhhhh
Confidence 444433
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=164.20 Aligned_cols=200 Identities=16% Similarity=0.297 Sum_probs=133.1
Q ss_pred HHHHhHhhHHHhhhhhhhh-hhhhH-HH---HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccc
Q 036563 46 SNVFSSVAKNYDLMNDLMS-GGLHR-LW---KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120 (288)
Q Consensus 46 ~~~~~~~~~~y~~~~~~~~-~~~~~-~~---~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~ 120 (288)
...|+..+..|+....... ..... .. ...++..+... +.+|||+|||+|.++..+++..
T Consensus 27 ~~~fd~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~~--------------- 90 (285)
T 4htf_A 27 DRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAERG--------------- 90 (285)
T ss_dssp -----CHHHHHHSCTTSCHHHHHHHHHHHHHHHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHTT---------------
T ss_pred ccchhhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHCC---------------
Confidence 4567888888874321111 11111 11 12344444443 5799999999999999998872
Q ss_pred cCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccC
Q 036563 121 LQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKR 199 (288)
Q Consensus 121 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~p 199 (288)
.+++++|+++.+++.++++....++. +++.++.+|+.+++ +++++||+|++..+++|++++..+++++.++|+|
T Consensus 91 ----~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkp 165 (285)
T 4htf_A 91 ----HQVILCDLSAQMIDRAKQAAEAKGVS-DNMQFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRP 165 (285)
T ss_dssp ----CEEEEEESCHHHHHHHHHHHHC-CCG-GGEEEEESCGGGTGGGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEE
T ss_pred ----CEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEEcCHHHhhhhcCCCceEEEECchhhcccCHHHHHHHHHHHcCC
Confidence 79999999999999999998877765 68999999999886 6778999999999999999999999999999999
Q ss_pred CcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 200 GGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 200 gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
||.+++.................+. .. ............ ...++++.+++.++|+++||++++...+
T Consensus 166 gG~l~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~aGf~v~~~~~~ 232 (285)
T 4htf_A 166 GGVLSLMFYNAHGLLMHNMVAGNFD-YV---QAGMPKKKKRTL-----SPDYPRDPTQVYLWLEEAGWQIMGKTGV 232 (285)
T ss_dssp EEEEEEEEEBHHHHHHHHHHTTCHH-HH---HTTCCCC----C-----CCSCCBCHHHHHHHHHHTTCEEEEEEEE
T ss_pred CeEEEEEEeCCchHHHHHHHhcCHH-HH---hhhccccccccC-----CCCCCCCHHHHHHHHHHCCCceeeeeeE
Confidence 9999987654422111111100000 00 000000000000 0123568999999999999999988765
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=160.92 Aligned_cols=165 Identities=19% Similarity=0.162 Sum_probs=130.4
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
....+.+...+...++.+|||+|||+|.++..+++..+ .+++++|+++.+++.++++....+
T Consensus 22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~------------------~~v~gvD~s~~~l~~a~~~~~~~~ 83 (256)
T 1nkv_A 22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG------------------ITGTGIDMSSLFTAQAKRRAEELG 83 (256)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC------------------CEEEEEESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcC------------------CeEEEEeCCHHHHHHHHHHHHhcC
Confidence 34445677778878889999999999999999998853 789999999999999999988877
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccc
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVI 228 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 228 (288)
+. +++.+..+|+.++++ +++||+|++..++++++++..+|+++.++|||||.+++.+......+........+.
T Consensus 84 ~~-~~v~~~~~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~---- 157 (256)
T 1nkv_A 84 VS-ERVHFIHNDAAGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACG---- 157 (256)
T ss_dssp CT-TTEEEEESCCTTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTT----
T ss_pred CC-cceEEEECChHhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHh----
Confidence 65 689999999998876 678999999999999999999999999999999999987654322211111111110
Q ss_pred ccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 229 PAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
. .....+++.+++.++|+++||++++...
T Consensus 158 --------~---------~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 186 (256)
T 1nkv_A 158 --------V---------SSTSDFLTLPGLVGAFDDLGYDVVEMVL 186 (256)
T ss_dssp --------C---------SCGGGSCCHHHHHHHHHTTTBCCCEEEE
T ss_pred --------c---------ccccccCCHHHHHHHHHHCCCeeEEEEe
Confidence 0 0012356899999999999999987654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-20 Score=162.29 Aligned_cols=172 Identities=19% Similarity=0.166 Sum_probs=130.7
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.+.+...++.+|||||||+|.++..+++..+ .+++++|+|+.+++.++++....++. .
T Consensus 62 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~------------------~~v~gvD~s~~~~~~a~~~~~~~~~~-~ 122 (302)
T 3hem_A 62 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD------------------VNVIGLTLSENQYAHDKAMFDEVDSP-R 122 (302)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC------------------CEEEEEECCHHHHHHHHHHHHHSCCS-S
T ss_pred HHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC------------------CEEEEEECCHHHHHHHHHHHHhcCCC-C
Confidence 5567777778889999999999999999999863 78999999999999999999888776 6
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCH---------HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHh
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI---------EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYY 223 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~---------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~ 223 (288)
++.+..+|+.++ +++||+|++..+++|++++ ..+++++.++|+|||.+++.+...+...........+
T Consensus 123 ~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 199 (302)
T 3hem_A 123 RKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTS 199 (302)
T ss_dssp CEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCC
T ss_pred ceEEEECCHHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccc
Confidence 899999999876 6789999999999999654 7899999999999999999888776544322110000
Q ss_pred hc---cccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC
Q 036563 224 SF---SVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277 (288)
Q Consensus 224 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 277 (288)
.. ...+.+....... ..+++.+++.++++++||++++...+..
T Consensus 200 ~~~~~~~~~~~~~~~~p~-----------~~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 200 PMSLLRFIKFILTEIFPG-----------GRLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp CHHHHHHHHHHHHHTCTT-----------CCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred cccccchHHHHHHhcCCC-----------CCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 00 0000000000000 1256889999999999999999887643
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=161.16 Aligned_cols=163 Identities=17% Similarity=0.272 Sum_probs=130.9
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+.+++.+...++.+|||+|||+|.++..+++..+ .+++++|+|+.+++.++++....
T Consensus 43 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~------------------~~v~~vD~s~~~~~~a~~~~~~~--- 101 (266)
T 3ujc_A 43 ATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYG------------------AHTHGIDICSNIVNMANERVSGN--- 101 (266)
T ss_dssp HHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHC------------------CEEEEEESCHHHHHHHHHTCCSC---
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcC------------------CEEEEEeCCHHHHHHHHHHhhcC---
Confidence 345677777778888999999999999999999853 79999999999999999886554
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccc--cCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccc
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV--THIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVI 228 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 228 (288)
+++.+..+|+..+++++++||+|++..+++|+ .++..+++++.++|+|||.+++.+...+....+......+.
T Consensus 102 -~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~---- 176 (266)
T 3ujc_A 102 -NKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYV---- 176 (266)
T ss_dssp -TTEEEEECCTTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHH----
T ss_pred -CCeEEEECccccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHH----
Confidence 47999999999988888899999999999999 78899999999999999999998876554211111111110
Q ss_pred ccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 229 PAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
......+++.+++.++|+++||++++...+.
T Consensus 177 -----------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 177 -----------------KQRKYTLITVEEYADILTACNFKNVVSKDLS 207 (266)
T ss_dssp -----------------HHHTCCCCCHHHHHHHHHHTTCEEEEEEECH
T ss_pred -----------------hcCCCCCCCHHHHHHHHHHcCCeEEEEEeCC
Confidence 0111235689999999999999999987654
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=161.30 Aligned_cols=159 Identities=14% Similarity=0.158 Sum_probs=130.2
Q ss_pred HHHHhhcC-CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 73 DRLVSKLN-PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 73 ~~~~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
+.+.+.+. ..++.+|||+|||+|.++..+++..+ .+++++|+++.+++.++++....++.
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~------------------~~v~gvD~s~~~~~~a~~~~~~~~~~- 166 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG------------------SRVEGVTLSAAQADFGNRRARELRID- 166 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC------------------CEEEEEESCHHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcC------------------CEEEEEeCCHHHHHHHHHHHHHcCCC-
Confidence 34666666 67788999999999999999998853 79999999999999999999888776
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCCh-----HHHHHHHHHhhcc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDI-----PVFKELYDYYSFS 226 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~~~~~~~~~ 226 (288)
+++.+..+|+.++++++++||+|++..+++++ +...+++++.++|+|||.+++.+...... .....+...+
T Consensus 167 ~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~--- 242 (312)
T 3vc1_A 167 DHVRSRVCNMLDTPFDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHF--- 242 (312)
T ss_dssp TTEEEEECCTTSCCCCTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHH---
T ss_pred CceEEEECChhcCCCCCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhh---
Confidence 68999999999988888899999999999999 69999999999999999999877644321 1222211111
Q ss_pred ccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 227 VIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
...+++.+++.++|+++||++++...+.
T Consensus 243 ----------------------~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 243 ----------------------ECNIHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp ----------------------TCCCCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred ----------------------cCCCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 0125588999999999999999988764
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-20 Score=158.21 Aligned_cols=189 Identities=15% Similarity=0.114 Sum_probs=133.6
Q ss_pred HHhHHHHHHHhHhhHHHhhhhhhhhh--h----hhHHHHHHHHhhcC-CCCCCeEEEecCCccHHHHHHHHhhhhhhhhh
Q 036563 40 EKSQLVSNVFSSVAKNYDLMNDLMSG--G----LHRLWKDRLVSKLN-PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRA 112 (288)
Q Consensus 40 ~~~~~~~~~~~~~~~~y~~~~~~~~~--~----~~~~~~~~~~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~ 112 (288)
...+...++|+..+..|+.....+.. . ....+.+.+...+. ..++.+|||+|||+|.++..+++..
T Consensus 29 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~------- 101 (241)
T 2ex4_A 29 QFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL------- 101 (241)
T ss_dssp HHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT-------
T ss_pred hhHHHHHHHHhcCCccccccccCCCCcchhhHHhHHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc-------
Confidence 34456677787777766643221110 0 01112222222221 2357899999999999999888764
Q ss_pred hhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHH
Q 036563 113 LQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKAL 190 (288)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l 190 (288)
..+++++|+++.+++.++++....+. .++.+..+|+..+++++++||+|++..+++++++. ..++
T Consensus 102 -----------~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l 168 (241)
T 2ex4_A 102 -----------FREVDMVDITEDFLVQAKTYLGEEGK--RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFL 168 (241)
T ss_dssp -----------CSEEEEEESCHHHHHHHHHHTGGGGG--GEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHH
T ss_pred -----------CCEEEEEeCCHHHHHHHHHHhhhcCC--ceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHH
Confidence 26999999999999999998766531 46899999998888777789999999999999874 4899
Q ss_pred HHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEE
Q 036563 191 AEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKV 270 (288)
Q Consensus 191 ~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v 270 (288)
+++.++|+|||.+++.+....... .+......+ ..+.+++.++|+++||+++
T Consensus 169 ~~~~~~LkpgG~l~i~~~~~~~~~-------------------~~~~~~~~~---------~~~~~~~~~~l~~aGf~~~ 220 (241)
T 2ex4_A 169 RRCKGSLRPNGIIVIKDNMAQEGV-------------------ILDDVDSSV---------CRDLDVVRRIICSAGLSLL 220 (241)
T ss_dssp HHHHHHEEEEEEEEEEEEEBSSSE-------------------EEETTTTEE---------EEBHHHHHHHHHHTTCCEE
T ss_pred HHHHHhcCCCeEEEEEEccCCCcc-------------------eecccCCcc---------cCCHHHHHHHHHHcCCeEE
Confidence 999999999999999876554300 000000001 2278999999999999999
Q ss_pred EEEEee
Q 036563 271 EYENLV 276 (288)
Q Consensus 271 ~~~~~~ 276 (288)
+.....
T Consensus 221 ~~~~~~ 226 (241)
T 2ex4_A 221 AEERQE 226 (241)
T ss_dssp EEEECC
T ss_pred EeeecC
Confidence 987653
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=157.46 Aligned_cols=166 Identities=22% Similarity=0.303 Sum_probs=128.6
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.......++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++....+.+
T Consensus 27 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-----------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~-- 87 (276)
T 3mgg_A 27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNN-----------------PDAEITSIDISPESLEKARENTEKNGIK-- 87 (276)
T ss_dssp HHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHC-----------------TTSEEEEEESCHHHHHHHHHHHHHTTCC--
T ss_pred HHHhhcccCCCCCeEEEecCCCCHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC--
Confidence 444455556778899999999999999999886 4689999999999999999998887663
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC------CChHHHHHHHHHhhcc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH------VDIPVFKELYDYYSFS 226 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~------~~~~~~~~~~~~~~~~ 226 (288)
++.+..+|+..+++++++||+|++..++++++++..+++++.++|+|||.+++.+... +...........+..
T Consensus 88 ~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 166 (276)
T 3mgg_A 88 NVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIR- 166 (276)
T ss_dssp SEEEEECCGGGCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHH-
T ss_pred CcEEEEcccccCCCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHH-
Confidence 7999999999988888899999999999999999999999999999999999876532 222222222221110
Q ss_pred ccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 227 VIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
.....+ ....+..++.++|+++||+++++...
T Consensus 167 ~~~~~~-----------------~~~~~~~~l~~~l~~aGf~~v~~~~~ 198 (276)
T 3mgg_A 167 VQAYMK-----------------GNSLVGRQIYPLLQESGFEKIRVEPR 198 (276)
T ss_dssp HHHHTT-----------------CCTTGGGGHHHHHHHTTCEEEEEEEE
T ss_pred HHHhcC-----------------CCcchHHHHHHHHHHCCCCeEEEeeE
Confidence 000000 11235678999999999999988754
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-20 Score=157.10 Aligned_cols=190 Identities=21% Similarity=0.221 Sum_probs=133.1
Q ss_pred HHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHh-hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCC
Q 036563 46 SNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVS-KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEE 124 (288)
Q Consensus 46 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (288)
.+.|+..+..|+..... .....+.+.+.+.. .....++.+|||+|||+|.++..+++..
T Consensus 2 ~~~~~~~a~~y~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~------------------- 61 (263)
T 2yqz_A 2 SSALLRAAYAYDRLRAH-PPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARG------------------- 61 (263)
T ss_dssp CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTT-------------------
T ss_pred CCchHHHHHHHhhhccc-ChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCC-------------------
Confidence 35688888888865432 22333333334433 2244667899999999999999888763
Q ss_pred ceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEE
Q 036563 125 TRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 125 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
.+++++|+|+.+++.++++. .... +++.+..+|+..+++++++||+|++..+++++++...+++++.++|+|||.++
T Consensus 62 ~~v~~vD~s~~~~~~a~~~~-~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 138 (263)
T 2yqz_A 62 YRYIALDADAAMLEVFRQKI-AGVD--RKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALL 138 (263)
T ss_dssp CEEEEEESCHHHHHHHHHHT-TTSC--TTEEEEESCTTSCCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHh-hccC--CceEEEEcccccCCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEE
Confidence 78999999999999999887 2222 58999999999888888899999999999999999999999999999999999
Q ss_pred EEeccCCC-hHH--HHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 205 CLELSHVD-IPV--FKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 205 i~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
+. +..++ ... +........ ...+. ..... ..+.+.+++.++|+++||+++....
T Consensus 139 ~~-~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~--------~~~~~~~~~~~~l~~~Gf~~~~~~~ 195 (263)
T 2yqz_A 139 EG-WDQAEASPEWTLQERWRAFA----AEEGF---PVERG--------LHAKRLKEVEEALRRLGLKPRTREV 195 (263)
T ss_dssp EE-EEEECCCHHHHHHHHHHHHH----HHHTC---CCCCC--------HHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EE-ecCCCccHHHHHHHHHHHHH----HHhCC---Ccccc--------cccCCHHHHHHHHHHcCCCcceEEE
Confidence 86 33321 121 111111111 00110 00000 1123678999999999999877643
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-20 Score=162.12 Aligned_cols=174 Identities=14% Similarity=0.065 Sum_probs=132.2
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..++.+|||+|||+|..+..++.... +..+++++|+++.+++.++++....++. ++++++.+|
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~----------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d 178 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSAC----------------PGVQLVGIDYDPEALDGATRLAAGHALA-GQITLHRQD 178 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTC----------------TTCEEEEEESCHHHHHHHHHHHTTSTTG-GGEEEEECC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcC----------------CCCeEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECc
Confidence 35678999999999999988853221 4689999999999999999999877765 569999999
Q ss_pred cccCCCCCCCeeEEEeccccccccCHHH---HHHHHHhhccCCcEEEEEeccCCChHHHH------------HHHHHhhc
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVTHIEK---ALAEAYRVLKRGGRFLCLELSHVDIPVFK------------ELYDYYSF 225 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~---~l~~~~~~L~pgG~l~i~~~~~~~~~~~~------------~~~~~~~~ 225 (288)
+.+++++ ++||+|+++.+++|++++.. +++++.++|+|||.+++.+...+...... .....+.
T Consensus 179 ~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~- 256 (305)
T 3ocj_A 179 AWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLV- 256 (305)
T ss_dssp GGGCCCC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHH-
T ss_pred hhcCCcc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhH-
Confidence 9998877 89999999999999987765 79999999999999998776543211000 0000000
Q ss_pred cccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeeeC
Q 036563 226 SVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288 (288)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k~ 288 (288)
+... ...++..+++.+++.++|+++||+++++.....+....+.++||
T Consensus 257 -----~~~~----------~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 257 -----FTRL----------IQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp -----HHHT----------TCCSCCCCCCHHHHHHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred -----HHHH----------HhhhhhccCCHHHHHHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 0000 00011235689999999999999999999877788888888886
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=160.28 Aligned_cols=183 Identities=13% Similarity=0.119 Sum_probs=133.5
Q ss_pred HHHHHhHhhHHHhhhhhhhh--hhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccC
Q 036563 45 VSNVFSSVAKNYDLMNDLMS--GGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQ 122 (288)
Q Consensus 45 ~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (288)
..++|+..+..|+.....+. ......+...++..+...++.+|||+|||+|.++..+++..
T Consensus 53 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~----------------- 115 (254)
T 1xtp_A 53 ALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL----------------- 115 (254)
T ss_dssp HHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-----------------
T ss_pred hhhHHhcCCccccceecCcCccCHHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh-----------------
Confidence 44455554444443322221 11223444566777777778899999999999999988874
Q ss_pred CCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCC
Q 036563 123 EETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRG 200 (288)
Q Consensus 123 ~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pg 200 (288)
..+++++|+++.+++.++++.... .++.+..+|+..+++++++||+|++..+++|++ +...+++++.++|+||
T Consensus 116 -~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 190 (254)
T 1xtp_A 116 -YATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN 190 (254)
T ss_dssp -CSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred -cCEEEEEeCCHHHHHHHHHHhccC----CceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCC
Confidence 268999999999999999887654 479999999998888888999999999999994 5789999999999999
Q ss_pred cEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 201 GRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 201 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
|.+++.+........ ....... ..+.+.+++.++|+++||++++.....
T Consensus 191 G~l~i~~~~~~~~~~------------------~~~~~~~---------~~~~~~~~~~~~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 191 GYIFFKENCSTGDRF------------------LVDKEDS---------SLTRSDIHYKRLFNESGVRVVKEAFQE 239 (254)
T ss_dssp EEEEEEEEBC--CCE------------------EEETTTT---------EEEBCHHHHHHHHHHHTCCEEEEEECT
T ss_pred eEEEEEecCCCcccc------------------eecccCC---------cccCCHHHHHHHHHHCCCEEEEeeecC
Confidence 999987753321100 0000000 113478999999999999999987643
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-20 Score=167.57 Aligned_cols=156 Identities=22% Similarity=0.257 Sum_probs=121.0
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc-----C-CCCCce
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER-----G-YPDKSL 154 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-----~-~~~~~v 154 (288)
..++.+|||+|||+|.++..+++..+ +..+++++|+++.+++.++++.... + ...+++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~----------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v 144 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVG----------------EHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNV 144 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHT----------------TTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCE
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhC----------------CCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCce
Confidence 34678999999999999999999864 4579999999999999999887643 2 222589
Q ss_pred EEEEcccccC------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCCh--HHHHHHHHHhhcc
Q 036563 155 LWVEGDAEAL------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDI--PVFKELYDYYSFS 226 (288)
Q Consensus 155 ~~~~~d~~~~------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~--~~~~~~~~~~~~~ 226 (288)
.++.+|+.++ ++++++||+|+++.++++++++..+|+++.++|||||++++.+...... .........+.
T Consensus 145 ~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-- 222 (383)
T 4fsd_A 145 RFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYG-- 222 (383)
T ss_dssp EEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHH--
T ss_pred EEEEccHHHhhhcccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhh--
Confidence 9999999887 7788899999999999999999999999999999999999876644321 11111100000
Q ss_pred ccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 227 VIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
......++.+++.++|+++||+++++..
T Consensus 223 --------------------~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 223 --------------------ECLGGALYLEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp --------------------TTCTTCCBHHHHHHHHHHTTCCCEEEEE
T ss_pred --------------------cccccCCCHHHHHHHHHHCCCceEEEEe
Confidence 0111245789999999999999887654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=153.98 Aligned_cols=159 Identities=13% Similarity=0.134 Sum_probs=117.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||||||+|.++..+++.. .+++++|+|+.+++.++++... ++.+..+|+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~-------------------~~v~gvD~s~~~~~~a~~~~~~------~v~~~~~d~ 95 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHF-------------------NDITCVEASEEAISHAQGRLKD------GITYIHSRF 95 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC-------------------SCEEEEESCHHHHHHHHHHSCS------CEEEEESCG
T ss_pred cCCCcEEEECCCCCHHHHHHHHhC-------------------CcEEEEeCCHHHHHHHHHhhhC------CeEEEEccH
Confidence 356789999999999999888764 5899999999999999887532 689999999
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHH-hhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCc
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAY-RVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRG 240 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~-~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (288)
.++ .++++||+|++..+++|++++..+|+++. ++|+|||.+++.+........... ... ...+....+.
T Consensus 96 ~~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~---~~~-~~~~~~~~~~----- 165 (250)
T 2p7i_A 96 EDA-QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIA---VKM-GIISHNSAVT----- 165 (250)
T ss_dssp GGC-CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHH---HHT-TSSSSTTCCC-----
T ss_pred HHc-CcCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHH---HHc-Cccccchhcc-----
Confidence 887 46678999999999999999999999999 999999999987765543221111 110 0111000000
Q ss_pred chhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 241 SYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
.........++++.+++.++|+++||++++...+.
T Consensus 166 -~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 200 (250)
T 2p7i_A 166 -EAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIF 200 (250)
T ss_dssp -HHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -cccccccccccCCHHHHHHHHHHCCCeEEEEeeeE
Confidence 00000111235689999999999999999887543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-19 Score=159.28 Aligned_cols=173 Identities=16% Similarity=0.135 Sum_probs=129.3
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+.+.+.+...++.+|||+|||+|.++..+++..+ .+++++|+|+.+++.++++....++.
T Consensus 78 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~------------------~~v~gvD~s~~~~~~a~~~~~~~~~~ 139 (318)
T 2fk8_A 78 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD------------------VNVIGLTLSKNQHARCEQVLASIDTN 139 (318)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC------------------CEEEEEESCHHHHHHHHHHHHTSCCS
T ss_pred HHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCC------------------CEEEEEECCHHHHHHHHHHHHhcCCC
Confidence 345667777777889999999999999999998853 79999999999999999998877765
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccc--cCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHH---HHHhhc
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV--THIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKEL---YDYYSF 225 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~---~~~~~~ 225 (288)
+++.+..+|+.+++ ++||+|++..+++|+ ++...+++++.++|+|||.+++.+...+........ ......
T Consensus 140 -~~v~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (318)
T 2fk8_A 140 -RSRQVLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETA 215 (318)
T ss_dssp -SCEEEEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHH
T ss_pred -CceEEEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhcccccccccc
Confidence 57999999998764 689999999999999 578999999999999999999988877654321100 000000
Q ss_pred cccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 226 SVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
...+.+...... ...+++.+++.++++++||+++++..+.
T Consensus 216 ~~~~~~~~~~~~-----------~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 255 (318)
T 2fk8_A 216 RFIKFIVTEIFP-----------GGRLPSTEMMVEHGEKAGFTVPEPLSLR 255 (318)
T ss_dssp HHHHHHHHHTST-----------TCCCCCHHHHHHHHHHTTCBCCCCEECH
T ss_pred chhhHHHHhcCC-----------CCcCCCHHHHHHHHHhCCCEEEEEEecc
Confidence 000000000000 0125589999999999999998877653
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.5e-19 Score=154.33 Aligned_cols=165 Identities=17% Similarity=0.165 Sum_probs=128.5
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+.+.+.+...++.+|||||||+|.++..+++..+ .+++++|+|+.+++.++++....++.
T Consensus 52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~------------------~~v~gvd~s~~~~~~a~~~~~~~~~~ 113 (287)
T 1kpg_A 52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD------------------VNVVGLTLSKNQANHVQQLVANSENL 113 (287)
T ss_dssp HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC------------------CEEEEEESCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC------------------CEEEEEECCHHHHHHHHHHHHhcCCC
Confidence 335566777777888999999999999999997763 69999999999999999998877665
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccc--cCHHHHHHHHHhhccCCcEEEEEeccCCChHHH-----------H
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV--THIEKALAEAYRVLKRGGRFLCLELSHVDIPVF-----------K 217 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-----------~ 217 (288)
+++.+..+|+.+++ ++||+|++..+++|+ .+...+++++.++|+|||.+++.+...+..... .
T Consensus 114 -~~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (287)
T 1kpg_A 114 -RSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFA 189 (287)
T ss_dssp -SCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHH
T ss_pred -CCeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCcccccccccccccccc
Confidence 68999999998765 689999999999999 678999999999999999999988766543321 0
Q ss_pred HHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 218 ELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
...... ...... ...+++.+++.++++++||+++++..+.
T Consensus 190 ~~~~~~--------~~~~~~-----------~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 190 RFLKFI--------VTEIFP-----------GGRLPSIPMVQECASANGFTVTRVQSLQ 229 (287)
T ss_dssp HHHHHH--------HHHTST-----------TCCCCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred chhhhH--------HheeCC-----------CCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 000000 000000 0125589999999999999999987653
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-19 Score=153.11 Aligned_cols=212 Identities=17% Similarity=0.157 Sum_probs=138.5
Q ss_pred HHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCC--CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCc
Q 036563 48 VFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNP--FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEET 125 (288)
Q Consensus 48 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
.|+.++..|+..... ....+.+.+.+.+.+.. .++.+|||+|||+|.++..+++.. .
T Consensus 2 ~y~~~a~~yd~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~-------------------~ 60 (246)
T 1y8c_A 2 CYNKFAHIYDKLIRA--DVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF-------------------K 60 (246)
T ss_dssp CHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS-------------------S
T ss_pred hHHHHHHHHHHHccc--cccHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC-------------------C
Confidence 467777788765431 12233444445554433 267899999999999999888763 6
Q ss_pred eEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEecc-ccccc---cCHHHHHHHHHhhccCCc
Q 036563 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAF-GIRNV---THIEKALAEAYRVLKRGG 201 (288)
Q Consensus 126 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~-~l~~~---~~~~~~l~~~~~~L~pgG 201 (288)
+++++|+++.|++.++++....+. ++.+..+|+.+++++ ++||+|++.. +++|+ .+...+|+++.++|+|||
T Consensus 61 ~~~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG 136 (246)
T 1y8c_A 61 NTWAVDLSQEMLSEAENKFRSQGL---KPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGG 136 (246)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC---CCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEE
T ss_pred cEEEEECCHHHHHHHHHHHhhcCC---CeEEEecccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCc
Confidence 899999999999999998876542 689999999888766 7899999998 99999 567889999999999999
Q ss_pred EEEEEeccCCChHHHHHHHHHhhcc--------cc----------ccccccccCCCcchhhh-HHHHhcCCChHHHHHHH
Q 036563 202 RFLCLELSHVDIPVFKELYDYYSFS--------VI----------PAIGELVAGDRGSYQYL-VESVRRFPPQEKFAAMI 262 (288)
Q Consensus 202 ~l~i~~~~~~~~~~~~~~~~~~~~~--------~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l 262 (288)
.+++.... + ...........+. .. ..+..... ....+... .....++++.+++.++|
T Consensus 137 ~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ll 212 (246)
T 1y8c_A 137 VFIFDINS-Y--YKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVR-DGEFYKRFDEEHEERAYKEEDIEKYL 212 (246)
T ss_dssp EEEEEEEC-H--HHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEE-CSSSEEEEEEEEEEECCCHHHHHHHH
T ss_pred EEEEEecC-H--HHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEe-cCCcccccEEEEEEEcCCHHHHHHHH
Confidence 99863321 1 1111100000000 00 00000000 00001000 00113467999999999
Q ss_pred HHcCCcEEEEEEee-------CCeeEEEEeeeC
Q 036563 263 SDAGFQKVEYENLV-------GGVVAIHSGLKI 288 (288)
Q Consensus 263 ~~aGf~~v~~~~~~-------~~~~~~~~~~k~ 288 (288)
+++||+++++.... .....+++++|+
T Consensus 213 ~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 213 KHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp HHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred HHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence 99999999986541 224457777775
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=152.27 Aligned_cols=171 Identities=18% Similarity=0.259 Sum_probs=123.9
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC---CCceEEEEc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP---DKSLLWVEG 159 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~v~~~~~ 159 (288)
++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....++. ..++.+..+
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~-------------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 90 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKG-------------------YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVE 90 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-------------------CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEEC
T ss_pred CCCeEEEECCCCCHHHHHHHhCC-------------------CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEe
Confidence 57899999999999999998873 79999999999999999988776542 136899999
Q ss_pred ccccCCCCCCCeeEEEeccccccccCHH---HHHHHHHhhccCCcEEEEEeccCCChH-HHHHHHHHhhccccccccccc
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTHIE---KALAEAYRVLKRGGRFLCLELSHVDIP-VFKELYDYYSFSVIPAIGELV 235 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~~~---~~l~~~~~~L~pgG~l~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 235 (288)
|+..+++++++||+|++..++++++++. .+++++.++|+|||.+++.++...... .+........ ......+...
T Consensus 91 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 169 (235)
T 3sm3_A 91 NASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDF-PITKEEGSFL 169 (235)
T ss_dssp CTTSCCSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHH-HHHCSTTEEE
T ss_pred cccccCCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhc-cchhhhcceE
Confidence 9998888888999999999999998877 899999999999999999877654322 2221111100 0011111111
Q ss_pred cCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 236 AGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
........ .....++++.+++.++|+++||+++++...
T Consensus 170 ~~~~~~~~--~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 170 ARDPETGE--TEFIAHHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp EECTTTCC--EEEEEECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred ecccccCC--cceeeEeCCHHHHHHHHHHcCCEEEEEEec
Confidence 11100000 011123669999999999999999998754
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-18 Score=158.34 Aligned_cols=174 Identities=17% Similarity=0.196 Sum_probs=136.2
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.+.++..+..+|||+|||+|.++..+++.+ +..+++++|+ +.+++.+++++...++. +
T Consensus 192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-----------------p~~~~~~~D~-~~~~~~a~~~~~~~~l~-~ 252 (369)
T 3gwz_A 192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAF-----------------PGLRGTLLER-PPVAEEARELLTGRGLA-D 252 (369)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-----------------TTCEEEEEEC-HHHHHHHHHHHHHTTCT-T
T ss_pred HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHC-----------------CCCeEEEEcC-HHHHHHHHHhhhhcCcC-C
Confidence 445566666677899999999999999999987 5689999999 99999999998887765 7
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHH--HHHHHHHhhccCCcEEEEEeccCCChHHH-HHHHHHhhccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIE--KALAEAYRVLKRGGRFLCLELSHVDIPVF-KELYDYYSFSVIP 229 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~ 229 (288)
++++..+|+. .+++. .||+|++.+++|++++.. ++|+++++.|+|||++++.+...++.... ....+...
T Consensus 253 ~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~----- 325 (369)
T 3gwz_A 253 RCEILPGDFF-ETIPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLL----- 325 (369)
T ss_dssp TEEEEECCTT-TCCCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHH-----
T ss_pred ceEEeccCCC-CCCCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHH-----
Confidence 8999999987 44554 799999999999998765 79999999999999999998876643211 11111110
Q ss_pred cccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 230 AIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
+. . ...+..+.++|+++|+++||+++++.....+...++.++|
T Consensus 326 -~~-~-------------~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 326 -LV-L-------------VGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp -HH-H-------------HSCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred -Hh-h-------------cCCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 00 0 0011348899999999999999999886677778887776
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-20 Score=160.85 Aligned_cols=175 Identities=19% Similarity=0.346 Sum_probs=125.4
Q ss_pred HHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceE
Q 036563 48 VFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRI 127 (288)
Q Consensus 48 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v 127 (288)
.|+..+..|+.... ....+.+.+.+.++..++.+|||+|||+|.++..+++. +.++
T Consensus 4 ~y~~~a~~y~~~~~-----~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-------------------~~~v 59 (261)
T 3ege_A 4 IYNSIGKQYSQTRV-----PDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQ-------------------GLFV 59 (261)
T ss_dssp ---------CCSBC-----CCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTT-------------------TCEE
T ss_pred HHHHHHHHHhhccc-----ccHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhC-------------------CCEE
Confidence 57778888876432 22346677778887778899999999999999998873 4899
Q ss_pred EEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 128 YVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 128 ~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+++|+|+.|++.++++ .++.+..+|+.++++++++||+|++..+++|++++..+++++.++|| ||++++.+
T Consensus 60 ~gvD~s~~~~~~a~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 60 YAVEPSIVMRQQAVVH--------PQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp EEECSCHHHHHSSCCC--------TTEEEECCCTTSCCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEE
T ss_pred EEEeCCHHHHHHHHhc--------cCCEEEECchhhCCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEE
Confidence 9999999998876543 37999999999988888899999999999999999999999999999 99988877
Q ss_pred ccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 208 LSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
+...... ..+.....+ .........+++.+++. +|+++||++++...+
T Consensus 131 ~~~~~~~------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~~ 178 (261)
T 3ege_A 131 FDIRLAQ------RIWLYDYFP-------------FLWEDALRFLPLDEQIN-LLQENTKRRVEAIPF 178 (261)
T ss_dssp ECGGGCC------CCGGGGTCH-------------HHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEEC
T ss_pred cCCchhH------HHHHHHHHH-------------HHhhhhhhhCCCHHHHH-HHHHcCCCceeEEEe
Confidence 6542111 000000000 00111223466788899 999999999988765
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-19 Score=153.27 Aligned_cols=113 Identities=16% Similarity=0.233 Sum_probs=99.5
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.+.+...++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++... .
T Consensus 34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~------------------~~~v~~vD~s~~~~~~a~~~~~~-----~ 90 (253)
T 3g5l_A 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG------------------AKKVLGIDLSERMLTEAKRKTTS-----P 90 (253)
T ss_dssp HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTT------------------CSEEEEEESCHHHHHHHHHHCCC-----T
T ss_pred HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcC------------------CCEEEEEECCHHHHHHHHHhhcc-----C
Confidence 456667776778899999999999999998874 14999999999999999988651 5
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
++.+..+|+..+++++++||+|++..++++++++..+++++.++|+|||.+++...
T Consensus 91 ~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 91 VVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp TEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeEEEEcchhhCCCCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 89999999999888888999999999999999999999999999999999997543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=152.97 Aligned_cols=176 Identities=13% Similarity=0.205 Sum_probs=122.2
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+...++..++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++... .+
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~------------------~~~v~~vD~s~~~~~~a~~~~~~-----~~ 90 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHG------------------ASYVLGLDLSEKMLARARAAGPD-----TG 90 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTT------------------CSEEEEEESCHHHHHHHHHTSCS-----SS
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHCC------------------CCeEEEEcCCHHHHHHHHHhccc-----CC
Confidence 46667776778899999999999999888763 13999999999999999887543 36
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccc-c---
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVI-P--- 229 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~--- 229 (288)
+.+..+|+..+++++++||+|++..+++++++...+++++.++|+|||.+++...... ........+..... .
T Consensus 91 ~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 167 (243)
T 3bkw_A 91 ITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPI---YMAPARPGWAIDAEGRRTW 167 (243)
T ss_dssp EEEEECCGGGCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHH---HHCCSSCSCEECTTSCEEE
T ss_pred ceEEEcChhhccCCCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCcc---cccCcCcceeecCCCceEE
Confidence 8999999998887778999999999999999999999999999999999998654210 00000000000000 0
Q ss_pred cccccccCCCcchhhhHHHH-hcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 230 AIGELVAGDRGSYQYLVESV-RRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
.+............++.... ....+.+++.++|+++||+++++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 168 PIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EECCTTCCEEECTTHHHHSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred eecccccccceeeeeccCceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 00000000000011111111 11358899999999999999998765
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-19 Score=147.78 Aligned_cols=171 Identities=19% Similarity=0.154 Sum_probs=129.7
Q ss_pred HHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccC
Q 036563 43 QLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQ 122 (288)
Q Consensus 43 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (288)
....++|+..+..|+..... .. ....+...+ .++.+|||+|||+|.++..+++..
T Consensus 11 ~~~~~~~~~~~~~y~~~~~~-----~~-~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~----------------- 65 (211)
T 3e23_A 11 DDTLRFYRGNATAYAERQPR-----SA-TLTKFLGEL--PAGAKILELGCGAGYQAEAMLAAG----------------- 65 (211)
T ss_dssp HHHHHHHHHSHHHHTTCCCC-----CH-HHHHHHTTS--CTTCEEEESSCTTSHHHHHHHHTT-----------------
T ss_pred HHHHHHHHHHHHHHhhccch-----hH-HHHHHHHhc--CCCCcEEEECCCCCHHHHHHHHcC-----------------
Confidence 55678899999888765432 12 222333333 357799999999999999998863
Q ss_pred CCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCC
Q 036563 123 EETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRG 200 (288)
Q Consensus 123 ~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pg 200 (288)
.+++++|+++.+++.++++. ++.+..+|+..++ ++++||+|++..+++|++ +...+|+++.++|+||
T Consensus 66 --~~v~~vD~s~~~~~~a~~~~--------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 134 (211)
T 3e23_A 66 --FDVDATDGSPELAAEASRRL--------GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPG 134 (211)
T ss_dssp --CEEEEEESCHHHHHHHHHHH--------TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred --CeEEEECCCHHHHHHHHHhc--------CCceEEeeeccCC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCC
Confidence 79999999999999998875 3567889988887 678999999999999998 7789999999999999
Q ss_pred cEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcC-CcEEEEEEeeC
Q 036563 201 GRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAG-FQKVEYENLVG 277 (288)
Q Consensus 201 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~v~~~~~~~ 277 (288)
|.+++......... . ..... ...+++.+++.++|+++| |+++++.....
T Consensus 135 G~l~~~~~~~~~~~-----------------~---~~~~~--------~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~ 184 (211)
T 3e23_A 135 GLFYASYKSGEGEG-----------------R---DKLAR--------YYNYPSEEWLRARYAEAGTWASVAVESSEG 184 (211)
T ss_dssp EEEEEEEECCSSCE-----------------E---CTTSC--------EECCCCHHHHHHHHHHHCCCSEEEEEEEEE
T ss_pred cEEEEEEcCCCccc-----------------c---cccch--------hccCCCHHHHHHHHHhCCCcEEEEEEeccC
Confidence 99998644332110 0 00000 113568999999999999 99999876543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=153.17 Aligned_cols=208 Identities=12% Similarity=0.054 Sum_probs=138.2
Q ss_pred hHHHHHHHhHhhHHHhhhhhhhhhhh-hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccc
Q 036563 42 SQLVSNVFSSVAKNYDLMNDLMSGGL-HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120 (288)
Q Consensus 42 ~~~~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~ 120 (288)
.+.+.++|+..+..|+.......... .......+...+...++.+|||+|||+|.++..+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--------------- 74 (227)
T 3e8s_A 10 EDALLDSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRG--------------- 74 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHTHHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTT---------------
T ss_pred HHHHHHHHHhhHHHHHHHhcccccccccccccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCC---------------
Confidence 46678899999888876432211111 11123445555555567899999999999999888873
Q ss_pred cCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC---CCC-CCCeeEEEeccccccccCHHHHHHHHHhh
Q 036563 121 LQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL---CFE-DSTMDGYTIAFGIRNVTHIEKALAEAYRV 196 (288)
Q Consensus 121 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~---~~~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~ 196 (288)
.+++++|+++.+++.++++ .++.+..+|+.++ ++. ..+||+|++..+++ ..++..+++++.++
T Consensus 75 ----~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~ 141 (227)
T 3e8s_A 75 ----IEAVGVDGDRTLVDAARAA--------GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQDIIELLSAMRTL 141 (227)
T ss_dssp ----CEEEEEESCHHHHHHHHHT--------CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSCCHHHHHHHHHT
T ss_pred ----CEEEEEcCCHHHHHHHHHh--------cccccchhhHHhhcccccccCCCccEEEECchhh-hhhHHHHHHHHHHH
Confidence 7899999999999999876 2567888887765 433 34599999999999 78899999999999
Q ss_pred ccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 197 LKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 197 L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
|+|||.+++.+......... . +. ... ....+......+ ......+++.+++.++|+++||+++++....
T Consensus 142 L~pgG~l~~~~~~~~~~~~~-~----~~-~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 210 (227)
T 3e8s_A 142 LVPGGALVIQTLHPWSVADG-D----YQ-DGW--REESFAGFAGDW---QPMPWYFRTLASWLNALDMAGLRLVSLQEPQ 210 (227)
T ss_dssp EEEEEEEEEEECCTTTTCTT-C----CS-CEE--EEECCTTSSSCC---CCEEEEECCHHHHHHHHHHTTEEEEEEECCC
T ss_pred hCCCeEEEEEecCccccCcc-c----cc-ccc--chhhhhccccCc---ccceEEEecHHHHHHHHHHcCCeEEEEecCC
Confidence 99999999877654321100 0 00 000 000000000000 0111235689999999999999999987632
Q ss_pred C-----CeeEEEEeeeC
Q 036563 277 G-----GVVAIHSGLKI 288 (288)
Q Consensus 277 ~-----~~~~~~~~~k~ 288 (288)
. ....+++++|+
T Consensus 211 ~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 211 HPQSAVPQSLLMVAERH 227 (227)
T ss_dssp CTTCSSCSCEEEEEEEC
T ss_pred CCCCCCceeEEEEeecC
Confidence 2 12445556664
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.6e-19 Score=151.65 Aligned_cols=164 Identities=13% Similarity=0.099 Sum_probs=121.9
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
...++..+...++.+|||+|||+|.++..+++.. +..+++++|+++.|++.++++.
T Consensus 22 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-----------------~~~~v~~~D~s~~~~~~a~~~~------- 77 (259)
T 2p35_A 22 ARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRY-----------------GVNVITGIDSDDDMLEKAADRL------- 77 (259)
T ss_dssp HHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHH-----------------CTTSEEEEESCHHHHHHHHHHS-------
T ss_pred HHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHhC-------
Confidence 3456777777778899999999999999999886 4589999999999999998872
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
+++.+..+|+..++ ++++||+|+++.++++++++..+++++.++|+|||.+++........+....+....... ..
T Consensus 78 ~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~---~~ 153 (259)
T 2p35_A 78 PNTNFGKADLATWK-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGG---PW 153 (259)
T ss_dssp TTSEEEECCTTTCC-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHS---TT
T ss_pred CCcEEEECChhhcC-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCc---ch
Confidence 57899999998887 677899999999999999999999999999999999998776544333222222211100 00
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEE
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKV 270 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v 270 (288)
...... .......+++.+++.++|+++||++.
T Consensus 154 ~~~~~~-------~~~~~~~~~~~~~~~~~l~~aGf~v~ 185 (259)
T 2p35_A 154 KDAFSG-------GGLRRKPLPPPSDYFNALSPKSSRVD 185 (259)
T ss_dssp GGGC--------------CCCCCHHHHHHHHGGGEEEEE
T ss_pred HHHhcc-------ccccccCCCCHHHHHHHHHhcCCceE
Confidence 000000 00112246789999999999999743
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-20 Score=161.19 Aligned_cols=174 Identities=17% Similarity=0.167 Sum_probs=120.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..+++.. .+++++|+|+.+++.++++. +++.++.+|+.
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~-------------------~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~ 103 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSF-------------------GTVEGLELSADMLAIARRRN-------PDAVLHHGDMR 103 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTS-------------------SEEEEEESCHHHHHHHHHHC-------TTSEEEECCTT
T ss_pred CCCcEEEeCCcCCHHHHHHHHcC-------------------CeEEEEECCHHHHHHHHhhC-------CCCEEEECChH
Confidence 46799999999999999888763 68999999999999998875 36899999999
Q ss_pred cCCCCCCCeeEEEecc-cccccc---CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccc--------
Q 036563 163 ALCFEDSTMDGYTIAF-GIRNVT---HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPA-------- 230 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~-~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-------- 230 (288)
.+++ +++||+|++.. +++|+. +...+++++.++|+|||.+++..+..+....... +.....+.
T Consensus 104 ~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 178 (263)
T 3pfg_A 104 DFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGY----VAAGTVEAGGTTVTRV 178 (263)
T ss_dssp TCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTE----EEEEEEEETTEEEEEE
T ss_pred HCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccc----cccceeccCCceeEEE
Confidence 8876 67899999998 999985 5567899999999999999985443332110000 00000000
Q ss_pred -------------ccccccCCCcchhh-hHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeeeC
Q 036563 231 -------------IGELVAGDRGSYQY-LVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288 (288)
Q Consensus 231 -------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k~ 288 (288)
+..........+.. ......++++.++++++|+++||+++++... .+...+++++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~-~~~~~~~va~K~ 249 (263)
T 3pfg_A 179 SHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGG-PSGRGLFTGLPG 249 (263)
T ss_dssp EEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESST-TTSSCEEEEEEC
T ss_pred EEEEecCcEEEEEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCC-CCCceeEEEecC
Confidence 00000000000000 0011134679999999999999999988554 345567788875
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=156.64 Aligned_cols=176 Identities=19% Similarity=0.290 Sum_probs=136.5
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+++.++..++.+|||||||+|.++..+++.. +..+++++|+ +.+++.++++....++. +
T Consensus 180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-----------------p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~ 240 (359)
T 1x19_A 180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-----------------PELDSTILNL-PGAIDLVNENAAEKGVA-D 240 (359)
T ss_dssp HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHC-----------------TTCEEEEEEC-GGGHHHHHHHHHHTTCT-T
T ss_pred HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHC-----------------CCCeEEEEec-HHHHHHHHHHHHhcCCC-C
Confidence 456666776778899999999999999999987 4689999999 99999999998877765 5
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCCh--HHHHHHHHHhhcccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDI--PVFKELYDYYSFSVI 228 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~--~~~~~~~~~~~~~~~ 228 (288)
+++++.+|+.+.++++ +|+|++..++|++++ ...+|++++++|+|||++++.+...++. +.........
T Consensus 241 ~v~~~~~d~~~~~~~~--~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~----- 313 (359)
T 1x19_A 241 RMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYI----- 313 (359)
T ss_dssp TEEEEECCTTTSCCCC--CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHG-----
T ss_pred CEEEEeCccccCCCCC--CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHH-----
Confidence 7999999998776654 499999999999987 7889999999999999999988766532 1222221110
Q ss_pred ccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeeeC
Q 036563 229 PAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288 (288)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k~ 288 (288)
...+ .... ...+.+.++|.++|+++||+++++.... ...++.++||
T Consensus 314 ~~~~----~g~~--------~~~~~t~~e~~~ll~~aGf~~v~~~~~~--~~~vi~a~kp 359 (359)
T 1x19_A 314 LGAG----MPFS--------VLGFKEQARYKEILESLGYKDVTMVRKY--DHLLVQAVKP 359 (359)
T ss_dssp GGGG----SSCC--------CCCCCCGGGHHHHHHHHTCEEEEEEEET--TEEEEEEECC
T ss_pred HhcC----CCCc--------ccCCCCHHHHHHHHHHCCCceEEEEecC--CceEEEEeCC
Confidence 0000 0000 1124689999999999999999998875 5678888886
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-18 Score=153.33 Aligned_cols=173 Identities=18% Similarity=0.195 Sum_probs=130.9
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
...+.+.++..+ .+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++....++.
T Consensus 157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~-----------------p~~~~~~~D~-~~~~~~a~~~~~~~~~~- 216 (334)
T 2ip2_A 157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAE-----------------PSARGVMLDR-EGSLGVARDNLSSLLAG- 216 (334)
T ss_dssp HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHC-----------------TTCEEEEEEC-TTCTHHHHHHTHHHHHT-
T ss_pred HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHC-----------------CCCEEEEeCc-HHHHHHHHHHHhhcCCC-
Confidence 345556666555 899999999999999999886 4679999999 99999999987665544
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHH--HHHHHHHhhccCCcEEEEEeccCCCh--HHHHHHHHHhhccc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIE--KALAEAYRVLKRGGRFLCLELSHVDI--PVFKELYDYYSFSV 227 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~--~~~~~~~~~~~~~~ 227 (288)
+++++..+|+.+ +++ +.||+|++..++|++++.. .+|+++++.|+|||++++.+...++. +......+.....
T Consensus 217 ~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~- 293 (334)
T 2ip2_A 217 ERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFM- 293 (334)
T ss_dssp TSEEEEESCTTT-CCC-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHH-
T ss_pred CcEEEecCCCCC-CCC-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHh-
Confidence 579999999876 444 5799999999999987665 89999999999999999998765532 2222222211100
Q ss_pred cccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 228 IPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
. .. .+..+.++|.++|+++||+++++... .+...++.++|
T Consensus 294 ------~-~~------------~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~~~~ 333 (334)
T 2ip2_A 294 ------A-CA------------GRHRTTEEVVDLLGRGGFAVERIVDL-PMETRMIVAAR 333 (334)
T ss_dssp ------H-HS------------CCCCBHHHHHHHHHHTTEEEEEEEEE-TTTEEEEEEEE
T ss_pred ------h-CC------------CcCCCHHHHHHHHHHCCCceeEEEEC-CCCCEEEEEEe
Confidence 0 00 01347899999999999999999876 44567777766
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-18 Score=154.80 Aligned_cols=168 Identities=17% Similarity=0.133 Sum_probs=128.4
Q ss_pred HhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 76 VSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.+.++..+..+|||+|||+|.++..+++.+ +..+++++|+ +.+++.++++....++. ++++
T Consensus 162 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-----------------p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~ 222 (332)
T 3i53_A 162 AAKYDWAALGHVVDVGGGSGGLLSALLTAH-----------------EDLSGTVLDL-QGPASAAHRRFLDTGLS-GRAQ 222 (332)
T ss_dssp GGSSCCGGGSEEEEETCTTSHHHHHHHHHC-----------------TTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEE
T ss_pred HHhCCCCCCCEEEEeCCChhHHHHHHHHHC-----------------CCCeEEEecC-HHHHHHHHHhhhhcCcC-cCeE
Confidence 334444556799999999999999999987 4689999999 99999999998887765 6899
Q ss_pred EEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccc
Q 036563 156 WVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGE 233 (288)
Q Consensus 156 ~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (288)
+..+|+. .+.+. .||+|++.+++|++++. .++|+++++.|+|||++++.+...++... ....+... +.
T Consensus 223 ~~~~d~~-~~~p~-~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~~~d~~~------~~- 292 (332)
T 3i53_A 223 VVVGSFF-DPLPA-GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHA-GTGMDLRM------LT- 292 (332)
T ss_dssp EEECCTT-SCCCC-SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---C-CHHHHHHH------HH-
T ss_pred EecCCCC-CCCCC-CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCc-cHHHHHHH------Hh-
Confidence 9999987 34454 79999999999999875 78999999999999999999887654310 01111110 00
Q ss_pred cccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 234 LVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
....+..+.++|.++|+++||+++++..... ..++.+++
T Consensus 293 -------------~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~--~~vie~r~ 331 (332)
T 3i53_A 293 -------------YFGGKERSLAELGELAAQAGLAVRAAHPISY--VSIVEMTA 331 (332)
T ss_dssp -------------HHSCCCCCHHHHHHHHHHTTEEEEEEEECSS--SEEEEEEE
T ss_pred -------------hCCCCCCCHHHHHHHHHHCCCEEEEEEECCC--cEEEEEee
Confidence 0001234889999999999999999987754 66666654
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-18 Score=154.91 Aligned_cols=175 Identities=15% Similarity=0.174 Sum_probs=132.7
Q ss_pred HHHHhhcCC--CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 73 DRLVSKLNP--FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 73 ~~~~~~l~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+++.++. .++.+|||+|||+|.++..+++.. +..+++++|++ .+++.++++....++.
T Consensus 153 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-----------------p~~~~~~~D~~-~~~~~a~~~~~~~~~~ 214 (335)
T 2r3s_A 153 QLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHN-----------------PNAEIFGVDWA-SVLEVAKENARIQGVA 214 (335)
T ss_dssp HHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHC-----------------TTCEEEEEECH-HHHHHHHHHHHHHTCG
T ss_pred HHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHC-----------------CCCeEEEEecH-HHHHHHHHHHHhcCCC
Confidence 345556665 677899999999999999999986 46899999999 9999999998877665
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCCh---HHHHHHHHHhhc
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDI---PVFKELYDYYSF 225 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~---~~~~~~~~~~~~ 225 (288)
+++++..+|+.+.+++. .||+|++.+++|++++ ...+|+++.++|+|||++++.+...++. +...........
T Consensus 215 -~~v~~~~~d~~~~~~~~-~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~ 292 (335)
T 2r3s_A 215 -SRYHTIAGSAFEVDYGN-DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVML 292 (335)
T ss_dssp -GGEEEEESCTTTSCCCS-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHH
T ss_pred -cceEEEecccccCCCCC-CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHH
Confidence 57999999998766554 4999999999999954 4789999999999999999998876532 222222222110
Q ss_pred cccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 226 SVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
.. .. ..+.++.++|.++|+++||+++++....++. .++.+++
T Consensus 293 ~~--------~~-----------~~~~~t~~~~~~ll~~aGf~~~~~~~~~~~~-~~i~~~~ 334 (335)
T 2r3s_A 293 AT--------TP-----------NGDAYTFAEYESMFSNAGFSHSQLHSLPTTQ-QQVIVAY 334 (335)
T ss_dssp HH--------SS-----------SCCCCCHHHHHHHHHHTTCSEEEEECCTTSS-SEEEEEE
T ss_pred ee--------CC-----------CCCcCCHHHHHHHHHHCCCCeeeEEECCCCc-eeEEEec
Confidence 00 00 0124589999999999999999998875543 4444444
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-18 Score=150.19 Aligned_cols=164 Identities=23% Similarity=0.306 Sum_probs=122.6
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.+.+...++.+|||+|||+|.++..+++. ..+++++|+|+.|++.++++. +
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-------------------~~~v~gvD~s~~~~~~a~~~~-------~ 100 (279)
T 3ccf_A 47 EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQS-------------------GAEVLGTDNAATMIEKARQNY-------P 100 (279)
T ss_dssp CHHHHHHCCCTTCEEEEETCTTSHHHHHHHHT-------------------TCEEEEEESCHHHHHHHHHHC-------T
T ss_pred HHHHHHhCCCCCCEEEEecCCCCHHHHHHHhC-------------------CCeEEEEECCHHHHHHHHhhC-------C
Confidence 34556667777889999999999999998883 379999999999999998765 3
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHH-HHHHHhhccccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFK-ELYDYYSFSVIPAI 231 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ 231 (288)
++.+..+|+..+++ +++||+|++..++++++++..+++++.++|+|||.+++..........+. .+..... ..
T Consensus 101 ~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-----~~ 174 (279)
T 3ccf_A 101 HLHFDVADARNFRV-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALE-----TL 174 (279)
T ss_dssp TSCEEECCTTTCCC-SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHH-----HH
T ss_pred CCEEEECChhhCCc-CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHH-----hc
Confidence 68899999998876 46899999999999999999999999999999999998766543322222 2211111 00
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
+....... ....+++.+++.++|+++||+++......
T Consensus 175 ~~~~~~~~--------~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 211 (279)
T 3ccf_A 175 GIHNPQAL--------NPWYFPSIGEYVNILEKQGFDVTYAALFN 211 (279)
T ss_dssp TCCCGGGG--------CCCCCCCHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCccccCc--------CceeCCCHHHHHHHHHHcCCEEEEEEEec
Confidence 10000000 00125689999999999999998877654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=155.53 Aligned_cols=143 Identities=17% Similarity=0.214 Sum_probs=101.7
Q ss_pred HHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCC
Q 036563 45 VSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEE 124 (288)
Q Consensus 45 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (288)
.++.|+..+..|+.....+. ..+.+.+.+..+ .+.+|||||||+|..+..+++..
T Consensus 7 f~d~F~~~a~~Y~~~Rp~yp----~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~------------------- 61 (257)
T 4hg2_A 7 FKDHFTPVADAYRAFRPRYP----RALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFF------------------- 61 (257)
T ss_dssp -------------CCCCCCC----HHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHHHHHCCCcH----HHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhC-------------------
Confidence 46778899999987643333 233445555544 34689999999999999998774
Q ss_pred ceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEE
Q 036563 125 TRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 125 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
.+|+++|+|+.|++.+++. +++.+.++|++++++++++||+|++..++|++ ++.+++++++|+|||||.|+
T Consensus 62 ~~v~gvD~s~~ml~~a~~~--------~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~ 132 (257)
T 4hg2_A 62 ERVHAVDPGEAQIRQALRH--------PRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFA 132 (257)
T ss_dssp SEEEEEESCHHHHHTCCCC--------TTEEEEECCTTCCCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEE
T ss_pred CEEEEEeCcHHhhhhhhhc--------CCceeehhhhhhhcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEE
Confidence 7899999999999876532 58999999999999999999999999999776 68889999999999999999
Q ss_pred EEeccCCC-hHHHHHHHH
Q 036563 205 CLELSHVD-IPVFKELYD 221 (288)
Q Consensus 205 i~~~~~~~-~~~~~~~~~ 221 (288)
+.....+. .+.+.....
T Consensus 133 ~~~~~~~~~~~~~~~~~~ 150 (257)
T 4hg2_A 133 AVTYGLTRVDPEVDAVVD 150 (257)
T ss_dssp EEEECCCBCCHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHH
Confidence 88776542 344444333
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=150.61 Aligned_cols=178 Identities=15% Similarity=0.106 Sum_probs=129.8
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChh------HHHHHHHHh
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPN------MLNVGKKRA 144 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~------~~~~a~~~~ 144 (288)
....+++.+...++.+|||||||+|.++..+++..+ +..+++++|+|+. +++.++++.
T Consensus 31 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g----------------~~~~v~gvD~s~~~~~~~~~~~~a~~~~ 94 (275)
T 3bkx_A 31 HRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVG----------------SSGHVTGIDIASPDYGAPLTLGQAWNHL 94 (275)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHC----------------TTCEEEEECSSCTTCCSSSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhC----------------CCCEEEEEECCccccccHHHHHHHHHHH
Confidence 335667777778889999999999999999998863 4579999999997 999999998
Q ss_pred hhcCCCCCceEEEEcc---cccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChH--HHHHH
Q 036563 145 LERGYPDKSLLWVEGD---AEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIP--VFKEL 219 (288)
Q Consensus 145 ~~~~~~~~~v~~~~~d---~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~--~~~~~ 219 (288)
...++. +++.+..+| ...+++++++||+|++..+++|++++..+++.+.++++|||.+++.+...+... .....
T Consensus 95 ~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~ 173 (275)
T 3bkx_A 95 LAGPLG-DRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHL 173 (275)
T ss_dssp HTSTTG-GGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHH
T ss_pred HhcCCC-CceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHH
Confidence 877664 589999998 444566778999999999999999998888888888888999999887765321 11111
Q ss_pred HHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 220 YDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
............. .... ..+..+++.+++.++++++||+++....+
T Consensus 174 ~~~~~~~~~~~~~---~~~~-------~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 174 QAAMIQGLLYAIA---PSDV-------ANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp HHHHHHHHHHHHS---CCTT-------CSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred HHHHHHHHHhhcc---cccc-------ccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 1111000000000 0000 01123668999999999999999988765
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.7e-20 Score=147.22 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=121.9
Q ss_pred HhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 76 VSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
++.+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++. +++.
T Consensus 10 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------------~~v~~vD~s~~~~~~a~~~~-------~~v~ 63 (170)
T 3i9f_A 10 LPNIFEGKKGVIVDYGCGNGFYCKYLLEFA-------------------TKLYCIDINVIALKEVKEKF-------DSVI 63 (170)
T ss_dssp HHHHHSSCCEEEEEETCTTCTTHHHHHTTE-------------------EEEEEECSCHHHHHHHHHHC-------TTSE
T ss_pred HHhcCcCCCCeEEEECCCCCHHHHHHHhhc-------------------CeEEEEeCCHHHHHHHHHhC-------CCcE
Confidence 344455677899999999999999998874 59999999999999998871 5899
Q ss_pred EEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccc
Q 036563 156 WVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELV 235 (288)
Q Consensus 156 ~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (288)
+..+| .++++++||+|++..++++++++..+++++.++|+|||.+++.++....... +
T Consensus 64 ~~~~d---~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~----------------~--- 121 (170)
T 3i9f_A 64 TLSDP---KEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGI----------------G--- 121 (170)
T ss_dssp EESSG---GGSCTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSS----------------S---
T ss_pred EEeCC---CCCCCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcccccc----------------C---
Confidence 99998 5567789999999999999999999999999999999999998765542110 0
Q ss_pred cCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 236 AGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
.. ....++.+++.++|+ ||++++........+.++..++
T Consensus 122 --~~---------~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~l~~~~~ 160 (170)
T 3i9f_A 122 --PP---------LSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFGLVLKRK 160 (170)
T ss_dssp --SC---------GGGCCCHHHHHHHTT--TEEEEEEECSSTTEEEEEEEEC
T ss_pred --ch---------HhhhcCHHHHHHHHh--CcEEEEccCCCCceEEEEEecC
Confidence 00 012458899999999 9999999988777666665554
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-19 Score=149.15 Aligned_cols=211 Identities=16% Similarity=0.119 Sum_probs=131.3
Q ss_pred HHHh-HhhHHHhhhhhhhhh---hhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccC
Q 036563 47 NVFS-SVAKNYDLMNDLMSG---GLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQ 122 (288)
Q Consensus 47 ~~~~-~~~~~y~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (288)
++|+ ..+..|+........ ...+.+.+.+...+ .++.+|||+|||+|.++..+++..
T Consensus 2 ~~y~~~~a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~----------------- 62 (239)
T 3bxo_A 2 HMYEVDHADVYDLFYLGRGKDYAAEASDIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEF----------------- 62 (239)
T ss_dssp --CCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHH-----------------
T ss_pred ccccchhHHHHHHHhhccHhhHHHHHHHHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhC-----------------
Confidence 3455 666677655322111 11122223333333 456799999999999999998875
Q ss_pred CCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEecc-cccccc---CHHHHHHHHHhhcc
Q 036563 123 EETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAF-GIRNVT---HIEKALAEAYRVLK 198 (288)
Q Consensus 123 ~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~-~l~~~~---~~~~~l~~~~~~L~ 198 (288)
.+++++|+++.+++.++++. +++.+..+|+.++++ +++||+|+|.. +++|+. +...+++++.++|+
T Consensus 63 --~~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 132 (239)
T 3bxo_A 63 --GDTAGLELSEDMLTHARKRL-------PDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLE 132 (239)
T ss_dssp --SEEEEEESCHHHHHHHHHHC-------TTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEE
T ss_pred --CcEEEEeCCHHHHHHHHHhC-------CCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcC
Confidence 48999999999999998874 468999999988776 56899999654 888884 45789999999999
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHhhcc----ccc--------------cccccccCCCcch-hhhHHHHhcCCChHHHH
Q 036563 199 RGGRFLCLELSHVDIPVFKELYDYYSFS----VIP--------------AIGELVAGDRGSY-QYLVESVRRFPPQEKFA 259 (288)
Q Consensus 199 pgG~l~i~~~~~~~~~~~~~~~~~~~~~----~~~--------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 259 (288)
|||.+++.++..+....-... ...... .+. .+........... .+......++++.++++
T Consensus 133 pgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 211 (239)
T 3bxo_A 133 PGGVVVVEPWWFPETFADGWV-SADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAEYE 211 (239)
T ss_dssp EEEEEEECCCCCTTTCCTTCE-EEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHH
T ss_pred CCeEEEEEeccCcccccccce-EeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEEEEEEEeeecCHHHHH
Confidence 999999865544321100000 000000 000 0000000000000 00001122467999999
Q ss_pred HHHHHcCCcEEEEEEeeCCeeEEEEeeeC
Q 036563 260 AMISDAGFQKVEYENLVGGVVAIHSGLKI 288 (288)
Q Consensus 260 ~~l~~aGf~~v~~~~~~~~~~~~~~~~k~ 288 (288)
++|+++||+++.+.. ..+...+++++|+
T Consensus 212 ~ll~~aGF~v~~~~~-~~~~~~~~va~K~ 239 (239)
T 3bxo_A 212 AAFTAAGLRVEYLEG-GPSGRGLFVGVPA 239 (239)
T ss_dssp HHHHHTTEEEEEESS-TTTSSCEEEEEEC
T ss_pred HHHHHCCCEEEEeEc-CCCCceEEEEecC
Confidence 999999997666543 3455778888886
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-18 Score=154.84 Aligned_cols=174 Identities=19% Similarity=0.262 Sum_probs=132.8
Q ss_pred HHHhhcCCCC-CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 74 RLVSKLNPFP-GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 74 ~~~~~l~~~~-~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
.+++.++..+ +.+|||||||+|.++..+++.+ +..+++++|+ +.+++.++++....++. +
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-----------------p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~ 229 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRH-----------------PQLTGQIWDL-PTTRDAARKTIHAHDLG-G 229 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHC-----------------TTCEEEEEEC-GGGHHHHHHHHHHTTCG-G
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhC-----------------CCCeEEEEEC-HHHHHHHHHHHHhcCCC-C
Confidence 4555555555 7899999999999999999987 4689999999 88999999988877665 6
Q ss_pred ceEEEEcccccCC-CCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEeccCCCh---HHHHHHHHHhhcc
Q 036563 153 SLLWVEGDAEALC-FEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLELSHVDI---PVFKELYDYYSFS 226 (288)
Q Consensus 153 ~v~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~---~~~~~~~~~~~~~ 226 (288)
++++..+|+.+.+ +..+.||+|++.+++|++++. ..+|+++++.|+|||++++.+...++. +.....++.....
T Consensus 230 ~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~ 309 (352)
T 3mcz_A 230 RVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMV 309 (352)
T ss_dssp GEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHH
T ss_pred ceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHh
Confidence 7999999988765 134569999999999999865 789999999999999999998766542 2222222221100
Q ss_pred ccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeeeC
Q 036563 227 VIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288 (288)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k~ 288 (288)
.... .+..+.++|+++|+++||++++.. .|...++.++||
T Consensus 310 --------~~~~-----------~~~~t~~e~~~ll~~aGf~~~~~~---~g~~~l~~a~kp 349 (352)
T 3mcz_A 310 --------NTNH-----------GELHPTPWIAGVVRDAGLAVGERS---IGRYTLLIGQRS 349 (352)
T ss_dssp --------HSTT-----------CCCCCHHHHHHHHHHTTCEEEEEE---ETTEEEEEEECC
T ss_pred --------hCCC-----------CCcCCHHHHHHHHHHCCCceeeec---cCceEEEEEecC
Confidence 0000 013478999999999999999842 466888888886
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-18 Score=149.41 Aligned_cols=158 Identities=16% Similarity=0.229 Sum_probs=110.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCce--EEEEeCChhHHHHHHHHhhhc-CCCCCce--EE
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETR--IYVCDINPNMLNVGKKRALER-GYPDKSL--LW 156 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~D~s~~~~~~a~~~~~~~-~~~~~~v--~~ 156 (288)
.++.+|||||||+|.++..++...... + +... ++++|+|+.|++.++++.... +. +++ .+
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~------------~-~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~--~~v~~~~ 115 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQ------------Y-PGVCINNEVVEPSAEQIAKYKELVAKTSNL--ENVKFAW 115 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHH------------S-TTCEEEEEEECSCHHHHHHHHHHHHTCSSC--TTEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhh------------C-CCceeeEEEEeCCHHHHHHHHHHHHhccCC--CcceEEE
Confidence 456799999999998876655443100 0 2343 499999999999999987643 33 244 44
Q ss_pred EEcccccCC------CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccc
Q 036563 157 VEGDAEALC------FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPA 230 (288)
Q Consensus 157 ~~~d~~~~~------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (288)
..++++.++ +++++||+|++..++||++|+..+|++++++|||||++++...... ..+ ...+..+.. .
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~-~~~-~~~~~~~~~----~ 189 (292)
T 2aot_A 116 HKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS-SGW-DKLWKKYGS----R 189 (292)
T ss_dssp ECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT-SHH-HHHHHHHGG----G
T ss_pred EecchhhhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCC-ccH-HHHHHHHHH----h
Confidence 566665443 4577899999999999999999999999999999999998765432 222 222222210 0
Q ss_pred ccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEE
Q 036563 231 IGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYE 273 (288)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 273 (288)
++ .. ....+++.+++.++|+++||+++...
T Consensus 190 ~~----~~---------~~~~~~~~~~~~~~l~~aGf~~~~~~ 219 (292)
T 2aot_A 190 FP----QD---------DLCQYITSDDLTQMLDNLGLKYECYD 219 (292)
T ss_dssp SC----CC---------TTCCCCCHHHHHHHHHHHTCCEEEEE
T ss_pred cc----CC---------CcccCCCHHHHHHHHHHCCCceEEEE
Confidence 00 00 01235688999999999999987643
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=152.71 Aligned_cols=213 Identities=14% Similarity=0.131 Sum_probs=123.7
Q ss_pred hHHHHHHHhHhhHHHhhhhhh---hhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccc
Q 036563 42 SQLVSNVFSSVAKNYDLMNDL---MSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLE 118 (288)
Q Consensus 42 ~~~~~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~ 118 (288)
.+.+.++|+..+..|...... ........|....+......++.+|||+|||+|.++..+++..
T Consensus 20 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~------------- 86 (298)
T 1ri5_A 20 KEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAG------------- 86 (298)
T ss_dssp ---------------------CCSHHHHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHT-------------
T ss_pred HHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHCC-------------
Confidence 345677787777666533211 1111122233222221223567899999999999998877752
Q ss_pred cccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCC-CCCCeeEEEecccccc----ccCHHHHHHHH
Q 036563 119 DDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCF-EDSTMDGYTIAFGIRN----VTHIEKALAEA 193 (288)
Q Consensus 119 ~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~v~~~~~l~~----~~~~~~~l~~~ 193 (288)
..+++++|+++.+++.++++....+.. .++.+..+|+...++ ++++||+|++..++++ ..+...+++++
T Consensus 87 -----~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~ 160 (298)
T 1ri5_A 87 -----IGEYYGVDIAEVSINDARVRARNMKRR-FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNI 160 (298)
T ss_dssp -----CSEEEEEESCHHHHHHHHHHHHTSCCS-SEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHH
T ss_pred -----CCEEEEEECCHHHHHHHHHHHHhcCCC-ccEEEEECCccccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHH
Confidence 369999999999999999998876654 579999999988876 5778999999999976 35678899999
Q ss_pred HhhccCCcEEEEEeccCCChHHHHHHHHHhhcc-cccc-ccc--cccC-CCcchh-hhHH----HHhcCCChHHHHHHHH
Q 036563 194 YRVLKRGGRFLCLELSHVDIPVFKELYDYYSFS-VIPA-IGE--LVAG-DRGSYQ-YLVE----SVRRFPPQEKFAAMIS 263 (288)
Q Consensus 194 ~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~--~~~~-~~~~~~-~~~~----~~~~~~~~~~~~~~l~ 263 (288)
.++|+|||.+++...... .....+....... .... ... .... ....|. ++.+ ...++++.++++++|+
T Consensus 161 ~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~ 238 (298)
T 1ri5_A 161 ARHLRPGGYFIMTVPSRD--VILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFK 238 (298)
T ss_dssp HHTEEEEEEEEEEEECHH--HHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHH
T ss_pred HHhcCCCCEEEEEECCHH--HHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHHHHHHHHH
Confidence 999999999998654321 1111111100000 0000 000 0000 000111 0111 1134678999999999
Q ss_pred HcCCcEEEEEEe
Q 036563 264 DAGFQKVEYENL 275 (288)
Q Consensus 264 ~aGf~~v~~~~~ 275 (288)
++||++++...+
T Consensus 239 ~aGf~~v~~~~~ 250 (298)
T 1ri5_A 239 RLGLSLVERKGF 250 (298)
T ss_dssp TTTEEEEEEEEH
T ss_pred HcCCEEEEecCH
Confidence 999999998765
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-17 Score=152.27 Aligned_cols=174 Identities=20% Similarity=0.221 Sum_probs=129.4
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.+.++..++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.++++....++. +
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-----------------~~~~~~~~D~-~~~~~~a~~~~~~~~~~-~ 232 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRA-----------------PHLRGTLVEL-AGPAERARRRFADAGLA-D 232 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-----------------TTCEEEEEEC-HHHHHHHHHHHHHTTCT-T
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHC-----------------CCCEEEEEeC-HHHHHHHHHHHHhcCCC-C
Confidence 445566666678899999999999999999986 4689999999 99999999998877765 5
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHH--HHHHHHHhhccCCcEEEEEec--cCCCh--HHHHHHHHHhhcc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIE--KALAEAYRVLKRGGRFLCLEL--SHVDI--PVFKELYDYYSFS 226 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~--~~~~~--~~~~~~~~~~~~~ 226 (288)
++++..+|+.+ +++. .||+|++.+++|++++.. .+|+++.++|+|||++++.+. ..++. .......+....
T Consensus 233 ~v~~~~~d~~~-~~~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~- 309 (374)
T 1qzz_A 233 RVTVAEGDFFK-PLPV-TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRML- 309 (374)
T ss_dssp TEEEEECCTTS-CCSC-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHH-
T ss_pred ceEEEeCCCCC-cCCC-CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHH-
Confidence 89999999865 3343 499999999999998764 899999999999999999887 54432 222222221110
Q ss_pred ccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCee----EEEEeee
Q 036563 227 VIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVV----AIHSGLK 287 (288)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~----~~~~~~k 287 (288)
...+ .+.++.++|.++|+++||+++++.......+ .++.++|
T Consensus 310 --~~~~-----------------~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 310 --TFMG-----------------GRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp --HHHS-----------------CCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred --HhCC-----------------CcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 0000 1245899999999999999999988754331 5666655
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-18 Score=149.71 Aligned_cols=117 Identities=18% Similarity=0.224 Sum_probs=100.6
Q ss_pred HHHHhhc-CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 73 DRLVSKL-NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 73 ~~~~~~l-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
+.+...+ ...++.+|||+|||+|.++..+++.++ +..+++++|+++.+++.++++....+
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~----------------~~~~v~gvD~s~~~~~~a~~~~~~~~--- 71 (284)
T 3gu3_A 11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLP----------------EGSKYTGIDSGETLLAEARELFRLLP--- 71 (284)
T ss_dssp HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSC----------------TTCEEEEEESCHHHHHHHHHHHHSSS---
T ss_pred HHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHhcC---
Confidence 3344433 456778999999999999999988863 24899999999999999999887654
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
.++.+..+|+.+++++ ++||+|++..++++++++..+++++.++|+|||++++.+..
T Consensus 72 ~~v~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 72 YDSEFLEGDATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SEEEEEESCTTTCCCS-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CceEEEEcchhhcCcC-CCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 4799999999988774 58999999999999999999999999999999999988765
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-18 Score=157.11 Aligned_cols=173 Identities=14% Similarity=0.146 Sum_probs=128.5
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
....+|||||||+|.++..+++.+ |..+++++|+ +.+++.++++....++. ++++++.+|+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-----------------p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~ 238 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-----------------KEVEVTIVDL-PQQLEMMRKQTAGLSGS-ERIHGHGANL 238 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-----------------TTCEEEEEEC-HHHHHHHHHHHTTCTTG-GGEEEEECCC
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-----------------CCCEEEEEeC-HHHHHHHHHHHHhcCcc-cceEEEEccc
Confidence 345799999999999999999987 5689999999 99999999998877665 6899999999
Q ss_pred ccC--CCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccC
Q 036563 162 EAL--CFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAG 237 (288)
Q Consensus 162 ~~~--~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (288)
... +++ ++||+|++..++|++++. ..+|+++++.|+|||++++.+...+........+....... .+......
T Consensus 239 ~~~~~~~p-~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 315 (363)
T 3dp7_A 239 LDRDVPFP-TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISL--YFTAMANG 315 (363)
T ss_dssp CSSSCCCC-CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHH--HHHHSSCS
T ss_pred cccCCCCC-CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhh--hHHhhhCC
Confidence 875 355 689999999999998765 57899999999999999999877654332211110000000 00000000
Q ss_pred CCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 238 DRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
. .+..+.++|.++|+++||+++++....+....++..+|
T Consensus 316 ~-----------~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 316 N-----------SKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp S-----------CCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred C-----------CcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 0 11348899999999999999999877666566666554
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-18 Score=152.80 Aligned_cols=173 Identities=19% Similarity=0.246 Sum_probs=131.6
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+...++..+..+|||||||+|.++..+++.+ |+.+++.+|. |.+++.+++.....+. +
T Consensus 169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~-----------------p~~~~~~~dl-p~v~~~a~~~~~~~~~--~ 228 (353)
T 4a6d_A 169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLY-----------------PGCKITVFDI-PEVVWTAKQHFSFQEE--E 228 (353)
T ss_dssp HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHC-----------------SSCEEEEEEC-HHHHHHHHHHSCC--C--C
T ss_pred HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhC-----------------CCceeEeccC-HHHHHHHHHhhhhccc--C
Confidence 345555566667799999999999999999998 6789999997 8899999888765442 6
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEeccCCC---hHHHHHHHHHhhccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLELSHVD---IPVFKELYDYYSFSV 227 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~---~~~~~~~~~~~~~~~ 227 (288)
+++++.+|+...+.+ .+|+|++..++|+++|. .++|+++++.|+|||+++++|...++ .+.....++.....
T Consensus 229 rv~~~~gD~~~~~~~--~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~- 305 (353)
T 4a6d_A 229 QIDFQEGDFFKDPLP--EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLV- 305 (353)
T ss_dssp SEEEEESCTTTSCCC--CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHH-
T ss_pred ceeeecCccccCCCC--CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHH-
Confidence 899999998765544 48999999999999875 57899999999999999999986553 23333333322100
Q ss_pred cccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeeeC
Q 036563 228 IPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLKI 288 (288)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k~ 288 (288)
.. ... -.|.++|+++|+++||+++++.+. ++...++.++|.
T Consensus 306 ------~~--~g~-----------ert~~e~~~ll~~AGf~~v~v~~~-~~~~~~i~ArKg 346 (353)
T 4a6d_A 306 ------QT--EGQ-----------ERTPTHYHMLLSSAGFRDFQFKKT-GAIYDAILARKG 346 (353)
T ss_dssp ------SS--SCC-----------CCCHHHHHHHHHHHTCEEEEEECC-SSSCEEEEEECC
T ss_pred ------hC--CCc-----------CCCHHHHHHHHHHCCCceEEEEEc-CCceEEEEEEec
Confidence 00 111 127899999999999999999875 566778888884
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-18 Score=144.73 Aligned_cols=209 Identities=19% Similarity=0.344 Sum_probs=135.4
Q ss_pred HHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceE
Q 036563 48 VFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRI 127 (288)
Q Consensus 48 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v 127 (288)
.|+..+..|+.... ......+.+.+...+.. +.+|||+|||+|.++..+++. .++
T Consensus 3 ~y~~~a~~yd~~~~---~~~~~~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~--------------------~~v 57 (243)
T 3d2l_A 3 AYEQFAYVYDELMQ---DVPYPEWVAWVLEQVEP--GKRIADIGCGTGTATLLLADH--------------------YEV 57 (243)
T ss_dssp ---CTTHHHHHHTT---TCCHHHHHHHHHHHSCT--TCEEEEESCTTCHHHHHHTTT--------------------SEE
T ss_pred hHHHHHHHHHHhhh---cccHHHHHHHHHHHcCC--CCeEEEecCCCCHHHHHHhhC--------------------CeE
Confidence 57788888886543 22234566667676653 579999999999998877654 589
Q ss_pred EEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEecc-ccccc---cCHHHHHHHHHhhccCCcEE
Q 036563 128 YVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAF-GIRNV---THIEKALAEAYRVLKRGGRF 203 (288)
Q Consensus 128 ~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~-~l~~~---~~~~~~l~~~~~~L~pgG~l 203 (288)
+++|+++.+++.++++....+ .++.+..+|+.+.+++ ++||+|++.. +++|+ .+...+++++.++|+|||.+
T Consensus 58 ~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l 133 (243)
T 3d2l_A 58 TGVDLSEEMLEIAQEKAMETN---RHVDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKL 133 (243)
T ss_dssp EEEESCHHHHHHHHHHHHHTT---CCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEECCHHHHHHHHHhhhhcC---CceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEE
Confidence 999999999999999887654 4689999999888765 6899999987 88888 35678999999999999999
Q ss_pred EEEeccCCChHHHHHHHHHhhcc--------cc-c-----------cccccccCCCcchhhh-HHHHhcCCChHHHHHHH
Q 036563 204 LCLELSHVDIPVFKELYDYYSFS--------VI-P-----------AIGELVAGDRGSYQYL-VESVRRFPPQEKFAAMI 262 (288)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~~~~~--------~~-~-----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l 262 (288)
++... .+ ...........+. .. . .+..........|... .....++++.+++.++|
T Consensus 134 ~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 210 (243)
T 3d2l_A 134 LFDVH-SP--YKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWL 210 (243)
T ss_dssp EEEEE-CH--HHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEECTTSCEEEEEEEEEEECCCHHHHHHHH
T ss_pred EEEcC-CH--HHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEEcCCCceEEEEEEEeEecCCHHHHHHHH
Confidence 86322 11 1111100000000 00 0 0000000000001000 01123467999999999
Q ss_pred HHcCCcEEEEEEee-------CCeeEEEEeeeC
Q 036563 263 SDAGFQKVEYENLV-------GGVVAIHSGLKI 288 (288)
Q Consensus 263 ~~aGf~~v~~~~~~-------~~~~~~~~~~k~ 288 (288)
+++||+++++.... .+..-+++++|+
T Consensus 211 ~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K~ 243 (243)
T 3d2l_A 211 REAGFRVCAVTGDFKSDAPTETAERIFFVAEKI 243 (243)
T ss_dssp HHTTEEEEEEEETTSSSCCCTTCSEEEEEEEEC
T ss_pred HHCCCeEEEEecCcccCCCCCCceEEEEEEEeC
Confidence 99999999886431 234457778875
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-17 Score=149.43 Aligned_cols=175 Identities=19% Similarity=0.196 Sum_probs=132.5
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.+.++..++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.++++....++. +
T Consensus 173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-----------------~~~~~~~~D~-~~~~~~a~~~~~~~~~~-~ 233 (360)
T 1tw3_A 173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-----------------PHVSATVLEM-AGTVDTARSYLKDEGLS-D 233 (360)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-----------------TTCEEEEEEC-TTHHHHHHHHHHHTTCT-T
T ss_pred HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhC-----------------CCCEEEEecC-HHHHHHHHHHHHhcCCC-C
Confidence 345566666777899999999999999999886 4689999999 99999999998877665 5
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEecc-CCChH--HHHHHHHHhhccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLELS-HVDIP--VFKELYDYYSFSV 227 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~-~~~~~--~~~~~~~~~~~~~ 227 (288)
+++++.+|+.+ +++. .||+|++..++|++++. ..+++++.++|+|||++++.+.. .++.. .+....+.....
T Consensus 234 ~v~~~~~d~~~-~~~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~- 310 (360)
T 1tw3_A 234 RVDVVEGDFFE-PLPR-KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLV- 310 (360)
T ss_dssp TEEEEECCTTS-CCSS-CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHH-
T ss_pred ceEEEeCCCCC-CCCC-CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhh-
Confidence 89999999865 3343 49999999999999866 57999999999999999998877 44221 222222211100
Q ss_pred cccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCC----eeEEEEeeeC
Q 036563 228 IPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGG----VVAIHSGLKI 288 (288)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~----~~~~~~~~k~ 288 (288)
..+ .+..+.++|.++|+++||+++++...... ...++.++|+
T Consensus 311 --~~~-----------------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 311 --FLG-----------------GALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp --HHS-----------------CCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEEC
T ss_pred --hcC-----------------CcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEeC
Confidence 000 12458999999999999999999887543 2567777664
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=147.20 Aligned_cols=141 Identities=16% Similarity=0.091 Sum_probs=114.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....+.. .++.+..+|+.+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~-------------------~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~ 126 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASP-------------------ERFVVGLDISESALAKANETYGSSPKA-EYFSFVKEDVFT 126 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBT-------------------TEEEEEECSCHHHHHHHHHHHTTSGGG-GGEEEECCCTTT
T ss_pred CCCEEEeCCCCCHHHHHHHhC-------------------CCeEEEEECCHHHHHHHHHHhhccCCC-cceEEEECchhc
Confidence 359999999999999888653 478999999999999999988664333 579999999988
Q ss_pred CCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcc
Q 036563 164 LCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGS 241 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (288)
++ ++++||+|++..++++++ +...+++++.++|+|||.+++.++...... .+. .
T Consensus 127 ~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---------------------~~~--~ 182 (235)
T 3lcc_A 127 WR-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHV---------------------GGP--P 182 (235)
T ss_dssp CC-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCC---------------------SCS--S
T ss_pred CC-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccC---------------------CCC--C
Confidence 76 445899999999999998 788999999999999999998766443110 000 0
Q ss_pred hhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC
Q 036563 242 YQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277 (288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 277 (288)
...+.+++.++|+++||+++++.....
T Consensus 183 ---------~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 209 (235)
T 3lcc_A 183 ---------YKVDVSTFEEVLVPIGFKAVSVEENPH 209 (235)
T ss_dssp ---------CCCCHHHHHHHHGGGTEEEEEEEECTT
T ss_pred ---------ccCCHHHHHHHHHHcCCeEEEEEecCC
Confidence 124789999999999999999887653
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.2e-18 Score=142.19 Aligned_cols=116 Identities=26% Similarity=0.338 Sum_probs=96.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.+.+.+.+.++ ++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....+
T Consensus 27 ~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~-------------------~~v~~vD~s~~~~~~a~~~~~~~~- 84 (227)
T 1ve3_A 27 TLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYG-------------------FEVVGVDISEDMIRKAREYAKSRE- 84 (227)
T ss_dssp HHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTT-------------------CEEEEEESCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcC-------------------CEEEEEECCHHHHHHHHHHHHhcC-
Confidence 33444555544 36799999999999998888764 499999999999999999887654
Q ss_pred CCCceEEEEcccccCCCCCCCeeEEEeccc--cccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 150 PDKSLLWVEGDAEALCFEDSTMDGYTIAFG--IRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~--l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
.++.+..+|+.++++++++||+|+++.+ +++..+...+++++.++|+|||.+++.+..
T Consensus 85 --~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 85 --SNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp --CCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --CCceEEECchhcCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 4799999999888777789999999999 555567889999999999999999987654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-18 Score=141.02 Aligned_cols=135 Identities=30% Similarity=0.395 Sum_probs=103.7
Q ss_pred HHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceE
Q 036563 48 VFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRI 127 (288)
Q Consensus 48 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v 127 (288)
+|+..+..|+.................++..+.. ++.+|||+|||+|.++..+ + ..++
T Consensus 2 ~fd~~a~~y~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~vLdiG~G~G~~~~~l----~-----------------~~~v 59 (211)
T 2gs9_A 2 PFASLAEAYEAWYGTPLGAYVIAEEERALKGLLP-PGESLLEVGAGTGYWLRRL----P-----------------YPQK 59 (211)
T ss_dssp TTTTTTTTTTGGGGSHHHHHHHHHHHHHHHTTCC-CCSEEEEETCTTCHHHHHC----C-----------------CSEE
T ss_pred chhhHHHHHHHHhcccchhhhHHHHHHHHHHhcC-CCCeEEEECCCCCHhHHhC----C-----------------CCeE
Confidence 4666777777653322211111222233343333 6789999999999988766 2 1389
Q ss_pred EEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 128 YVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 128 ~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+++|+++.+++.++++. +++.+..+|+.++++++++||+|++..+++|++++..+++++.++|+|||.+++..
T Consensus 60 ~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 60 VGVEPSEAMLAVGRRRA-------PEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp EEECCCHHHHHHHHHHC-------TTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCHHHHHHHHHhC-------CCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence 99999999999998875 36889999999888888899999999999999999999999999999999999877
Q ss_pred ccCC
Q 036563 208 LSHV 211 (288)
Q Consensus 208 ~~~~ 211 (288)
....
T Consensus 133 ~~~~ 136 (211)
T 2gs9_A 133 LEAL 136 (211)
T ss_dssp ECTT
T ss_pred cCCc
Confidence 6543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-18 Score=145.14 Aligned_cols=151 Identities=18% Similarity=0.220 Sum_probs=115.1
Q ss_pred HHHHhhcC-CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 73 DRLVSKLN-PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 73 ~~~~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
+.+...+. ..++.+|||||||+|.++..+++.. .+++++|+|+.+++.++++
T Consensus 30 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~-------------------~~v~gvD~s~~~~~~a~~~-------- 82 (240)
T 3dli_A 30 ARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEG-------------------IESIGVDINEDMIKFCEGK-------- 82 (240)
T ss_dssp HHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHT-------------------CCEEEECSCHHHHHHHHTT--------
T ss_pred HHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCC-------------------CcEEEEECCHHHHHHHHhh--------
Confidence 34444443 3456899999999999998888762 6899999999999988753
Q ss_pred CceEEEEcccccC--CCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccc
Q 036563 152 KSLLWVEGDAEAL--CFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSV 227 (288)
Q Consensus 152 ~~v~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 227 (288)
+.+..+|+.+. ++++++||+|++..+++|+++ ...+++++.++|+|||.+++.......... ....+.
T Consensus 83 --~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---~~~~~~--- 154 (240)
T 3dli_A 83 --FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYS---LINFYI--- 154 (240)
T ss_dssp --SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHH---HHHHTT---
T ss_pred --cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHH---HHHHhc---
Confidence 67888888775 677889999999999999984 489999999999999999987665432221 111110
Q ss_pred cccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 228 IPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
. . ....+++.+++.++|+++||++++...+.
T Consensus 155 --------~--~--------~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 155 --------D--P--------THKKPVHPETLKFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp --------S--T--------TCCSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred --------C--c--------cccccCCHHHHHHHHHHCCCeEEEEEEec
Confidence 0 0 01125588999999999999999887764
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=144.92 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=98.8
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+.+.+.+...++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...+++.
T Consensus 18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-----------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~ 80 (217)
T 3jwh_A 18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDS-----------------FFEQITGVDVSYRSLEIAQERLDRLRLPR 80 (217)
T ss_dssp HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCT-----------------TCSEEEEEESCHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhC-----------------CCCEEEEEECCHHHHHHHHHHHHHhcCCc
Confidence 3455555555667899999999999999998875 34799999999999999999987665530
Q ss_pred ---CceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEe
Q 036563 152 ---KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 152 ---~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.++.+..+|+...+.+.++||+|++..+++|+++. ..+++++.++|+|||.+++..
T Consensus 81 ~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 81 NQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp HHHTTEEEEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ccCcceEEEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 27999999987776666789999999999999855 789999999999999777543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-18 Score=140.63 Aligned_cols=149 Identities=15% Similarity=0.101 Sum_probs=117.5
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+.+.+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....+++ +
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-------------------~~v~~vD~s~~~~~~a~~~~~~~~~~--~ 81 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG-------------------YDVDAWDKNAMSIANVERIKSIENLD--N 81 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTT-------------------CEEEEEESCHHHHHHHHHHHHHHTCT--T
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCC-------------------CeEEEEECCHHHHHHHHHHHHhCCCC--C
Confidence 34455665667899999999999999988862 79999999999999999988777653 6
Q ss_pred eEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
+.+..+|+.+.++ +++||+|++..++++++ +...+++++.++|+|||.+++++....... .
T Consensus 82 ~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~---------~------- 144 (199)
T 2xvm_A 82 LHTRVVDLNNLTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY---------P------- 144 (199)
T ss_dssp EEEEECCGGGCCC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSS---------C-------
T ss_pred cEEEEcchhhCCC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCc---------C-------
Confidence 9999999998877 77899999999999987 788999999999999999887665433210 0
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
.... + ...++.++++++|++ |++++....
T Consensus 145 ----~~~~--~-------~~~~~~~~l~~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 145 ----CTVG--F-------PFAFKEGELRRYYEG--WERVKYNED 173 (199)
T ss_dssp ----CCSC--C-------SCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred ----CCCC--C-------CCccCHHHHHHHhcC--CeEEEeccc
Confidence 0000 0 123478899999986 999887643
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=150.14 Aligned_cols=170 Identities=16% Similarity=0.131 Sum_probs=123.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.+.++..++.+|||||||+|..+..+++.+ +..+++++|+ +.++. +++....+.. +
T Consensus 174 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-----------------p~~~~~~~D~-~~~~~--~~~~~~~~~~-~ 232 (348)
T 3lst_A 174 LILARAGDFPATGTVADVGGGRGGFLLTVLREH-----------------PGLQGVLLDR-AEVVA--RHRLDAPDVA-G 232 (348)
T ss_dssp HHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHC-----------------TTEEEEEEEC-HHHHT--TCCCCCGGGT-T
T ss_pred HHHHHhCCccCCceEEEECCccCHHHHHHHHHC-----------------CCCEEEEecC-HHHhh--cccccccCCC-C
Confidence 345666677778899999999999999999987 4688999999 44444 3333222333 5
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEeccCCCh--HHHHHHHHHhhcccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLELSHVDI--PVFKELYDYYSFSVI 228 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~--~~~~~~~~~~~~~~~ 228 (288)
++++..+|+. .+.+ +||+|++..++|++++. ..+|++++++|||||++++.+...+.. +......+....
T Consensus 233 ~v~~~~~d~~-~~~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~--- 306 (348)
T 3lst_A 233 RWKVVEGDFL-REVP--HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMML--- 306 (348)
T ss_dssp SEEEEECCTT-TCCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHH---
T ss_pred CeEEEecCCC-CCCC--CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhh---
Confidence 7999999986 3344 79999999999999877 689999999999999999988765532 111111111110
Q ss_pred ccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 229 PAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
.. .. .+..+.++|.++|+++||+++++.. ..+...++.+++
T Consensus 307 ---~~---~~-----------~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vie~~p 347 (348)
T 3lst_A 307 ---AA---RT-----------GQERTAAELEPLFTAAGLRLDRVVG-TSSVMSIAVGVP 347 (348)
T ss_dssp ---HT---TS-----------CCCCBHHHHHHHHHHTTEEEEEEEE-CSSSCEEEEEEE
T ss_pred ---hc---CC-----------CcCCCHHHHHHHHHHCCCceEEEEE-CCCCcEEEEEEe
Confidence 00 00 0134789999999999999999988 666677776665
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-17 Score=146.03 Aligned_cols=119 Identities=14% Similarity=0.137 Sum_probs=100.0
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc-CCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER-GYP 150 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~ 150 (288)
.+.+..... .++.+|||+|||+|..+..+++.+. +..+++++|+|+.+++.++++.... +..
T Consensus 26 ~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~----------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~ 88 (299)
T 3g5t_A 26 YKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELK----------------PFEQIIGSDLSATMIKTAEVIKEGSPDTY 88 (299)
T ss_dssp HHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSS----------------CCSEEEEEESCHHHHHHHHHHHHHCC-CC
T ss_pred HHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCC----------------CCCEEEEEeCCHHHHHHHHHHHHhccCCC
Confidence 344444433 4678999999999999999998642 3589999999999999999998775 222
Q ss_pred CCceEEEEcccccCCCCC------CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 151 DKSLLWVEGDAEALCFED------STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~------~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+++.++.+|+.++++++ ++||+|++..+++++ ++..+++++.++|+|||.+++.++.
T Consensus 89 -~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 89 -KNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp -TTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -CceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 68999999999887766 799999999999999 9999999999999999999985544
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-18 Score=143.33 Aligned_cols=118 Identities=15% Similarity=0.123 Sum_probs=97.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC-
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD- 151 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~- 151 (288)
+.+.+.+...++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++....++++
T Consensus 19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-----------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~ 81 (219)
T 3jwg_A 19 GTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDK-----------------SFEQITGVDVSYSVLERAKDRLKIDRLPEM 81 (219)
T ss_dssp HHHHHHHHHTTCCEEEEETCTTCHHHHHHHTST-----------------TCCEEEEEESCHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcC-----------------CCCEEEEEECCHHHHHHHHHHHHhhccccc
Confidence 344455544567899999999999999998875 34799999999999999999987655430
Q ss_pred --CceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEe
Q 036563 152 --KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 152 --~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.++.+..+|+...+.+.++||+|++..+++|+++. ..+++++.++|+|||.++...
T Consensus 82 ~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 82 QRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp HHTTEEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred cCcceEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 27999999997777767899999999999999865 789999999999999766543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-18 Score=146.96 Aligned_cols=137 Identities=21% Similarity=0.344 Sum_probs=99.6
Q ss_pred HHHhHhhHHHhhhhhhhhhhh--hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCC
Q 036563 47 NVFSSVAKNYDLMNDLMSGGL--HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEE 124 (288)
Q Consensus 47 ~~~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (288)
+.|+..+..|+.......... .-.+...++......++.+|||+|||+|.++..+++..
T Consensus 3 ~~y~~~a~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~------------------- 63 (252)
T 1wzn_A 3 ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG------------------- 63 (252)
T ss_dssp GGGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT-------------------
T ss_pred hHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCC-------------------
Confidence 346666677765432111111 11222334444555567899999999999999988762
Q ss_pred ceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccc-ccccc--CHHHHHHHHHhhccCCc
Q 036563 125 TRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFG-IRNVT--HIEKALAEAYRVLKRGG 201 (288)
Q Consensus 125 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~-l~~~~--~~~~~l~~~~~~L~pgG 201 (288)
.+++++|+|+.|++.++++....+ .++.+..+|+.+++++ ++||+|++... +++.. +...+++++.++|+|||
T Consensus 64 ~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG 139 (252)
T 1wzn_A 64 YEVVGLDLHEEMLRVARRKAKERN---LKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGG 139 (252)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTT---CCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcC---CceEEEECChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCe
Confidence 789999999999999999887665 3689999999887754 58999998643 34433 56789999999999999
Q ss_pred EEEEE
Q 036563 202 RFLCL 206 (288)
Q Consensus 202 ~l~i~ 206 (288)
.+++.
T Consensus 140 ~li~~ 144 (252)
T 1wzn_A 140 VFITD 144 (252)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99863
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-17 Score=136.51 Aligned_cols=142 Identities=24% Similarity=0.360 Sum_probs=108.6
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+|||+|||+|.++..++. . +++|+++.+++.++++ ++.+..+|+..
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~---------------------~--~~vD~s~~~~~~a~~~---------~~~~~~~d~~~ 95 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKI---------------------K--IGVEPSERMAEIARKR---------GVFVLKGTAEN 95 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTC---------------------C--EEEESCHHHHHHHHHT---------TCEEEECBTTB
T ss_pred CCcEEEeCCCCCHHHHHHHH---------------------H--hccCCCHHHHHHHHhc---------CCEEEEccccc
Confidence 67999999999999865421 2 9999999999998875 47889999988
Q ss_pred CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchh
Q 036563 164 LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQ 243 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (288)
+++++++||+|++..++++++++..+++++.++|+|||.+++.+..... . ......... .+... +
T Consensus 96 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-~-~~~~~~~~~------~~~~~------~- 160 (219)
T 1vlm_A 96 LPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRES-F-LGREYEKNK------EKSVF------Y- 160 (219)
T ss_dssp CCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSS-H-HHHHHHHTT------TC-CC------S-
T ss_pred CCCCCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCcc-H-HHHHHHHHh------cCcch------h-
Confidence 8877789999999999999999999999999999999999987665432 2 122211110 00000 0
Q ss_pred hhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 244 YLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
...++++.+++.++|+++||+++++....
T Consensus 161 ----~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 189 (219)
T 1vlm_A 161 ----KNARFFSTEELMDLMRKAGFEEFKVVQTL 189 (219)
T ss_dssp ----TTCCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred ----cccccCCHHHHHHHHHHCCCeEEEEeccc
Confidence 01235689999999999999999987653
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.8e-18 Score=141.29 Aligned_cols=149 Identities=14% Similarity=0.082 Sum_probs=110.7
Q ss_pred HhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC-------
Q 036563 76 VSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG------- 148 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~------- 148 (288)
+..+...++.+|||+|||+|..+..+++.. .+|+|+|+|+.|++.++++.....
T Consensus 15 ~~~l~~~~~~~vLD~GCG~G~~~~~la~~g-------------------~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~ 75 (203)
T 1pjz_A 15 WSSLNVVPGARVLVPLCGKSQDMSWLSGQG-------------------YHVVGAELSEAAVERYFTERGEQPHITSQGD 75 (203)
T ss_dssp HHHHCCCTTCEEEETTTCCSHHHHHHHHHC-------------------CEEEEEEECHHHHHHHHHHHCSCSEEEEETT
T ss_pred HHhcccCCCCEEEEeCCCCcHhHHHHHHCC-------------------CeEEEEeCCHHHHHHHHHHccCCcccccccc
Confidence 344555677899999999999999998862 799999999999999988754210
Q ss_pred ---CCCCceEEEEcccccCCCCC-CCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHH
Q 036563 149 ---YPDKSLLWVEGDAEALCFED-STMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDY 222 (288)
Q Consensus 149 ---~~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~ 222 (288)
....++++.++|+.++++.+ ++||+|++..++++++. ...++++++++|||||+++++....+..
T Consensus 76 ~~~~~~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~--------- 146 (203)
T 1pjz_A 76 FKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA--------- 146 (203)
T ss_dssp EEEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS---------
T ss_pred cccccCCccEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc---------
Confidence 00147999999999887654 68999999999988863 4568999999999999955543332210
Q ss_pred hhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 223 YSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
. ..+. . ...+.+++.+++++ ||+++.+...
T Consensus 147 ----------~-~~~~--~---------~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 147 ----------L-LEGP--P---------FSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp ----------S-SSSC--C---------CCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred ----------c-cCCC--C---------CCCCHHHHHHHhcC-CcEEEEeccc
Confidence 0 0000 0 12378899999998 9998877654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-17 Score=149.38 Aligned_cols=166 Identities=18% Similarity=0.188 Sum_probs=121.0
Q ss_pred HHHHhhcC-CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 73 DRLVSKLN-PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 73 ~~~~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
..++..++ ..+..+|||||||+|.++..+++.+ |..+++++|+ +.+++.+++.
T Consensus 192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-----------------p~~~~~~~D~-~~~~~~a~~~-------- 245 (368)
T 3reo_A 192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKY-----------------PSINAINFDL-PHVIQDAPAF-------- 245 (368)
T ss_dssp HHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHC-----------------TTCEEEEEEC-HHHHTTCCCC--------
T ss_pred HHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhC-----------------CCCEEEEEeh-HHHHHhhhhc--------
Confidence 34455554 5567899999999999999999987 5689999999 8887665431
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEeccCCChH---HHH---HHHHHh
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLELSHVDIP---VFK---ELYDYY 223 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~---~~~---~~~~~~ 223 (288)
++++++.+|+.+ +++.. |+|++..++|++++. .++|++++++|+|||++++.|...++.. ... ...+..
T Consensus 246 ~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~ 322 (368)
T 3reo_A 246 SGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDAL 322 (368)
T ss_dssp TTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHH
T ss_pred CCCEEEecCCCC-CCCCC--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHH
Confidence 589999999876 55643 999999999999764 4789999999999999999988765322 111 111111
Q ss_pred hccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 224 SFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
. +..... . +..+.++|+++|+++||+++++.....+.. ++.++|
T Consensus 323 ~------~~~~~~--g-----------~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~-vie~~k 366 (368)
T 3reo_A 323 M------LAYNPG--G-----------KERTEKEFQALAMASGFRGFKVASCAFNTY-VMEFLK 366 (368)
T ss_dssp H------HHHSSB--C-----------CCCCHHHHHHHHHHTTCCEEEEEEEETTEE-EEEEEC
T ss_pred H------HhhcCC--C-----------ccCCHHHHHHHHHHCCCeeeEEEEeCCCcE-EEEEEe
Confidence 1 000000 0 133789999999999999999998877655 444444
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=144.35 Aligned_cols=164 Identities=13% Similarity=0.058 Sum_probs=113.3
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC---------
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP--------- 150 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~--------- 150 (288)
+..++.+|||||||+|.++..++... ..+|+++|+|+.|++.+++++......
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~------------------~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~ 113 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDS------------------FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKF 113 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGT------------------EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhh------------------hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHH
Confidence 44567899999999998776555442 247999999999999998876432100
Q ss_pred ------------------CCceE-EEEcccccC-CC---CCCCeeEEEeccccccc----cCHHHHHHHHHhhccCCcEE
Q 036563 151 ------------------DKSLL-WVEGDAEAL-CF---EDSTMDGYTIAFGIRNV----THIEKALAEAYRVLKRGGRF 203 (288)
Q Consensus 151 ------------------~~~v~-~~~~d~~~~-~~---~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l 203 (288)
..++. +..+|+.+. ++ ..++||+|++++++|++ ++...++++++++|||||.|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~l 193 (263)
T 2a14_A 114 ACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHL 193 (263)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEE
T ss_pred HHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEE
Confidence 01233 888998773 32 25689999999999985 35578999999999999999
Q ss_pred EEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC------
Q 036563 204 LCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG------ 277 (288)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~------ 277 (288)
++.+....... . .+ ... +. ...++.+++.++|+++||+++++.....
T Consensus 194 i~~~~~~~~~~---------~------~g-----~~~-~~------~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~ 246 (263)
T 2a14_A 194 VTTVTLRLPSY---------M------VG-----KRE-FS------CVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTN 246 (263)
T ss_dssp EEEEESSCCEE---------E------ET-----TEE-EE------CCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTT
T ss_pred EEEEeecCccc---------e------eC-----CeE-ee------ccccCHHHHHHHHHHCCCEEEEEeeccccccccc
Confidence 98754321100 0 00 000 00 1145889999999999999999887531
Q ss_pred ---CeeEEEEeeeC
Q 036563 278 ---GVVAIHSGLKI 288 (288)
Q Consensus 278 ---~~~~~~~~~k~ 288 (288)
..+-+++++|+
T Consensus 247 ~~~~~~~~~~a~K~ 260 (263)
T 2a14_A 247 AANNGVCCIVARKK 260 (263)
T ss_dssp CCCCCEEEEEEEEC
T ss_pred CCCCceEEEEEEec
Confidence 13445666764
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.2e-17 Score=135.95 Aligned_cols=163 Identities=17% Similarity=0.199 Sum_probs=119.1
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.+.+. .++.+|||+|||+|.++..+++. + .+++++|+++.+++.++++.
T Consensus 23 ~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~-~------------------~~~~~~D~~~~~~~~~~~~~-------- 74 (230)
T 3cc8_A 23 PNLLKHIK-KEWKEVLDIGCSSGALGAAIKEN-G------------------TRVSGIEAFPEAAEQAKEKL-------- 74 (230)
T ss_dssp HHHHTTCC-TTCSEEEEETCTTSHHHHHHHTT-T------------------CEEEEEESSHHHHHHHHTTS--------
T ss_pred HHHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc-C------------------CeEEEEeCCHHHHHHHHHhC--------
Confidence 34555555 56789999999999999988876 3 79999999999999887642
Q ss_pred ceEEEEccccc--CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccc
Q 036563 153 SLLWVEGDAEA--LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPA 230 (288)
Q Consensus 153 ~v~~~~~d~~~--~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (288)
..+..+|+.. .++++++||+|++..+++|++++..+++++.++|+|||.+++.............. .. .....
T Consensus 75 -~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~---~~-~~~~~ 149 (230)
T 3cc8_A 75 -DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPL---LA-GNWTY 149 (230)
T ss_dssp -SEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHH---HT-TCCCC
T ss_pred -CcEEEcchhhcCCCCCCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHH---hc-CCcee
Confidence 3678888876 45667889999999999999999999999999999999999876554433222221 11 00000
Q ss_pred ccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC
Q 036563 231 IGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277 (288)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 277 (288)
. ... .......++++.+++.++|+++||++++......
T Consensus 150 ~------~~~---~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 187 (230)
T 3cc8_A 150 T------EYG---LLDKTHIRFFTFNEMLRMFLKAGYSISKVDRVYV 187 (230)
T ss_dssp B------SSS---TTBTTCCCCCCHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred c------cCC---CCCcceEEEecHHHHHHHHHHcCCeEEEEEeccc
Confidence 0 000 0000112356899999999999999999887643
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-17 Score=136.88 Aligned_cols=165 Identities=21% Similarity=0.221 Sum_probs=119.1
Q ss_pred hHHHHHHHhHhhHHHhhhhhhhhhhh---hHHHHHHHHhhcC-CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhccc
Q 036563 42 SQLVSNVFSSVAKNYDLMNDLMSGGL---HRLWKDRLVSKLN-PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVL 117 (288)
Q Consensus 42 ~~~~~~~~~~~~~~y~~~~~~~~~~~---~~~~~~~~~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~ 117 (288)
.....++|+..+..|+.....+.... .....+.+...+. ..++.+|||+|||+|.++..+ .
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l----~----------- 86 (215)
T 2zfu_A 22 SSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSI----R----------- 86 (215)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHHHHC----C-----------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHHHHh----h-----------
Confidence 34556777777777876543332110 0001112333332 356679999999999987655 1
Q ss_pred ccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhc
Q 036563 118 EDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVL 197 (288)
Q Consensus 118 ~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L 197 (288)
.+++++|+++. ++.+..+|+..+++++++||+|++..++|+ .++..+++++.++|
T Consensus 87 -------~~v~~~D~s~~-----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~~~~l~~~~~~L 141 (215)
T 2zfu_A 87 -------NPVHCFDLASL-----------------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG-TNIRDFLEEANRVL 141 (215)
T ss_dssp -------SCEEEEESSCS-----------------STTEEESCTTSCSCCTTCEEEEEEESCCCS-SCHHHHHHHHHHHE
T ss_pred -------ccEEEEeCCCC-----------------CceEEEeccccCCCCCCCEeEEEEehhccc-cCHHHHHHHHHHhC
Confidence 57999999986 256788999888888889999999999974 88999999999999
Q ss_pred cCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC
Q 036563 198 KRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277 (288)
Q Consensus 198 ~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 277 (288)
+|||.+++.+.... +.+.+++.++|+++||+++.... ..
T Consensus 142 ~~gG~l~i~~~~~~----------------------------------------~~~~~~~~~~l~~~Gf~~~~~~~-~~ 180 (215)
T 2zfu_A 142 KPGGLLKVAEVSSR----------------------------------------FEDVRTFLRAVTKLGFKIVSKDL-TN 180 (215)
T ss_dssp EEEEEEEEEECGGG----------------------------------------CSCHHHHHHHHHHTTEEEEEEEC-CS
T ss_pred CCCeEEEEEEcCCC----------------------------------------CCCHHHHHHHHHHCCCEEEEEec-CC
Confidence 99999998764321 22678999999999999888544 45
Q ss_pred CeeEEEEeee
Q 036563 278 GVVAIHSGLK 287 (288)
Q Consensus 278 ~~~~~~~~~k 287 (288)
+.+.++.++|
T Consensus 181 ~~~~~~~~~k 190 (215)
T 2zfu_A 181 SHFFLFDFQK 190 (215)
T ss_dssp TTCEEEEEEE
T ss_pred CeEEEEEEEe
Confidence 5556666665
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-18 Score=160.99 Aligned_cols=173 Identities=12% Similarity=0.131 Sum_probs=124.7
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+.+.+.+.+.+...++.+|||||||+|.++..+++.. .+++++|+|+.+++.++++ +
T Consensus 93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g-------------------~~v~gvD~s~~~~~~a~~~----~ 149 (416)
T 4e2x_A 93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAG-------------------VRHLGFEPSSGVAAKAREK----G 149 (416)
T ss_dssp HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTT-------------------CEEEEECCCHHHHHHHHTT----T
T ss_pred HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcC-------------------CcEEEECCCHHHHHHHHHc----C
Confidence 3444667777777788899999999999999998763 6999999999999998875 2
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccc
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVI 228 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 228 (288)
.+.....+...+...+++++++||+|++.++++|++++..++++++++|+|||.+++..... ........
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~------~~~~~~~~---- 219 (416)
T 4e2x_A 150 IRVRTDFFEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYL------GDIVAKTS---- 219 (416)
T ss_dssp CCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECH------HHHHHHTC----
T ss_pred CCcceeeechhhHhhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCCh------HHhhhhcc----
Confidence 21001112233444455667889999999999999999999999999999999999754322 11111111
Q ss_pred ccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee--CCeeEEEEeee
Q 036563 229 PAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV--GGVVAIHSGLK 287 (288)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~--~~~~~~~~~~k 287 (288)
+..... ....+++.+++.++++++||++++...+. +|...++..++
T Consensus 220 --~~~~~~-----------~~~~~~s~~~l~~ll~~aGf~~~~~~~~~~~~g~l~~~~~~~ 267 (416)
T 4e2x_A 220 --FDQIFD-----------EHFFLFSATSVQGMAQRCGFELVDVQRLPVHGGEVRYTLARQ 267 (416)
T ss_dssp --GGGCST-----------TCCEECCHHHHHHHHHHTTEEEEEEEEECGGGSEEEEEEEET
T ss_pred --hhhhhh-----------hhhhcCCHHHHHHHHHHcCCEEEEEEEccCCCCEEEEEEEeC
Confidence 001000 01124589999999999999999998865 78877777654
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-17 Score=147.77 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=121.0
Q ss_pred HHHHhhcC-CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 73 DRLVSKLN-PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 73 ~~~~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
..++..++ ..+..+|||||||+|.++..+++.+ |..+++++|+ +.+++.+++.
T Consensus 190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-----------------p~~~~~~~D~-~~~~~~a~~~-------- 243 (364)
T 3p9c_A 190 KKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHY-----------------PTIKGVNFDL-PHVISEAPQF-------- 243 (364)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-----------------TTCEEEEEEC-HHHHTTCCCC--------
T ss_pred HHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHC-----------------CCCeEEEecC-HHHHHhhhhc--------
Confidence 34555555 5667899999999999999999987 5689999999 8887665431
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCChH---HHH---HHHHHh
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIP---VFK---ELYDYY 223 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~---~~~---~~~~~~ 223 (288)
++++++.+|+.+ +++.. |+|++.+++|++++ ..++|+++++.|+|||++++.|...++.. ... ...+..
T Consensus 244 ~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~ 320 (364)
T 3p9c_A 244 PGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMI 320 (364)
T ss_dssp TTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHH
T ss_pred CCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHH
Confidence 589999999987 66653 99999999999965 45899999999999999999998765421 111 111111
Q ss_pred hccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 224 SFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
. + ....+ . +..+.++|+++|+++||+++++.....+.. ++.++|
T Consensus 321 m------~-~~~~~-g-----------~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~-vie~~k 364 (364)
T 3p9c_A 321 M------L-AHNPG-G-----------RERYEREFQALARGAGFTGVKSTYIYANAW-AIEFTK 364 (364)
T ss_dssp H------H-HHCSS-C-----------CCCBHHHHHHHHHHTTCCEEEEEEEETTEE-EEEEEC
T ss_pred H------H-hcccC-C-----------ccCCHHHHHHHHHHCCCceEEEEEcCCceE-EEEEeC
Confidence 0 0 00000 0 123789999999999999999998866543 444443
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=144.90 Aligned_cols=121 Identities=18% Similarity=0.149 Sum_probs=99.2
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..+.+.+...+...++.+|||+|||+|.++..+++.. .+++++|+|+.|++.++++.....
T Consensus 43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-------------------~~v~gvD~s~~~l~~a~~~~~~~~ 103 (293)
T 3thr_A 43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG-------------------FSVTSVDASDKMLKYALKERWNRR 103 (293)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTT-------------------CEEEEEESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCC-------------------CeEEEEECCHHHHHHHHHhhhhcc
Confidence 4455666666665677899999999999999998873 699999999999999988763322
Q ss_pred CC--CCceEEEEcccccCC---CCCCCeeEEEec-cccccccC-------HHHHHHHHHhhccCCcEEEEEec
Q 036563 149 YP--DKSLLWVEGDAEALC---FEDSTMDGYTIA-FGIRNVTH-------IEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 149 ~~--~~~v~~~~~d~~~~~---~~~~~~D~v~~~-~~l~~~~~-------~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.. ..++.+..+|+..++ +++++||+|++. .+++|+.+ ...+++++.++|+|||++++...
T Consensus 104 ~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 104 KEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp TSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 11 136788899988876 677899999998 89999998 89999999999999999997543
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-17 Score=148.01 Aligned_cols=166 Identities=17% Similarity=0.192 Sum_probs=122.6
Q ss_pred HHHHhhcC-CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 73 DRLVSKLN-PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 73 ~~~~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
+.++..++ ..++.+|||||||+|.++..+++.. +..+++++|+ +.+++.+++.
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-----------------~~~~~~~~D~-~~~~~~a~~~-------- 251 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKY-----------------PLIKGINFDL-PQVIENAPPL-------- 251 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-----------------TTCEEEEEEC-HHHHTTCCCC--------
T ss_pred HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHC-----------------CCCeEEEeCh-HHHHHhhhhc--------
Confidence 34555554 4567899999999999999999987 4678999999 8888766531
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHH--HHHHHHHhhccCCcEEEEEeccCCChHH------HHHHHHHh
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIE--KALAEAYRVLKRGGRFLCLELSHVDIPV------FKELYDYY 223 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~------~~~~~~~~ 223 (288)
++++++.+|+.. +++. ||+|++..++|++++.. .+|++++++|+|||++++.+...+.... .....+..
T Consensus 252 ~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~ 328 (372)
T 1fp1_D 252 SGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNL 328 (372)
T ss_dssp TTEEEEECCTTT-CCCC--EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHH
T ss_pred CCCEEEeCCccc-CCCC--CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHH
Confidence 479999999977 5554 99999999999998876 8999999999999999998876543211 11111111
Q ss_pred hccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 224 SFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
... ..+ .+..+.++|.++|+++||+++++.....|.+.++.++|
T Consensus 329 ~~~--------~~~------------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 329 MFI--------TVG------------GRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHH--------HHS------------CCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HHh--------ccC------------CccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 000 000 01237899999999999999999887666236666554
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-17 Score=144.46 Aligned_cols=185 Identities=18% Similarity=0.233 Sum_probs=120.4
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+.++..+...+ .+|||+|||+|.++..+++.. .+++++|+++.+++.++++....+..
T Consensus 71 ~~~~~~~~~~~~~-~~vLDlGcG~G~~~~~l~~~~-------------------~~v~gvD~s~~~~~~a~~~~~~~~~~ 130 (299)
T 3g2m_A 71 EAREFATRTGPVS-GPVLELAAGMGRLTFPFLDLG-------------------WEVTALELSTSVLAAFRKRLAEAPAD 130 (299)
T ss_dssp HHHHHHHHHCCCC-SCEEEETCTTTTTHHHHHTTT-------------------CCEEEEESCHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHhhCCCC-CcEEEEeccCCHHHHHHHHcC-------------------CeEEEEECCHHHHHHHHHHHhhcccc
Confidence 3345566666544 499999999999999998873 78999999999999999998765320
Q ss_pred -CCceEEEEcccccCCCCCCCeeEEEec-ccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChH--------HHHH
Q 036563 151 -DKSLLWVEGDAEALCFEDSTMDGYTIA-FGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIP--------VFKE 218 (288)
Q Consensus 151 -~~~v~~~~~d~~~~~~~~~~~D~v~~~-~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~--------~~~~ 218 (288)
..++.++.+|+.++++ +++||+|++. .++++++ +...+|+++.++|+|||.+++......... .+..
T Consensus 131 ~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~ 209 (299)
T 3g2m_A 131 VRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPG 209 (299)
T ss_dssp HHTTEEEEECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC------
T ss_pred cccceEEEeCchhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeec
Confidence 0269999999998876 5789999975 5566665 357899999999999999998765543110 0000
Q ss_pred HHHH-hhcc--ccc-----cccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 219 LYDY-YSFS--VIP-----AIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 219 ~~~~-~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
.... +... ..+ .+...................++++.++++++|+++||+++++..+.
T Consensus 210 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 210 RSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp -------CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CCCcEEEEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 0000 0000 000 00000000000000000111235699999999999999999999886
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8e-17 Score=145.40 Aligned_cols=156 Identities=20% Similarity=0.247 Sum_probs=117.3
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. +++++..+|
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~-----------------p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d 239 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETF-----------------PKLKCIVFDR-PQVVENLSGS--------NNLTYVGGD 239 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHC-----------------TTCEEEEEEC-HHHHTTCCCB--------TTEEEEECC
T ss_pred cccCceEEEeCCCccHHHHHHHHHC-----------------CCCeEEEeeC-HHHHhhcccC--------CCcEEEecc
Confidence 3456799999999999999999987 4679999999 9888766531 469999999
Q ss_pred cccCCCCCCCeeEEEeccccccccCHH--HHHHHHHhhccC---CcEEEEEeccCCChHH------HHHHHHHhhccccc
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVTHIE--KALAEAYRVLKR---GGRFLCLELSHVDIPV------FKELYDYYSFSVIP 229 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~L~p---gG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~ 229 (288)
+.. +++. ||+|++.+++|++++.. .+|++++++|+| ||++++.+...++... .....+...
T Consensus 240 ~~~-~~p~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~----- 311 (352)
T 1fp2_A 240 MFT-SIPN--ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNM----- 311 (352)
T ss_dssp TTT-CCCC--CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHG-----
T ss_pred ccC-CCCC--ccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHH-----
Confidence 865 4443 99999999999998876 899999999999 9999998887654321 111111111
Q ss_pred cccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 230 AIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
+. .. . +..+.++|.++|+++||+++++... .+...++.++|
T Consensus 312 -~~--~~--g-----------~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~~ 352 (352)
T 1fp2_A 312 -AC--LN--G-----------KERNEEEWKKLFIEAGFQHYKISPL-TGFLSLIEIYP 352 (352)
T ss_dssp -GG--GT--C-----------CCEEHHHHHHHHHHTTCCEEEEEEE-ETTEEEEEEEC
T ss_pred -Hh--cc--C-----------CCCCHHHHHHHHHHCCCCeeEEEec-CCCcEEEEEeC
Confidence 00 00 0 1237899999999999999999884 45566666553
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-17 Score=142.52 Aligned_cols=149 Identities=13% Similarity=0.123 Sum_probs=104.9
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC-------------
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY------------- 149 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~------------- 149 (288)
++.+|||||||+|.....++.. ...+|+++|+|+.|++.+++++.....
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~------------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~ 132 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACS------------------HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACL 132 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGG------------------GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhcc------------------CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHH
Confidence 6789999999999954333332 247999999999999999886542100
Q ss_pred ----C-----------CCceEEEEccccc-CC-----CCCCCeeEEEecccccc----ccCHHHHHHHHHhhccCCcEEE
Q 036563 150 ----P-----------DKSLLWVEGDAEA-LC-----FEDSTMDGYTIAFGIRN----VTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 150 ----~-----------~~~v~~~~~d~~~-~~-----~~~~~~D~v~~~~~l~~----~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
. ...+.++.+|+.. .+ +++++||+|+++.++++ .+++..+|+++.++|||||+|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~ 212 (289)
T 2g72_A 133 IEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL 212 (289)
T ss_dssp HHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred hcCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 0 0014567778877 44 33467999999999998 5678899999999999999999
Q ss_pred EEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 205 CLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 205 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
+.+...... +. . ... .+ ...+++.+++.++|+++||+++++..+.
T Consensus 213 ~~~~~~~~~---------~~------~-----~~~-~~------~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 213 LIGALEESW---------YL------A-----GEA-RL------TVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp EEEEESCCE---------EE------E-----TTE-EE------ECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred EEEecCcce---------EE------c-----CCe-ee------eeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 864221100 00 0 000 00 0125689999999999999999988765
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-16 Score=131.16 Aligned_cols=116 Identities=18% Similarity=0.132 Sum_probs=98.0
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
..+..++..+...++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++....++
T Consensus 27 ~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~-----------------~~~~v~~vD~s~~~~~~a~~~~~~~~~ 89 (204)
T 3e05_A 27 EVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLM-----------------PNGRIFALERNPQYLGFIRDNLKKFVA 89 (204)
T ss_dssp HHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHC-----------------TTSEEEEEECCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHC-----------------CCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 344556677777888999999999999999999886 468999999999999999999887776
Q ss_pred CCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 150 PDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+++.+..+|+.+.....++||+|++...++ +...+++++.++|+|||.+++..
T Consensus 90 --~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 142 (204)
T 3e05_A 90 --RNVTLVEAFAPEGLDDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNA 142 (204)
T ss_dssp --TTEEEEECCTTTTCTTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred --CcEEEEeCChhhhhhcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEe
Confidence 489999999865533336799999988765 78899999999999999999754
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-17 Score=136.01 Aligned_cols=115 Identities=15% Similarity=0.210 Sum_probs=98.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.+.+.+...+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....
T Consensus 38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-------------------~~v~~vD~s~~~~~~a~~~~~~~-- 96 (216)
T 3ofk_A 38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC-------------------KRLTVIDVMPRAIGRACQRTKRW-- 96 (216)
T ss_dssp HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE-------------------EEEEEEESCHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC-------------------CEEEEEECCHHHHHHHHHhcccC--
Confidence 344455556677778899999999999999988764 79999999999999999987664
Q ss_pred CCCceEEEEcccccCCCCCCCeeEEEeccccccccCH---HHHHHHHHhhccCCcEEEEEec
Q 036563 150 PDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI---EKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+++.+..+|+.+++ ++++||+|++..+++|++++ ..+++++.++|+|||.+++...
T Consensus 97 --~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 97 --SHISWAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp --SSEEEEECCTTTCC-CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred --CCeEEEEcchhhCC-CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 47999999998887 56789999999999999987 5679999999999999997554
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-16 Score=133.47 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=105.5
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|..+..++... +..+++++|+++.|++.++++....+++ +++++.+|+
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~-----------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~ 129 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICF-----------------PHLHVTIVDSLNKRITFLEKLSEALQLE--NTTFCHDRA 129 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHC-----------------TTCEEEEEESCHHHHHHHHHHHHHHTCS--SEEEEESCH
T ss_pred CCCCEEEEecCCCCHHHHHHHHhC-----------------CCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEeccH
Confidence 457799999999999999998754 4589999999999999999998887764 699999999
Q ss_pred ccCCCC---CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCC
Q 036563 162 EALCFE---DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGD 238 (288)
Q Consensus 162 ~~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (288)
.++++. .++||+|++.. +.+...+++.+.++|+|||.+++...... ..
T Consensus 130 ~~~~~~~~~~~~fD~V~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~-~~------------------------ 180 (240)
T 1xdz_A 130 ETFGQRKDVRESYDIVTARA----VARLSVLSELCLPLVKKNGLFVALKAASA-EE------------------------ 180 (240)
T ss_dssp HHHTTCTTTTTCEEEEEEEC----CSCHHHHHHHHGGGEEEEEEEEEEECC-C-HH------------------------
T ss_pred HHhcccccccCCccEEEEec----cCCHHHHHHHHHHhcCCCCEEEEEeCCCc-hH------------------------
Confidence 877643 56899999866 36788999999999999999987421110 00
Q ss_pred CcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 239 RGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
..+++.+.++++||++++...+.
T Consensus 181 ---------------~~~~~~~~l~~~g~~~~~~~~~~ 203 (240)
T 1xdz_A 181 ---------------ELNAGKKAITTLGGELENIHSFK 203 (240)
T ss_dssp ---------------HHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ---------------HHHHHHHHHHHcCCeEeEEEEEe
Confidence 12456778999999998877653
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=137.32 Aligned_cols=155 Identities=23% Similarity=0.182 Sum_probs=114.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|..+..++... +.+++++|+|+.+++.++++....+ .++.+..+|+
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~------------------~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~ 80 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVED------------------GYKTYGIEISDLQLKKAENFSRENN---FKLNISKGDI 80 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHT------------------TCEEEEEECCHHHHHHHHHHHHHHT---CCCCEEECCT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhC------------------CCEEEEEECCHHHHHHHHHHHHhcC---CceEEEECch
Confidence 456799999999999855554442 4799999999999999999877654 4689999999
Q ss_pred ccCCCCCCCeeEEEeccccccc--cCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCC
Q 036563 162 EALCFEDSTMDGYTIAFGIRNV--THIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDR 239 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (288)
..+++++++||+|++..+++|+ .+...+++++.++|+|||.+++.+++.++..... . .+ +..
T Consensus 81 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--------~-~~-~~~------ 144 (209)
T 2p8j_A 81 RKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNK--------G-EK-IGE------ 144 (209)
T ss_dssp TSCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTC--------S-EE-EET------
T ss_pred hhCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccc--------h-hh-hcc------
Confidence 9888878899999999999998 5778999999999999999999877654322100 0 00 000
Q ss_pred cchhhhH---HHHhcCCChHHHHHHHHHcCCcEEEEE
Q 036563 240 GSYQYLV---ESVRRFPPQEKFAAMISDAGFQKVEYE 273 (288)
Q Consensus 240 ~~~~~~~---~~~~~~~~~~~~~~~l~~aGf~~v~~~ 273 (288)
..|.... ....++++.+++.++|+++||...+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~~ 181 (209)
T 2p8j_A 145 GEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDR 181 (209)
T ss_dssp TEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEEEE
T ss_pred ccceeccCCCceeEEecCHHHHHHHHhhcCceeeeee
Confidence 0000000 001235688999999999999776554
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.8e-17 Score=138.34 Aligned_cols=164 Identities=16% Similarity=0.146 Sum_probs=118.0
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC---------
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP--------- 150 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~--------- 150 (288)
+..++.+|||+|||+|.++..++... ..+++++|+|+.|++.++++....+..
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~------------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 114 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACES------------------FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTY 114 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGT------------------EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcc------------------cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhh
Confidence 44567799999999999988777653 148999999999999999887543200
Q ss_pred ------------------CCce-EEEEcccccCC-CCC---CCeeEEEeccccc----cccCHHHHHHHHHhhccCCcEE
Q 036563 151 ------------------DKSL-LWVEGDAEALC-FED---STMDGYTIAFGIR----NVTHIEKALAEAYRVLKRGGRF 203 (288)
Q Consensus 151 ------------------~~~v-~~~~~d~~~~~-~~~---~~~D~v~~~~~l~----~~~~~~~~l~~~~~~L~pgG~l 203 (288)
..++ .+..+|+.+.. +++ ++||+|++..+++ +..+...+++++.++|+|||.+
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l 194 (265)
T 2i62_A 115 VCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFL 194 (265)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEE
T ss_pred hhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEE
Confidence 0027 89999988764 244 7899999999999 5567889999999999999999
Q ss_pred EEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC------
Q 036563 204 LCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG------ 277 (288)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~------ 277 (288)
++.+..... .+. .+ ....+ ...++.+++.++|+++||+++++.....
T Consensus 195 i~~~~~~~~---------~~~------~~-----~~~~~-------~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~ 247 (265)
T 2i62_A 195 VMVDALKSS---------YYM------IG-----EQKFS-------SLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTT 247 (265)
T ss_dssp EEEEESSCC---------EEE------ET-----TEEEE-------CCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTT
T ss_pred EEEecCCCc---------eEE------cC-----Ccccc-------ccccCHHHHHHHHHHCCCEEEEEEEecccCCccc
Confidence 987643221 000 00 00000 1245788999999999999999887652
Q ss_pred ---CeeEEEEeeeC
Q 036563 278 ---GVVAIHSGLKI 288 (288)
Q Consensus 278 ---~~~~~~~~~k~ 288 (288)
..+.+++++|+
T Consensus 248 ~~~~~~~~~~a~K~ 261 (265)
T 2i62_A 248 SNNEGLFSLVGRKP 261 (265)
T ss_dssp BCCCCEEEEEEECC
T ss_pred cccceEEEEEeccc
Confidence 13445566664
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=129.60 Aligned_cols=141 Identities=19% Similarity=0.129 Sum_probs=112.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++. +++.+..+|+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~-------------------~~v~~~D~~~~~~~~a~~~~-------~~~~~~~~d~ 98 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQG-------------------HDVLGTDLDPILIDYAKQDF-------PEARWVVGDL 98 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTT-------------------CEEEEEESCHHHHHHHHHHC-------TTSEEEECCT
T ss_pred cCCCeEEEECCCCCHHHHHHHHCC-------------------CcEEEEcCCHHHHHHHHHhC-------CCCcEEEccc
Confidence 467899999999999999888862 79999999999999998875 3688999999
Q ss_pred ccCCCCCCCeeEEEec-ccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCC
Q 036563 162 EALCFEDSTMDGYTIA-FGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGD 238 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~-~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (288)
...++++++||+|++. .++++.. +...+++++.++|+|||.+++......
T Consensus 99 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~--------------------------- 151 (195)
T 3cgg_A 99 SVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR--------------------------- 151 (195)
T ss_dssp TTSCCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS---------------------------
T ss_pred ccCCCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC---------------------------
Confidence 8887777889999998 6777774 457899999999999999997542211
Q ss_pred CcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee-------CCeeEEEEeeeC
Q 036563 239 RGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV-------GGVVAIHSGLKI 288 (288)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~-------~~~~~~~~~~k~ 288 (288)
..+.+++.++++++||++++..... ....-+++++|+
T Consensus 152 -------------~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 152 -------------GWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp -------------SCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred -------------CcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 1267899999999999998875431 233445555553
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=137.00 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=116.1
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..++.+|||+|||+|.++..+++.. .+++++|+|+.+++.++++... .++.++.+|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~-------------------~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~d 109 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFF-------------------PRVIGLDVSKSALEIAAKENTA-----ANISYRLLD 109 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHS-------------------SCEEEEESCHHHHHHHHHHSCC-----TTEEEEECC
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhC-------------------CCEEEEECCHHHHHHHHHhCcc-----cCceEEECc
Confidence 3567899999999999999998875 4899999999999999987632 479999999
Q ss_pred cccCCCCC-----CCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccc
Q 036563 161 AEALCFED-----STMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGE 233 (288)
Q Consensus 161 ~~~~~~~~-----~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (288)
+.+++... ..||+|++..++++++ +...+++++.++|+|||++++.++..+....+.......... ......
T Consensus 110 ~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 188 (245)
T 3ggd_A 110 GLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQL-PYELLL 188 (245)
T ss_dssp TTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSC-CHHHHH
T ss_pred ccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCC-chhhhh
Confidence 98754321 2489999999999998 789999999999999999999988876655444433321100 000000
Q ss_pred cccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 234 LVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
...... ....++.+++.++| +||++++....
T Consensus 189 ~~~~~~---------~~~~~~~~~~~~~~--aGf~~~~~~~~ 219 (245)
T 3ggd_A 189 VMEHGI---------RPGIFTAEDIELYF--PDFEILSQGEG 219 (245)
T ss_dssp HHTTTC---------CCCCCCHHHHHHHC--TTEEEEEEECC
T ss_pred ccccCC---------CCCccCHHHHHHHh--CCCEEEecccc
Confidence 000000 00134789999999 99999887543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-17 Score=144.01 Aligned_cols=154 Identities=15% Similarity=0.209 Sum_probs=107.7
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC------------
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP------------ 150 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------------ 150 (288)
++.+|||||||+|.++..+++.+ +..+++++|+++.+++.|++++...+..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~-----------------~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~ 108 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKW-----------------GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGD 108 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHT-----------------CCSEEEEEESCHHHHHHHHHTC------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHc-----------------CCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccc
Confidence 57899999999999999999987 3579999999999999999886543211
Q ss_pred --------------------------------------------CCceEEEEcccccCC-----CCCCCeeEEEeccccc
Q 036563 151 --------------------------------------------DKSLLWVEGDAEALC-----FEDSTMDGYTIAFGIR 181 (288)
Q Consensus 151 --------------------------------------------~~~v~~~~~d~~~~~-----~~~~~~D~v~~~~~l~ 181 (288)
..++.+..+|+.... +..++||+|+|..+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~ 188 (292)
T 3g07_A 109 PGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTK 188 (292)
T ss_dssp ---------------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHH
T ss_pred cccccccccccccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHH
Confidence 047999999987543 4567899999999987
Q ss_pred ccc------CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHH-hcCCC
Q 036563 182 NVT------HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESV-RRFPP 254 (288)
Q Consensus 182 ~~~------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 254 (288)
++. +...++++++++|+|||+|++.... ..... .. ..+. ..+.+.. ..-+.
T Consensus 189 ~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~---~~~y~---~~------~~~~----------~~~~~~~~~~~~~ 246 (292)
T 3g07_A 189 WVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQP---WSSYG---KR------KTLT----------ETIYKNYYRIQLK 246 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCC---HHHHH---TT------TTSC----------HHHHHHHHHCCCC
T ss_pred HhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCC---chhhh---hh------hccc----------HHHHhhhhcEEEc
Confidence 664 6788999999999999999874211 11000 00 0000 0000111 11235
Q ss_pred hHHHHHHHHH--cCCcEEEEEEe
Q 036563 255 QEKFAAMISD--AGFQKVEYENL 275 (288)
Q Consensus 255 ~~~~~~~l~~--aGf~~v~~~~~ 275 (288)
++++.++|.+ +||+.+++...
T Consensus 247 p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 247 PEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp GGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHHHHHhcCCCceEEEEecc
Confidence 7899999999 99988877544
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-16 Score=135.38 Aligned_cols=160 Identities=15% Similarity=0.110 Sum_probs=114.3
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecCCc---cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHh
Q 036563 69 RLWKDRLVSKLN-PFPGMKHLDVAGGT---GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRA 144 (288)
Q Consensus 69 ~~~~~~~~~~l~-~~~~~~vLDiG~G~---G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~ 144 (288)
+.+.+.+++.+. .....+|||||||+ |.++..+.+.. ++.+|+++|+|+.|++.+++++
T Consensus 62 ~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~-----------------p~~~v~~vD~sp~~l~~Ar~~~ 124 (274)
T 2qe6_A 62 RKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVN-----------------PDARVVYVDIDPMVLTHGRALL 124 (274)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHC-----------------TTCEEEEEESSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhC-----------------CCCEEEEEECChHHHHHHHHhc
Confidence 344445555554 33446999999999 98877666654 4689999999999999999987
Q ss_pred hhcCCCCCceEEEEcccccCC-----------CCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 145 LERGYPDKSLLWVEGDAEALC-----------FEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 145 ~~~~~~~~~v~~~~~d~~~~~-----------~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
... +++.++.+|+.+.. ++.++||+|++..++|++++ +..+|++++++|+|||+|++.+....
T Consensus 125 ~~~----~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~ 200 (274)
T 2qe6_A 125 AKD----PNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDT 200 (274)
T ss_dssp TTC----TTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred CCC----CCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence 542 58999999986531 22247999999999999986 78999999999999999999887653
Q ss_pred ChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEE
Q 036563 212 DIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVE 271 (288)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 271 (288)
...........+.. .+. ..++.+.+++..+| .||++++
T Consensus 201 ~~~~~~~~~~~~~~-----~~~---------------~~~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 201 GLPAQQKLARITRE-----NLG---------------EGWARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp SCHHHHHHHHHHHH-----HHS---------------CCCCBCHHHHHHTT--TTCEECT
T ss_pred chHHHHHHHHHHHh-----cCC---------------CCccCCHHHHHHHh--CCCeEcc
Confidence 21122222221110 000 01245889999999 5998775
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-16 Score=136.42 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=122.9
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+.+.+.+...+. .++.+|||+|||+|.++..++... +..+++++|+|+.+++.++++....+
T Consensus 96 e~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~-----------------~~~~v~~vD~s~~~l~~a~~n~~~~~ 157 (276)
T 2b3t_A 96 ECLVEQALARLP-EQPCRILDLGTGTGAIALALASER-----------------PDCEIIAVDRMPDAVSLAQRNAQHLA 157 (276)
T ss_dssp HHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHC-----------------TTSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 344455666665 556799999999999999999876 45899999999999999999988777
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEecccccc-------------c------------cCHHHHHHHHHhhccCCcEE
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN-------------V------------THIEKALAEAYRVLKRGGRF 203 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~-------------~------------~~~~~~l~~~~~~L~pgG~l 203 (288)
++ ++.+..+|+... ++.++||+|+++..+.. . .....+++++.++|+|||.+
T Consensus 158 ~~--~v~~~~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l 234 (276)
T 2b3t_A 158 IK--NIHILQSDWFSA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFL 234 (276)
T ss_dssp CC--SEEEECCSTTGG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEE
T ss_pred CC--ceEEEEcchhhh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEE
Confidence 64 799999998764 33568999999854332 2 13467899999999999999
Q ss_pred EEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEE
Q 036563 204 LCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIH 283 (288)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~ 283 (288)
++... +.+.+++.++++++||+.+++.....|...++
T Consensus 235 ~~~~~-------------------------------------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~ 271 (276)
T 2b3t_A 235 LLEHG-------------------------------------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVT 271 (276)
T ss_dssp EEECC-------------------------------------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEE
T ss_pred EEEEC-------------------------------------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEE
Confidence 86310 12567889999999999998888888888888
Q ss_pred Eeee
Q 036563 284 SGLK 287 (288)
Q Consensus 284 ~~~k 287 (288)
.++|
T Consensus 272 ~~~~ 275 (276)
T 2b3t_A 272 LGRY 275 (276)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8876
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=128.19 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=95.9
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+.++..++..+...++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++....+
T Consensus 11 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-----------------~~~~v~~vD~~~~~~~~a~~~~~~~~ 73 (178)
T 3hm2_A 11 QHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRST-----------------PQTTAVCFEISEERRERILSNAINLG 73 (178)
T ss_dssp HHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTS-----------------SSEEEEEECSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHC-----------------CCCeEEEEeCCHHHHHHHHHHHHHhC
Confidence 3455667777777788899999999999999999886 46899999999999999999988877
Q ss_pred CCCCceEEEEccccc-CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 149 YPDKSLLWVEGDAEA-LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~-~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
++ .++ ++.+|... ++...++||+|++...+++ ..+++++.++|+|||.+++...
T Consensus 74 ~~-~~~-~~~~d~~~~~~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 74 VS-DRI-AVQQGAPRAFDDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp CT-TSE-EEECCTTGGGGGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CC-CCE-EEecchHhhhhccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEee
Confidence 65 478 88888743 3333378999999998876 6789999999999999997654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.70 E-value=7e-16 Score=128.77 Aligned_cols=137 Identities=16% Similarity=0.151 Sum_probs=109.3
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
....+...+...++.+|||+|||+|.++..+++. + .+++++|+++.+++.++++....+++
T Consensus 43 ~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~------------------~~v~~vD~s~~~~~~a~~~~~~~g~~ 103 (204)
T 3njr_A 43 MRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-G------------------GRAITIEPRADRIENIQKNIDTYGLS 103 (204)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-T------------------CEEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-C------------------CEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 3345667777778889999999999999999887 3 89999999999999999998887774
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccc
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPA 230 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (288)
.+++++.+|+.+.......||+|++...+ +.. +++++.+.|+|||.+++......
T Consensus 104 -~~v~~~~~d~~~~~~~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~~------------------- 158 (204)
T 3njr_A 104 -PRMRAVQGTAPAALADLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTLE------------------- 158 (204)
T ss_dssp -TTEEEEESCTTGGGTTSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSHH-------------------
T ss_pred -CCEEEEeCchhhhcccCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCcc-------------------
Confidence 48999999988743233579999987744 456 99999999999999997543210
Q ss_pred ccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 231 IGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
+..++.+.+++.||++..+..
T Consensus 159 -----------------------~~~~~~~~l~~~g~~i~~i~~ 179 (204)
T 3njr_A 159 -----------------------SETLLTQLHARHGGQLLRIDI 179 (204)
T ss_dssp -----------------------HHHHHHHHHHHHCSEEEEEEE
T ss_pred -----------------------cHHHHHHHHHhCCCcEEEEEe
Confidence 345677889999998877653
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-17 Score=137.12 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=103.1
Q ss_pred HHHHHHHHhhcCC-CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 69 RLWKDRLVSKLNP-FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 69 ~~~~~~~~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
+.+.+.+.+.+.. .++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++....
T Consensus 15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-----------------~~~~v~~vD~~~~~~~~a~~~~~~~ 77 (215)
T 4dzr_A 15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALAC-----------------PGVSVTAVDLSMDALAVARRNAERF 77 (215)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHC-----------------TTEEEEEEECC--------------
T ss_pred HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhC-----------------CCCeEEEEECCHHHHHHHHHHHHHh
Confidence 3444556666654 667899999999999999999986 4579999999999999999887765
Q ss_pred CCCCCceEEEEcccccCCCCC-----CCeeEEEeccccccccCH--------------------------HHHHHHHHhh
Q 036563 148 GYPDKSLLWVEGDAEALCFED-----STMDGYTIAFGIRNVTHI--------------------------EKALAEAYRV 196 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~~~~-----~~~D~v~~~~~l~~~~~~--------------------------~~~l~~~~~~ 196 (288)
+. ++++..+|+.+ ++++ ++||+|+++..++...+. ..+++++.++
T Consensus 78 ~~---~~~~~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (215)
T 4dzr_A 78 GA---VVDWAAADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYV 153 (215)
T ss_dssp --------CCHHHHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGG
T ss_pred CC---ceEEEEcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHH
Confidence 43 67888888876 4443 789999997665433221 6788999999
Q ss_pred ccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHH--HcCCcEEEEEE
Q 036563 197 LKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMIS--DAGFQKVEYEN 274 (288)
Q Consensus 197 L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aGf~~v~~~~ 274 (288)
|+|||.+++.+... ...+.+.++++ ++||..+++..
T Consensus 154 LkpgG~l~~~~~~~------------------------------------------~~~~~~~~~l~~~~~gf~~~~~~~ 191 (215)
T 4dzr_A 154 LARGRAGVFLEVGH------------------------------------------NQADEVARLFAPWRERGFRVRKVK 191 (215)
T ss_dssp BCSSSEEEEEECTT------------------------------------------SCHHHHHHHTGGGGGGTEECCEEE
T ss_pred hcCCCeEEEEEECC------------------------------------------ccHHHHHHHHHHhhcCCceEEEEE
Confidence 99999955543321 14567788899 99999988888
Q ss_pred eeCCeeEEEEeee
Q 036563 275 LVGGVVAIHSGLK 287 (288)
Q Consensus 275 ~~~~~~~~~~~~k 287 (288)
...|...++.++|
T Consensus 192 ~~~~~~r~~~~~~ 204 (215)
T 4dzr_A 192 DLRGIDRVIAVTR 204 (215)
T ss_dssp CTTSCEEEEEEEE
T ss_pred ecCCCEEEEEEEE
Confidence 7778777777765
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-16 Score=134.18 Aligned_cols=145 Identities=11% Similarity=0.006 Sum_probs=108.7
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh----------cCC
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE----------RGY 149 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~----------~~~ 149 (288)
...++.+|||+|||+|..+..+++.. .+|+|+|+|+.|++.++++... .+.
T Consensus 65 ~~~~~~~vLD~GCG~G~~~~~La~~G-------------------~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~ 125 (252)
T 2gb4_A 65 KGQSGLRVFFPLCGKAIEMKWFADRG-------------------HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGA 125 (252)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHTT-------------------CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTC
T ss_pred cCCCCCeEEEeCCCCcHHHHHHHHCC-------------------CeEEEEECCHHHHHHHHHhcccccccccccccccc
Confidence 33467899999999999999998863 7999999999999999876531 000
Q ss_pred -----CCCceEEEEcccccCCCCC-CCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHH
Q 036563 150 -----PDKSLLWVEGDAEALCFED-STMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYD 221 (288)
Q Consensus 150 -----~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 221 (288)
...++++.++|+.++++.+ ++||+|++..++++++ +...+++++.++|||||.++++.+......
T Consensus 126 ~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~------- 198 (252)
T 2gb4_A 126 KVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK------- 198 (252)
T ss_dssp EEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS-------
T ss_pred cccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc-------
Confidence 0157999999999887654 7899999999998886 356799999999999999976544322100
Q ss_pred HhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 222 YYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
. .+. . ...+.+++.++|.+ +|+++.....
T Consensus 199 ---------~----~g~--~---------~~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 199 ---------H----AGP--P---------FYVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp ---------C----CCS--S---------CCCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred ---------C----CCC--C---------CCCCHHHHHHHhhC-CeEEEEEecc
Confidence 0 000 0 12478999999987 5998887654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-16 Score=128.53 Aligned_cols=143 Identities=20% Similarity=0.267 Sum_probs=110.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++ +|||+|||+|.++..+++.. .+++++|+++.+++.++++....+ .++.+..+|+.
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~-------------------~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~ 86 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLG-------------------YEVTAVDQSSVGLAKAKQLAQEKG---VKITTVQSNLA 86 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTT-------------------CEEEEECSSHHHHHHHHHHHHHHT---CCEEEECCBTT
T ss_pred CC-CEEEECCCCCHhHHHHHhCC-------------------CeEEEEECCHHHHHHHHHHHHhcC---CceEEEEcChh
Confidence 45 99999999999998888762 799999999999999999887664 36899999998
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcch
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSY 242 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (288)
..++++++||+|++.....+..+...+++++.++|+|||.+++......... +. .+ ....
T Consensus 87 ~~~~~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--------~~------~~----~~~~-- 146 (202)
T 2kw5_A 87 DFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ--------YN------TG----GPKD-- 146 (202)
T ss_dssp TBSCCTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG--------GT------SC----CSSS--
T ss_pred hcCCCcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccc--------CC------CC----CCCc--
Confidence 8887778999999965422224678899999999999999998776553221 00 00 0000
Q ss_pred hhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 243 QYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
...+++.+++.++|+ ||+++......
T Consensus 147 ------~~~~~~~~~l~~~l~--Gf~v~~~~~~~ 172 (202)
T 2kw5_A 147 ------LDLLPKLETLQSELP--SLNWLIANNLE 172 (202)
T ss_dssp ------GGGCCCHHHHHHHCS--SSCEEEEEEEE
T ss_pred ------ceeecCHHHHHHHhc--CceEEEEEEEE
Confidence 123569999999999 99999887654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=133.18 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=91.5
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.++.+|+.+|||+|||+|.++..+++..+ +.++|+++|+++.|++.++++.... +|+..+
T Consensus 72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG----------------~~G~V~avD~s~~~~~~l~~~a~~~----~ni~~V 131 (233)
T 4df3_A 72 ELPVKEGDRILYLGIASGTTASHMSDIIG----------------PRGRIYGVEFAPRVMRDLLTVVRDR----RNIFPI 131 (233)
T ss_dssp CCCCCTTCEEEEETCTTSHHHHHHHHHHC----------------TTCEEEEEECCHHHHHHHHHHSTTC----TTEEEE
T ss_pred hcCCCCCCEEEEecCcCCHHHHHHHHHhC----------------CCceEEEEeCCHHHHHHHHHhhHhh----cCeeEE
Confidence 46678999999999999999999999986 6799999999999999998887665 589999
Q ss_pred EcccccC---CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 158 EGDAEAL---CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 158 ~~d~~~~---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.+|.... +...+.+|+|++.. .+..+...++.++.+.|||||.+++..
T Consensus 132 ~~d~~~p~~~~~~~~~vDvVf~d~--~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 132 LGDARFPEKYRHLVEGVDGLYADV--AQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp ESCTTCGGGGTTTCCCEEEEEECC--CCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeccCccccccccceEEEEEEec--cCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 9887653 45567899998754 344567889999999999999998754
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.1e-16 Score=128.28 Aligned_cols=138 Identities=14% Similarity=0.134 Sum_probs=111.8
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..+++. +..+++++|+++.+++.++++....+.. ++.+..+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~------------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~ 118 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKL------------------GAKSVLATDISDESMTAAEENAALNGIY--DIALQKTSL 118 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHT------------------TCSEEEEEESCHHHHHHHHHHHHHTTCC--CCEEEESST
T ss_pred cCCCEEEEECCCCCHHHHHHHHC------------------CCCEEEEEECCHHHHHHHHHHHHHcCCC--ceEEEeccc
Confidence 35789999999999999988765 2469999999999999999999887764 499999998
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcc
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGS 241 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (288)
.+. .+++||+|+++..+++ ...+++++.++|+|||.+++.+....
T Consensus 119 ~~~--~~~~fD~i~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------ 163 (205)
T 3grz_A 119 LAD--VDGKFDLIVANILAEI---LLDLIPQLDSHLNEDGQVIFSGIDYL------------------------------ 163 (205)
T ss_dssp TTT--CCSCEEEEEEESCHHH---HHHHGGGSGGGEEEEEEEEEEEEEGG------------------------------
T ss_pred ccc--CCCCceEEEECCcHHH---HHHHHHHHHHhcCCCCEEEEEecCcc------------------------------
Confidence 764 3578999999887765 47889999999999999997543221
Q ss_pred hhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 242 YQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
+.+++.++++++||++++... ..+...+....+
T Consensus 164 ------------~~~~~~~~~~~~Gf~~~~~~~-~~~w~~~~~~~~ 196 (205)
T 3grz_A 164 ------------QLPKIEQALAENSFQIDLKMR-AGRWIGLAISRK 196 (205)
T ss_dssp ------------GHHHHHHHHHHTTEEEEEEEE-ETTEEEEEEEEC
T ss_pred ------------cHHHHHHHHHHcCCceEEeec-cCCEEEEEEecc
Confidence 356788999999999988766 466777666554
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=124.63 Aligned_cols=119 Identities=17% Similarity=0.175 Sum_probs=98.1
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+.+++.+...++.+|||+|||+|.++..+++. . .+++++|+++.+++.++++....++.
T Consensus 40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~------------------~~v~~~D~~~~~~~~a~~~~~~~~~~ 100 (194)
T 1dus_A 40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADE-V------------------KSTTMADINRRAIKLAKENIKLNNLD 100 (194)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-S------------------SEEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-C------------------CeEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3456677777778889999999999999988876 2 79999999999999999998877664
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEecccccc-ccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN-VTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+.++.+..+|+.+. .++++||+|+++..+++ ..+...+++++.++|+|||.+++....
T Consensus 101 ~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 101 NYDIRVVHSDLYEN-VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp TSCEEEEECSTTTT-CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ccceEEEECchhcc-cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 11499999998764 34668999999988876 346778999999999999999986543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.9e-16 Score=127.72 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=86.2
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..++... +..+++++|+++.+++.++++....++. ++.+..+|+.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~-----------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~ 125 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVR-----------------PEAHFTLLDSLGKRVRFLRQVQHELKLE--NIEPVQSRVE 125 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC-----------------TTSEEEEEESCHHHHHHHHHHHHHTTCS--SEEEEECCTT
T ss_pred CCCeEEEECCCCCHHHHHHHHHC-----------------CCCEEEEEeCCHHHHHHHHHHHHHcCCC--CeEEEecchh
Confidence 46799999999999999999876 4589999999999999999998887764 5999999998
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..+ +.++||+|+++. +.+...+++++.++|+|||.+++.
T Consensus 126 ~~~-~~~~~D~i~~~~----~~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 126 EFP-SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp TSC-CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred hCC-ccCCcCEEEEec----cCCHHHHHHHHHHhcCCCcEEEEE
Confidence 765 456899999754 356789999999999999999974
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.2e-16 Score=140.37 Aligned_cols=156 Identities=18% Similarity=0.260 Sum_probs=116.4
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.+..+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++ . +++++..+|+
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~-----------------p~~~~~~~D~-~~~~~~a~~------~--~~v~~~~~d~ 245 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIF-----------------PHLKCTVFDQ-PQVVGNLTG------N--ENLNFVGGDM 245 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHC-----------------TTSEEEEEEC-HHHHSSCCC------C--SSEEEEECCT
T ss_pred cCCCEEEEECCCcCHHHHHHHHHC-----------------CCCeEEEecc-HHHHhhccc------C--CCcEEEeCcc
Confidence 345799999999999999999987 4678999999 788765543 1 4699999998
Q ss_pred ccCCCCCCCeeEEEeccccccccCHH--HHHHHHHhhccC---CcEEEEEeccCCChH------HHHHHHHHhhcccccc
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIE--KALAEAYRVLKR---GGRFLCLELSHVDIP------VFKELYDYYSFSVIPA 230 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~L~p---gG~l~i~~~~~~~~~------~~~~~~~~~~~~~~~~ 230 (288)
.. +++ .||+|++.+++|++++.. .+|++++++|+| ||++++.+...++.. ......+...
T Consensus 246 ~~-~~~--~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~------ 316 (358)
T 1zg3_A 246 FK-SIP--SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVM------ 316 (358)
T ss_dssp TT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHH------
T ss_pred CC-CCC--CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHH------
Confidence 76 555 499999999999998866 999999999999 999999887655321 1111111110
Q ss_pred ccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 231 IGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
+. . .+ .+..+.++|+++|+++||+++++... .+...++.++|
T Consensus 317 ~~-~-~~------------g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~~ 358 (358)
T 1zg3_A 317 LT-M-FL------------GKERTKQEWEKLIYDAGFSSYKITPI-SGFKSLIEVYP 358 (358)
T ss_dssp HH-H-HS------------CCCEEHHHHHHHHHHTTCCEEEEEEE-TTTEEEEEEEC
T ss_pred hc-c-CC------------CCCCCHHHHHHHHHHcCCCeeEEEec-CCCcEEEEEeC
Confidence 00 0 00 01347899999999999999999884 56666666553
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.2e-17 Score=138.66 Aligned_cols=138 Identities=16% Similarity=0.221 Sum_probs=101.5
Q ss_pred HHHHhHhhHHHhhhhhhh---h----hhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccc
Q 036563 46 SNVFSSVAKNYDLMNDLM---S----GGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLE 118 (288)
Q Consensus 46 ~~~~~~~~~~y~~~~~~~---~----~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~ 118 (288)
+..|++.+..|+...... . ..+...+.+.+...+. .++.+|||||||+|..+..+++..
T Consensus 17 ~~~w~~~~~~yd~~~~~l~~~g~~vm~~we~~~m~~~a~~~~-~~G~rVLdiG~G~G~~~~~~~~~~------------- 82 (236)
T 3orh_A 17 SPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAP------------- 82 (236)
T ss_dssp HHHHTTSCEEECTTSSEEEETTEEEEEGGGHHHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHTTSC-------------
T ss_pred hhhHhcCcCCCCcchhhhhhcCHHHHHHHHHHHHHHHHHhhc-cCCCeEEEECCCccHHHHHHHHhC-------------
Confidence 344666666776432110 1 1122233334444443 467899999999999999888764
Q ss_pred cccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC--CCCCCCeeEEEe-----ccccccccCHHHHHH
Q 036563 119 DDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL--CFEDSTMDGYTI-----AFGIRNVTHIEKALA 191 (288)
Q Consensus 119 ~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~D~v~~-----~~~l~~~~~~~~~l~ 191 (288)
..+++++|+++.+++.++++....+ .++.++.+|+... .+++++||.|+. ...++|..+...+++
T Consensus 83 -----~~~v~~id~~~~~~~~a~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~ 154 (236)
T 3orh_A 83 -----IDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKN 154 (236)
T ss_dssp -----EEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHH
T ss_pred -----CcEEEEEeCCHHHHHHHHHHHhhCC---CceEEEeehHHhhcccccccCCceEEEeeeecccchhhhcchhhhhh
Confidence 2689999999999999999887765 4788899988654 467788999975 344567778899999
Q ss_pred HHHhhccCCcEEEE
Q 036563 192 EAYRVLKRGGRFLC 205 (288)
Q Consensus 192 ~~~~~L~pgG~l~i 205 (288)
++.|+|||||.|++
T Consensus 155 e~~rvLkPGG~l~f 168 (236)
T 3orh_A 155 HAFRLLKPGGVLTY 168 (236)
T ss_dssp THHHHEEEEEEEEE
T ss_pred hhhheeCCCCEEEE
Confidence 99999999999986
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-15 Score=131.07 Aligned_cols=173 Identities=13% Similarity=0.071 Sum_probs=121.5
Q ss_pred HhHHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhc------CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhh
Q 036563 41 KSQLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKL------NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQ 114 (288)
Q Consensus 41 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~ 114 (288)
..+++..|++.+.+.....+-....+..+.|...+...+ ...++.+|||||||+|..+..++...
T Consensus 32 ~~~~~~~~~~~l~~~~~~~nl~~i~~~~~~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~~--------- 102 (249)
T 3g89_A 32 HLEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVR--------- 102 (249)
T ss_dssp GHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHhcCCCCceECCHHHHhhceeeechhhhcccccCCCCEEEEEcCCCCHHHHHHHHHC---------
Confidence 345566677666665554433333344445544443322 23467899999999999999998876
Q ss_pred cccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCC---CCCeeEEEeccccccccCHHHHHH
Q 036563 115 DVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFE---DSTMDGYTIAFGIRNVTHIEKALA 191 (288)
Q Consensus 115 ~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~ 191 (288)
+..+|+++|+++.+++.++++....++. +++++.+|+++++.. .++||+|++..+ .+...+++
T Consensus 103 --------~~~~v~~vD~s~~~~~~a~~~~~~~~l~--~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~----~~~~~ll~ 168 (249)
T 3g89_A 103 --------PELELVLVDATRKKVAFVERAIEVLGLK--GARALWGRAEVLAREAGHREAYARAVARAV----APLCVLSE 168 (249)
T ss_dssp --------TTCEEEEEESCHHHHHHHHHHHHHHTCS--SEEEEECCHHHHTTSTTTTTCEEEEEEESS----CCHHHHHH
T ss_pred --------CCCEEEEEECCHHHHHHHHHHHHHhCCC--ceEEEECcHHHhhcccccCCCceEEEECCc----CCHHHHHH
Confidence 4689999999999999999999888874 699999999887542 468999998643 56788999
Q ss_pred HHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEE
Q 036563 192 EAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVE 271 (288)
Q Consensus 192 ~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 271 (288)
.+.++|+|||.+++.....+. . ...++.+.++..||.+.+
T Consensus 169 ~~~~~LkpgG~l~~~~g~~~~-~---------------------------------------e~~~~~~~l~~~G~~~~~ 208 (249)
T 3g89_A 169 LLLPFLEVGGAAVAMKGPRVE-E---------------------------------------ELAPLPPALERLGGRLGE 208 (249)
T ss_dssp HHGGGEEEEEEEEEEECSCCH-H---------------------------------------HHTTHHHHHHHHTEEEEE
T ss_pred HHHHHcCCCeEEEEEeCCCcH-H---------------------------------------HHHHHHHHHHHcCCeEEE
Confidence 999999999999874321110 0 123466788889999988
Q ss_pred EEEee
Q 036563 272 YENLV 276 (288)
Q Consensus 272 ~~~~~ 276 (288)
+..+.
T Consensus 209 ~~~~~ 213 (249)
T 3g89_A 209 VLALQ 213 (249)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 87664
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=139.03 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=91.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....++ ++.+..+|+
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~g-------------------~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~ 176 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLLG-------------------YDVTSWDHNENSIAFLNETKEKENL---NISTALYDI 176 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHTT-------------------CEEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCG
T ss_pred cCCCcEEEECCCCCHHHHHHHHCC-------------------CeEEEEECCHHHHHHHHHHHHHcCC---ceEEEEecc
Confidence 367899999999999999998873 7999999999999999999887753 799999999
Q ss_pred ccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEec
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
...+. +++||+|+++.+++|+++ ...+++++.++|+|||.++++..
T Consensus 177 ~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 177 NAANI-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp GGCCC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccc-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 88776 678999999999998854 56899999999999999877544
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=132.26 Aligned_cols=137 Identities=24% Similarity=0.309 Sum_probs=103.0
Q ss_pred HHHHHHhHhhHHHhhhhhhhhh-hhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccC
Q 036563 44 LVSNVFSSVAKNYDLMNDLMSG-GLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQ 122 (288)
Q Consensus 44 ~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (288)
.....|+.++..|+........ ...+...+.+...++ ++.+|||+|||+|.++..+++..
T Consensus 16 ~~~~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~----------------- 76 (260)
T 2avn_A 16 RSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERG----------------- 76 (260)
T ss_dssp CHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTT-----------------
T ss_pred hhcchhhHHHHHHHHhccccchhHHHHHHHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcC-----------------
Confidence 3456677777777765421111 111222333444443 67899999999999999888762
Q ss_pred CCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccc-cCHHHHHHHHHhhccCCc
Q 036563 123 EETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV-THIEKALAEAYRVLKRGG 201 (288)
Q Consensus 123 ~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG 201 (288)
.+++++|+|+.+++.++++.. .+ +..+|+..+++++++||+|++..++.|+ +++..+|+++.++|+|||
T Consensus 77 --~~v~gvD~s~~~l~~a~~~~~------~~--~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG 146 (260)
T 2avn_A 77 --FEVVLVDPSKEMLEVAREKGV------KN--VVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDG 146 (260)
T ss_dssp --CEEEEEESCHHHHHHHHHHTC------SC--EEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEE
T ss_pred --CeEEEEeCCHHHHHHHHhhcC------CC--EEECcHHHCCCCCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCe
Confidence 789999999999999988753 12 7889998888888899999998866555 789999999999999999
Q ss_pred EEEEEecc
Q 036563 202 RFLCLELS 209 (288)
Q Consensus 202 ~l~i~~~~ 209 (288)
.+++...+
T Consensus 147 ~l~~~~~~ 154 (260)
T 2avn_A 147 LLIATVDN 154 (260)
T ss_dssp EEEEEEEB
T ss_pred EEEEEeCC
Confidence 99986554
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=134.50 Aligned_cols=141 Identities=16% Similarity=0.249 Sum_probs=100.5
Q ss_pred HHHHhHhhHHHhhhhhhh-------hhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccc
Q 036563 46 SNVFSSVAKNYDLMNDLM-------SGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLE 118 (288)
Q Consensus 46 ~~~~~~~~~~y~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~ 118 (288)
...|+..+..|+..+... ...+...+.+.+...+ ..++.+|||+|||+|.++..+++..
T Consensus 17 ~~~~~~~~~~Yd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~------------- 82 (236)
T 1zx0_A 17 SPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAP------------- 82 (236)
T ss_dssp HHHHTTSCEEECTTSCEEEETTEEEEEGGGHHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSC-------------
T ss_pred chhhhcchhhcCCccchhhccchHHHHHHHHHHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcC-------------
Confidence 445666666676332210 0112222333344433 3467899999999999999986643
Q ss_pred cccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC--CCCCCCeeEEEe-ccccc----cccCHHHHHH
Q 036563 119 DDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL--CFEDSTMDGYTI-AFGIR----NVTHIEKALA 191 (288)
Q Consensus 119 ~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~D~v~~-~~~l~----~~~~~~~~l~ 191 (288)
..+++++|+|+.|++.++++....+ .++.++.+|+.++ ++++++||+|++ .+.+. +..+...+++
T Consensus 83 -----~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~ 154 (236)
T 1zx0_A 83 -----IDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKN 154 (236)
T ss_dssp -----EEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHH
T ss_pred -----CCeEEEEcCCHHHHHHHHHHHHhcC---CCeEEEecCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHH
Confidence 2589999999999999999887654 4799999999887 788889999999 55431 1223457899
Q ss_pred HHHhhccCCcEEEEEec
Q 036563 192 EAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 192 ~~~~~L~pgG~l~i~~~ 208 (288)
+++++|||||++++.+.
T Consensus 155 ~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 155 HAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp THHHHEEEEEEEEECCH
T ss_pred HHHHhcCCCeEEEEEec
Confidence 99999999999997654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=135.19 Aligned_cols=170 Identities=14% Similarity=0.116 Sum_probs=114.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC-----CCCceEEE
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY-----PDKSLLWV 157 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~v~~~ 157 (288)
++.+|||+|||+|..+..+++. +..+++++|+++.|++.++++....+. ...++.+.
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~------------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 95 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG------------------RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFI 95 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT------------------TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEE
T ss_pred CCCEEEEECCCCcHHHHHHHhc------------------CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEE
Confidence 5679999999999999988875 247999999999999999998765310 01378999
Q ss_pred EcccccCC----CC--CCCeeEEEeccccccc-c---CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccc
Q 036563 158 EGDAEALC----FE--DSTMDGYTIAFGIRNV-T---HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSV 227 (288)
Q Consensus 158 ~~d~~~~~----~~--~~~~D~v~~~~~l~~~-~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 227 (288)
.+|+...+ ++ +++||+|++.+++|+. . +...+++++.++|+|||.+++..... .. +...+....
T Consensus 96 ~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~---~~---l~~~~~~~~ 169 (313)
T 3bgv_A 96 TADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS---FE---LIRRLEASE 169 (313)
T ss_dssp ECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH---HH---HHHHHTTSS
T ss_pred EecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh---HH---HHHHHHhhc
Confidence 99998875 43 3589999999999887 3 35689999999999999999765432 21 222211110
Q ss_pred ccccccc-----ccCC------CcchhhhH-HH---HhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 228 IPAIGEL-----VAGD------RGSYQYLV-ES---VRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 228 ~~~~~~~-----~~~~------~~~~~~~~-~~---~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
....+.. +... ...+.+.. .. .....+.+++.+++++.||+++...++.
T Consensus 170 ~~~~~~~~~~~~f~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f~ 233 (313)
T 3bgv_A 170 TESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFL 233 (313)
T ss_dssp SSEEECSSEEEEESCSSCCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEHH
T ss_pred cCccCCeeEEEEeCCCCCCCCccceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCHH
Confidence 0001100 0000 01111100 11 1224578899999999999999987654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=134.45 Aligned_cols=108 Identities=13% Similarity=0.142 Sum_probs=83.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC----CceEEEE
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD----KSLLWVE 158 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~----~~v~~~~ 158 (288)
++.+|||||||+|..+..++... ..+|+|+|+|+.|++.|+++....+... .++.+..
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~------------------~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~ 109 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE------------------IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQ 109 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT------------------CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEE
T ss_pred CCCeEEEEecCCcHhHHHHHhcC------------------CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhh
Confidence 46799999999998666555542 3789999999999999999876654210 0256777
Q ss_pred ccc------ccC--CCCCCCeeEEEeccccccc---cCHHHHHHHHHhhccCCcEEEEEec
Q 036563 159 GDA------EAL--CFEDSTMDGYTIAFGIRNV---THIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 159 ~d~------~~~--~~~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.|+ .++ ++++++||+|+|.+++|+. .+...+|++++++|||||++++...
T Consensus 110 ~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 110 ETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp CCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 777 322 2456789999999999865 3568899999999999999987554
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-15 Score=125.33 Aligned_cols=136 Identities=14% Similarity=0.134 Sum_probs=104.9
Q ss_pred CCCCCeEEEecCC-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 81 PFPGMKHLDVAGG-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 81 ~~~~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
..++.+|||+||| +|.++..+++.. ..+++++|+++.+++.++++....+. +++++.+
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~------------------~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~ 111 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF------------------NCKVTATEVDEEFFEYARRNIERNNS---NVRLVKS 111 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH------------------CCEEEEEECCHHHHHHHHHHHHHTTC---CCEEEEC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc------------------CCEEEEEECCHHHHHHHHHHHHHhCC---CcEEEeC
Confidence 4567899999999 999999998874 27999999999999999999888764 6899999
Q ss_pred ccccC-CCCCCCeeEEEeccccccccC-------------------HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHH
Q 036563 160 DAEAL-CFEDSTMDGYTIAFGIRNVTH-------------------IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKEL 219 (288)
Q Consensus 160 d~~~~-~~~~~~~D~v~~~~~l~~~~~-------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~ 219 (288)
|+..+ ++++++||+|+++..+++..+ ...+++++.++|+|||.+++.....+
T Consensus 112 d~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------- 183 (230)
T 3evz_A 112 NGGIIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-------- 183 (230)
T ss_dssp SSCSSTTTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH--------
T ss_pred CchhhhhcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH--------
Confidence 97543 345678999999877654332 47789999999999999997532110
Q ss_pred HHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCC
Q 036563 220 YDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGG 278 (288)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 278 (288)
...+++.++++++||.+..+....+.
T Consensus 184 ---------------------------------~~~~~~~~~l~~~g~~~~~~~~~~g~ 209 (230)
T 3evz_A 184 ---------------------------------KLLNVIKERGIKLGYSVKDIKFKVGT 209 (230)
T ss_dssp ---------------------------------HHHHHHHHHHHHTTCEEEEEEECCCC
T ss_pred ---------------------------------hHHHHHHHHHHHcCCceEEEEecCCC
Confidence 02467788999999977666544443
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=123.70 Aligned_cols=130 Identities=12% Similarity=0.039 Sum_probs=105.2
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..+++. . +++++|+|+.|++. . +++.+..+|+
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~-------------------~-~v~gvD~s~~~~~~-------~----~~~~~~~~d~ 70 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR-------------------N-TVVSTDLNIRALES-------H----RGGNLVRADL 70 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT-------------------S-EEEEEESCHHHHHT-------C----SSSCEEECST
T ss_pred CCCCeEEEeccCccHHHHHHHhc-------------------C-cEEEEECCHHHHhc-------c----cCCeEEECCh
Confidence 45679999999999999988775 3 99999999999886 1 5789999999
Q ss_pred ccCCCCCCCeeEEEeccccccccCH---------HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHI---------EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~---------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
.+ ++++++||+|+++..+++.++. ..+++++.+.+ |||.+++.....
T Consensus 71 ~~-~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~---------------------- 126 (170)
T 3q87_B 71 LC-SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA---------------------- 126 (170)
T ss_dssp TT-TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG----------------------
T ss_pred hh-hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC----------------------
Confidence 77 4555789999999888765443 56888888888 999999765221
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEee
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGL 286 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~ 286 (288)
...+++.++++++||+.+.+.....+.-.++..+
T Consensus 127 --------------------~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~ 160 (170)
T 3q87_B 127 --------------------NRPKEVLARLEERGYGTRILKVRKILGETVYIIK 160 (170)
T ss_dssp --------------------GCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEE
T ss_pred --------------------CCHHHHHHHHHHCCCcEEEEEeeccCCceEEEEE
Confidence 1467888999999999999988888777766654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=128.99 Aligned_cols=104 Identities=18% Similarity=0.238 Sum_probs=85.9
Q ss_pred HhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 76 VSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
++.+...++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++.... +++.
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~-----------------~~~~v~gvD~s~~~~~~a~~~~~~~----~~v~ 125 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIA-----------------DKGIVYAIEYAPRIMRELLDACAER----ENII 125 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHT-----------------TTSEEEEEESCHHHHHHHHHHTTTC----TTEE
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHc-----------------CCcEEEEEECCHHHHHHHHHHhhcC----CCeE
Confidence 444555678899999999999999999986 2479999999999999998886554 5899
Q ss_pred EEEccccc----CCCCCCCeeEEEeccccccccCH---HHHHHHHHhhccCCcEEEEE
Q 036563 156 WVEGDAEA----LCFEDSTMDGYTIAFGIRNVTHI---EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 156 ~~~~d~~~----~~~~~~~~D~v~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.+|+.. .++. ++||+|+ +++.++ ..+++++.++|+|||.+++.
T Consensus 126 ~~~~d~~~~~~~~~~~-~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 126 PILGDANKPQEYANIV-EKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEECCTTCGGGGTTTS-CCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCCcccccccC-ccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 99999987 5555 6899998 334444 77899999999999999975
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-15 Score=129.39 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=90.9
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
..+...++.+|||||||+|.++..++... ++++|+++|+++.|++.|+++....++ .++++
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~-----------------~ga~V~gIDis~~~l~~Ar~~~~~~gl--~~v~~ 176 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHV-----------------YGMRVNVVEIEPDIAELSRKVIEGLGV--DGVNV 176 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHT-----------------TCCEEEEEESSHHHHHHHHHHHHHHTC--CSEEE
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHc-----------------cCCEEEEEECCHHHHHHHHHHHHhcCC--CCeEE
Confidence 45677889999999999998775555443 358999999999999999999988777 58999
Q ss_pred EEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 157 VEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 157 ~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+.+|+.+++ +++||+|++... .++..++++++.++|||||++++.+
T Consensus 177 v~gDa~~l~--d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 177 ITGDETVID--GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp EESCGGGGG--GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EECchhhCC--CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 999998865 678999998654 4788999999999999999999865
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-15 Score=121.85 Aligned_cols=116 Identities=22% Similarity=0.298 Sum_probs=95.2
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
......+...+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....+
T Consensus 19 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-------------------~~v~~~D~~~~~~~~a~~~~~~~~ 79 (192)
T 1l3i_A 19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-------------------RRVYAIDRNPEAISTTEMNLQRHG 79 (192)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-------------------SEEEEEESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-------------------CEEEEEECCHHHHHHHHHHHHHcC
Confidence 3444566677777788899999999999999888863 799999999999999999988776
Q ss_pred CCCCceEEEEcccccCCCCC-CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 149 YPDKSLLWVEGDAEALCFED-STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.. .++.+..+|+.. .++. ++||+|++..+++ +...+++++.++|+|||.+++...
T Consensus 80 ~~-~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 80 LG-DNVTLMEGDAPE-ALCKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp CC-TTEEEEESCHHH-HHTTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CC-cceEEEecCHHH-hcccCCCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEEEec
Confidence 64 579999999876 2222 4799999987765 468899999999999999997543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-15 Score=129.33 Aligned_cols=139 Identities=13% Similarity=0.125 Sum_probs=109.2
Q ss_pred HHhhcCCC-CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 75 LVSKLNPF-PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 75 ~~~~l~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
+...+... ++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++...++. .+
T Consensus 40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~------------------~~~v~gvDi~~~~~~~a~~n~~~~~~~-~~ 100 (259)
T 3lpm_A 40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRT------------------KAKIVGVEIQERLADMAKRSVAYNQLE-DQ 100 (259)
T ss_dssp HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTC------------------CCEEEEECCSHHHHHHHHHHHHHTTCT-TT
T ss_pred HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhc------------------CCcEEEEECCHHHHHHHHHHHHHCCCc-cc
Confidence 34455566 78899999999999999998875 249999999999999999999888876 67
Q ss_pred eEEEEcccccCC--CCCCCeeEEEeccccccc--------------------cCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 154 LLWVEGDAEALC--FEDSTMDGYTIAFGIRNV--------------------THIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 154 v~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~--------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
++++.+|+.+.. ++.++||+|+++..+... .+...+++.+.++|+|||.++++.. +
T Consensus 101 v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~ 178 (259)
T 3lpm_A 101 IEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR--P 178 (259)
T ss_dssp EEEECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC--T
T ss_pred EEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc--H
Confidence 999999998864 456789999998665433 1235689999999999999997421 0
Q ss_pred ChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 212 DIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
....++.+.+++.||....+..+
T Consensus 179 -----------------------------------------~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 -----------------------------------------ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp -----------------------------------------TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred -----------------------------------------HHHHHHHHHHHHCCCceEEEEEe
Confidence 13456777888889888777655
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=127.53 Aligned_cols=116 Identities=18% Similarity=0.263 Sum_probs=95.5
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
+.+.+...+ .++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++....
T Consensus 32 ~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~------------------~~~v~~~D~s~~~~~~a~~~~~~~--- 88 (215)
T 2pxx_A 32 FRALLEPEL--RPEDRILVLGCGNSALSYELFLGG------------------FPNVTSVDYSSVVVAAMQACYAHV--- 88 (215)
T ss_dssp HHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTT------------------CCCEEEEESCHHHHHHHHHHTTTC---
T ss_pred HHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcC------------------CCcEEEEeCCHHHHHHHHHhcccC---
Confidence 334444444 457799999999999999988874 138999999999999999887642
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEecccccccc---------------CHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT---------------HIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~---------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+++.+..+|+..+++++++||+|++..+++++. +...+++++.++|+|||.+++.++..
T Consensus 89 -~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 89 -PQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp -TTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred -CCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 579999999988887778999999988876543 56789999999999999999887655
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-15 Score=122.72 Aligned_cols=107 Identities=15% Similarity=0.212 Sum_probs=86.1
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..+++. + .+|+++|+|+.|++.++++....++ ++++++..+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~-~------------------~~v~~vD~s~~~l~~a~~~~~~~~~--~~v~~~~~~~ 79 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGL-S------------------KKVYAFDVQEQALGKTSQRLSDLGI--ENTELILDGH 79 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTT-S------------------SEEEEEESCHHHHHHHHHHHHHHTC--CCEEEEESCG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-C------------------CEEEEEECCHHHHHHHHHHHHHcCC--CcEEEEeCcH
Confidence 46789999999999999999887 2 8999999999999999999988776 4899999887
Q ss_pred ccCC-CCCCCeeEEEeccc-ccc--------ccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 162 EALC-FEDSTMDGYTIAFG-IRN--------VTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 162 ~~~~-~~~~~~D~v~~~~~-l~~--------~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
..+. +.+++||+|+++.. +++ ..+...+++++.++|+|||.+++..+.
T Consensus 80 ~~l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 80 ENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp GGGGGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred HHHHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 7653 44678999998743 221 123467899999999999999987654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.5e-15 Score=123.91 Aligned_cols=106 Identities=20% Similarity=0.248 Sum_probs=89.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++....++ .++.++.+|+.
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~-----------------p~~~v~gvD~s~~~l~~a~~~~~~~~~--~~v~~~~~d~~ 101 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQN-----------------PDINYIGIDIQKSVLSYALDKVLEVGV--PNIKLLWVDGS 101 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHC-----------------TTSEEEEEESCHHHHHHHHHHHHHHCC--SSEEEEECCSS
T ss_pred CCCeEEEEccCcCHHHHHHHHHC-----------------CCCCEEEEEcCHHHHHHHHHHHHHcCC--CCEEEEeCCHH
Confidence 46789999999999999999986 468999999999999999999887776 48999999998
Q ss_pred cCC--CCCCCeeEEEecccccccc--------CHHHHHHHHHhhccCCcEEEEEe
Q 036563 163 ALC--FEDSTMDGYTIAFGIRNVT--------HIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 163 ~~~--~~~~~~D~v~~~~~l~~~~--------~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.++ +++++||+|++++...+.. ....+++++.++|+|||.+++..
T Consensus 102 ~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 102 DLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHhhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 765 6677899999987643322 12579999999999999998753
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=127.93 Aligned_cols=111 Identities=17% Similarity=0.197 Sum_probs=86.1
Q ss_pred HhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHh----hhcCCCC
Q 036563 76 VSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRA----LERGYPD 151 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~----~~~~~~~ 151 (288)
+..+...++.+|||+|||+|.++..+++.. +..+++++|+|+.|++.+.+.. ...++
T Consensus 20 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~~-----------------p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-- 80 (218)
T 3mq2_A 20 FEQLRSQYDDVVLDVGTGDGKHPYKVARQN-----------------PSRLVVALDADKSRMEKISAKAAAKPAKGGL-- 80 (218)
T ss_dssp HHHHHTTSSEEEEEESCTTCHHHHHHHHHC-----------------TTEEEEEEESCGGGGHHHHHHHTSCGGGTCC--
T ss_pred HHHhhccCCCEEEEecCCCCHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHHhhhhcCC--
Confidence 344445677899999999999999999986 4689999999999988643322 23333
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccc---c--ccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFG---I--RNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~---l--~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+++.+..+|+.+++++++. |.+++... + ++++++..+++++.++|||||.+++.
T Consensus 81 ~~v~~~~~d~~~l~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 81 PNLLYLWATAERLPPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp TTEEEEECCSTTCCSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred CceEEEecchhhCCCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 4899999999998877665 77664332 2 25667789999999999999999973
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=124.36 Aligned_cols=113 Identities=16% Similarity=0.218 Sum_probs=92.9
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..++.+|||+|||+|.++..+++..+ +..+++++|+++.+++.+++++...++. +++.++.+|
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~----------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d 82 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVG----------------ENGRVFGFDIQDKAIANTTKKLTDLNLI-DRVTLIKDG 82 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHC----------------TTCEEEEECSCHHHHHHHHHHHHHTTCG-GGEEEECSC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhC----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CCeEEEECC
Confidence 35678999999999999999999863 3579999999999999999999887664 589999999
Q ss_pred cccCC-CCCCCeeEEEeccccc---------cccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 161 AEALC-FEDSTMDGYTIAFGIR---------NVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 161 ~~~~~-~~~~~~D~v~~~~~l~---------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+..++ +.+++||+|+++..+. ...+...+++++.++|+|||.+++..+..
T Consensus 83 ~~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 83 HQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp GGGGGGTCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred HHHHhhhccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 88775 5567899999987551 11134679999999999999999876543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.8e-15 Score=128.03 Aligned_cols=113 Identities=18% Similarity=0.262 Sum_probs=96.5
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
...+...+...++.+|||+|||+|.++..+++..+ +..+++++|+++.+++.+++++...+++
T Consensus 82 ~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~----------------~~~~v~~~D~~~~~~~~a~~~~~~~~~~- 144 (255)
T 3mb5_A 82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIVG----------------PEGRVVSYEIREDFAKLAWENIKWAGFD- 144 (255)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC----------------TTSEEEEECSCHHHHHHHHHHHHHHTCT-
T ss_pred HHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhC----------------CCeEEEEEecCHHHHHHHHHHHHHcCCC-
Confidence 34567777888889999999999999999999853 4689999999999999999999888775
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+++.+..+|+.+. +++++||+|+++ .+++..+++++.++|+|||.+++..
T Consensus 145 ~~v~~~~~d~~~~-~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~ 194 (255)
T 3mb5_A 145 DRVTIKLKDIYEG-IEEENVDHVILD-----LPQPERVVEHAAKALKPGGFFVAYT 194 (255)
T ss_dssp TTEEEECSCGGGC-CCCCSEEEEEEC-----SSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CceEEEECchhhc-cCCCCcCEEEEC-----CCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 5699999999864 566789999973 4567789999999999999999754
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-15 Score=134.95 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=98.4
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
...+.+.+.+.+...++.+|||+|||+|.++..+++.. ..+++++|+++ |++.++++....
T Consensus 49 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g------------------~~~v~gvD~s~-~~~~a~~~~~~~ 109 (340)
T 2fyt_A 49 TESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG------------------AKKVLGVDQSE-ILYQAMDIIRLN 109 (340)
T ss_dssp HHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTT------------------CSEEEEEESST-HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcC------------------CCEEEEEChHH-HHHHHHHHHHHc
Confidence 34555677776666778899999999999999888862 36999999996 999999998888
Q ss_pred CCCCCceEEEEcccccCCCCCCCeeEEEecc---ccccccCHHHHHHHHHhhccCCcEEE
Q 036563 148 GYPDKSLLWVEGDAEALCFEDSTMDGYTIAF---GIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
++. +++.++.+|+.++++++++||+|++.. .+.+..+...++.++.++|+|||.++
T Consensus 110 ~~~-~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 110 KLE-DTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TCT-TTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CCC-CcEEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 775 689999999998888778999999876 35555667889999999999999987
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=136.53 Aligned_cols=157 Identities=11% Similarity=0.111 Sum_probs=116.8
Q ss_pred hhHHhHHHHHHHhHhhHHHhhhh------hhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhh
Q 036563 38 AEEKSQLVSNVFSSVAKNYDLMN------DLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRR 111 (288)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~y~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~ 111 (288)
.+-...-+.++|+.....++.++ ..............++..+...++.+|||||||+|.++..++...+
T Consensus 122 ~~~~~~Il~~~Y~r~V~~~~~L~~Ye~Fs~~vYGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g----- 196 (438)
T 3uwp_A 122 TGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN----- 196 (438)
T ss_dssp HHHHHHHHHHHHHHHCSCGGGSCCCSSSCGGGGGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHhhcCCCHHHhcCcccCCCcccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-----
Confidence 44556667777775544444332 2223344445556777888888999999999999999999988752
Q ss_pred hhhcccccccCCCceEEEEeCChhHHHHHHHHh-------hhcCCCCCceEEEEcccccCCCCC--CCeeEEEecccccc
Q 036563 112 ALQDVLEDDLQEETRIYVCDINPNMLNVGKKRA-------LERGYPDKSLLWVEGDAEALCFED--STMDGYTIAFGIRN 182 (288)
Q Consensus 112 ~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~-------~~~~~~~~~v~~~~~d~~~~~~~~--~~~D~v~~~~~l~~ 182 (288)
..+++|+|+++.+++.|++.. ...++...++.++++|+.++++.+ ..+|+|+++..+ +
T Consensus 197 ------------~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F 263 (438)
T 3uwp_A 197 ------------CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-F 263 (438)
T ss_dssp ------------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-C
T ss_pred ------------CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccCCccEEEEcccc-c
Confidence 346999999999999988753 233432258999999998876543 469999998765 4
Q ss_pred ccCHHHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 183 VTHIEKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 183 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
.++....|.++.+.|||||.|++.+...+.
T Consensus 264 ~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~ 293 (438)
T 3uwp_A 264 GPEVDHQLKERFANMKEGGRIVSSKPFAPL 293 (438)
T ss_dssp CHHHHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred CchHHHHHHHHHHcCCCCcEEEEeecccCC
Confidence 567888899999999999999998776664
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=136.61 Aligned_cols=141 Identities=15% Similarity=0.176 Sum_probs=110.5
Q ss_pred HHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCC
Q 036563 44 LVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQE 123 (288)
Q Consensus 44 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (288)
....+|+..+..|+.............+.+.+.......++.+|||+|||+|.++..+++..
T Consensus 24 ~~~~yf~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g------------------ 85 (376)
T 3r0q_C 24 DYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAG------------------ 85 (376)
T ss_dssp ----CTTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTT------------------
T ss_pred cHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcC------------------
Confidence 34566777777776533333344455667777777777788999999999999999998873
Q ss_pred CceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccc---cCHHHHHHHHHhhccCC
Q 036563 124 ETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV---THIEKALAEAYRVLKRG 200 (288)
Q Consensus 124 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~L~pg 200 (288)
..+|+++|++ .|++.++++....++. +++.++.+|+.+++++ ++||+|++....+.. .....+++.+.++|+||
T Consensus 86 ~~~V~gvD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~Lkpg 162 (376)
T 3r0q_C 86 ARKVYAVEAT-KMADHARALVKANNLD-HIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPT 162 (376)
T ss_dssp CSEEEEEESS-TTHHHHHHHHHHTTCT-TTEEEEESCGGGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEE
T ss_pred CCEEEEEccH-HHHHHHHHHHHHcCCC-CeEEEEECchhhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCC
Confidence 2599999999 9999999999888876 6799999999988766 789999997654444 45788999999999999
Q ss_pred cEEEE
Q 036563 201 GRFLC 205 (288)
Q Consensus 201 G~l~i 205 (288)
|.+++
T Consensus 163 G~li~ 167 (376)
T 3r0q_C 163 GVMYP 167 (376)
T ss_dssp EEEES
T ss_pred eEEEE
Confidence 99985
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.2e-16 Score=129.81 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=97.2
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++. +++.++.+|+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~-------------------~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~ 100 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQA-------------------ARWAAYDFSPELLKLARANA-------PHADVYEWNG 100 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGS-------------------SEEEEEESCHHHHHHHHHHC-------TTSEEEECCS
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC-------------------CEEEEEECCHHHHHHHHHhC-------CCceEEEcch
Confidence 457899999999999999888872 79999999999999998872 5799999999
Q ss_pred -ccCCCC-CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCC
Q 036563 162 -EALCFE-DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDR 239 (288)
Q Consensus 162 -~~~~~~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (288)
..++++ +++||+|+++ .++..+++++.++|+|||.++...
T Consensus 101 ~~~~~~~~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~~~~-------------------------------- 142 (226)
T 3m33_A 101 KGELPAGLGAPFGLIVSR------RGPTSVILRLPELAAPDAHFLYVG-------------------------------- 142 (226)
T ss_dssp CSSCCTTCCCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEEEEE--------------------------------
T ss_pred hhccCCcCCCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEEEeC--------------------------------
Confidence 556777 7899999987 456778999999999999998110
Q ss_pred cchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 240 GSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
.+.+.+++.+.++++||.++.+...
T Consensus 143 -----------~~~~~~~~~~~l~~~Gf~~~~~~~~ 167 (226)
T 3m33_A 143 -----------PRLNVPEVPERLAAVGWDIVAEDHV 167 (226)
T ss_dssp -----------SSSCCTHHHHHHHHTTCEEEEEEEE
T ss_pred -----------CcCCHHHHHHHHHHCCCeEEEEEee
Confidence 0224567888999999988777644
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=127.31 Aligned_cols=154 Identities=18% Similarity=0.219 Sum_probs=100.7
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCC-hhHHHHH---HHHhhhcCCCCCceEEE
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDIN-PNMLNVG---KKRALERGYPDKSLLWV 157 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s-~~~~~~a---~~~~~~~~~~~~~v~~~ 157 (288)
.++.+|||||||+|.++..+++.. ++.+++|+|+| +.|++.| +++....++ +++.+.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~-----------------~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~--~~v~~~ 83 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAIND-----------------QNTFYIGIDPVKENLFDISKKIIKKPSKGGL--SNVVFV 83 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTC-----------------TTEEEEEECSCCGGGHHHHHHHTSCGGGTCC--SSEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhC-----------------CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC--CCeEEE
Confidence 456799999999999999998764 46899999999 7777776 666666665 479999
Q ss_pred EcccccCCCC-CCCeeEEEecccccc-----ccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 158 EGDAEALCFE-DSTMDGYTIAFGIRN-----VTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 158 ~~d~~~~~~~-~~~~D~v~~~~~l~~-----~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
.+|+..++.. .+.+|.+.+++.... ..+...++++++++|||||.+++.............. .
T Consensus 84 ~~d~~~l~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~-----------~ 152 (225)
T 3p2e_A 84 IAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIK-----------K 152 (225)
T ss_dssp CCBTTBCCGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------------
T ss_pred EcCHHHhhhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhh-----------h
Confidence 9999887532 256777776654322 1234568999999999999999733222111000000 0
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
...... .. . +...+++..+++++||+++....+.
T Consensus 153 ~~~~~~-~~--~--------~~~~~el~~~l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 153 RGLPLL-SK--A--------YFLSEQYKAELSNSGFRIDDVKELD 186 (225)
T ss_dssp -----C-CH--H--------HHHSHHHHHHHHHHTCEEEEEEEEC
T ss_pred cCCCCC-Ch--h--------hcchHHHHHHHHHcCCCeeeeeecC
Confidence 000000 00 0 1123458999999999998887654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.5e-15 Score=124.11 Aligned_cols=106 Identities=13% Similarity=0.183 Sum_probs=88.5
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||||||+|.++..+++.. +...++++|+++.+++.++++....++ .++.++.+|+.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~-----------------p~~~v~giD~s~~~l~~a~~~~~~~~~--~nv~~~~~d~~ 98 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQN-----------------PDINYIGIELFKSVIVTAVQKVKDSEA--QNVKLLNIDAD 98 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHC-----------------TTSEEEEECSCHHHHHHHHHHHHHSCC--SSEEEECCCGG
T ss_pred CCceEEEEecCCCHHHHHHHHHC-----------------CCCCEEEEEechHHHHHHHHHHHHcCC--CCEEEEeCCHH
Confidence 46789999999999999999886 468999999999999999999887776 47999999998
Q ss_pred cCC--CCCCCeeEEEeccccccccC--------HHHHHHHHHhhccCCcEEEEEe
Q 036563 163 ALC--FEDSTMDGYTIAFGIRNVTH--------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 163 ~~~--~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.++ +++++||.|++++...+... ...+++++.++|+|||.+++..
T Consensus 99 ~l~~~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 99 TLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp GHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred HHHhhcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 764 66778999988765432221 3678999999999999999754
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=8e-15 Score=125.97 Aligned_cols=112 Identities=20% Similarity=0.292 Sum_probs=95.7
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc-CCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER-GYPD 151 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~ 151 (288)
..+...+...++.+|||+|||+|.++..+++..+ +..+++++|+++.+++.+++++... +.
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~----------------~~~~v~~~D~~~~~~~~a~~~~~~~~g~-- 147 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVG----------------EKGLVESYEARPHHLAQAERNVRAFWQV-- 147 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC----------------TTSEEEEEESCHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhC----------------CCCEEEEEeCCHHHHHHHHHHHHHhcCC--
Confidence 4566777778889999999999999999999853 4589999999999999999998766 52
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+++.+..+|+.+.++++++||+|+++ .+++..+++++.++|+|||.+++..
T Consensus 148 ~~v~~~~~d~~~~~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~ 198 (258)
T 2pwy_A 148 ENVRFHLGKLEEAELEEAAYDGVALD-----LMEPWKVLEKAALALKPDRFLVAYL 198 (258)
T ss_dssp CCEEEEESCGGGCCCCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEEECchhhcCCCCCCcCEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEe
Confidence 58999999998876777789999973 4567789999999999999999765
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-15 Score=129.79 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=90.5
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc-CCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER-GYPD 151 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~ 151 (288)
+.+...+...++.+|||+|||+|.++..+++... +..+++++|+++.+++.++++.... +.
T Consensus 100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~----------------~~~~v~~vD~s~~~~~~a~~~~~~~~g~-- 161 (275)
T 1yb2_A 100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALN----------------GKGTLTVVERDEDNLKKAMDNLSEFYDI-- 161 (275)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHT----------------TSSEEEEECSCHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcC----------------CCCEEEEEECCHHHHHHHHHHHHhcCCC--
Confidence 3556677778889999999999999999998742 4589999999999999999998776 54
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+++.+..+|+.+ ++++++||+|++ +.+++..+++++.++|+|||.+++..
T Consensus 162 ~~v~~~~~d~~~-~~~~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~ 211 (275)
T 1yb2_A 162 GNVRTSRSDIAD-FISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYL 211 (275)
T ss_dssp TTEEEECSCTTT-CCCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred CcEEEEECchhc-cCcCCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence 479999999877 455678999998 45677889999999999999999765
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-14 Score=117.37 Aligned_cols=110 Identities=18% Similarity=0.176 Sum_probs=92.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
...+.+...+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++....++
T Consensus 22 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-------------------~~~v~~vD~~~~~~~~a~~~~~~~~~ 82 (183)
T 2yxd_A 22 EIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKR-------------------CKFVYAIDYLDGAIEVTKQNLAKFNI 82 (183)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTT-------------------SSEEEEEECSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhc-------------------CCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence 34455666777777889999999999999998882 38999999999999999999988776
Q ss_pred CCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 150 PDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+++.+..+|+.+ ++++++||+|++..+ .+...+++++.++ |||.+++..
T Consensus 83 --~~~~~~~~d~~~-~~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~ 131 (183)
T 2yxd_A 83 --KNCQIIKGRAED-VLDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANT 131 (183)
T ss_dssp --CSEEEEESCHHH-HGGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEE
T ss_pred --CcEEEEECCccc-cccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEe
Confidence 379999999877 556678999999888 5678899999998 999999765
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-15 Score=121.55 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=91.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..++... ..+++++|+++.+++.++++....++ ++++++.+|+
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~------------------~~~v~~vD~~~~~~~~a~~~~~~~~~--~~v~~~~~d~ 102 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRG------------------AASVLFVESDQRSAAVIARNIEALGL--SGATLRRGAV 102 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT------------------CSEEEEEECCHHHHHHHHHHHHHHTC--SCEEEEESCH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCC------------------CCeEEEEECCHHHHHHHHHHHHHcCC--CceEEEEccH
Confidence 457899999999999999877752 36899999999999999999988776 4899999998
Q ss_pred ccCC--CCCCCeeEEEeccccccc-cCHHHHHHHHHh--hccCCcEEEEEecc
Q 036563 162 EALC--FEDSTMDGYTIAFGIRNV-THIEKALAEAYR--VLKRGGRFLCLELS 209 (288)
Q Consensus 162 ~~~~--~~~~~~D~v~~~~~l~~~-~~~~~~l~~~~~--~L~pgG~l~i~~~~ 209 (288)
.+.. +++++||+|+++..+++. .+...+++.+.+ +|+|||.+++....
T Consensus 103 ~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 103 AAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp HHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred HHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 8763 346789999999887765 567889999999 99999999975443
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=5.9e-15 Score=124.39 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=92.7
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|..+..+++.++ ++.+++++|+++.+++.+++++...++. ++++++.+|+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~----------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~ 119 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQ----------------PGARLLTMEINPDCAAITQQMLNFAGLQ-DKVTILNGAS 119 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSC----------------TTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCH
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCC----------------CCCEEEEEeCChHHHHHHHHHHHHcCCC-CceEEEECCH
Confidence 4567999999999999999998753 3689999999999999999999888775 5799999998
Q ss_pred ccC-CC-C----CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCCh
Q 036563 162 EAL-CF-E----DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDI 213 (288)
Q Consensus 162 ~~~-~~-~----~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 213 (288)
.+. +. . .++||+|++....++..+...++..+ ++|+|||.+++.+...+..
T Consensus 120 ~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~ 176 (221)
T 3u81_A 120 QDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPGT 176 (221)
T ss_dssp HHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCCC
T ss_pred HHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcch
Confidence 552 22 2 26899999988777766666778877 9999999999766555443
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.8e-15 Score=133.69 Aligned_cols=115 Identities=12% Similarity=0.154 Sum_probs=95.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.+.+.+.......++.+|||+|||+|.++..+++.. ..+++++|+| .|++.++++....++
T Consensus 53 ~~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g------------------~~~v~gvD~s-~~l~~a~~~~~~~~~ 113 (349)
T 3q7e_A 53 TYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAG------------------ARKVIGIECS-SISDYAVKIVKANKL 113 (349)
T ss_dssp HHHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTT------------------CSEEEEEECS-THHHHHHHHHHHTTC
T ss_pred HHHHHHHhccccCCCCEEEEEeccchHHHHHHHHCC------------------CCEEEEECcH-HHHHHHHHHHHHcCC
Confidence 344455444444567899999999999999998872 3699999999 599999999988887
Q ss_pred CCCceEEEEcccccCCCCCCCeeEEEeccc---cccccCHHHHHHHHHhhccCCcEEE
Q 036563 150 PDKSLLWVEGDAEALCFEDSTMDGYTIAFG---IRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~---l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
. +++.++.+|+.++++++++||+|++... +.+..+...++.++.++|+|||.++
T Consensus 114 ~-~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 170 (349)
T 3q7e_A 114 D-HVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 170 (349)
T ss_dssp T-TTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred C-CcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEc
Confidence 6 6799999999998888889999999765 3444678899999999999999987
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-15 Score=126.33 Aligned_cols=107 Identities=18% Similarity=0.186 Sum_probs=85.1
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.+...++.+|||+|||+|.++..+++..+ +..+++++|+++.+++.+.+..... .++.+.
T Consensus 72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g----------------~~~~v~gvD~s~~~i~~~~~~a~~~----~~v~~~ 131 (233)
T 2ipx_A 72 QIHIKPGAKVLYLGAASGTTVSHVSDIVG----------------PDGLVYAVEFSHRSGRDLINLAKKR----TNIIPV 131 (233)
T ss_dssp CCCCCTTCEEEEECCTTSHHHHHHHHHHC----------------TTCEEEEECCCHHHHHHHHHHHHHC----TTEEEE
T ss_pred eecCCCCCEEEEEcccCCHHHHHHHHHhC----------------CCcEEEEEECCHHHHHHHHHHhhcc----CCeEEE
Confidence 44566788999999999999999999863 3579999999999888777766654 479999
Q ss_pred EcccccC---CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 158 EGDAEAL---CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 158 ~~d~~~~---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.+|+... ++.+++||+|++... .......++.++.++|+|||.+++.
T Consensus 132 ~~d~~~~~~~~~~~~~~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 132 IEDARHPHKYRMLIAMVDVIFADVA--QPDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp CSCTTCGGGGGGGCCCEEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EcccCChhhhcccCCcEEEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEE
Confidence 9999873 445678999998655 2222355688999999999999973
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-14 Score=119.31 Aligned_cols=111 Identities=16% Similarity=0.152 Sum_probs=83.7
Q ss_pred HHHHhhc---CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 73 DRLVSKL---NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 73 ~~~~~~l---~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
..+...+ ...++.+|||+|||+|.++..+++..+ +.++|+++|+++.|++...+.....
T Consensus 63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~----------------~~G~V~avD~s~~~l~~l~~~a~~r-- 124 (232)
T 3id6_C 63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIE----------------LNGKAYGVEFSPRVVRELLLVAQRR-- 124 (232)
T ss_dssp HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHT----------------TTSEEEEEECCHHHHHHHHHHHHHC--
T ss_pred HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhC----------------CCCEEEEEECcHHHHHHHHHHhhhc--
Confidence 3444444 477899999999999999999999875 5689999999999876554444333
Q ss_pred CCCceEEEEcccccCC---CCCCCeeEEEeccccccccCHHHH-HHHHHhhccCCcEEEEE
Q 036563 150 PDKSLLWVEGDAEALC---FEDSTMDGYTIAFGIRNVTHIEKA-LAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~-l~~~~~~L~pgG~l~i~ 206 (288)
.++.++.+|+.... ...++||+|+++... ++.... +..+.+.|||||.|++.
T Consensus 125 --~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 125 --PNIFPLLADARFPQSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp --TTEEEEECCTTCGGGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --CCeEEEEcccccchhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 58999999987642 224589999998654 444444 45666699999999975
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-15 Score=128.58 Aligned_cols=136 Identities=12% Similarity=0.034 Sum_probs=96.7
Q ss_pred HHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCce
Q 036563 47 NVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETR 126 (288)
Q Consensus 47 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (288)
+.|+..+..|........ ...+.+.++..+...++.+|||+|||+|.++..+++.. .+
T Consensus 12 ~~wd~~a~~f~~~~~~~~---~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g-------------------~~ 69 (261)
T 3iv6_A 12 EAWELIGNQFWTIGRVAA---RPSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERG-------------------AS 69 (261)
T ss_dssp HHHHTTTTHHHHTSCGGG---SCCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTT-------------------CE
T ss_pred hHHHHHHHHHHHHhhccc---cHHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcC-------------------CE
Confidence 456666666654322111 02345667778888888999999999999999998863 79
Q ss_pred EEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEE
Q 036563 127 IYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 127 v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~ 204 (288)
|+++|+|+.|++.++++..... ....+...+.......+++||+|+++.+++|+. +...+++++.++| |||.++
T Consensus 70 V~gvD~S~~ml~~Ar~~~~~~~---v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~ 145 (261)
T 3iv6_A 70 VTVFDFSQRMCDDLAEALADRC---VTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVR 145 (261)
T ss_dssp EEEEESCHHHHHHHHHHTSSSC---CEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEE
T ss_pred EEEEECCHHHHHHHHHHHHhcc---ceeeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEE
Confidence 9999999999999998875431 122332222200111246899999999999875 4567999999999 999999
Q ss_pred EEec
Q 036563 205 CLEL 208 (288)
Q Consensus 205 i~~~ 208 (288)
+...
T Consensus 146 lS~~ 149 (261)
T 3iv6_A 146 ASVK 149 (261)
T ss_dssp EEEE
T ss_pred EEec
Confidence 7543
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.6e-15 Score=125.57 Aligned_cols=156 Identities=10% Similarity=0.081 Sum_probs=104.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..++... +..+++++|+++.|++.++++....++. ++++++.+|+.
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~-----------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~ 126 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL-----------------NGWYFLATEVDDMCFNYAKKNVEQNNLS-DLIKVVKVPQK 126 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-----------------HCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTT
T ss_pred CCCEEEEeCCChhHHHHHHHHhC-----------------CCCeEEEEECCHHHHHHHHHHHHHcCCC-ccEEEEEcchh
Confidence 56799999999999999998876 3589999999999999999999887765 56999999976
Q ss_pred cC---CCC---CCCeeEEEecccccccc-C--------------HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHH
Q 036563 163 AL---CFE---DSTMDGYTIAFGIRNVT-H--------------IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYD 221 (288)
Q Consensus 163 ~~---~~~---~~~~D~v~~~~~l~~~~-~--------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 221 (288)
+. +++ +++||+|+++..+++.. + ...++.++.++|+|||.+.+.+. .......
T Consensus 127 ~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~------~~~~~~~ 200 (254)
T 2h00_A 127 TLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKR------IIHDSLQ 200 (254)
T ss_dssp CSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHH------HHHHHHH
T ss_pred hhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHH------HHHHHHh
Confidence 52 333 25899999997665432 1 12456788999999998875321 1111111
Q ss_pred HhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCC
Q 036563 222 YYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGG 278 (288)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 278 (288)
. +...+.+.... ......+++.++|+++||+.+++..+..|
T Consensus 201 ~-----l~~~g~~~~~~-----------~~~~~~~~~~~~l~~~Gf~~v~~~~~~~g 241 (254)
T 2h00_A 201 L-----KKRLRWYSCML-----------GKKCSLAPLKEELRIQGVPKVTYTEFCQG 241 (254)
T ss_dssp H-----GGGBSCEEEEE-----------SSTTSHHHHHHHHHHTTCSEEEEEEEEET
T ss_pred c-----ccceEEEEECC-----------CChhHHHHHHHHHHHcCCCceEEEEEecC
Confidence 1 11111111000 01123478899999999999998877655
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=126.03 Aligned_cols=112 Identities=15% Similarity=0.267 Sum_probs=94.7
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..++..+...++.+|||+|||+|.++..+++..+ +..+++++|+++.+++.++++....++. +
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~----------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~ 164 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVG----------------SSGKVFAYEKREEFAKLAESNLTKWGLI-E 164 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTT----------------TTCEEEEECCCHHHHHHHHHHHHHTTCG-G
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhC----------------CCcEEEEEECCHHHHHHHHHHHHHcCCC-C
Confidence 4566677778889999999999999999998853 4589999999999999999998877664 5
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
++.+..+|+.+. +++++||+|+++ .+++..+++++.++|+|||.+++..
T Consensus 165 ~v~~~~~d~~~~-~~~~~~D~V~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (277)
T 1o54_A 165 RVTIKVRDISEG-FDEKDVDALFLD-----VPDPWNYIDKCWEALKGGGRFATVC 213 (277)
T ss_dssp GEEEECCCGGGC-CSCCSEEEEEEC-----CSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEECCHHHc-ccCCccCEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEe
Confidence 799999998876 556789999983 4567789999999999999999765
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-14 Score=122.09 Aligned_cols=133 Identities=23% Similarity=0.232 Sum_probs=105.1
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....++. +.+..+|+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g-------------------~~v~gvDi~~~~v~~a~~n~~~~~~~---v~~~~~d~ 176 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLG-------------------GKALGVDIDPMVLPQAEANAKRNGVR---PRFLEGSL 176 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT-------------------CEEEEEESCGGGHHHHHHHHHHTTCC---CEEEESCH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhC-------------------CeEEEEECCHHHHHHHHHHHHHcCCc---EEEEECCh
Confidence 457899999999999999887753 49999999999999999998876542 88888887
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcc
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGS 241 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (288)
... ++.++||+|+++...++ ...++.++.++|+|||.+++.+....
T Consensus 177 ~~~-~~~~~fD~Vv~n~~~~~---~~~~l~~~~~~LkpgG~lils~~~~~------------------------------ 222 (254)
T 2nxc_A 177 EAA-LPFGPFDLLVANLYAEL---HAALAPRYREALVPGGRALLTGILKD------------------------------ 222 (254)
T ss_dssp HHH-GGGCCEEEEEEECCHHH---HHHHHHHHHHHEEEEEEEEEEEEEGG------------------------------
T ss_pred hhc-CcCCCCCEEEECCcHHH---HHHHHHHHHHHcCCCCEEEEEeeccC------------------------------
Confidence 663 34568999999765443 57789999999999999997543221
Q ss_pred hhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEE
Q 036563 242 YQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIH 283 (288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~ 283 (288)
+.+++.++++++||++++... .++.+.+.
T Consensus 223 ------------~~~~v~~~l~~~Gf~~~~~~~-~~~W~~l~ 251 (254)
T 2nxc_A 223 ------------RAPLVREAMAGAGFRPLEEAA-EGEWVLLA 251 (254)
T ss_dssp ------------GHHHHHHHHHHTTCEEEEEEE-ETTEEEEE
T ss_pred ------------CHHHHHHHHHHCCCEEEEEec-cCCeEEEE
Confidence 357888999999999988766 34555443
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-14 Score=138.51 Aligned_cols=125 Identities=14% Similarity=0.078 Sum_probs=101.4
Q ss_pred hhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 67 LHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 67 ~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
....+.+.+.+.+...++.+|||+|||+|.++..+++..+ +..+++++|+++.|++.|++++..
T Consensus 705 L~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~----------------p~a~VtGVDIS~emLe~AReRLa~ 768 (950)
T 3htx_A 705 LSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPT----------------SLQTIIGVDISPKGLARAAKMLHV 768 (950)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCC----------------CCCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCC----------------CCCeEEEEECCHHHHHHHHHHhhh
Confidence 3445555666666656788999999999999999988752 347999999999999999886653
Q ss_pred c------CCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHH--HHHHHHHhhccCCcEEEEEeccC
Q 036563 147 R------GYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIE--KALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 147 ~------~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
. +. +++.+.++|+..+++.+++||+|++..+++|+++.. .+++++.++|+|| .+++.....
T Consensus 769 ~lnAkr~gl--~nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 769 KLNKEACNV--KSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp HTTTTCSSC--SEEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred ccchhhcCC--CceEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 2 22 489999999999988888999999999999998755 5899999999999 766655443
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=119.02 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=95.6
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.....+.+.+...++.+|||+|||+|..+..+++.. .+++++|+++.+++.+++++...++
T Consensus 64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~-------------------~~v~~vD~~~~~~~~a~~~~~~~~~ 124 (210)
T 3lbf_A 64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLV-------------------QHVCSVERIKGLQWQARRRLKNLDL 124 (210)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-------------------SEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhC-------------------CEEEEEecCHHHHHHHHHHHHHcCC
Confidence 334566777777888999999999999999998873 7999999999999999999988776
Q ss_pred CCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 150 PDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+ ++.+..+|+.+.....++||+|++..+++++.+ ++.+.|+|||++++...
T Consensus 125 ~--~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 125 H--NVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVG 175 (210)
T ss_dssp C--SEEEEESCGGGCCGGGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEEC
T ss_pred C--ceEEEECCcccCCccCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEc
Confidence 4 799999999876655678999999999998875 57899999999997543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-15 Score=128.93 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=89.1
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...++. +++.++.+|+.
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~-------------------~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~ 137 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG-------------------MRVIAIDIDPVKIALARNNAEVYGIA-DKIEFICGDFL 137 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT-------------------CEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHH
T ss_pred CCCEEEECccccCHHHHHHHHcC-------------------CEEEEEECCHHHHHHHHHHHHHcCCC-cCeEEEECChH
Confidence 57899999999999999998863 79999999999999999999887764 48999999998
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEE
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
.++ ++++||+|+++..+++..+....+.++.++|+|||.++
T Consensus 138 ~~~-~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i 178 (241)
T 3gdh_A 138 LLA-SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEI 178 (241)
T ss_dssp HHG-GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHH
T ss_pred Hhc-ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeH
Confidence 776 45689999999999988777767888999999999865
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.1e-14 Score=126.88 Aligned_cols=116 Identities=15% Similarity=0.194 Sum_probs=96.8
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..+.+.+.+.+...++.+|||||||+|.++..+++.. ..+++++|+++ +++.++++....+
T Consensus 36 ~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g------------------~~~V~~vD~s~-~~~~a~~~~~~~~ 96 (348)
T 2y1w_A 36 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG------------------ARKIYAVEAST-MAQHAEVLVKSNN 96 (348)
T ss_dssp HHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTT------------------CSEEEEEECST-HHHHHHHHHHHTT
T ss_pred HHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCC------------------CCEEEEECCHH-HHHHHHHHHHHcC
Confidence 4456677777777778899999999999999888762 36999999996 8899999888877
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEE
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i 205 (288)
+. +++.++.+|+.+++++ ++||+|++...++++. +....+.++.++|+|||.+++
T Consensus 97 l~-~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 153 (348)
T 2y1w_A 97 LT-DRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 153 (348)
T ss_dssp CT-TTEEEEESCTTTCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred CC-CcEEEEEcchhhCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEE
Confidence 75 6899999999887655 5799999998877664 456788899999999999984
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=120.09 Aligned_cols=137 Identities=12% Similarity=0.135 Sum_probs=107.4
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+...+ .++.+|||+|||+|.++..+++... .+++++|+|+.+++.+++++...++. +
T Consensus 117 ~~l~~~~--~~~~~VLDlgcG~G~~~~~la~~~~------------------~~V~~vD~s~~~~~~a~~n~~~n~~~-~ 175 (278)
T 2frn_A 117 VRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGK------------------AKVIAIEKDPYTFKFLVENIHLNKVE-D 175 (278)
T ss_dssp HHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTC------------------CEEEEECCCHHHHHHHHHHHHHTTCT-T
T ss_pred HHHHHhC--CCCCEEEEecccCCHHHHHHHHhCC------------------CEEEEEECCHHHHHHHHHHHHHcCCC-c
Confidence 4444443 3578999999999999999998752 37999999999999999999888776 5
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
+++++.+|+.++.. +++||+|+++.. .+...++.++.++|+|||.+++.+++.....
T Consensus 176 ~v~~~~~D~~~~~~-~~~fD~Vi~~~p----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~------------------ 232 (278)
T 2frn_A 176 RMSAYNMDNRDFPG-ENIADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM------------------ 232 (278)
T ss_dssp TEEEECSCTTTCCC-CSCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT------------------
T ss_pred eEEEEECCHHHhcc-cCCccEEEECCc----hhHHHHHHHHHHHCCCCeEEEEEEeeccccc------------------
Confidence 69999999988765 678999998654 3446789999999999999998765431000
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEE
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVE 271 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 271 (288)
.-...+.+.+.++++||+...
T Consensus 233 ------------------~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 233 ------------------PREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ------------------TTTTHHHHHHHHHHTTCEEEE
T ss_pred ------------------cccHHHHHHHHHHHcCCeeEE
Confidence 001356788999999998766
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.1e-14 Score=121.30 Aligned_cols=114 Identities=12% Similarity=0.204 Sum_probs=92.2
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh---cCCCC
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE---RGYPD 151 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~~~~ 151 (288)
+...+...++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++.. .++.
T Consensus 28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~-----------------~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~- 89 (260)
T 2ozv_A 28 LASLVADDRACRIADLGAGAGAAGMAVAARL-----------------EKAEVTLYERSQEMAEFARRSLELPDNAAFS- 89 (260)
T ss_dssp HHHTCCCCSCEEEEECCSSSSHHHHHHHHHC-----------------TTEEEEEEESSHHHHHHHHHHTTSGGGTTTG-
T ss_pred HHHHhcccCCCEEEEeCChHhHHHHHHHHhC-----------------CCCeEEEEECCHHHHHHHHHHHHhhhhCCCc-
Confidence 3445556667899999999999999999986 458999999999999999999877 6664
Q ss_pred CceEEEEcccccC-------CCCCCCeeEEEeccccccc------------------cCHHHHHHHHHhhccCCcEEEEE
Q 036563 152 KSLLWVEGDAEAL-------CFEDSTMDGYTIAFGIRNV------------------THIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 152 ~~v~~~~~d~~~~-------~~~~~~~D~v~~~~~l~~~------------------~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+++.++.+|+.+. .+++++||+|+++..+... .+...+++.+.++|+|||.++++
T Consensus 90 ~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 90 ARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp GGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 5799999999876 2456789999998554322 23678899999999999999874
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-14 Score=117.02 Aligned_cols=114 Identities=9% Similarity=0.019 Sum_probs=92.2
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
+.+.+...++ ++.+|||+|||+|.++..++... |..+|+++|+|+.|++.+++++...+..
T Consensus 39 fY~~~~~~l~--~~~~VLDlGCG~GplAl~l~~~~-----------------p~a~~~A~Di~~~~leiar~~~~~~g~~ 99 (200)
T 3fzg_A 39 FYTYVFGNIK--HVSSILDFGCGFNPLALYQWNEN-----------------EKIIYHAYDIDRAEIAFLSSIIGKLKTT 99 (200)
T ss_dssp HHHHHHHHSC--CCSEEEEETCTTHHHHHHHHCSS-----------------CCCEEEEECSCHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHhhcC--CCCeEEEecCCCCHHHHHHHhcC-----------------CCCEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 3345555563 46799999999999999998886 5689999999999999999999887764
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.++++ .|.... .+.++||+|++..++|++++.+..+.++.+.|+|||.++-.+
T Consensus 100 -~~v~~--~d~~~~-~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 100 -IKYRF--LNKESD-VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp -SEEEE--ECCHHH-HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred -ccEEE--eccccc-CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 35666 454433 355789999999999999777778889999999999998543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-14 Score=124.62 Aligned_cols=151 Identities=22% Similarity=0.186 Sum_probs=107.2
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh--cCCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE--RGYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~~~~~v~~~~~ 159 (288)
.++.+|||||||+|.++..+++.. +..+++++|+++.+++.+++.+.. .+...++++++.+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-----------------~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~ 156 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG-----------------TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVG 156 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT-----------------TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC-----------------CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEEC
Confidence 456799999999999999998764 357999999999999999988742 1122268999999
Q ss_pred ccccCCC--CCCCeeEEEeccccccccCH----HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccc
Q 036563 160 DAEALCF--EDSTMDGYTIAFGIRNVTHI----EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGE 233 (288)
Q Consensus 160 d~~~~~~--~~~~~D~v~~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (288)
|+..... ++++||+|++....+..+.. ..+++++.++|+|||.+++...+....
T Consensus 157 D~~~~~~~~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~-------------------- 216 (304)
T 3bwc_A 157 DGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLD-------------------- 216 (304)
T ss_dssp CHHHHHHSSCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTC--------------------
T ss_pred cHHHHHHhccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccc--------------------
Confidence 9877643 46789999997765443322 678999999999999999753221000
Q ss_pred cccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee-----CCeeEEEEeee
Q 036563 234 LVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV-----GGVVAIHSGLK 287 (288)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~-----~~~~~~~~~~k 287 (288)
....+.+.+.|+++||..+...... .|...+..+.|
T Consensus 217 ------------------~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~~as~ 257 (304)
T 3bwc_A 217 ------------------LELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGTLVCSK 257 (304)
T ss_dssp ------------------HHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEEEEEES
T ss_pred ------------------hHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEEEEEeC
Confidence 0024678889999999988776432 34445555543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=116.83 Aligned_cols=147 Identities=13% Similarity=0.053 Sum_probs=113.6
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+...++ ++.+|+|||||+|.++..+++.. +..+++++|+++.+++.|++++...++. +++
T Consensus 15 i~~~v~--~g~~VlDIGtGsG~l~i~la~~~-----------------~~~~V~AvDi~~~al~~A~~N~~~~gl~-~~I 74 (230)
T 3lec_A 15 VANYVP--KGARLLDVGSDHAYLPIFLLQMG-----------------YCDFAIAGEVVNGPYQSALKNVSEHGLT-SKI 74 (230)
T ss_dssp HHTTSC--TTEEEEEETCSTTHHHHHHHHTT-----------------CEEEEEEEESSHHHHHHHHHHHHHTTCT-TTE
T ss_pred HHHhCC--CCCEEEEECCchHHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CcE
Confidence 444443 46799999999999999999875 3578999999999999999999999886 689
Q ss_pred EEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccccc
Q 036563 155 LWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGEL 234 (288)
Q Consensus 155 ~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (288)
.+..+|..+...+.++||+|++.+.-. .-...+|....+.|+++|+|++...
T Consensus 75 ~~~~gD~l~~~~~~~~~D~IviaGmGg--~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------- 126 (230)
T 3lec_A 75 DVRLANGLSAFEEADNIDTITICGMGG--RLIADILNNDIDKLQHVKTLVLQPN-------------------------- 126 (230)
T ss_dssp EEEECSGGGGCCGGGCCCEEEEEEECH--HHHHHHHHHTGGGGTTCCEEEEEES--------------------------
T ss_pred EEEECchhhccccccccCEEEEeCCch--HHHHHHHHHHHHHhCcCCEEEEECC--------------------------
Confidence 999999877654444799988655432 2357789999999999999987431
Q ss_pred ccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee--CCeeEEEEeee
Q 036563 235 VAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV--GGVVAIHSGLK 287 (288)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~--~~~~~~~~~~k 287 (288)
...+.++++|.+.||.+++-.-.. +-++-+..+.+
T Consensus 127 ------------------~~~~~lr~~L~~~Gf~i~~E~lv~e~~~~Yeii~~~~ 163 (230)
T 3lec_A 127 ------------------NREDDLRKWLAANDFEIVAEDILTENDKRYEILVVKH 163 (230)
T ss_dssp ------------------SCHHHHHHHHHHTTEEEEEEEEEEC--CEEEEEEEEE
T ss_pred ------------------CChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEe
Confidence 145788999999999988866432 34555555543
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=117.05 Aligned_cols=106 Identities=22% Similarity=0.180 Sum_probs=84.8
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.+...++.+|||+|||+|.++..+++..+ +..+++++|+++.+++.++++.... +++.++
T Consensus 68 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~----------------~~~~v~~vD~s~~~~~~~~~~~~~~----~~v~~~ 127 (227)
T 1g8a_A 68 NFPIKPGKSVLYLGIASGTTASHVSDIVG----------------WEGKIFGIEFSPRVLRELVPIVEER----RNIVPI 127 (227)
T ss_dssp CCCCCTTCEEEEETTTSTTHHHHHHHHHC----------------TTSEEEEEESCHHHHHHHHHHHSSC----TTEEEE
T ss_pred hcCCCCCCEEEEEeccCCHHHHHHHHHhC----------------CCeEEEEEECCHHHHHHHHHHHhcc----CCCEEE
Confidence 34466788999999999999999998863 3579999999999999998887654 489999
Q ss_pred EcccccCC---CCCCCeeEEEeccccccccCH-HHHHHHHHhhccCCcEEEEE
Q 036563 158 EGDAEALC---FEDSTMDGYTIAFGIRNVTHI-EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 158 ~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~-~~~l~~~~~~L~pgG~l~i~ 206 (288)
.+|+.... ...++||+|++... .++. ..++.++.++|+|||.+++.
T Consensus 128 ~~d~~~~~~~~~~~~~~D~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 128 LGDATKPEEYRALVPKVDVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp ECCTTCGGGGTTTCCCEEEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EccCCCcchhhcccCCceEEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 99987632 12358999998665 2333 34599999999999999976
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-14 Score=125.06 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=95.7
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+...+...++.+|||+|||+|..+..+++..+ +..+++++|+++.+++.+++++...++.
T Consensus 108 ~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~----------------~~~~v~avD~s~~~l~~a~~~~~~~g~~-- 169 (315)
T 1ixk_A 108 MYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMR----------------NDGVIYAFDVDENRLRETRLNLSRLGVL-- 169 (315)
T ss_dssp HHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTT----------------TCSEEEEECSCHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhC----------------CCCEEEEEcCCHHHHHHHHHHHHHhCCC--
Confidence 3445667778889999999999999999998863 3479999999999999999999888774
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccc------cccccCH----------------HHHHHHHHhhccCCcEEEEEeccC
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFG------IRNVTHI----------------EKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~------l~~~~~~----------------~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
++.++.+|+..++...++||+|++... +++.++. ..+|+++.++|||||.+++...+.
T Consensus 170 ~v~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 170 NVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp SEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred eEEEEECChhhcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 799999999887544568999998543 3222221 478999999999999999876654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=128.69 Aligned_cols=115 Identities=15% Similarity=0.245 Sum_probs=93.8
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.+.+.+.+.+...++.+|||+|||+|.++..+++.. ..+++++|++ .|++.++++....++
T Consensus 25 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g------------------~~~v~~vD~s-~~~~~a~~~~~~~~~ 85 (328)
T 1g6q_1 25 SYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG------------------AKHVIGVDMS-SIIEMAKELVELNGF 85 (328)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTC------------------CSEEEEEESS-THHHHHHHHHHHTTC
T ss_pred HHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCC------------------CCEEEEEChH-HHHHHHHHHHHHcCC
Confidence 344455444444567899999999999999888762 3689999999 599999999888877
Q ss_pred CCCceEEEEcccccCCCCCCCeeEEEeccc---cccccCHHHHHHHHHhhccCCcEEE
Q 036563 150 PDKSLLWVEGDAEALCFEDSTMDGYTIAFG---IRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~---l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
. +++.++.+|+.+++++.++||+|++... +.+...+..++.++.++|+|||.++
T Consensus 86 ~-~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 86 S-DKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp T-TTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred C-CCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 6 6899999999988877778999998754 3444567889999999999999997
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=121.22 Aligned_cols=106 Identities=15% Similarity=0.088 Sum_probs=88.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||||||+|.++..+++.. +...++|+|+++.+++.++++....++. ++.++.+|+.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~-----------------p~~~v~giD~s~~~l~~a~~~~~~~~l~--nv~~~~~Da~ 94 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDR-----------------PEQDFLGIEVHSPGVGACLASAHEEGLS--NLRVMCHDAV 94 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHC-----------------TTSEEEEECSCHHHHHHHHHHHHHTTCS--SEEEECSCHH
T ss_pred CCCeEEEEeeeChHHHHHHHHHC-----------------CCCeEEEEEecHHHHHHHHHHHHHhCCC--cEEEEECCHH
Confidence 45689999999999999999886 4689999999999999999998887764 7999999988
Q ss_pred cC-C--CCCCCeeEEEeccccccccCH--------HHHHHHHHhhccCCcEEEEEe
Q 036563 163 AL-C--FEDSTMDGYTIAFGIRNVTHI--------EKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 163 ~~-~--~~~~~~D~v~~~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.+ + +++++||.|++++...+.... ..+++++.++|||||.+++..
T Consensus 95 ~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 95 EVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp HHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 74 3 677899999998654333211 259999999999999999754
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.9e-14 Score=118.08 Aligned_cols=104 Identities=19% Similarity=0.159 Sum_probs=80.7
Q ss_pred cCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 79 LNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
+...++.+|||+|||+|..+..+++.. +..+|+++|+|+.|++.+.+..... .++.++.
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~-----------------~~~~V~gvD~s~~~l~~~~~~a~~~----~~v~~~~ 111 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIV-----------------DEGIIYAVEYSAKPFEKLLELVRER----NNIIPLL 111 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHT-----------------TTSEEEEECCCHHHHHHHHHHHHHC----SSEEEEC
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHc-----------------CCCEEEEEECCHHHHHHHHHHHhcC----CCeEEEE
Confidence 445678899999999999999998886 2478999999999887666555443 4788888
Q ss_pred cccccC----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 159 GDAEAL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 159 ~d~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+|+... ++. ++||+|+++.. +..+...++++++++|||||.+++.
T Consensus 112 ~d~~~~~~~~~~~-~~fD~V~~~~~--~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 112 FDASKPWKYSGIV-EKVDLIYQDIA--QKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp SCTTCGGGTTTTC-CCEEEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCCchhhcccc-cceeEEEEecc--ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 888763 333 68999998732 2223445699999999999999975
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=119.27 Aligned_cols=107 Identities=13% Similarity=0.109 Sum_probs=86.7
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..++... ..+++++|+|+.|++.+++++...++..+++.++.+|+.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~------------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~ 114 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ------------------AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSL 114 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT------------------CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHH
T ss_pred CCCeEEEcCCccCHHHHHHHHcc------------------CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHH
Confidence 46799999999999999877663 268999999999999999999887652137999999987
Q ss_pred cCCC--CCCC-eeEEEeccccccccCHHHHHHHH--HhhccCCcEEEEEec
Q 036563 163 ALCF--EDST-MDGYTIAFGIRNVTHIEKALAEA--YRVLKRGGRFLCLEL 208 (288)
Q Consensus 163 ~~~~--~~~~-~D~v~~~~~l~~~~~~~~~l~~~--~~~L~pgG~l~i~~~ 208 (288)
+... ++++ ||+|+++..++ ..+...+++.+ .++|+|||.+++...
T Consensus 115 ~~~~~~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~ 164 (201)
T 2ift_A 115 DFLKQPQNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKPNALIYVETE 164 (201)
T ss_dssp HHTTSCCSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHhhccCCCCCEEEECCCCC-CccHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 6532 3568 99999988854 55677888888 678999999987543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=120.66 Aligned_cols=114 Identities=18% Similarity=0.304 Sum_probs=95.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc-C-CC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER-G-YP 150 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~-~~ 150 (288)
..++..+...++.+|||+|||+|.++..+++..+ +..+++++|+++.+++.++++.... + +.
T Consensus 89 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~----------------~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~ 152 (280)
T 1i9g_A 89 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVG----------------PAGQVISYEQRADHAEHARRNVSGCYGQPP 152 (280)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC----------------TTSEEEEECSCHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhC----------------CCCEEEEEeCCHHHHHHHHHHHHHhcCCCC
Confidence 4566777778888999999999999999998753 4589999999999999999988765 3 22
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.++.+..+|+.+.++++++||+|+++ .+++..+++++.++|+|||.+++...
T Consensus 153 -~~v~~~~~d~~~~~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 153 -DNWRLVVSDLADSELPDGSVDRAVLD-----MLAPWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp -TTEEEECSCGGGCCCCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred -CcEEEEECchHhcCCCCCceeEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 58999999998887767789999983 34677899999999999999998654
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-14 Score=126.61 Aligned_cols=114 Identities=18% Similarity=0.319 Sum_probs=88.4
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC----
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG---- 148 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---- 148 (288)
..++..+...++.+|||+|||+|.++..+++..+ +..+++++|+++.+++.++++....+
T Consensus 95 ~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g----------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 158 (336)
T 2b25_A 95 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVG----------------SQGRVISFEVRKDHHDLAKKNYKHWRDSWK 158 (336)
T ss_dssp HHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHC----------------TTCEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhC----------------CCceEEEEeCCHHHHHHHHHHHHHhhcccc
Confidence 4566667777889999999999999999998864 45899999999999999999887532
Q ss_pred ------CCCCceEEEEcccccC--CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 149 ------YPDKSLLWVEGDAEAL--CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 149 ------~~~~~v~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.. .++.+..+|+.+. ++++++||+|+++. .++..+++++.++|+|||.+++...
T Consensus 159 ln~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 159 LSHVEEWP-DNVDFIHKDISGATEDIKSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp TTCSSCCC-CCEEEEESCTTCCC-------EEEEEECS-----SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred cccccccC-CceEEEECChHHcccccCCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 11 4799999999876 45566899999854 3444589999999999999997554
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-14 Score=122.40 Aligned_cols=163 Identities=19% Similarity=0.207 Sum_probs=111.7
Q ss_pred HHHHHHHHhhcCC-CCCCeEEEecCCc--cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh
Q 036563 69 RLWKDRLVSKLNP-FPGMKHLDVAGGT--GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL 145 (288)
Q Consensus 69 ~~~~~~~~~~l~~-~~~~~vLDiG~G~--G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 145 (288)
+.|....++.+.. ....+|||||||+ +..+..+++... +.++|+++|.|+.|+..+++++.
T Consensus 63 r~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~----------------P~arVv~VD~sp~mLa~Ar~~l~ 126 (277)
T 3giw_A 63 RDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVA----------------PESRVVYVDNDPIVLTLSQGLLA 126 (277)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHC----------------TTCEEEEEECCHHHHHTTHHHHC
T ss_pred HHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHC----------------CCCEEEEEeCChHHHHHHHHHhc
Confidence 4455555565542 2335899999997 434455555432 57899999999999999999886
Q ss_pred hcCCCCCceEEEEcccccCCC----C--CCCee-----EEEeccccccccC---HHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 146 ERGYPDKSLLWVEGDAEALCF----E--DSTMD-----GYTIAFGIRNVTH---IEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 146 ~~~~~~~~v~~~~~d~~~~~~----~--~~~~D-----~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
..+. .++.++++|+.+... + ...|| .|+++.+|||+++ +..+++++.+.|+|||+|++.+.+..
T Consensus 127 ~~~~--~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 127 STPE--GRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp CCSS--SEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred cCCC--CcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 5421 479999999987520 1 23455 6889999999987 56899999999999999999887765
Q ss_pred ChH-HHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEE
Q 036563 212 DIP-VFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVE 271 (288)
Q Consensus 212 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 271 (288)
..+ ....+...+...-.+ ..+.+.+++..+|. ||+.++
T Consensus 205 ~~p~~~~~~~~~~~~~g~p--------------------~~~rs~~ei~~~f~--Glelve 243 (277)
T 3giw_A 205 FAPQEVGRVAREYAARNMP--------------------MRLRTHAEAEEFFE--GLELVE 243 (277)
T ss_dssp TSHHHHHHHHHHHHHTTCC--------------------CCCCCHHHHHHTTT--TSEECT
T ss_pred CCHHHHHHHHHHHHhcCCC--------------------CccCCHHHHHHHhC--CCcccC
Confidence 332 223333322100000 12458899999994 998654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.6e-14 Score=117.23 Aligned_cols=115 Identities=15% Similarity=0.200 Sum_probs=92.4
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
...+....+..++.+|||+|||+|..+..+++..+ ++++++++|+++.+++.+++++...++..
T Consensus 45 l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~----------------~~~~v~~vD~~~~~~~~a~~~~~~~g~~~ 108 (221)
T 3dr5_A 45 LTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLA----------------DNTTLTCIDPESEHQRQAKALFREAGYSP 108 (221)
T ss_dssp HHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSC----------------TTSEEEEECSCHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 34455555544456999999999999999999863 46899999999999999999998877642
Q ss_pred CceEEEEcccccC--CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 152 KSLLWVEGDAEAL--CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 152 ~~v~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
++++++.+|+.+. .+++++||+|++.... .+...+++++.++|+|||.+++
T Consensus 109 ~~i~~~~gda~~~l~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~LkpGG~lv~ 161 (221)
T 3dr5_A 109 SRVRFLLSRPLDVMSRLANDSYQLVFGQVSP---MDLKALVDAAWPLLRRGGALVL 161 (221)
T ss_dssp GGEEEECSCHHHHGGGSCTTCEEEEEECCCT---TTHHHHHHHHHHHEEEEEEEEE
T ss_pred CcEEEEEcCHHHHHHHhcCCCcCeEEEcCcH---HHHHHHHHHHHHHcCCCcEEEE
Confidence 4799999998664 2336789999987543 3567789999999999999996
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.9e-14 Score=118.12 Aligned_cols=112 Identities=13% Similarity=0.134 Sum_probs=91.6
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+...+...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...++. ++
T Consensus 62 ~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-----------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~ 123 (232)
T 3ntv_A 62 LIKQLIRMNNVKNILEIGTAIGYSSMQFASIS-----------------DDIHVTTIERNETMIQYAKQNLATYHFE-NQ 123 (232)
T ss_dssp HHHHHHHHHTCCEEEEECCSSSHHHHHHHTTC-----------------TTCEEEEEECCHHHHHHHHHHHHHTTCT-TT
T ss_pred HHHHHHhhcCCCEEEEEeCchhHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-Cc
Confidence 33344444457899999999999999999854 4589999999999999999999888775 68
Q ss_pred eEEEEcccccC-C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 154 LLWVEGDAEAL-C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 154 v~~~~~d~~~~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++++.+|+.+. + ..+++||+|++... ..+...+++.+.++|+|||.+++-
T Consensus 124 v~~~~~d~~~~~~~~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 124 VRIIEGNALEQFENVNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp EEEEESCGGGCHHHHTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEECCHHHHHHhhccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEe
Confidence 99999998764 3 33578999997654 345788999999999999999863
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-13 Score=114.65 Aligned_cols=145 Identities=17% Similarity=0.115 Sum_probs=109.7
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+...++ ++.+|+|||||+|.++..++... +..+++++|+++.+++.|++++...++. +++
T Consensus 9 l~~~v~--~g~~VlDIGtGsG~l~i~la~~~-----------------~~~~V~avDi~~~al~~A~~N~~~~gl~-~~i 68 (225)
T 3kr9_A 9 VASFVS--QGAILLDVGSDHAYLPIELVERG-----------------QIKSAIAGEVVEGPYQSAVKNVEAHGLK-EKI 68 (225)
T ss_dssp HHTTSC--TTEEEEEETCSTTHHHHHHHHTT-----------------SEEEEEEEESSHHHHHHHHHHHHHTTCT-TTE
T ss_pred HHHhCC--CCCEEEEeCCCcHHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-ceE
Confidence 344443 46799999999999999999875 4579999999999999999999999886 689
Q ss_pred EEEEccccc-CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccc
Q 036563 155 LWVEGDAEA-LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGE 233 (288)
Q Consensus 155 ~~~~~d~~~-~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (288)
++..+|... ++. .++||+|+....-. .-...+|..+...|+++|++++...
T Consensus 69 ~~~~~d~l~~l~~-~~~~D~IviaG~Gg--~~i~~Il~~~~~~L~~~~~lVlq~~------------------------- 120 (225)
T 3kr9_A 69 QVRLANGLAAFEE-TDQVSVITIAGMGG--RLIARILEEGLGKLANVERLILQPN------------------------- 120 (225)
T ss_dssp EEEECSGGGGCCG-GGCCCEEEEEEECH--HHHHHHHHHTGGGCTTCCEEEEEES-------------------------
T ss_pred EEEECchhhhccc-CcCCCEEEEcCCCh--HHHHHHHHHHHHHhCCCCEEEEECC-------------------------
Confidence 999999854 332 23699988755421 1257789999999999999986321
Q ss_pred cccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe--eCCeeEEEEee
Q 036563 234 LVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL--VGGVVAIHSGL 286 (288)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~--~~~~~~~~~~~ 286 (288)
...+.++++|.+.||.+++-.-. .+-++-+..+.
T Consensus 121 -------------------~~~~~vr~~L~~~Gf~i~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 121 -------------------NREDDLRIWLQDHGFQIVAESILEEAGKFYEILVVE 156 (225)
T ss_dssp -------------------SCHHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred -------------------CCHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEE
Confidence 13577889999999998886533 23345554443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-13 Score=114.63 Aligned_cols=114 Identities=20% Similarity=0.235 Sum_probs=93.9
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
....+.+.+...++.+|||+|||+|.++..+++..+ +..+++++|+++.+++.++++....+++
T Consensus 65 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~----------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~ 128 (215)
T 2yxe_A 65 MVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVG----------------EDGLVVSIERIPELAEKAERTLRKLGYD 128 (215)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC----------------TTSEEEEEESCHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhC----------------CCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 345666777777888999999999999999998863 3479999999999999999998877664
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
++.+..+|+.......++||+|++..+++++. +++.++|+|||.+++...
T Consensus 129 --~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 129 --NVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp --TEEEEESCGGGCCGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred --CeEEEECCcccCCCCCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEEC
Confidence 69999999854332356899999999999876 478999999999997643
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-13 Score=123.23 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=116.5
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+.....++... ..++.+|||+|||+|.++..++... +..+++++|+++.|++.|++++...+
T Consensus 204 ~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~-----------------~~~~v~g~Dis~~~l~~A~~n~~~~g 265 (373)
T 3tm4_A 204 ASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRR-----------------YSGEIIGIEKYRKHLIGAEMNALAAG 265 (373)
T ss_dssp HHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTT-----------------CCSCEEEEESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhC-----------------CCCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 34445566666 6678899999999999999998875 23589999999999999999998887
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEecccccccc-------C-HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHH
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT-------H-IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELY 220 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~-------~-~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~ 220 (288)
+. +++++.++|+.+++.++++||+|+++..+.... + ...+++.+.++| +|.++++..
T Consensus 266 l~-~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~------------ 330 (373)
T 3tm4_A 266 VL-DKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT------------ 330 (373)
T ss_dssp CG-GGCEEEECCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES------------
T ss_pred CC-CceEEEECChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC------------
Confidence 75 589999999999887778899999987754321 1 156788888888 455444321
Q ss_pred HHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEee
Q 036563 221 DYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGL 286 (288)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~ 286 (288)
+.+.+++.+++.||+......+..|........
T Consensus 331 ---------------------------------~~~~~~~~~~~~G~~~~~~~~~~nG~l~~~~~~ 363 (373)
T 3tm4_A 331 ---------------------------------EKKAIEEAIAENGFEIIHHRVIGHGGLMVHLYV 363 (373)
T ss_dssp ---------------------------------CHHHHHHHHHHTTEEEEEEEEEEETTEEEEEEE
T ss_pred ---------------------------------CHHHHHHHHHHcCCEEEEEEEEEcCCEEEEEEe
Confidence 456777899999999999888877765555443
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-13 Score=116.05 Aligned_cols=147 Identities=12% Similarity=0.040 Sum_probs=111.5
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+...++ ++.+|||||||+|.++..+++.. +..+++++|+++.+++.|++++...++. ++
T Consensus 14 ~i~~~v~--~g~~VlDIGtGsG~l~i~la~~~-----------------~~~~V~avDi~~~al~~A~~N~~~~gl~-~~ 73 (244)
T 3gnl_A 14 KVASYIT--KNERIADIGSDHAYLPCFAVKNQ-----------------TASFAIAGEVVDGPFQSAQKQVRSSGLT-EQ 73 (244)
T ss_dssp HHHTTCC--SSEEEEEETCSTTHHHHHHHHTT-----------------SEEEEEEEESSHHHHHHHHHHHHHTTCT-TT
T ss_pred HHHHhCC--CCCEEEEECCccHHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-ce
Confidence 3444444 46799999999999999999875 3578999999999999999999998886 67
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccc
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGE 233 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (288)
+.+..+|..+...+.++||+|++...-. .-...+|....+.|+++++|++...
T Consensus 74 I~v~~gD~l~~~~~~~~~D~IviagmGg--~lI~~IL~~~~~~L~~~~~lIlq~~------------------------- 126 (244)
T 3gnl_A 74 IDVRKGNGLAVIEKKDAIDTIVIAGMGG--TLIRTILEEGAAKLAGVTKLILQPN------------------------- 126 (244)
T ss_dssp EEEEECSGGGGCCGGGCCCEEEEEEECH--HHHHHHHHHTGGGGTTCCEEEEEES-------------------------
T ss_pred EEEEecchhhccCccccccEEEEeCCch--HHHHHHHHHHHHHhCCCCEEEEEcC-------------------------
Confidence 9999999877654444699988754422 2256789999999999999997431
Q ss_pred cccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe--eCCeeEEEEee
Q 036563 234 LVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL--VGGVVAIHSGL 286 (288)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~--~~~~~~~~~~~ 286 (288)
...+.++++|.+.||.+++-.-. .+-++-+..+.
T Consensus 127 -------------------~~~~~lr~~L~~~Gf~i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 127 -------------------IAAWQLREWSEQNNWLITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp -------------------SCHHHHHHHHHHHTEEEEEEEEEEETTEEEEEEEEE
T ss_pred -------------------CChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEE
Confidence 13578889999999998776533 23344444443
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-13 Score=122.94 Aligned_cols=120 Identities=23% Similarity=0.273 Sum_probs=99.0
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+.....++......++.+|||+|||+|.++..++...+ +..+++++|+++.+++.+++++...+
T Consensus 189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~----------------~~~~v~g~Di~~~~i~~a~~n~~~~g 252 (354)
T 3tma_A 189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLG----------------PTSPVYAGDLDEKRLGLAREAALASG 252 (354)
T ss_dssp HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHC----------------TTSCEEEEESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhC----------------CCceEEEEECCHHHHHHHHHHHHHcC
Confidence 34556667777777888999999999999999999862 35899999999999999999999887
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccccccC--------HHHHHHHHHhhccCCcEEEEE
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--------IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+. ++++.++|+.+++.+...||+|+++..+..... ...+++++.++|+|||.+++.
T Consensus 253 ~~--~i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~ 316 (354)
T 3tma_A 253 LS--WIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL 316 (354)
T ss_dssp CT--TCEEEECCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred CC--ceEEEeCChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 74 899999999998766677999999877543211 267899999999999999975
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-14 Score=115.11 Aligned_cols=117 Identities=12% Similarity=0.110 Sum_probs=91.2
Q ss_pred HHHHhhcC-CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 73 DRLVSKLN-PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 73 ~~~~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
+.+...+. ..++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++...++.
T Consensus 20 ~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~------------------~~~v~~vD~~~~~~~~a~~~~~~~~~~- 80 (177)
T 2esr_A 20 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG------------------MSAAVLVEKNRKAQAIIQDNIIMTKAE- 80 (177)
T ss_dssp HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT------------------CCEEEEECCCHHHHHHHHHHHHTTTCG-
T ss_pred HHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcC------------------CCEEEEEECCHHHHHHHHHHHHHcCCC-
Confidence 44555554 4567899999999999999888762 379999999999999999998877664
Q ss_pred CceEEEEcccccC-CCCCCCeeEEEeccccccccCHHHHHHHHH--hhccCCcEEEEEecc
Q 036563 152 KSLLWVEGDAEAL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAY--RVLKRGGRFLCLELS 209 (288)
Q Consensus 152 ~~v~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~ 209 (288)
+++.++.+|+.+. +...++||+|+++..++ .......++.+. ++|+|||.+++....
T Consensus 81 ~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 81 NRFTLLKMEAERAIDCLTGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp GGEEEECSCHHHHHHHBCSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CceEEEECcHHHhHHhhcCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 5799999998773 33345799999987653 234566777776 999999999975443
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=125.27 Aligned_cols=123 Identities=13% Similarity=0.120 Sum_probs=98.1
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+.+.+.+...++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++....++.
T Consensus 210 ~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~-----------------p~~~V~gvD~s~~al~~Ar~n~~~ngl~ 272 (375)
T 4dcm_A 210 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-----------------PQAKVVFVDESPMAVASSRLNVETNMPE 272 (375)
T ss_dssp HHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHC-----------------TTCEEEEEESCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHC-----------------CCCEEEEEECcHHHHHHHHHHHHHcCCC
Confidence 34567788877777899999999999999999986 4689999999999999999998877653
Q ss_pred C-CceEEEEcccccCCCCCCCeeEEEeccccccccC-----HHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 151 D-KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH-----IEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 151 ~-~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
+ .++++..+|+.+ ++++++||+|+++..+++... ...+++++.++|+|||.++++.....
T Consensus 273 ~~~~v~~~~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~ 338 (375)
T 4dcm_A 273 ALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL 338 (375)
T ss_dssp GGGGEEEEECSTTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred cCceEEEEechhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence 1 258889999876 456678999999999875321 34689999999999999998755443
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-13 Score=115.29 Aligned_cols=108 Identities=12% Similarity=0.055 Sum_probs=89.1
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..++.+|||||||+|..+..+++.++ +..+++++|+++.+++.+++++...++. +++++..+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~----------------~~~~v~~vD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d 123 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELP----------------ADGQLLTLEADAHHAQVARENLQLAGVD-QRVTLREGP 123 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSC----------------TTCEEEEEECCHHHHHHHHHHHHHTTCT-TTEEEEESC
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcC
Confidence 34568999999999999999999863 3689999999999999999999888876 689999999
Q ss_pred cccC-CCC--CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 161 AEAL-CFE--DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 161 ~~~~-~~~--~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+.+. +.. .++||+|++... ..+...+++++.++|+|||.+++.+.
T Consensus 124 ~~~~l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 124 ALQSLESLGECPAFDLIFIDAD---KPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp HHHHHHTCCSCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred HHHHHHhcCCCCCeEEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 8663 322 348999998653 34567899999999999999987443
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=122.21 Aligned_cols=114 Identities=22% Similarity=0.283 Sum_probs=95.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
...+.+.+.+...++.+|||+|||+|.++..+++... ...+++++|+++.+++.++++....++
T Consensus 62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~----------------~~~~v~gvD~s~~~~~~a~~~~~~~g~ 125 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVG----------------EKGLVVSVEYSRKICEIAKRNVERLGI 125 (317)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC----------------TTCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcC----------------CCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 3445667777778889999999999999999998862 236799999999999999999888776
Q ss_pred CCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 150 PDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
. ++.+..+|+.+.....++||+|++..+++++. +++.+.|+|||.+++..
T Consensus 126 ~--~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 126 E--NVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp C--SEEEEESCGGGCCGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEB
T ss_pred C--CeEEEECChhhccccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEE
Confidence 4 69999999987544557899999999999876 56789999999999864
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.52 E-value=7.7e-14 Score=113.76 Aligned_cols=116 Identities=17% Similarity=0.156 Sum_probs=90.5
Q ss_pred HHHHhhcC-CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 73 DRLVSKLN-PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 73 ~~~~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
+.+...+. ..++.+|||+|||+|.++..+++. +..+++++|+++.+++.++++....++.
T Consensus 33 ~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~------------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~- 93 (187)
T 2fhp_A 33 ESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR------------------GMDKSICIEKNFAALKVIKENIAITKEP- 93 (187)
T ss_dssp HHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT------------------TCSEEEEEESCHHHHHHHHHHHHHHTCG-
T ss_pred HHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc------------------CCCEEEEEECCHHHHHHHHHHHHHhCCC-
Confidence 34444443 246779999999999999988775 2479999999999999999998877654
Q ss_pred CceEEEEcccccCC----CCCCCeeEEEeccccccccCHHHHHHHH--HhhccCCcEEEEEec
Q 036563 152 KSLLWVEGDAEALC----FEDSTMDGYTIAFGIRNVTHIEKALAEA--YRVLKRGGRFLCLEL 208 (288)
Q Consensus 152 ~~v~~~~~d~~~~~----~~~~~~D~v~~~~~l~~~~~~~~~l~~~--~~~L~pgG~l~i~~~ 208 (288)
+++.++.+|+.+.. ..+++||+|+++..++ ..+....++.+ .++|+|||.+++...
T Consensus 94 ~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 94 EKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp GGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 57999999987632 2256899999988754 34566777777 889999999987543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=124.44 Aligned_cols=116 Identities=14% Similarity=0.138 Sum_probs=95.9
Q ss_pred HHHHhhcC--CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 73 DRLVSKLN--PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 73 ~~~~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
+.+...+. ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....++
T Consensus 221 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g-------------------~~V~gvDis~~al~~A~~n~~~~~~- 280 (381)
T 3dmg_A 221 EALQERLGPEGVRGRQVLDLGAGYGALTLPLARMG-------------------AEVVGVEDDLASVLSLQKGLEANAL- 280 (381)
T ss_dssp HHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTT-------------------CEEEEEESBHHHHHHHHHHHHHTTC-
T ss_pred HHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcC-------------------CEEEEEECCHHHHHHHHHHHHHcCC-
Confidence 44444432 3457799999999999999998873 7999999999999999999887764
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEecccccc-----ccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN-----VTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~-----~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+++++.+|+.+...++++||+|+++..+++ ..+...+++++.++|+|||.++++....
T Consensus 281 --~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 281 --KAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp --CCEEEECSTTTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred --CeEEEEcchhhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 489999999887666678999999999887 4456789999999999999999865444
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=126.07 Aligned_cols=123 Identities=12% Similarity=0.102 Sum_probs=95.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHH-------HH
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVG-------KK 142 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a-------~~ 142 (288)
.+...+++.+...++.+|||+|||+|..+..+++..+ ..+++|+|+++.+++.| ++
T Consensus 229 ~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g-----------------~~~V~GVDis~~~l~~A~~Ml~~ar~ 291 (433)
T 1u2z_A 229 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-----------------CALSFGCEIMDDASDLTILQYEELKK 291 (433)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-----------------CSEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCC-----------------CCEEEEEeCCHHHHHHHHHhHHHHHH
Confidence 4445677777778889999999999999999999863 46899999999998888 77
Q ss_pred HhhhcCCCCCceEEEEcccccC--CC--CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 143 RALERGYPDKSLLWVEGDAEAL--CF--EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 143 ~~~~~~~~~~~v~~~~~d~~~~--~~--~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
++...++.-.+++++.+|.... ++ ..++||+|+++..+ +.++....|+++.+.|+|||.+++.+...
T Consensus 292 ~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f~ 362 (433)
T 1u2z_A 292 RCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSLR 362 (433)
T ss_dssp HHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred HHHHcCCCCCceEEEEcCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence 7777663214899988754321 11 23579999998766 34677888999999999999999865433
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.1e-14 Score=125.91 Aligned_cols=116 Identities=17% Similarity=0.310 Sum_probs=93.0
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
...+++.+.......++.+|||||||+|.++..+++.. ..+|+++|.|+ |++.|++.+..+
T Consensus 68 t~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aG------------------A~~V~ave~s~-~~~~a~~~~~~n 128 (376)
T 4hc4_A 68 TDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAG------------------ARRVYAVEASA-IWQQAREVVRFN 128 (376)
T ss_dssp HHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTT------------------CSEEEEEECST-THHHHHHHHHHT
T ss_pred HHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhC------------------CCEEEEEeChH-HHHHHHHHHHHc
Confidence 34555666554444467899999999999998877763 26899999986 889999999888
Q ss_pred CCCCCceEEEEcccccCCCCCCCeeEEEec---cccccccCHHHHHHHHHhhccCCcEEE
Q 036563 148 GYPDKSLLWVEGDAEALCFEDSTMDGYTIA---FGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~---~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
++. +++.++.+|++++.++ +++|+|++- ..+.+......++....++|+|||.++
T Consensus 129 ~~~-~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 129 GLE-DRVHVLPGPVETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp TCT-TTEEEEESCTTTCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred CCC-ceEEEEeeeeeeecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceEC
Confidence 887 7899999999988766 589999983 334455567888999999999999987
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=8.8e-14 Score=115.71 Aligned_cols=105 Identities=11% Similarity=0.045 Sum_probs=86.1
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..++... ..+|+++|+++.|++.++++....++ +++.++.+|+.
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~------------------~~~V~~vD~s~~~l~~a~~~~~~~~~--~~v~~~~~D~~ 113 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY------------------AAGATLIEMDRAVSQQLIKNLATLKA--GNARVVNSNAM 113 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT------------------CSEEEEECSCHHHHHHHHHHHHHTTC--CSEEEECSCHH
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC------------------CCEEEEEECCHHHHHHHHHHHHHcCC--CcEEEEECCHH
Confidence 46799999999999999877763 25899999999999999999988766 48999999987
Q ss_pred c-CCCCCCCeeEEEeccccccccCHHHHHHHHHh--hccCCcEEEEEec
Q 036563 163 A-LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYR--VLKRGGRFLCLEL 208 (288)
Q Consensus 163 ~-~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~--~L~pgG~l~i~~~ 208 (288)
+ ++...++||+|+++..++ ......+++.+.+ +|+|||.+++...
T Consensus 114 ~~~~~~~~~fD~V~~~~p~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 114 SFLAQKGTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp HHHSSCCCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHhhcCCCCCEEEECCCCC-CCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 6 355567899999988754 4566778888865 5999999987543
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-13 Score=114.13 Aligned_cols=111 Identities=20% Similarity=0.210 Sum_probs=92.1
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
...+.+.+.+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....+
T Consensus 57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-------------------~~v~~vD~~~~~~~~a~~~~~~~~- 116 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-------------------DKVVSVEINEKMYNYASKLLSYYN- 116 (231)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-------------------SEEEEEESCHHHHHHHHHHHTTCS-
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-------------------CEEEEEeCCHHHHHHHHHHHhhcC-
Confidence 444567777777788899999999999999998873 799999999999999999886552
Q ss_pred CCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 150 PDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
++.+..+|+......+++||+|++..+++++. .++.++|+|||.+++....
T Consensus 117 ---~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 117 ---NIKLILGDGTLGYEEEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp ---SEEEEESCGGGCCGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECS
T ss_pred ---CeEEEECCcccccccCCCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcC
Confidence 68999999877333456899999999998875 3688999999999986543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=123.75 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=97.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
...+.+.+.+...++.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++....+.
T Consensus 183 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~-----------------~~~~v~~vD~s~~~l~~a~~~~~~~~~ 245 (343)
T 2pjd_A 183 VGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS-----------------PKIRLTLCDVSAPAVEASRATLAANGV 245 (343)
T ss_dssp HHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHC-----------------TTCBCEEEESBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence 345667777765567799999999999999999885 357999999999999999999887664
Q ss_pred CCCceEEEEcccccCCCCCCCeeEEEecccccc-----ccCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 150 PDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN-----VTHIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~-----~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
..++..+|+.... +++||+|+++.++|+ ..+...+++++.++|+|||.++++.....
T Consensus 246 ---~~~~~~~d~~~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 307 (343)
T 2pjd_A 246 ---EGEVFASNVFSEV--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (343)
T ss_dssp ---CCEEEECSTTTTC--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTS
T ss_pred ---CCEEEEccccccc--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC
Confidence 3677888876543 568999999999875 23567899999999999999998765543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=117.58 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=93.7
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+...+...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...++. +
T Consensus 44 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~-----------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~ 105 (233)
T 2gpy_A 44 ESLLHLLKMAAPARILEIGTAIGYSAIRMAQAL-----------------PEATIVSIERDERRYEEAHKHVKALGLE-S 105 (233)
T ss_dssp HHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHC-----------------TTCEEEEECCCHHHHHHHHHHHHHTTCT-T
T ss_pred HHHHHHHhccCCCEEEEecCCCcHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-C
Confidence 344444444567799999999999999999986 3589999999999999999999887765 5
Q ss_pred ceEEEEcccccC-CCC--CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 153 SLLWVEGDAEAL-CFE--DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 153 ~v~~~~~d~~~~-~~~--~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
++.+..+|+... +.. +++||+|++....+ +...+++.+.++|+|||.+++.+.
T Consensus 106 ~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 106 RIELLFGDALQLGEKLELYPLFDVLFIDAAKG---QYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp TEEEECSCGGGSHHHHTTSCCEEEEEEEGGGS---CHHHHHHHHGGGEEEEEEEEEETT
T ss_pred cEEEEECCHHHHHHhcccCCCccEEEECCCHH---HHHHHHHHHHHHcCCCeEEEEEcC
Confidence 799999998774 322 46899999977653 678899999999999999997543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-13 Score=118.08 Aligned_cols=110 Identities=14% Similarity=0.207 Sum_probs=83.7
Q ss_pred CCCeEEEecCCccH----HHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh------------
Q 036563 83 PGMKHLDVAGGTGD----VAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE------------ 146 (288)
Q Consensus 83 ~~~~vLDiG~G~G~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~------------ 146 (288)
++.+|+|+|||||. ++..+++..+. .+.+.+|+++|+|+.|++.|++....
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~-------------~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~ 171 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGM-------------APGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQL 171 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCS-------------CTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHH
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhccc-------------CCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHH
Confidence 45799999999998 55556665420 00136999999999999999987410
Q ss_pred -----------cC-C--C---CCceEEEEcccccCCCC-CCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEE
Q 036563 147 -----------RG-Y--P---DKSLLWVEGDAEALCFE-DSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 147 -----------~~-~--~---~~~v~~~~~d~~~~~~~-~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i 205 (288)
.+ + . ..++.|.+.|+.+.+++ .++||+|+|.++++++++. .++++++++.|+|||++++
T Consensus 172 ~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 172 QRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp HHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 00 0 0 02689999998876554 5689999999999998755 7899999999999999986
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-13 Score=116.76 Aligned_cols=116 Identities=14% Similarity=0.027 Sum_probs=86.1
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeC-ChhHHHHHHHHh-----hh
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDI-NPNMLNVGKKRA-----LE 146 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~-s~~~~~~a~~~~-----~~ 146 (288)
+.+.......++.+|||+|||+|.++..++... ..+|+++|+ ++.+++.++++. ..
T Consensus 69 ~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~------------------~~~v~~~D~s~~~~~~~a~~n~~~N~~~~ 130 (281)
T 3bzb_A 69 DTLCWQPELIAGKTVCELGAGAGLVSIVAFLAG------------------ADQVVATDYPDPEILNSLESNIREHTANS 130 (281)
T ss_dssp HHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTT------------------CSEEEEEECSCHHHHHHHHHHHHTTCC--
T ss_pred HHHHhcchhcCCCeEEEecccccHHHHHHHHcC------------------CCEEEEEeCCCHHHHHHHHHHHHHhhhhh
Confidence 344444434567799999999999999887752 258999999 899999999988 33
Q ss_pred cCCC---CCceEEEEcccccCC--C----CCCCeeEEEeccccccccCHHHHHHHHHhhcc---C--CcEEEEE
Q 036563 147 RGYP---DKSLLWVEGDAEALC--F----EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLK---R--GGRFLCL 206 (288)
Q Consensus 147 ~~~~---~~~v~~~~~d~~~~~--~----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~---p--gG~l~i~ 206 (288)
.++. .+++.+...|..+.. + +.++||+|++..++++.++...+++.+.++|+ | ||.++++
T Consensus 131 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 131 CSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp --------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred cccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 3321 025777766544321 1 35689999999999998899999999999999 9 9988764
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=116.81 Aligned_cols=107 Identities=18% Similarity=0.228 Sum_probs=83.7
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh------cCCCCCceE
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE------RGYPDKSLL 155 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~------~~~~~~~v~ 155 (288)
.++.+|||||||+|.++..+++.. +...++|+|+++.|++.|++++.. .+. .++.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~-----------------p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~--~nv~ 105 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLF-----------------PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF--QNIA 105 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGS-----------------TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC--TTEE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHC-----------------CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC--CeEE
Confidence 345689999999999999998876 468999999999999999887653 233 5899
Q ss_pred EEEccccc-CC--CCCCCeeEEEeccccccccC--------HHHHHHHHHhhccCCcEEEEEe
Q 036563 156 WVEGDAEA-LC--FEDSTMDGYTIAFGIRNVTH--------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 156 ~~~~d~~~-~~--~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
++.+|+.. ++ +++++||.|++.+...+... ...+++++.++|+|||.|++..
T Consensus 106 ~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 106 CLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEECCTTTCHHHHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 99999986 44 67789999987654332211 1468999999999999999754
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=110.92 Aligned_cols=90 Identities=14% Similarity=0.060 Sum_probs=77.4
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.+...++.+|||+|||+ . . +|+|+.|++.++++.. .++.+.
T Consensus 7 ~~g~~~g~~vL~~~~g~----------v-------------------~----vD~s~~ml~~a~~~~~------~~~~~~ 47 (176)
T 2ld4_A 7 DFGISAGQFVAVVWDKS----------S-------------------P----VEALKGLVDKLQALTG------NEGRVS 47 (176)
T ss_dssp TTTCCTTSEEEEEECTT----------S-------------------C----HHHHHHHHHHHHHHTT------TTSEEE
T ss_pred ccCCCCCCEEEEecCCc----------e-------------------e----eeCCHHHHHHHHHhcc------cCcEEE
Confidence 34556789999999986 1 1 7889999999988753 248899
Q ss_pred EcccccCCC---CCCCeeEEEeccccccc-cCHHHHHHHHHhhccCCcEEEEE
Q 036563 158 EGDAEALCF---EDSTMDGYTIAFGIRNV-THIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 158 ~~d~~~~~~---~~~~~D~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.+|+.++++ ++++||+|++..+++|+ ++...++++++++|||||++++.
T Consensus 48 ~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~ 100 (176)
T 2ld4_A 48 VENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLK 100 (176)
T ss_dssp EEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred EechhcCccccCCCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEE
Confidence 999998876 77899999999999999 89999999999999999999974
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-13 Score=108.38 Aligned_cols=108 Identities=21% Similarity=0.290 Sum_probs=88.0
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..++.+|||+|||+|.++..+++..+ +..+++++|+++ +++. +++.+..+|
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~----------------~~~~v~~~D~~~-~~~~------------~~~~~~~~d 70 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIG----------------GKGRIIACDLLP-MDPI------------VGVDFLQGD 70 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHC----------------TTCEEEEEESSC-CCCC------------TTEEEEESC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhC----------------CCCeEEEEECcc-cccc------------CcEEEEEcc
Confidence 46678999999999999999998863 358999999999 6531 378999999
Q ss_pred cccCC--------CCCCCeeEEEeccccccccCH-----------HHHHHHHHhhccCCcEEEEEeccCCChHHHH
Q 036563 161 AEALC--------FEDSTMDGYTIAFGIRNVTHI-----------EKALAEAYRVLKRGGRFLCLELSHVDIPVFK 217 (288)
Q Consensus 161 ~~~~~--------~~~~~~D~v~~~~~l~~~~~~-----------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~ 217 (288)
+.+.+ +++++||+|+++..+++..+. ..+++++.++|+|||.+++..........+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~ 146 (180)
T 1ej0_A 71 FRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYL 146 (180)
T ss_dssp TTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHH
T ss_pred cccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHH
Confidence 88765 666789999999988877655 6889999999999999998777665544433
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.48 E-value=5e-13 Score=115.60 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=83.9
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..+++.. ++.+++++|+++.+++.++++. +++.+..+|+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~-----------------~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~ 139 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADAL-----------------PEITTFGLDVSKVAIKAAAKRY-------PQVTFCVASS 139 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTC-----------------TTSEEEEEESCHHHHHHHHHHC-------TTSEEEECCT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhC-----------------CCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcch
Confidence 457799999999999999999875 3479999999999999998764 4688999999
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
..+++++++||+|++..+.. .++++.++|+|||.+++......
T Consensus 140 ~~~~~~~~~fD~v~~~~~~~-------~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 140 HRLPFSDTSMDAIIRIYAPC-------KAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp TSCSBCTTCEEEEEEESCCC-------CHHHHHHHEEEEEEEEEEEECTT
T ss_pred hhCCCCCCceeEEEEeCChh-------hHHHHHHhcCCCcEEEEEEcCHH
Confidence 88888888999999876532 48899999999999998766543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.8e-13 Score=110.83 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=90.7
Q ss_pred HHHhhcC--CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC--
Q 036563 74 RLVSKLN--PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY-- 149 (288)
Q Consensus 74 ~~~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-- 149 (288)
.+.+.+. ..++.+|||+|||+|..+..+++..+ +..+++++|+++.+++.++++....+.
T Consensus 66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~----------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 129 (226)
T 1i1n_A 66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVG----------------CTGKVIGIDHIKELVDDSVNNVRKDDPTL 129 (226)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHC----------------TTCEEEEEESCHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhC----------------CCcEEEEEeCCHHHHHHHHHHHHhhcccc
Confidence 4445554 56788999999999999999998863 346999999999999999998876542
Q ss_pred -CCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 150 -PDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 150 -~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
...++.+..+|+.......++||+|++...++++ ++++.+.|+|||.+++....
T Consensus 130 ~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 130 LSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVV------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp HHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred cCCCcEEEEECCcccCcccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEec
Confidence 0147999999987665556689999999888765 35789999999999986543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=118.24 Aligned_cols=118 Identities=16% Similarity=0.078 Sum_probs=88.2
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHh--hhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc---C
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDT--VNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER---G 148 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~---~ 148 (288)
.+.+.+...++.+|||+|||+|.++..+++. . +..+++++|+|+.+++.+++++... +
T Consensus 42 ~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~-----------------~~~~v~gvDis~~~l~~A~~~~~~~~~~~ 104 (250)
T 1o9g_A 42 RALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRR-----------------SLRQVIASDVDPAPLELAAKNLALLSPAG 104 (250)
T ss_dssp HHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGG-----------------GEEEEEEEESCHHHHHHHHHHHHTTSHHH
T ss_pred HHHHhcccCCCCeEEECCCCCCHHHHHHHHHhcc-----------------CCCeEEEEECCHHHHHHHHHHHHHhhhcc
Confidence 3344444445679999999999999999887 3 2478999999999999999876543 2
Q ss_pred CCCCc-------------------------eE-------------EEEcccccCCC-----CCCCeeEEEeccccccccC
Q 036563 149 YPDKS-------------------------LL-------------WVEGDAEALCF-----EDSTMDGYTIAFGIRNVTH 185 (288)
Q Consensus 149 ~~~~~-------------------------v~-------------~~~~d~~~~~~-----~~~~~D~v~~~~~l~~~~~ 185 (288)
+. .+ ++ +..+|+.+... ...+||+|+++..+....+
T Consensus 105 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~ 183 (250)
T 1o9g_A 105 LT-ARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTH 183 (250)
T ss_dssp HH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSS
T ss_pred cc-ccchhhhhhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeecccc
Confidence 21 11 56 89999876421 3348999999887654433
Q ss_pred ---------HHHHHHHHHhhccCCcEEEEEecc
Q 036563 186 ---------IEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 186 ---------~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
...+++++.++|+|||+++++...
T Consensus 184 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 184 WEGQVPGQPVAGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp SSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred ccccccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence 357899999999999999985443
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=118.34 Aligned_cols=151 Identities=17% Similarity=0.189 Sum_probs=97.4
Q ss_pred HHhhcCC-CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 75 LVSKLNP-FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 75 ~~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
+++.+.. .++.+|||+|||||.++..+++.. ..+|+++|+++.|+..+.+.- ++
T Consensus 76 ~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~g------------------a~~V~aVDvs~~mL~~a~r~~-------~r 130 (291)
T 3hp7_A 76 ALAVFNLSVEDMITIDIGASTGGFTDVMLQNG------------------AKLVYAVDVGTNQLVWKLRQD-------DR 130 (291)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT------------------CSEEEEECSSSSCSCHHHHTC-------TT
T ss_pred HHHhcCCCccccEEEecCCCccHHHHHHHhCC------------------CCEEEEEECCHHHHHHHHHhC-------cc
Confidence 3344443 356799999999999999888873 369999999999998854421 23
Q ss_pred eEEE-EcccccCC---CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccc
Q 036563 154 LLWV-EGDAEALC---FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIP 229 (288)
Q Consensus 154 v~~~-~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 229 (288)
+... ..++..+. ++..+||+|++..++++ ...+|.+++++|+|||.++++. .|+...-. ....
T Consensus 131 v~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s---l~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~--------~~~~ 197 (291)
T 3hp7_A 131 VRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS---LNLILPALAKILVDGGQVVALV--KPQFEAGR--------EQIG 197 (291)
T ss_dssp EEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC---GGGTHHHHHHHSCTTCEEEEEE--CGGGTSCG--------GGCC
T ss_pred cceecccCceecchhhCCCCCCCEEEEEeeHhh---HHHHHHHHHHHcCcCCEEEEEE--CcccccCh--------hhcC
Confidence 3322 33444332 33445999999888765 4778999999999999999752 22111000 0000
Q ss_pred cccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 230 AIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
..| .+ .++..+ ....+++.++++++||.+..+..
T Consensus 198 ~~G-~v-rd~~~~---------~~~~~~v~~~~~~~Gf~v~~~~~ 231 (291)
T 3hp7_A 198 KNG-IV-RESSIH---------EKVLETVTAFAVDYGFSVKGLDF 231 (291)
T ss_dssp -CC-CC-CCHHHH---------HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CCC-cc-CCHHHH---------HHHHHHHHHHHHHCCCEEEEEEE
Confidence 000 10 011111 12578899999999999888764
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-13 Score=114.64 Aligned_cols=107 Identities=15% Similarity=0.172 Sum_probs=88.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|..+..+++.++ +..+++++|+++.+++.+++++...++. ++++++.+|+
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~----------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~ 125 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALP----------------KDGTLITCDVDEKSTALAKEYWEKAGLS-DKIGLRLSPA 125 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCC----------------TTCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCH
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCC----------------CCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEEeCCH
Confidence 3567999999999999999998863 3689999999999999999999888776 6799999998
Q ss_pred ccC-C-CCC----CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 162 EAL-C-FED----STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 162 ~~~-~-~~~----~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+. + ... ++||+|++... ..+...+++++.++|+|||.+++.+.
T Consensus 126 ~~~~~~~~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 126 KDTLAELIHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp HHHHHHHHTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred HHHHHHhhhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 553 2 111 68999997654 34577899999999999999997544
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-13 Score=112.50 Aligned_cols=104 Identities=12% Similarity=0.163 Sum_probs=86.5
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|..+..+++..+ +..+++++|+++.+++.+++++...++. ++++++.+|+.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~----------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~ 118 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAIS----------------ISSRVVMIDPDRDNVEHARRMLHDNGLI-DRVELQVGDPL 118 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSC----------------TTCEEEEEESCHHHHHHHHHHHHHHSGG-GGEEEEESCHH
T ss_pred CCCEEEEEcCCccHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHCCCC-ceEEEEEecHH
Confidence 457999999999999999998762 2589999999999999999998877664 57999999986
Q ss_pred cC-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 163 AL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 163 ~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+. +..++ ||+|++... ..+...+++++.++|+|||.+++.+
T Consensus 119 ~~~~~~~~-fD~v~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 119 GIAAGQRD-IDILFMDCD---VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp HHHTTCCS-EEEEEEETT---TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred HHhccCCC-CCEEEEcCC---hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 54 44445 999998743 3567889999999999999998744
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-14 Score=120.80 Aligned_cols=107 Identities=16% Similarity=0.087 Sum_probs=89.1
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|..+..+++..+ ++++|+++|+++.+++.+++++...++. ++++++.+|+
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~----------------~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~gda 121 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALP----------------DDGQVITCDINEGWTKHAHPYWREAKQE-HKIKLRLGPA 121 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSC----------------TTCEEEEEECCCSSCCCSHHHHHHTTCT-TTEEEEESCH
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCH
Confidence 3467999999999999999999863 3689999999999999999999888776 6899999998
Q ss_pred ccC-CCC-----CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 162 EAL-CFE-----DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 162 ~~~-~~~-----~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+. +.. .++||+|++... ..+...+++++.++|+|||.+++-+.
T Consensus 122 ~~~l~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 122 LDTLHSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp HHHHHHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred HHHHHHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECC
Confidence 664 211 468999998765 34567789999999999999997544
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=114.03 Aligned_cols=107 Identities=9% Similarity=0.009 Sum_probs=87.7
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..++.+|||+|||+|..+..+++..+ ++.+++++|+++.+++.+++++...++. ++++++.+|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~----------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d 118 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLS----------------SGGRVVTLEASEKHADIARSNIERANLN-DRVEVRTGL 118 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCC----------------SSCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESC
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcC
Confidence 34568999999999999999999863 3689999999999999999999888776 679999999
Q ss_pred cccC-C-CC---CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 161 AEAL-C-FE---DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 161 ~~~~-~-~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+.+. + +. .++||+|++.... .....+++++.++|+|||.+++.+
T Consensus 119 ~~~~~~~~~~~~~~~fD~v~~d~~~---~~~~~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 119 ALDSLQQIENEKYEPFDFIFIDADK---QNNPAYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp HHHHHHHHHHTTCCCCSEEEECSCG---GGHHHHHHHHHHTCCTTCEEEEES
T ss_pred HHHHHHHHHhcCCCCcCEEEEcCCc---HHHHHHHHHHHHhcCCCcEEEEeC
Confidence 8653 1 11 2579999987652 356789999999999999888643
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.46 E-value=9e-13 Score=112.40 Aligned_cols=111 Identities=13% Similarity=0.108 Sum_probs=92.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+...+...++.+|||+|||+|.++..+++. . .+++++|+++.+++.++++....++. +
T Consensus 81 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~------------------~~v~~vD~~~~~~~~a~~~~~~~~~~-~ 140 (248)
T 2yvl_A 81 FYIALKLNLNKEKRVLEFGTGSGALLAVLSEV-A------------------GEVWTFEAVEEFYKTAQKNLKKFNLG-K 140 (248)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-S------------------SEEEEECSCHHHHHHHHHHHHHTTCC-T
T ss_pred HHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-C------------------CEEEEEecCHHHHHHHHHHHHHcCCC-C
Confidence 35666777778889999999999999999887 3 79999999999999999998877664 5
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
++.+..+|+.+...+++.||+|+++ .+++..+++++.++|+|||.+++...
T Consensus 141 ~~~~~~~d~~~~~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 141 NVKFFNVDFKDAEVPEGIFHAAFVD-----VREPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp TEEEECSCTTTSCCCTTCBSEEEEC-----SSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred cEEEEEcChhhcccCCCcccEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 7999999987754355689999973 34677889999999999999997553
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-12 Score=121.00 Aligned_cols=121 Identities=21% Similarity=0.255 Sum_probs=97.1
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+...+...++.+|||+|||+|..+..+++..+ ...+++++|+++.+++.+++++...++.
T Consensus 249 ~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~----------------~~~~v~a~D~s~~~l~~~~~~~~~~g~~-- 310 (450)
T 2yxl_A 249 AVASIVLDPKPGETVVDLAAAPGGKTTHLAELMK----------------NKGKIYAFDVDKMRMKRLKDFVKRMGIK-- 310 (450)
T ss_dssp HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTT----------------TCSEEEEECSCHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcC----------------CCCEEEEEcCCHHHHHHHHHHHHHcCCC--
Confidence 3445567778889999999999999999999863 2379999999999999999999887764
Q ss_pred ceEEEEcccccCC--CCCCCeeEEEecc------ccccccCH----------------HHHHHHHHhhccCCcEEEEEec
Q 036563 153 SLLWVEGDAEALC--FEDSTMDGYTIAF------GIRNVTHI----------------EKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 153 ~v~~~~~d~~~~~--~~~~~~D~v~~~~------~l~~~~~~----------------~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
++.+..+|+...+ +++++||+|++.. +++..++. ..+|+++.++|||||.+++.++
T Consensus 311 ~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc 390 (450)
T 2yxl_A 311 IVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC 390 (450)
T ss_dssp SEEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred cEEEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 7999999998765 4446899999732 33333332 5689999999999999998877
Q ss_pred cCC
Q 036563 209 SHV 211 (288)
Q Consensus 209 ~~~ 211 (288)
+..
T Consensus 391 s~~ 393 (450)
T 2yxl_A 391 SIF 393 (450)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=123.98 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=83.5
Q ss_pred HHHhhcCCCCCCeEEEecCC------ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 74 RLVSKLNPFPGMKHLDVAGG------TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G------~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
.++..+.. ++.+||||||| +|..+..+++... +.++|+++|+++.|.. ..
T Consensus 208 ~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~f----------------P~a~V~GVDiSp~m~~-------~~ 263 (419)
T 3sso_A 208 RHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFF----------------PRGQIYGLDIMDKSHV-------DE 263 (419)
T ss_dssp HHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHC----------------TTCEEEEEESSCCGGG-------CB
T ss_pred HHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhC----------------CCCEEEEEECCHHHhh-------cC
Confidence 34444433 35799999999 7777777766542 4689999999999831 11
Q ss_pred CCCCCceEEEEcccccCCCC------CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 148 GYPDKSLLWVEGDAEALCFE------DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~~~------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
++++++++|+.++++. +++||+|++.. .++..+...+|+++.++|||||.+++.+..
T Consensus 264 ----~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 264 ----LRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp ----TTEEEEECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred ----CCcEEEEecccccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 6899999999887665 67899999875 466678889999999999999999987765
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=111.34 Aligned_cols=111 Identities=23% Similarity=0.308 Sum_probs=91.1
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
....+.+.+...++.+|||+|||+|.++..+++.. + .+++++|+++.+++.++++....++.
T Consensus 79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~-----------------~-~~v~~vD~~~~~~~~a~~~~~~~~~~ 140 (235)
T 1jg1_A 79 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV-----------------K-TDVYTIERIPELVEFAKRNLERAGVK 140 (235)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH-----------------C-SCEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHh-----------------C-CEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 44566677777788899999999999999999886 3 78999999999999999998887764
Q ss_pred CCceEEEEcccccCCCCC-CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 151 DKSLLWVEGDAEALCFED-STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
++.+..+|+. .+++. ..||+|++..+++++.+ ++.+.|+|||.+++...
T Consensus 141 --~v~~~~~d~~-~~~~~~~~fD~Ii~~~~~~~~~~------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 141 --NVHVILGDGS-KGFPPKAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp --SEEEEESCGG-GCCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEEC
T ss_pred --CcEEEECCcc-cCCCCCCCccEEEECCcHHHHHH------HHHHhcCCCcEEEEEEe
Confidence 6999999973 33333 35999999999887753 67899999999997544
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-13 Score=110.54 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=83.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..+++.. ..++++|+++.+++.++++....++ ++++..+|+.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~-------------------~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~d~~ 98 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEG-------------------WEAVLVEKDPEAVRLLKENVRRTGL---GARVVALPVE 98 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTT-------------------CEEEEECCCHHHHHHHHHHHHHHTC---CCEEECSCHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHCC-------------------CeEEEEeCCHHHHHHHHHHHHHcCC---ceEEEeccHH
Confidence 56799999999999999998874 4599999999999999999877653 6899999987
Q ss_pred cC-C-C--CCCCeeEEEeccccccccCHHHHHHHHH--hhccCCcEEEEEeccC
Q 036563 163 AL-C-F--EDSTMDGYTIAFGIRNVTHIEKALAEAY--RVLKRGGRFLCLELSH 210 (288)
Q Consensus 163 ~~-~-~--~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~~ 210 (288)
+. + . ..++||+|+++..++ .+....++.+. ++|+|||.+++.....
T Consensus 99 ~~~~~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 99 VFLPEAKAQGERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp HHHHHHHHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred HHHHhhhccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 63 2 1 124799999998765 45566677777 9999999998755433
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.9e-13 Score=113.81 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=88.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||||||+|..+..+++.++ ++.+++++|+++.+++.+++++...++. ++++++.+|+
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~----------------~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~i~~~~gda 140 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIP----------------EDGKILAMDINKENYELGLPVIKKAGVD-HKIDFREGPA 140 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSC----------------TTCEEEEEESCCHHHHHHHHHHHHTTCG-GGEEEEESCH
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CCeEEEECCH
Confidence 3467999999999999999999863 3689999999999999999999887775 6899999998
Q ss_pred ccC-C-C-----CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 162 EAL-C-F-----EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 162 ~~~-~-~-----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.+. + + +.++||+|++... ..+...+++.+.++|+|||.+++.+
T Consensus 141 ~~~l~~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 141 LPVLDEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp HHHHHHHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred HHHHHHHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 653 2 1 1568999998754 3457889999999999999998643
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.4e-13 Score=124.46 Aligned_cols=115 Identities=15% Similarity=0.206 Sum_probs=93.8
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.+.+.+.+.+...++.+|||+|||+|.++..+++. +..+++++|+++ +++.+++++...++
T Consensus 145 ~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~------------------~~~~V~gvD~s~-~l~~A~~~~~~~gl 205 (480)
T 3b3j_A 145 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA------------------GARKIYAVEAST-MAQHAEVLVKSNNL 205 (480)
T ss_dssp HHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHT------------------TCSEEEEEECHH-HHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHc------------------CCCEEEEEEcHH-HHHHHHHHHHHcCC
Confidence 34455666666667789999999999999988774 247999999998 99999999888877
Q ss_pred CCCceEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEE
Q 036563 150 PDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i 205 (288)
. ++++++.+|+.+++++ ++||+|+++..+++.. +....+.++.++|+|||.+++
T Consensus 206 ~-~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 206 T-DRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp T-TTEEEEESCTTTCCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred C-CcEEEEECchhhCccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 6 6899999999887654 4799999987766654 346678889999999999984
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-12 Score=111.90 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=94.9
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+...+...++.+|||+|||+|..+..+++... ...+++++|+++.+++.+++++...++. ++
T Consensus 75 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~----------------~~~~v~avD~~~~~l~~~~~~~~~~g~~--~v 136 (274)
T 3ajd_A 75 PPIVLNPREDDFILDMCAAPGGKTTHLAQLMK----------------NKGTIVAVEISKTRTKALKSNINRMGVL--NT 136 (274)
T ss_dssp HHHHHCCCTTCEEEETTCTTCHHHHHHHHHTT----------------TCSEEEEEESCHHHHHHHHHHHHHTTCC--SE
T ss_pred HHHHhCCCCcCEEEEeCCCccHHHHHHHHHcC----------------CCCEEEEECCCHHHHHHHHHHHHHhCCC--cE
Confidence 34556677888999999999999999998763 2379999999999999999999887764 89
Q ss_pred EEEEcccccCCC----CCCCeeEEEeccccccc------------------cCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 155 LWVEGDAEALCF----EDSTMDGYTIAFGIRNV------------------THIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 155 ~~~~~d~~~~~~----~~~~~D~v~~~~~l~~~------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.+..+|+..++. ..++||+|++....... .....+|+++.++|||||.+++...+.
T Consensus 137 ~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 137 IIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEESCHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 999999887643 25689999987433211 234778999999999999999877655
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-12 Score=113.74 Aligned_cols=115 Identities=11% Similarity=0.153 Sum_probs=88.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.+.+.+...+...++.+|||+|||+|.++..++.. + ..+++++|+|+.+++.++++....++
T Consensus 110 ~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~-----------------~~~v~~vDis~~al~~A~~n~~~~~l 171 (284)
T 1nv8_A 110 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-----------------DAIVFATDVSSKAVEIARKNAERHGV 171 (284)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-----------------SCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-C-----------------CCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 34445555544335679999999999999999887 3 58999999999999999999988877
Q ss_pred CCCceEEEEcccccCCCCCCCe---eEEEeccccc-----------ccc--------CHHHHHHHHH-hhccCCcEEEE
Q 036563 150 PDKSLLWVEGDAEALCFEDSTM---DGYTIAFGIR-----------NVT--------HIEKALAEAY-RVLKRGGRFLC 205 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~~~~~---D~v~~~~~l~-----------~~~--------~~~~~l~~~~-~~L~pgG~l~i 205 (288)
. +++.++.+|+.+. .+ ++| |+|+++.... |.+ +...+++++. +.|+|||.+++
T Consensus 172 ~-~~v~~~~~D~~~~-~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 172 S-DRFFVRKGEFLEP-FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp T-TSEEEEESSTTGG-GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred C-CceEEEECcchhh-cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 5 5699999998763 22 468 9999984322 111 1236899999 99999999986
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-12 Score=115.64 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=88.2
Q ss_pred HHHhhcC-CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 74 RLVSKLN-PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 74 ~~~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
.+.+.+. ..++.+|||+|||+|.++..++... .+++++|+|+.+++.+++++...++.+.
T Consensus 143 ~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~g-------------------a~V~~VD~s~~al~~a~~n~~~~gl~~~ 203 (332)
T 2igt_A 143 WLKNAVETADRPLKVLNLFGYTGVASLVAAAAG-------------------AEVTHVDASKKAIGWAKENQVLAGLEQA 203 (332)
T ss_dssp HHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTT-------------------CEEEEECSCHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHhcCCCCcEEEcccccCHHHHHHHHcC-------------------CEEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence 3444442 3456799999999999999998863 5999999999999999999988877522
Q ss_pred ceEEEEcccccCCC----CCCCeeEEEecccc----------ccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 153 SLLWVEGDAEALCF----EDSTMDGYTIAFGI----------RNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 153 ~v~~~~~d~~~~~~----~~~~~D~v~~~~~l----------~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
++.++.+|+.++.. ..++||+|+++... +...+...+++.+.++|+|||.+++..
T Consensus 204 ~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~ 272 (332)
T 2igt_A 204 PIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 272 (332)
T ss_dssp CEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred ceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 59999999876531 14689999996542 122346788999999999999977643
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-12 Score=109.29 Aligned_cols=116 Identities=20% Similarity=0.294 Sum_probs=88.7
Q ss_pred HHHHHhhc--CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC-
Q 036563 72 KDRLVSKL--NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG- 148 (288)
Q Consensus 72 ~~~~~~~l--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~- 148 (288)
...+.+.+ ...++.+|||+|||+|..+..+++..+.. ...+..+++++|+++.+++.++++....+
T Consensus 71 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~-----------~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~ 139 (227)
T 1r18_A 71 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAK-----------GVDADTRIVGIEHQAELVRRSKANLNTDDR 139 (227)
T ss_dssp HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHS-----------CCCTTCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccc-----------cCCccCEEEEEEcCHHHHHHHHHHHHhcCc
Confidence 34455555 35677899999999999999999876300 00002589999999999999999876543
Q ss_pred ----CCCCceEEEEcccccCCCCC-CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 149 ----YPDKSLLWVEGDAEALCFED-STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 149 ----~~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
. .++.+..+|+.. +++. ++||+|++...++++. +++.+.|+|||.+++..
T Consensus 140 ~~~~~--~~v~~~~~d~~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 140 SMLDS--GQLLIVEGDGRK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPV 194 (227)
T ss_dssp HHHHH--TSEEEEESCGGG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred cccCC--CceEEEECCccc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEE
Confidence 2 479999999876 3333 6899999999988764 67899999999999753
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=109.22 Aligned_cols=117 Identities=11% Similarity=0.131 Sum_probs=89.7
Q ss_pred HHHHhhc--CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC-
Q 036563 73 DRLVSKL--NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY- 149 (288)
Q Consensus 73 ~~~~~~l--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~- 149 (288)
..+.+.+ ...++.+|||+|||+|.++..+++..+.. ..+..+++++|+++.+++.++++....++
T Consensus 68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~------------~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~ 135 (227)
T 2pbf_A 68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVL------------ENKNSYVIGLERVKDLVNFSLENIKRDKPE 135 (227)
T ss_dssp HHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTT------------TCTTCEEEEEESCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhccc------------CCCCCEEEEEeCCHHHHHHHHHHHHHcCcc
Confidence 3444555 35677899999999999999998875100 00135999999999999999999877652
Q ss_pred --CCCceEEEEcccccCC----CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 150 --PDKSLLWVEGDAEALC----FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 150 --~~~~v~~~~~d~~~~~----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
...++.+..+|+.... ...++||+|++...++++ ++++.+.|+|||.+++..
T Consensus 136 ~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 136 LLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPI 193 (227)
T ss_dssp GGSSTTEEEEECCGGGCCHHHHHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEE
T ss_pred ccccCCEEEEECChHhcccccCccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEE
Confidence 0147999999987754 445689999999988765 477899999999999753
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-12 Score=110.59 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=84.1
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--------CCCCCc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--------GYPDKS 153 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--------~~~~~~ 153 (288)
.++.+|||||||+|.++..+++.. +...++++|+++.+++.+++++... ++ .+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~-----------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~--~n 108 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAF-----------------PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF--QN 108 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHS-----------------TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT--TT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC-----------------CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC--Cc
Confidence 356789999999999999999886 3579999999999999999887654 44 47
Q ss_pred eEEEEccccc-CC--CCCCCeeEEEeccccccccC--------HHHHHHHHHhhccCCcEEEEEe
Q 036563 154 LLWVEGDAEA-LC--FEDSTMDGYTIAFGIRNVTH--------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 154 v~~~~~d~~~-~~--~~~~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+.++.+|+.+ ++ +..+.+|.|++.+.-.+... ...++.++.++|+|||.+++..
T Consensus 109 v~~~~~D~~~~l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 109 INVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp EEEEECCTTSCGGGTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeccHHHHHHHhccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 9999999876 44 56778999986543211110 0479999999999999999743
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=9.3e-13 Score=112.25 Aligned_cols=100 Identities=11% Similarity=0.064 Sum_probs=80.0
Q ss_pred CCCeEEEecCCccHHHHHHHHh---hhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDT---VNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
++.+|||||||+|..+..+++. .. +.++|+++|+++.+++.++. .. ++++++.+
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~----------------~~~~V~gvD~s~~~l~~a~~------~~-~~v~~~~g 137 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMG----------------IDCQVIGIDRDLSRCQIPAS------DM-ENITLHQG 137 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTT----------------CCCEEEEEESCCTTCCCCGG------GC-TTEEEEEC
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcC----------------CCCEEEEEeCChHHHHHHhc------cC-CceEEEEC
Confidence 3579999999999999999887 22 46899999999999887761 11 58999999
Q ss_pred ccccC---CCCC-CCeeEEEeccccccccCHHHHHHHHHh-hccCCcEEEEEec
Q 036563 160 DAEAL---CFED-STMDGYTIAFGIRNVTHIEKALAEAYR-VLKRGGRFLCLEL 208 (288)
Q Consensus 160 d~~~~---~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~-~L~pgG~l~i~~~ 208 (288)
|+... +... .+||+|++... | .+...++.++.+ +|+|||++++.+.
T Consensus 138 D~~~~~~l~~~~~~~fD~I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 138 DCSDLTTFEHLREMAHPLIFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp CSSCSGGGGGGSSSCSSEEEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred cchhHHHHHhhccCCCCEEEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 99874 4333 37999998765 3 367889999997 9999999997543
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=111.08 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=86.9
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|..+..+++..+ +..+++++|+++.+++.+++++...++. +++.+..+|+.
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~----------------~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~~d~~ 134 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLP----------------PDGQIIACDQDPNATAIAKKYWQKAGVA-EKISLRLGPAL 134 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSC----------------TTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHH
T ss_pred CCCEEEEecCCCCHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHH
Confidence 467999999999999999998863 3579999999999999999998877765 57999999975
Q ss_pred cC----CCCC--CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 163 AL----CFED--STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 163 ~~----~~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+. +..+ ++||+|++... ..+...+++++.++|+|||.+++.+.
T Consensus 135 ~~l~~l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 135 ATLEQLTQGKPLPEFDLIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp HHHHHHHTSSSCCCEEEEEECSC---GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred HHHHHHHhcCCCCCcCEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 42 2222 68999998754 24567899999999999999997543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.7e-13 Score=113.80 Aligned_cols=151 Identities=17% Similarity=0.202 Sum_probs=90.7
Q ss_pred HhhcCC-CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 76 VSKLNP-FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 76 ~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+..+.. .++.+|||+|||||.++..+++.. ..+++++|+|+.|++.++++.. ++
T Consensus 29 L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g------------------~~~V~gvDis~~ml~~a~~~~~-------~~ 83 (232)
T 3opn_A 29 LKEFHLEINGKTCLDIGSSTGGFTDVMLQNG------------------AKLVYALDVGTNQLAWKIRSDE-------RV 83 (232)
T ss_dssp HHHTTCCCTTCEEEEETCTTSHHHHHHHHTT------------------CSEEEEECSSCCCCCHHHHTCT-------TE
T ss_pred HHHcCCCCCCCEEEEEccCCCHHHHHHHhcC------------------CCEEEEEcCCHHHHHHHHHhCc-------cc
Confidence 344443 346699999999999999998873 2599999999999998776532 22
Q ss_pred EEE-EcccccC---CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccc
Q 036563 155 LWV-EGDAEAL---CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPA 230 (288)
Q Consensus 155 ~~~-~~d~~~~---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (288)
... ..++... .++...+|.+.+..++.++ ..++++++++|+|||.+++.. .| .+........ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~--~p---~~e~~~~~~~-----~ 150 (232)
T 3opn_A 84 VVMEQFNFRNAVLADFEQGRPSFTSIDVSFISL---DLILPPLYEILEKNGEVAALI--KP---QFEAGREQVG-----K 150 (232)
T ss_dssp EEECSCCGGGCCGGGCCSCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE--CH---HHHSCHHHHC------
T ss_pred cccccceEEEeCHhHcCcCCCCEEEEEEEhhhH---HHHHHHHHHhccCCCEEEEEE--Cc---ccccCHHHhC-----c
Confidence 211 1122111 1111124555555444433 678999999999999999743 21 1111111110 0
Q ss_pred ccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 231 IGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
.| .+ .+.. .+..+.+++.++++++||+++.+...
T Consensus 151 ~G-~~-~d~~---------~~~~~~~~l~~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 151 NG-II-RDPK---------VHQMTIEKVLKTATQLGFSVKGLTFS 184 (232)
T ss_dssp CC-CC-CCHH---------HHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred CC-ee-cCcc---------hhHHHHHHHHHHHHHCCCEEEEEEEc
Confidence 00 00 0000 11126789999999999999887643
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-12 Score=110.28 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=87.1
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||||||+|..+..+++..+ ++.+++++|+++.+++.+++++...++. +++++..+|+
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~----------------~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~gda 131 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIP----------------DDGKITAIDFDREAYEIGLPFIRKAGVE-HKINFIESDA 131 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSC----------------TTCEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCH
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCH
Confidence 3467999999999999999999863 3689999999999999999999888775 6799999998
Q ss_pred ccC-C-C-----CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 162 EAL-C-F-----EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 162 ~~~-~-~-----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.+. + + +.++||+|++... ..+...+++.+.++|+|||.+++.
T Consensus 132 ~~~l~~l~~~~~~~~~fD~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 132 MLALDNLLQGQESEGSYDFGFVDAD---KPNYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp HHHHHHHHHSTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHhccCCCCCcCEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEe
Confidence 653 2 1 2468999998643 235678999999999999999864
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=7.5e-12 Score=115.78 Aligned_cols=121 Identities=21% Similarity=0.258 Sum_probs=96.6
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
....+...+...++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.+++++...++
T Consensus 234 ~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~-----------------~~~~v~a~D~~~~~l~~~~~~~~~~g~- 295 (429)
T 1sqg_A 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-----------------PEAQVVAVDIDEQRLSRVYDNLKRLGM- 295 (429)
T ss_dssp HHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHC-----------------TTCEEEEEESSTTTHHHHHHHHHHTTC-
T ss_pred HHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHc-----------------CCCEEEEECCCHHHHHHHHHHHHHcCC-
Confidence 33455667777888999999999999999999986 347999999999999999999888765
Q ss_pred CCceEEEEcccccCC--CCCCCeeEEEeccc------cccccCH----------------HHHHHHHHhhccCCcEEEEE
Q 036563 151 DKSLLWVEGDAEALC--FEDSTMDGYTIAFG------IRNVTHI----------------EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~--~~~~~~D~v~~~~~------l~~~~~~----------------~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.+..+|+...+ +++++||+|+++.. +++.++. ..+|+++.+.|||||.+++.
T Consensus 296 --~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvys 373 (429)
T 1sqg_A 296 --KATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYA 373 (429)
T ss_dssp --CCEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CeEEEeCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4788999988764 45568999997432 3333332 47899999999999999988
Q ss_pred eccCC
Q 036563 207 ELSHV 211 (288)
Q Consensus 207 ~~~~~ 211 (288)
+++..
T Consensus 374 tcs~~ 378 (429)
T 1sqg_A 374 TCSVL 378 (429)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 76653
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.8e-12 Score=105.88 Aligned_cols=103 Identities=12% Similarity=0.084 Sum_probs=79.3
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCC-CceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQE-ETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
..++.+|||+|||+|.++..+++..+ + ..+++++|+++.. .. +++.+.++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~----------------~~~~~v~gvD~s~~~-----------~~--~~v~~~~~ 70 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTK----------------NYKNKIIGIDKKIMD-----------PI--PNVYFIQG 70 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTT----------------TSCEEEEEEESSCCC-----------CC--TTCEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcC----------------CCCceEEEEeCCccC-----------CC--CCceEEEc
Confidence 35677999999999999999998862 1 4899999999832 11 47899999
Q ss_pred ccccCC-------------------------CCCCCeeEEEeccccccc----cCH-------HHHHHHHHhhccCCcEE
Q 036563 160 DAEALC-------------------------FEDSTMDGYTIAFGIRNV----THI-------EKALAEAYRVLKRGGRF 203 (288)
Q Consensus 160 d~~~~~-------------------------~~~~~~D~v~~~~~l~~~----~~~-------~~~l~~~~~~L~pgG~l 203 (288)
|+...+ +++++||+|+++..+++. .+. ..+++++.++|+|||.+
T Consensus 71 d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~l 150 (201)
T 2plw_A 71 EIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTY 150 (201)
T ss_dssp CTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred cccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEE
Confidence 987765 456789999998877653 122 23788999999999999
Q ss_pred EEEeccCCC
Q 036563 204 LCLELSHVD 212 (288)
Q Consensus 204 ~i~~~~~~~ 212 (288)
++..+....
T Consensus 151 v~~~~~~~~ 159 (201)
T 2plw_A 151 IVKMYLGSQ 159 (201)
T ss_dssp EEEEECSTT
T ss_pred EEEEeCCCC
Confidence 986554433
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.3e-12 Score=111.07 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=86.6
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..+|||||||+|.++..+++.+ +..+++++|+++.+++.+++.+.... .++++++.+|+..
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~-----------------p~~~v~~VEidp~vi~~Ar~~~~~~~--~~rv~v~~~Da~~ 150 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVY-----------------PQSRNTVVELDAELARLSREWFDIPR--APRVKIRVDDARM 150 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHS-----------------TTCEEEEEESCHHHHHHHHHHSCCCC--TTTEEEEESCHHH
T ss_pred CCEEEEEECCcCHHHHHHHHHC-----------------CCcEEEEEECCHHHHHHHHHhccccC--CCceEEEECcHHH
Confidence 3599999999999999999976 45799999999999999999875432 2689999999876
Q ss_pred C--CCCCCCeeEEEeccccccc-c-C--HHHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 164 L--CFEDSTMDGYTIAFGIRNV-T-H--IEKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 164 ~--~~~~~~~D~v~~~~~l~~~-~-~--~~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
+ ..++++||+|++....+.. . . ...+++.++++|+|||.+++.......
T Consensus 151 ~l~~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~ 205 (317)
T 3gjy_A 151 VAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSD 205 (317)
T ss_dssp HHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTT
T ss_pred HHhhccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcc
Confidence 5 2345789999986543321 1 1 267999999999999999976554443
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-12 Score=111.05 Aligned_cols=106 Identities=13% Similarity=0.148 Sum_probs=89.7
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...++. ++.++.+|
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~-----------------~~~~V~~vD~s~~av~~a~~n~~~n~l~--~~~~~~~d 177 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYS-----------------KPKLVYAIEKNPTAYHYLCENIKLNKLN--NVIPILAD 177 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-----------------CCSEEEEEECCHHHHHHHHHHHHHTTCS--SEEEEESC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhC-----------------CCCEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEECC
Confidence 4567899999999999999999885 2469999999999999999999888774 78899999
Q ss_pred cccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+.+.+. .++||+|+++... +...++..+.+.|+|||.+++.....
T Consensus 178 ~~~~~~-~~~~D~Vi~d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 178 NRDVEL-KDVADRVIMGYVH----KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp GGGCCC-TTCEEEEEECCCS----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred hHHcCc-cCCceEEEECCcc----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 988733 5689999988764 56778999999999999999765543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=111.97 Aligned_cols=111 Identities=18% Similarity=0.236 Sum_probs=88.7
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
..+...++.+|||+|||+|..+..+++..+ +..+++++|+++.+++.+++++...++. +++.+
T Consensus 54 ~l~~~~~~~~VLdiG~G~G~~~~~la~~~~----------------~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~ 116 (239)
T 2hnk_A 54 ILTKISGAKRIIEIGTFTGYSSLCFASALP----------------EDGKILCCDVSEEWTNVARKYWKENGLE-NKIFL 116 (239)
T ss_dssp HHHHHHTCSEEEEECCTTCHHHHHHHHHSC----------------TTCEEEEEESCHHHHHHHHHHHHHTTCG-GGEEE
T ss_pred HHHHhhCcCEEEEEeCCCCHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CCEEE
Confidence 333334577999999999999999999863 2589999999999999999998877765 46999
Q ss_pred EEcccccC-C--------------CCC--CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 157 VEGDAEAL-C--------------FED--STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 157 ~~~d~~~~-~--------------~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
..+|+... + +++ ++||+|++.... .+...+++++.++|+|||.+++.+
T Consensus 117 ~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 117 KLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK---ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp EESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCH---HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 99997652 1 122 689999987543 456788999999999999999754
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.5e-12 Score=109.84 Aligned_cols=107 Identities=18% Similarity=0.218 Sum_probs=81.7
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh--cCCCCCceEEEEcc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE--RGYPDKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~~~~~v~~~~~d 160 (288)
.+.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++.. .++..++++++.+|
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~-----------------~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D 152 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHD-----------------SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIAN 152 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTST-----------------TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESC
T ss_pred CCCEEEEEcCCcCHHHHHHHhcC-----------------CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECc
Confidence 45799999999999999998874 358999999999999999998754 22222689999999
Q ss_pred cccC-CCCCCCeeEEEecccccccc-----CHHHHHHHHHhhccCCcEEEEE
Q 036563 161 AEAL-CFEDSTMDGYTIAFGIRNVT-----HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 161 ~~~~-~~~~~~~D~v~~~~~l~~~~-----~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+... +...++||+|++........ ....+++++.++|+|||.+++.
T Consensus 153 ~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 153 GAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp HHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhhCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 8663 33456899999865422111 1267899999999999999974
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.1e-12 Score=113.50 Aligned_cols=107 Identities=15% Similarity=0.056 Sum_probs=86.8
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+| |+|.++..++... +..+++++|+++.|++.+++++...++. +++++.+|+
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~-----------------~~~~v~~vDi~~~~l~~a~~~~~~~g~~--~v~~~~~D~ 230 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSG-----------------LPKRIAVLDIDERLTKFIEKAANEIGYE--DIEIFTFDL 230 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHT-----------------CCSEEEEECSCHHHHHHHHHHHHHHTCC--CEEEECCCT
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEEChh
Confidence 4578999999 9999999987764 3479999999999999999999887763 799999999
Q ss_pred cc-CCC-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 162 EA-LCF-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 162 ~~-~~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
.. ++. .+++||+|+++..++.. +...+++++.++|+|||.+++.+..
T Consensus 231 ~~~l~~~~~~~fD~Vi~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 231 RKPLPDYALHKFDTFITDPPETLE-AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp TSCCCTTTSSCBSEEEECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred hhhchhhccCCccEEEECCCCchH-HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 87 553 34689999998776543 3578999999999999965444343
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=109.99 Aligned_cols=106 Identities=15% Similarity=0.168 Sum_probs=87.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|..+..+++..+ +..+++++|+++.+++.+++++...++. .+++++.+|+
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~----------------~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~i~~~~~d~ 130 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALP----------------ADGRVVTCEVDAQPPELGRPLWRQAEAE-HKIDLRLKPA 130 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSC----------------TTCEEEEEESCSHHHHHHHHHHHHTTCT-TTEEEEESCH
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHCCCC-CeEEEEEcCH
Confidence 4567999999999999999998763 3589999999999999999999887765 6899999998
Q ss_pred ccC--CCCC----CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 162 EAL--CFED----STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 162 ~~~--~~~~----~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.+. .+.. ++||+|++... ..+...+++++.++|+|||.+++.+
T Consensus 131 ~~~~~~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 131 LETLDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp HHHHHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 653 1111 57999998654 3456789999999999999998754
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-11 Score=107.97 Aligned_cols=107 Identities=19% Similarity=0.122 Sum_probs=84.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEcc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~d 160 (288)
.+.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++.+... ++..++++++.+|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~-----------------~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D 137 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHP-----------------SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDD 137 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-----------------TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESC
T ss_pred CCCEEEEECCchHHHHHHHHhCC-----------------CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECc
Confidence 45799999999999999998774 3479999999999999999987542 3333689999999
Q ss_pred cccC-CCCCCCeeEEEeccccccccC----HHHHHHHHHhhccCCcEEEEE
Q 036563 161 AEAL-CFEDSTMDGYTIAFGIRNVTH----IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 161 ~~~~-~~~~~~~D~v~~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+... +..+++||+|++....+..+. ...+++.+.++|+|||.+++.
T Consensus 138 ~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 138 GFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp SHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhhCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 8763 334568999999765432211 267899999999999999874
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=9.6e-12 Score=110.71 Aligned_cols=108 Identities=20% Similarity=0.233 Sum_probs=83.7
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh--cCCCCCceEEEEcc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE--RGYPDKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~~~~~v~~~~~d 160 (288)
++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++.. .++..++++++.+|
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~-----------------~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D 178 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYK-----------------SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIED 178 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCT-----------------TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESC
T ss_pred CCCEEEEEcCCccHHHHHHHHcC-----------------CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEcc
Confidence 45799999999999999998764 358999999999999999998765 22222689999999
Q ss_pred cccC-CCCCCCeeEEEecccccc--ccCH--HHHHHHHHhhccCCcEEEEEe
Q 036563 161 AEAL-CFEDSTMDGYTIAFGIRN--VTHI--EKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 161 ~~~~-~~~~~~~D~v~~~~~l~~--~~~~--~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+.+. +..+++||+|+++..-.. .... ..+++++.+.|+|||.+++..
T Consensus 179 ~~~~l~~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 179 ASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp HHHHHHHCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhhcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8663 223568999998753211 1111 689999999999999999743
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-11 Score=101.25 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=77.6
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
...++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++....++ ++.++.+
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~~------------------~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~ 104 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLLG------------------AKEVICVEVDKEAVDVLIENLGEFKG---KFKVFIG 104 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTT------------------CSEEEEEESCHHHHHHHHHHTGGGTT---SEEEEES
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHcC------------------CCEEEEEECCHHHHHHHHHHHHHcCC---CEEEEEC
Confidence 34567899999999999999988763 25899999999999999999877653 6999999
Q ss_pred ccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhc
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVL 197 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L 197 (288)
|+.+++ .+||+|+++..++... ....+++.+.+++
T Consensus 105 d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 105 DVSEFN---SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS 141 (207)
T ss_dssp CGGGCC---CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC
T ss_pred chHHcC---CCCCEEEEcCCCccccCCchHHHHHHHHHhc
Confidence 998864 4799999998877654 3356888888888
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.7e-12 Score=117.46 Aligned_cols=120 Identities=14% Similarity=0.194 Sum_probs=95.4
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+...+...++.+|||+|||+|..+..+++..+ +...|+++|+++.+++.+++++...++. +
T Consensus 96 l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~----------------~~g~V~AvDis~~rl~~~~~n~~r~g~~--n 157 (456)
T 3m4x_A 96 IVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMK----------------GKGLLVTNEIFPKRAKILSENIERWGVS--N 157 (456)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHT----------------TCSEEEEECSSHHHHHHHHHHHHHHTCS--S
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcC----------------CCCEEEEEeCCHHHHHHHHHHHHHcCCC--c
Confidence 445666778889999999999999999999874 3479999999999999999999988874 7
Q ss_pred eEEEEcccccCC-CCCCCeeEEEecccc------ccccCH----------------HHHHHHHHhhccCCcEEEEEeccC
Q 036563 154 LLWVEGDAEALC-FEDSTMDGYTIAFGI------RNVTHI----------------EKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 154 v~~~~~d~~~~~-~~~~~~D~v~~~~~l------~~~~~~----------------~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+.+..+|+..+. ..+++||.|+++... ..-++. ..+|.++.++|||||.++...++.
T Consensus 158 v~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 158 AIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp EEEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred eEEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 999999987764 235689999986542 111111 267999999999999999877655
Q ss_pred C
Q 036563 211 V 211 (288)
Q Consensus 211 ~ 211 (288)
.
T Consensus 238 ~ 238 (456)
T 3m4x_A 238 A 238 (456)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.1e-12 Score=116.84 Aligned_cols=118 Identities=17% Similarity=0.196 Sum_probs=94.1
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+...+...++.+|||+|||+|..+..+++..+ +.+.|+++|+++.+++.+++++...++ .
T Consensus 92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~----------------~~g~V~AvDis~~~l~~a~~n~~r~G~--~- 152 (464)
T 3m6w_A 92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMG----------------GKGLLLANEVDGKRVRGLLENVERWGA--P- 152 (464)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTT----------------TCSEEEEECSCHHHHHHHHHHHHHHCC--C-
T ss_pred HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHcCC--e-
Confidence 345566777889999999999999999999874 347999999999999999999988876 3
Q ss_pred eEEEEcccccCC-CCCCCeeEEEeccc------cccccCH----------------HHHHHHHHhhccCCcEEEEEeccC
Q 036563 154 LLWVEGDAEALC-FEDSTMDGYTIAFG------IRNVTHI----------------EKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 154 v~~~~~d~~~~~-~~~~~~D~v~~~~~------l~~~~~~----------------~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+.+..+|+..++ ...++||+|+++.. +...++. ..+|+++.++|||||.++...++.
T Consensus 153 v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 153 LAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CEEECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred EEEEECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 889999987764 23568999997433 2222221 668999999999999999876654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=115.65 Aligned_cols=118 Identities=16% Similarity=0.199 Sum_probs=93.7
Q ss_pred HHhhcCCC--CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 75 LVSKLNPF--PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 75 ~~~~l~~~--~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+...+... ++.+|||+|||+|..+..+++..+ +.+.|+++|+++.+++.+++++...++.
T Consensus 107 ~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~----------------~~g~V~avDis~~~l~~~~~n~~r~g~~-- 168 (479)
T 2frx_A 107 PVAALFADGNAPQRVMDVAAAPGSKTTQISARMN----------------NEGAILANEFSASRVKVLHANISRCGIS-- 168 (479)
T ss_dssp HHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTT----------------TCSEEEEECSSHHHHHHHHHHHHHHTCC--
T ss_pred HHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHcCCC--
Confidence 34556666 788999999999999999999863 3579999999999999999999888774
Q ss_pred ceEEEEcccccCCC-CCCCeeEEEeccc------cccccC----------------HHHHHHHHHhhccCCcEEEEEecc
Q 036563 153 SLLWVEGDAEALCF-EDSTMDGYTIAFG------IRNVTH----------------IEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 153 ~v~~~~~d~~~~~~-~~~~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
++.++.+|+..++. ..++||.|++... +...++ ...+|.++.++|||||.+++..++
T Consensus 169 nv~~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 169 NVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp SEEEECCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cEEEEeCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 79999999887643 4568999998432 222221 136799999999999999987765
Q ss_pred C
Q 036563 210 H 210 (288)
Q Consensus 210 ~ 210 (288)
.
T Consensus 249 ~ 249 (479)
T 2frx_A 249 L 249 (479)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-11 Score=111.06 Aligned_cols=108 Identities=21% Similarity=0.276 Sum_probs=84.8
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~ 159 (288)
.++.+|||||||+|..+..+++.. +..+++++|+++.+++.+++++... ++..++++++.+
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~-----------------~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~ 181 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHA-----------------SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIG 181 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-----------------TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEES
T ss_pred CCCCEEEEECCCccHHHHHHHHcC-----------------CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEC
Confidence 456799999999999999998874 3589999999999999999987642 332268999999
Q ss_pred ccccC--CCCCCCeeEEEecccc--ccccC--HHHHHHHHHhhccCCcEEEEE
Q 036563 160 DAEAL--CFEDSTMDGYTIAFGI--RNVTH--IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 160 d~~~~--~~~~~~~D~v~~~~~l--~~~~~--~~~~l~~~~~~L~pgG~l~i~ 206 (288)
|+... ..++++||+|+++... +...+ ...+++++.++|+|||.+++.
T Consensus 182 D~~~~l~~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 182 DGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp CHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred CHHHHHHhccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 98764 2345689999986542 11112 368999999999999999975
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-11 Score=99.33 Aligned_cols=90 Identities=14% Similarity=0.227 Sum_probs=71.6
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
...++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++.. +++++.+
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~~------------------~~~v~~vD~~~~~~~~a~~~~~-------~~~~~~~ 102 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLLG------------------AESVTAFDIDPDAIETAKRNCG-------GVNFMVA 102 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTT------------------BSEEEEEESCHHHHHHHHHHCT-------TSEEEEC
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHcC------------------CCEEEEEECCHHHHHHHHHhcC-------CCEEEEC
Confidence 34567899999999999999888762 2579999999999999998763 5889999
Q ss_pred ccccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhc
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVL 197 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L 197 (288)
|+.+++ ++||+|+++..+++..+ ...+++++.+.+
T Consensus 103 d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 103 DVSEIS---GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp CGGGCC---CCEEEEEECCCC-------CHHHHHHHHHHE
T ss_pred cHHHCC---CCeeEEEECCCchhccCchhHHHHHHHHHhc
Confidence 998764 58999999999888754 346888888888
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=109.77 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=81.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEcc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~d 160 (288)
++.+|||||||+|..+..+++.. +..+++++|+++.+++.+++++... ++..++++++.+|
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~-----------------~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D 170 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHE-----------------SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGD 170 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCT-----------------TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSC
T ss_pred CCCEEEEEcCCcCHHHHHHHHcC-----------------CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEECh
Confidence 45799999999999999998874 3589999999999999999987643 2222689999999
Q ss_pred cccC-CCCCCCeeEEEeccccccccC--H--HHHHHHHHhhccCCcEEEEE
Q 036563 161 AEAL-CFEDSTMDGYTIAFGIRNVTH--I--EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 161 ~~~~-~~~~~~~D~v~~~~~l~~~~~--~--~~~l~~~~~~L~pgG~l~i~ 206 (288)
+... +...++||+|++....+..+. . ..+++++.++|+|||.+++.
T Consensus 171 ~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~ 221 (314)
T 2b2c_A 171 GFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 221 (314)
T ss_dssp HHHHHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHhcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEE
Confidence 8763 334568999998664221111 1 67899999999999999964
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-11 Score=106.13 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=84.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC--CCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG--YPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~v~~~~~ 159 (288)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++.+...+ +..++++++.+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~-----------------~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~ 139 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYK-----------------SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIE 139 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-----------------TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEES
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcC-----------------CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEEC
Confidence 456799999999999999998764 35899999999999999999875432 21268999999
Q ss_pred ccccC-CCCCCCeeEEEecccccccc--CH--HHHHHHHHhhccCCcEEEEE
Q 036563 160 DAEAL-CFEDSTMDGYTIAFGIRNVT--HI--EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 160 d~~~~-~~~~~~~D~v~~~~~l~~~~--~~--~~~l~~~~~~L~pgG~l~i~ 206 (288)
|+... +...++||+|++....+..+ .. ..+++.++++|+|||.+++.
T Consensus 140 D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 140 DASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp CHHHHHHHCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred ChHHHHHhCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 98764 22356899999965433222 22 68999999999999999975
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.9e-11 Score=102.41 Aligned_cols=111 Identities=11% Similarity=0.137 Sum_probs=90.5
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
+..+...+. ++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++++..+++.
T Consensus 116 r~ri~~~~~--~g~~VlD~~aG~G~~~i~~a~~g------------------~~~V~avD~np~a~~~~~~N~~~N~v~- 174 (278)
T 3k6r_A 116 RVRMAKVAK--PDELVVDMFAGIGHLSLPIAVYG------------------KAKVIAIEKDPYTFKFLVENIHLNKVE- 174 (278)
T ss_dssp HHHHHHHCC--TTCEEEETTCTTTTTTHHHHHHT------------------CCEEEEECCCHHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHhcC--CCCEEEEecCcCcHHHHHHHHhc------------------CCeEEEEECCHHHHHHHHHHHHHcCCC-
Confidence 345555554 57899999999999999998873 378999999999999999999999887
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+++.++++|+.++.. .+.||.|+++... ....+|..+.++|++||.+.+.++
T Consensus 175 ~~v~~~~~D~~~~~~-~~~~D~Vi~~~p~----~~~~~l~~a~~~lk~gG~ih~~~~ 226 (278)
T 3k6r_A 175 DRMSAYNMDNRDFPG-ENIADRILMGYVV----RTHEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp TTEEEECSCTTTCCC-CSCEEEEEECCCS----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred CcEEEEeCcHHHhcc-ccCCCEEEECCCC----cHHHHHHHHHHHcCCCCEEEEEee
Confidence 789999999987753 4689999977542 345678888899999999876544
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-12 Score=123.09 Aligned_cols=107 Identities=17% Similarity=0.154 Sum_probs=88.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||||||+|.++..+++. +++|+|+|.++.+++.|+.+..+.+. .++.|.+++++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~-------------------ga~V~giD~~~~~i~~a~~~a~~~~~--~~~~~~~~~~~ 124 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK-------------------GATIVGIDFQQENINVCRALAEENPD--FAAEFRVGRIE 124 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT-------------------TCEEEEEESCHHHHHHHHHHHHTSTT--SEEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHhC-------------------CCEEEEECCCHHHHHHHHHHHHhcCC--CceEEEECCHH
Confidence 4679999999999999999987 38999999999999999999877654 37999999998
Q ss_pred cC--CCCCCCeeEEEeccccccccCHHH--HHHHHHhhccCCcEEEEEeccC
Q 036563 163 AL--CFEDSTMDGYTIAFGIRNVTHIEK--ALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 163 ~~--~~~~~~~D~v~~~~~l~~~~~~~~--~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
++ .+.+++||+|+|..+++|++++.. .+..+.+.|+++|..++..+..
T Consensus 125 ~~~~~~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 125 EVIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp HHHHHCCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred HHhhhccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 87 456678999999999999987653 3556777788888777655544
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-11 Score=104.73 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=81.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CC-------CCCc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GY-------PDKS 153 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~-------~~~~ 153 (288)
++.+|||||||+|..+..+++. + ..+++++|+++.+++.+++++ .. ++ ..++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~-----------------~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~ 135 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-D-----------------VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEK 135 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-C-----------------CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSS
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-C-----------------CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCc
Confidence 4579999999999999998887 3 479999999999999999987 33 22 2368
Q ss_pred eEEEEcccccC-CCCCCCeeEEEecccccccc--C--HHHHHHHHHhhccCCcEEEEE
Q 036563 154 LLWVEGDAEAL-CFEDSTMDGYTIAFGIRNVT--H--IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 154 v~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~~--~--~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++++.+|+... .. +++||+|++....+..+ . ...+++++.++|+|||.+++.
T Consensus 136 v~~~~~D~~~~l~~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 136 AKLTIGDGFEFIKN-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp EEEEESCHHHHHHH-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEECchHHHhcc-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 99999998653 22 56899999876532211 1 267899999999999999874
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.8e-11 Score=105.80 Aligned_cols=149 Identities=13% Similarity=0.054 Sum_probs=101.3
Q ss_pred HHHHHHHhHhhHHHhhh----hhhhhhhhhHHHHHHHHhhc-CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhccc
Q 036563 43 QLVSNVFSSVAKNYDLM----NDLMSGGLHRLWKDRLVSKL-NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVL 117 (288)
Q Consensus 43 ~~~~~~~~~~~~~y~~~----~~~~~~~~~~~~~~~~~~~l-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~ 117 (288)
..+..+|+.+...+... ...++...-..+...++..+ ...++.+|||+|||+|.++..+++.....
T Consensus 85 ~~~g~~ye~~~~~~~~~~~~~g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~--------- 155 (344)
T 2f8l_A 85 EEIRKGLQLALLKGMKHGIQVNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELK--------- 155 (344)
T ss_dssp HHHHHHHHHHHHHHTSSSCCGGGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTT---------
T ss_pred hHHHHHHHHHHHHHhhcccccCcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHh---------
Confidence 45677777766666541 11122111111112233333 44466799999999999999998886300
Q ss_pred ccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCH-----------
Q 036563 118 EDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI----------- 186 (288)
Q Consensus 118 ~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~----------- 186 (288)
......++|+|+++.+++.|+.++...+. ++.+..+|..... ..++||+|+++..+.+++..
T Consensus 156 ---~~~~~~v~GiDi~~~~~~~a~~n~~~~g~---~~~i~~~D~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~ 228 (344)
T 2f8l_A 156 ---GDVDVHASGVDVDDLLISLALVGADLQRQ---KMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCRE 228 (344)
T ss_dssp ---SSCEEEEEEEESCHHHHHHHHHHHHHHTC---CCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCS
T ss_pred ---cCCCceEEEEECCHHHHHHHHHHHHhCCC---CceEEECCCCCcc-ccCCccEEEECCCCCCcCchhhhhhccccCC
Confidence 00127899999999999999998876654 5788999976532 35689999999887654322
Q ss_pred -------HHHHHHHHhhccCCcEEEEEe
Q 036563 187 -------EKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 187 -------~~~l~~~~~~L~pgG~l~i~~ 207 (288)
..++.++.+.|+|||+++++.
T Consensus 229 ~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 229 EGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp SSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 257999999999999998764
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.5e-12 Score=111.00 Aligned_cols=109 Identities=20% Similarity=0.217 Sum_probs=83.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh--cCCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE--RGYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~~~~~v~~~~~ 159 (288)
.++.+|||||||+|..+..+++.. +..+++++|+++.+++.+++++.. .++..++++++.+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-----------------~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~ 156 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHP-----------------SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVG 156 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-----------------TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES
T ss_pred CCCCEEEEECCCchHHHHHHHHcC-----------------CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEEC
Confidence 446799999999999999998874 357999999999999999998764 2332268999999
Q ss_pred ccccC-CCCCCCeeEEEecccccccc----CHHHHHHHHHhhccCCcEEEEEe
Q 036563 160 DAEAL-CFEDSTMDGYTIAFGIRNVT----HIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 160 d~~~~-~~~~~~~D~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
|+... +..+++||+|++....+..+ ....+++++.++|+|||.+++..
T Consensus 157 Da~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 157 DGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp CHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred cHHHHHhhCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 98663 33457899999866533211 12468999999999999999754
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-11 Score=99.86 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=77.4
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE-Ec
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV-EG 159 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~-~~ 159 (288)
..++.+|||+|||+|.++..+++..+... .....+..+++++|+++.+ .. +++.+. .+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~--------~~~~~~~~~v~~vD~s~~~-----------~~--~~~~~~~~~ 78 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAG--------TDPSSPVGFVLGVDLLHIF-----------PL--EGATFLCPA 78 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTC--------CCTTSCCCEEEEECSSCCC-----------CC--TTCEEECSC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhcccc--------ccccCCCceEEEEechhcc-----------cC--CCCeEEEec
Confidence 35678999999999999999999863000 0000011789999999842 11 467888 88
Q ss_pred ccccCC--------CCCCCeeEEEeccccccc----cCH-------HHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 160 DAEALC--------FEDSTMDGYTIAFGIRNV----THI-------EKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 160 d~~~~~--------~~~~~~D~v~~~~~l~~~----~~~-------~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
|+.... +++++||+|++...++.. .+. ..+++++.++|+|||.+++..+....
T Consensus 79 d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 150 (196)
T 2nyu_A 79 DVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ 150 (196)
T ss_dssp CTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGG
T ss_pred cCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 876542 334589999997654432 222 47899999999999999987765543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=8.3e-12 Score=110.82 Aligned_cols=108 Identities=20% Similarity=0.190 Sum_probs=85.5
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--C-CCCCceEEEEc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--G-YPDKSLLWVEG 159 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~-~~~~~v~~~~~ 159 (288)
++.+|||||||+|..+..+++.. +..+++++|+++.+++.+++++... + +..++++++.+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~-----------------~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~ 139 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHP-----------------TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID 139 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTST-----------------TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES
T ss_pred CCCeEEEEcCCcCHHHHHHHhcC-----------------CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEc
Confidence 45799999999999999998874 3579999999999999999987541 1 21268999999
Q ss_pred ccccC-CCCCCCeeEEEecccccc---cc--C--HHHHHHHHHhhccCCcEEEEEe
Q 036563 160 DAEAL-CFEDSTMDGYTIAFGIRN---VT--H--IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 160 d~~~~-~~~~~~~D~v~~~~~l~~---~~--~--~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
|+... +..+++||+|++....+. -+ . ...++++++++|+|||.+++..
T Consensus 140 D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 140 DARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp CHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred hHHHHHHhcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 98763 334578999999876543 11 1 3688999999999999999753
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-11 Score=105.98 Aligned_cols=114 Identities=20% Similarity=0.296 Sum_probs=87.0
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..+.+.+++.+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....+
T Consensus 14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-------------------~~v~~vD~~~~~~~~a~~~~~~~~ 74 (285)
T 1zq9_A 14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-------------------KKVVACELDPRLVAELHKRVQGTP 74 (285)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-------------------SEEEEEESCHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC-------------------CEEEEEECCHHHHHHHHHHHHhcC
Confidence 4455677788887788899999999999999999874 689999999999999999886554
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHH-HHH--------------HHH--HhhccCCcEEE
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIE-KAL--------------AEA--YRVLKRGGRFL 204 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~-~~l--------------~~~--~~~L~pgG~l~ 204 (288)
.. ++++++.+|+.+.+++ .||+|+++..++...+.. .++ +++ +++++|||.++
T Consensus 75 ~~-~~v~~~~~D~~~~~~~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 75 VA-SKLQVLVGDVLKTDLP--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp TG-GGEEEEESCTTTSCCC--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred CC-CceEEEEcceecccch--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 43 4799999999887655 699999976654432221 222 222 36899999654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.7e-11 Score=101.22 Aligned_cols=111 Identities=13% Similarity=0.030 Sum_probs=89.4
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.+.++ ++.+|||||||+|-++..++... +..+|+++|+++.|++.++.++...++
T Consensus 124 ~~i~~~i~--~p~~VLDLGCG~GpLAl~~~~~~-----------------p~a~y~a~DId~~~le~a~~~l~~~g~--- 181 (281)
T 3lcv_B 124 RELFRHLP--RPNTLRDLACGLNPLAAPWMGLP-----------------AETVYIASDIDARLVGFVDEALTRLNV--- 181 (281)
T ss_dssp HHHGGGSC--CCSEEEETTCTTGGGCCTTTTCC-----------------TTCEEEEEESBHHHHHHHHHHHHHTTC---
T ss_pred HHHHhccC--CCceeeeeccCccHHHHHHHhhC-----------------CCCEEEEEeCCHHHHHHHHHHHHhcCC---
Confidence 34445553 35699999999999999888875 568999999999999999999988775
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEe
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+..+...|....+ +.++||+++++-+++++++- ...+ ++...|+++|.++-.+
T Consensus 182 ~~~~~v~D~~~~~-p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp 236 (281)
T 3lcv_B 182 PHRTNVADLLEDR-LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFP 236 (281)
T ss_dssp CEEEEECCTTTSC-CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEE
T ss_pred CceEEEeeecccC-CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEecc
Confidence 4788888876544 45689999999999998654 2345 8999999999998543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.1e-12 Score=109.59 Aligned_cols=112 Identities=12% Similarity=0.049 Sum_probs=78.6
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh-hcCCCCCceE
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL-ERGYPDKSLL 155 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~v~ 155 (288)
+.....++.+|||+|||+|.++..+++. .+|+++|+++ |+..+++... ..... .++.
T Consensus 76 ~~~~~~~g~~VLDlGcGtG~~s~~la~~--------------------~~V~gVD~s~-m~~~a~~~~~~~~~~~-~~v~ 133 (276)
T 2wa2_A 76 ERGGVELKGTVVDLGCGRGSWSYYAASQ--------------------PNVREVKAYT-LGTSGHEKPRLVETFG-WNLI 133 (276)
T ss_dssp HTTSCCCCEEEEEESCTTCHHHHHHHTS--------------------TTEEEEEEEC-CCCTTSCCCCCCCCTT-GGGE
T ss_pred HcCCCCCCCEEEEeccCCCHHHHHHHHc--------------------CCEEEEECch-hhhhhhhchhhhhhcC-CCeE
Confidence 3333456789999999999999888775 5799999998 5432221100 00010 2688
Q ss_pred EE--EcccccCCCCCCCeeEEEeccccccccCH----H---HHHHHHHhhccCCc--EEEEEeccCCChH
Q 036563 156 WV--EGDAEALCFEDSTMDGYTIAFGIRNVTHI----E---KALAEAYRVLKRGG--RFLCLELSHVDIP 214 (288)
Q Consensus 156 ~~--~~d~~~~~~~~~~~D~v~~~~~l~~~~~~----~---~~l~~~~~~L~pgG--~l~i~~~~~~~~~ 214 (288)
++ ++|+..++ +++||+|++..+ +...+. . .+|+.+.++|+||| .|++..+. +..+
T Consensus 134 ~~~~~~D~~~l~--~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~-~~~~ 199 (276)
T 2wa2_A 134 TFKSKVDVTKME--PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN-PYSC 199 (276)
T ss_dssp EEECSCCGGGCC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC-CCSH
T ss_pred EEeccCcHhhCC--CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC-CCch
Confidence 88 89998765 578999999877 433221 1 37899999999999 99887666 5544
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.2e-11 Score=107.24 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=84.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++.. +.. ..+++++|+|+.+++.+++++...++. +++.++.+|+.
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~~-------------------~~~V~~vD~s~~ai~~a~~n~~~n~l~-~~v~~~~~D~~ 253 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CKN-------------------AKKIYAIDINPHAIELLKKNIKLNKLE-HKIIPILSDVR 253 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TTT-------------------SSEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCGG
T ss_pred CCCEEEEccCccCHHHHh-ccC-------------------CCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECChH
Confidence 578999999999999988 663 379999999999999999999888875 58999999998
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+.. ++||+|+++.... ...++..+.++|+|||.+++.++..
T Consensus 254 ~~~---~~fD~Vi~dpP~~----~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 254 EVD---VKGNRVIMNLPKF----AHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp GCC---CCEEEEEECCTTT----GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred Hhc---CCCcEEEECCcHh----HHHHHHHHHHHcCCCCEEEEEEeec
Confidence 765 6899999865322 2378889999999999999876655
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-11 Score=104.05 Aligned_cols=97 Identities=14% Similarity=0.035 Sum_probs=79.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEcc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~d 160 (288)
.+.+|||||||+|..+..+++. + .+++++|+++.+++.+++.+... ++..+++++..+|
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~------------------~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D 132 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY------------------D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQL 132 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS------------------S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSG
T ss_pred CCCEEEEEeCCcCHHHHHHHhC------------------C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEech
Confidence 4579999999999999888776 2 79999999999999998775431 1222689999999
Q ss_pred cccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+.... ++||+|++.. .++..+++.+.+.|+|||.+++.
T Consensus 133 ~~~~~---~~fD~Ii~d~-----~dp~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 133 LDLDI---KKYDLIFCLQ-----EPDIHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp GGSCC---CCEEEEEESS-----CCCHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHH---hhCCEEEECC-----CChHHHHHHHHHhcCCCcEEEEE
Confidence 87654 6899999863 45566999999999999999874
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-10 Score=105.67 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=88.5
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC-CCCceEEEEcc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY-PDKSLLWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~v~~~~~d 160 (288)
.++.+|||+|||+|.++..++... ..+++++|+++.+++.+++++...++ . ++++++.+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g------------------~~~V~~vD~s~~al~~a~~n~~~ngl~~-~~v~~~~~D 279 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG------------------CSQVVSVDTSQEALDIARQNVELNKLDL-SKAEFVRDD 279 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT------------------CSEEEEEESCHHHHHHHHHHHHHTTCCG-GGEEEEESC
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC------------------CCEEEEEECCHHHHHHHHHHHHHcCCCc-cceEEEECC
Confidence 357799999999999999998863 26899999999999999999988776 4 479999999
Q ss_pred cccCCC----CCCCeeEEEecccc---------ccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 161 AEALCF----EDSTMDGYTIAFGI---------RNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 161 ~~~~~~----~~~~~D~v~~~~~l---------~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+.+... ...+||+|+++... ....+...++.++.+.|+|||.+++.....
T Consensus 280 ~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 280 VFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 876521 14579999997543 122456788999999999999999765543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.1e-11 Score=104.25 Aligned_cols=97 Identities=12% Similarity=-0.001 Sum_probs=71.0
Q ss_pred hcCCCCCCeEEEecC------CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 78 KLNPFPGMKHLDVAG------GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~------G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+...++.+|||+|| |+|. ..+++..+ +..+|+++|+++. +
T Consensus 58 ~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~----------------~~~~V~gvDis~~--------v------- 104 (290)
T 2xyq_A 58 TLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLP----------------TGTLLVDSDLNDF--------V------- 104 (290)
T ss_dssp CCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSC----------------TTCEEEEEESSCC--------B-------
T ss_pred hcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcC----------------CCCEEEEEECCCC--------C-------
Confidence 345677889999999 4466 44445442 3589999999997 1
Q ss_pred CceEE-EEcccccCCCCCCCeeEEEecccccc-----------ccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 152 KSLLW-VEGDAEALCFEDSTMDGYTIAFGIRN-----------VTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 152 ~~v~~-~~~d~~~~~~~~~~~D~v~~~~~l~~-----------~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+++.+ +++|+.++++. ++||+|+++...+. ......+++++.++|||||.|++..+
T Consensus 105 ~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 105 SDADSTLIGDCATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp CSSSEEEESCGGGCCCS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCEEEEECccccCCcc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 36788 99999887654 57999999754221 11135789999999999999997543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-11 Score=100.21 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=76.4
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..++.+|||+|||+|.++..+++. . .+|+++|+++.. .. +++.++++|
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~-~------------------~~V~gvD~~~~~-----------~~--~~v~~~~~D 70 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL-A------------------RKIISIDLQEME-----------EI--AGVRFIRCD 70 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT-C------------------SEEEEEESSCCC-----------CC--TTCEEEECC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc-C------------------CcEEEEeccccc-----------cC--CCeEEEEcc
Confidence 356789999999999999998887 2 899999999852 11 579999999
Q ss_pred cccCCC--------C---CCCeeEEEecccccccc----C-------HHHHHHHHHhhccCCcEEEEEeccCCChH
Q 036563 161 AEALCF--------E---DSTMDGYTIAFGIRNVT----H-------IEKALAEAYRVLKRGGRFLCLELSHVDIP 214 (288)
Q Consensus 161 ~~~~~~--------~---~~~~D~v~~~~~l~~~~----~-------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 214 (288)
+.+.+. . .++||+|+++....... + ...+++.+.++|+|||.|++..+..+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~ 146 (191)
T 3dou_A 71 IFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTN 146 (191)
T ss_dssp TTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHH
T ss_pred ccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHH
Confidence 877531 1 13899999976432211 1 24678899999999999998766655433
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-11 Score=110.11 Aligned_cols=111 Identities=12% Similarity=-0.030 Sum_probs=86.5
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..++... ..+++++|+|+.+++.+++++...++...+++++.+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g------------------a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~ 272 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG------------------AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV 272 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT------------------BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC------------------CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCH
Confidence 457799999999999999998753 25899999999999999999988877522899999998
Q ss_pred ccC-C-C--CCCCeeEEEeccccc-----cccC----HHHHHHHHHhhccCCcEEEEEeccC
Q 036563 162 EAL-C-F--EDSTMDGYTIAFGIR-----NVTH----IEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 162 ~~~-~-~--~~~~~D~v~~~~~l~-----~~~~----~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.+. + . ...+||+|++..... ...+ ...++..+.++|+|||.+++.....
T Consensus 273 ~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 273 FDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 763 2 1 245799999965542 2222 3457788899999999998765544
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.2e-12 Score=108.17 Aligned_cols=114 Identities=12% Similarity=0.054 Sum_probs=78.9
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHh-hhcCCCCCc
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRA-LERGYPDKS 153 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~ 153 (288)
+.+.....++.+|||+|||+|.++..+++. .+|+++|+++ |+..+++.. ...... .+
T Consensus 66 i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--------------------~~V~gvD~s~-m~~~a~~~~~~~~~~~-~~ 123 (265)
T 2oxt_A 66 MEERGYVELTGRVVDLGCGRGGWSYYAASR--------------------PHVMDVRAYT-LGVGGHEVPRITESYG-WN 123 (265)
T ss_dssp HHHHTSCCCCEEEEEESCTTSHHHHHHHTS--------------------TTEEEEEEEC-CCCSSCCCCCCCCBTT-GG
T ss_pred HHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--------------------CcEEEEECch-hhhhhhhhhhhhhccC-CC
Confidence 333334456789999999999999888765 5799999998 532221110 000000 16
Q ss_pred eEEE--EcccccCCCCCCCeeEEEeccccccccCH----H---HHHHHHHhhccCCc--EEEEEeccCCChH
Q 036563 154 LLWV--EGDAEALCFEDSTMDGYTIAFGIRNVTHI----E---KALAEAYRVLKRGG--RFLCLELSHVDIP 214 (288)
Q Consensus 154 v~~~--~~d~~~~~~~~~~~D~v~~~~~l~~~~~~----~---~~l~~~~~~L~pgG--~l~i~~~~~~~~~ 214 (288)
+.++ ++|+..++ +++||+|++..+ ++..+. . .+|+.+.++|+||| .|++..+. +..+
T Consensus 124 v~~~~~~~D~~~l~--~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~-~~~~ 191 (265)
T 2oxt_A 124 IVKFKSRVDIHTLP--VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC-PYSV 191 (265)
T ss_dssp GEEEECSCCTTTSC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC-TTSH
T ss_pred eEEEecccCHhHCC--CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC-CCCh
Confidence 8888 89988765 568999999877 443322 1 37899999999999 99987776 5444
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-10 Score=104.73 Aligned_cols=107 Identities=21% Similarity=0.158 Sum_probs=83.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..++... +.++++|+|+.+++.+++++...++. ..+..+|+.
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~g-------------------a~V~avDis~~al~~a~~n~~~ng~~---~~~~~~D~~ 271 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKG-------------------AYALAVDKDLEALGVLDQAALRLGLR---VDIRHGEAL 271 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTT-------------------CEEEEEESCHHHHHHHHHHHHHHTCC---CEEEESCHH
T ss_pred CCCeEEEcccchhHHHHHHHHcC-------------------CeEEEEECCHHHHHHHHHHHHHhCCC---CcEEEccHH
Confidence 57899999999999999998863 45999999999999999999888764 346688887
Q ss_pred cC-CCCCCCeeEEEecccccc---------ccCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 163 AL-CFEDSTMDGYTIAFGIRN---------VTHIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 163 ~~-~~~~~~~D~v~~~~~l~~---------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
+. +...+.||+|+++..... ..+...++..+.++|+|||.+++...+..
T Consensus 272 ~~l~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 272 PTLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp HHHHTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred HHHHHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 64 222334999999765311 12345788999999999999997766554
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-10 Score=106.03 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=106.5
Q ss_pred HHHHHHHhHhhHHHhhhhhhhhhh--hhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccc
Q 036563 43 QLVSNVFSSVAKNYDLMNDLMSGG--LHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120 (288)
Q Consensus 43 ~~~~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~ 120 (288)
..+..+|+.....+....+...+. ..+...+.+++.+.+.++.+|+|+|||+|.++..+++.......... ...
T Consensus 129 d~~G~~yE~ll~~~~~~~~~~~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~----~~~ 204 (445)
T 2okc_A 129 DVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKE----KRD 204 (445)
T ss_dssp HHHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCH----HHH
T ss_pred hHHHHHHHHHHHHHHhhccccCCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHH----HHH
Confidence 345666666555554221110111 12445567778887777889999999999999998887521000000 000
Q ss_pred cCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccC---------------
Q 036563 121 LQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--------------- 185 (288)
Q Consensus 121 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--------------- 185 (288)
......++|+|+++.+++.|+.++...++...++.+.++|....+.. .+||+|+++..+.....
T Consensus 205 ~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~ 283 (445)
T 2okc_A 205 FLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETK 283 (445)
T ss_dssp HHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCS
T ss_pred hhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCc
Confidence 00126799999999999999998877765312677889998765543 38999999987665321
Q ss_pred --HHHHHHHHHhhccCCcEEEEEec
Q 036563 186 --IEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 186 --~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
...+++++.+.|+|||++.++..
T Consensus 284 ~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 284 NNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chHHHHHHHHHHHhccCCEEEEEEC
Confidence 13689999999999999987653
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.5e-11 Score=115.66 Aligned_cols=108 Identities=14% Similarity=0.108 Sum_probs=87.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..++... ..+++++|+|+.+++.+++++..+++...+++++++|+.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g------------------a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~ 600 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG------------------ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCL 600 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT------------------CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHH
T ss_pred CCCcEEEeeechhHHHHHHHHCC------------------CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence 47799999999999999988753 257999999999999999999888775347999999987
Q ss_pred cC-CCCCCCeeEEEecccc-----------ccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 163 AL-CFEDSTMDGYTIAFGI-----------RNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 163 ~~-~~~~~~~D~v~~~~~l-----------~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+. +...++||+|+++... ....+...++..+.++|+|||.+++...
T Consensus 601 ~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 601 AWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp HHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 63 3345689999997642 2223456789999999999999996543
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.21 E-value=6.4e-11 Score=108.40 Aligned_cols=110 Identities=18% Similarity=0.147 Sum_probs=88.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..++... ..+++++|+++.+++.+++++...++. +++.++.+|+.
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g------------------~~~v~~vD~s~~~l~~a~~n~~~n~~~-~~v~~~~~d~~ 277 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAG------------------ADEVIGIDKSPRAIETAKENAKLNGVE-DRMKFIVGSAF 277 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTT------------------CSEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHH
T ss_pred CCCeEEEecCCCCHHHHHHHHCC------------------CCEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEECCHH
Confidence 57899999999999999998862 268999999999999999999887764 48999999987
Q ss_pred cCCC----CCCCeeEEEeccccccc---------cCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 163 ALCF----EDSTMDGYTIAFGIRNV---------THIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 163 ~~~~----~~~~~D~v~~~~~l~~~---------~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
+... ...+||+|+++...... .+...++.++.++|+|||.+++...+..
T Consensus 278 ~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 278 EEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred HHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 6521 24689999997543221 3456789999999999999998776654
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4e-10 Score=104.31 Aligned_cols=111 Identities=13% Similarity=0.162 Sum_probs=86.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.+.+.+.+.+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.|+++....++
T Consensus 273 ~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~-------------------~~V~gvD~s~~al~~A~~n~~~~~~ 333 (433)
T 1uwv_A 273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-------------------ASVVGVEGVPALVEKGQQNARLNGL 333 (433)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-------------------SEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhC-------------------CEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 344556666766677899999999999999998873 7999999999999999999988776
Q ss_pred CCCceEEEEcccccC----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 150 PDKSLLWVEGDAEAL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
. ++.+..+|+.+. ++.+++||+|+++...... ..+++.+.+ ++|++.+++
T Consensus 334 ~--~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyv 387 (433)
T 1uwv_A 334 Q--NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYV 387 (433)
T ss_dssp C--SEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEE
T ss_pred C--ceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEE
Confidence 4 899999998773 3455689999987664433 245555543 688887775
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=9e-11 Score=106.89 Aligned_cols=108 Identities=20% Similarity=0.188 Sum_probs=87.7
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||+|||+|.++..++... .+++++|+++.+++.+++++...++. ++.++.+|+.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~-------------------~~v~~vD~s~~~~~~a~~n~~~n~~~--~~~~~~~d~~ 267 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGF-------------------REVVAVDSSAEALRRAEENARLNGLG--NVRVLEANAF 267 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE-------------------EEEEEEESCHHHHHHHHHHHHHTTCT--TEEEEESCHH
T ss_pred CCCeEEEeeeccCHHHHHHHHhC-------------------CEEEEEECCHHHHHHHHHHHHHcCCC--CceEEECCHH
Confidence 56799999999999999998873 79999999999999999999888775 5999999987
Q ss_pred cCCC----CCCCeeEEEeccccccc---------cCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 163 ALCF----EDSTMDGYTIAFGIRNV---------THIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 163 ~~~~----~~~~~D~v~~~~~l~~~---------~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
+... ...+||+|++....... .+...++..+.++|+|||.+++...+..
T Consensus 268 ~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 268 DLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred HHHHHHHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 6521 25689999996543221 2346789999999999999998766543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=101.77 Aligned_cols=110 Identities=25% Similarity=0.321 Sum_probs=81.1
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..+.+.+++.+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....+
T Consensus 28 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~-------------------~~v~~vDi~~~~~~~a~~~~~~~~ 88 (299)
T 2h1r_A 28 PGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLA-------------------KKVITIDIDSRMISEVKKRCLYEG 88 (299)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTS-------------------SEEEEECSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcC-------------------CEEEEEECCHHHHHHHHHHHHHcC
Confidence 4455667777777788899999999999999988763 799999999999999999887655
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccccccCH-HHHH---------------HHHHhhccCCc
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI-EKAL---------------AEAYRVLKRGG 201 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~-~~~l---------------~~~~~~L~pgG 201 (288)
+ ++++++.+|+...+++ +||+|+++...+..... ...+ +.+.++++++|
T Consensus 89 ~--~~v~~~~~D~~~~~~~--~~D~Vv~n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 89 Y--NNLEVYEGDAIKTVFP--KFDVCTANIPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp C--CCEEC----CCSSCCC--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred C--CceEEEECchhhCCcc--cCCEEEEcCCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 5 4799999999877653 79999998765533221 2333 34667888766
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-10 Score=99.51 Aligned_cols=90 Identities=13% Similarity=0.170 Sum_probs=77.5
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..+.+.+++.+...++.+|||||||+|.++..+++.. .+++++|+++.+++.+++++...
T Consensus 36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~-------------------~~V~aVEid~~li~~a~~~~~~~- 95 (295)
T 3gru_A 36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNA-------------------KKVYVIEIDKSLEPYANKLKELY- 95 (295)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-------------------SEEEEEESCGGGHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC-------------------CEEEEEECCHHHHHHHHHHhccC-
Confidence 4556778888888888999999999999999999873 79999999999999999988643
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccc
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIR 181 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~ 181 (288)
++++++.+|+.++++++..||.|+++..++
T Consensus 96 ---~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 96 ---NNIEIIWGDALKVDLNKLDFNKVVANLPYQ 125 (295)
T ss_dssp ---SSEEEEESCTTTSCGGGSCCSEEEEECCGG
T ss_pred ---CCeEEEECchhhCCcccCCccEEEEeCccc
Confidence 589999999998887777899999887654
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-09 Score=90.17 Aligned_cols=102 Identities=15% Similarity=0.035 Sum_probs=82.8
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..+. . ...|+++|+++.+++.+++.....+ .+..+...|.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~------------------~~~y~a~DId~~~i~~ar~~~~~~g---~~~~~~v~D~ 160 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--G------------------IASVWGCDIHQGLGDVITPFAREKD---WDFTFALQDV 160 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--T------------------CSEEEEEESBHHHHHHHHHHHHHTT---CEEEEEECCT
T ss_pred CCCCeEEEecCCccHHHHHhc--c------------------CCeEEEEeCCHHHHHHHHHHHHhcC---CCceEEEeec
Confidence 456799999999999998877 2 3899999999999999999987766 4688999998
Q ss_pred ccCCCCCCCeeEEEeccccccccCH-HHHHHHHHhhccCCcEEEEEe
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHI-EKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~-~~~l~~~~~~L~pgG~l~i~~ 207 (288)
...+.+ +++|+|++.-++|++++. ...+-++...|+++|.++-.+
T Consensus 161 ~~~~~~-~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 161 LCAPPA-EAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp TTSCCC-CBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred ccCCCC-CCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence 876655 489999999888888643 223338888999999888543
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-10 Score=103.23 Aligned_cols=104 Identities=14% Similarity=0.060 Sum_probs=72.4
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeC----ChhHHHHHHHHhhhcCCCCCceEE
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDI----NPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~----s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
..++.+|||+|||+|.++..+++. .+|+++|+ ++.++... .......+++.+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~--------------------~~V~gvD~~~~~~~~~~~~~----~~~~~~~~~v~~ 135 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL--------------------KNVREVKGLTKGGPGHEEPI----PMSTYGWNLVRL 135 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS--------------------TTEEEEEEECCCSTTSCCCC----CCCSTTGGGEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc--------------------CCEEEEeccccCchhHHHHH----HhhhcCCCCeEE
Confidence 456789999999999999888775 46899998 55443211 011111147889
Q ss_pred EEc-ccccCCCCCCCeeEEEeccccc---cccCHH---HHHHHHHhhccCCcEEEEEeccC
Q 036563 157 VEG-DAEALCFEDSTMDGYTIAFGIR---NVTHIE---KALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 157 ~~~-d~~~~~~~~~~~D~v~~~~~l~---~~~~~~---~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+.+ |+..++ .++||+|+|..+++ +..+.. .+|..+.++|+|||.|++..+..
T Consensus 136 ~~~~D~~~l~--~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 136 QSGVDVFFIP--PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp ECSCCTTTSC--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred EeccccccCC--cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 988 887654 46899999987653 111222 57888999999999998754443
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.08 E-value=3.7e-09 Score=93.40 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=89.2
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+...+...++.+|||+|||+|..+..+++..+ +..+|+++|+++.+++.+++++...++. +
T Consensus 93 l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~----------------~~g~V~a~D~~~~~l~~~~~n~~r~g~~--~ 154 (309)
T 2b9e_A 93 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLK----------------NQGKIFAFDLDAKRLASMATLLARAGVS--C 154 (309)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHT----------------TCSEEEEEESCHHHHHHHHHHHHHTTCC--S
T ss_pred HHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhC----------------CCCEEEEEeCCHHHHHHHHHHHHHcCCC--e
Confidence 344566778889999999999999999999863 3579999999999999999999888774 7
Q ss_pred eEEEEcccccCCCCC---CCeeEEEeccc------ccccc-----------CH-------HHHHHHHHhhccCCcEEEEE
Q 036563 154 LLWVEGDAEALCFED---STMDGYTIAFG------IRNVT-----------HI-------EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 154 v~~~~~d~~~~~~~~---~~~D~v~~~~~------l~~~~-----------~~-------~~~l~~~~~~L~pgG~l~i~ 206 (288)
+.++.+|+..+.... .+||.|++... +..-+ +. ..+|..+.++++ ||.++..
T Consensus 155 v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYs 233 (309)
T 2b9e_A 155 CELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYS 233 (309)
T ss_dssp EEEEECCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEE
T ss_pred EEEEeCChHhcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEE
Confidence 999999988764321 47999998432 21111 11 236777777786 9998877
Q ss_pred eccC
Q 036563 207 ELSH 210 (288)
Q Consensus 207 ~~~~ 210 (288)
.++.
T Consensus 234 TCs~ 237 (309)
T 2b9e_A 234 TCSL 237 (309)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 6664
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.08 E-value=9.8e-10 Score=93.90 Aligned_cols=89 Identities=7% Similarity=0.175 Sum_probs=71.6
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
+..+.+.+++.+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....
T Consensus 15 d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-------------------~~v~~vD~~~~~~~~a~~~~~~~ 75 (244)
T 1qam_A 15 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-------------------NFVTAIEIDHKLCKTTENKLVDH 75 (244)
T ss_dssp CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-------------------SEEEEECSCHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-------------------CeEEEEECCHHHHHHHHHhhccC
Confidence 34556778888887788899999999999999999874 78999999999999999887542
Q ss_pred CCCCCceEEEEcccccCCCCC-CCeeEEEecccc
Q 036563 148 GYPDKSLLWVEGDAEALCFED-STMDGYTIAFGI 180 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~l 180 (288)
++++++.+|+.++++++ ..| .|+++...
T Consensus 76 ----~~v~~~~~D~~~~~~~~~~~~-~vv~nlPy 104 (244)
T 1qam_A 76 ----DNFQVLNKDILQFKFPKNQSY-KIFGNIPY 104 (244)
T ss_dssp ----CSEEEECCCGGGCCCCSSCCC-EEEEECCG
T ss_pred ----CCeEEEEChHHhCCcccCCCe-EEEEeCCc
Confidence 58999999999887664 345 45555543
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.7e-09 Score=93.41 Aligned_cols=185 Identities=17% Similarity=0.186 Sum_probs=107.6
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC----------CCCc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY----------PDKS 153 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----------~~~~ 153 (288)
..+|+|+|||+|..+..+....-. ..+..... .+.-+|...++..|.-.+.....-+.+....- ...+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~-~i~~~~~~-~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~ 130 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVK-HISKRFDA-AGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNR 130 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHH-HHHHHHHH-TTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCB
T ss_pred ceEEEecCCCCChhHHHHHHHHHH-HHHHHHhh-cCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCC
Confidence 478999999999999888665421 00000000 11224678999999988887766655543210 0012
Q ss_pred eEEEEccccc---CCCCCCCeeEEEecccccccc--------------------------------------CHHHHHHH
Q 036563 154 LLWVEGDAEA---LCFEDSTMDGYTIAFGIRNVT--------------------------------------HIEKALAE 192 (288)
Q Consensus 154 v~~~~~d~~~---~~~~~~~~D~v~~~~~l~~~~--------------------------------------~~~~~l~~ 192 (288)
..|..+...+ -.+|++++|+|+++.++|++. |...+|+.
T Consensus 131 ~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 131 SYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp CSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2344443333 357889999999999999986 23346889
Q ss_pred HHhhccCCcEEEEEeccCCChH-----H----H-HHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHH
Q 036563 193 AYRVLKRGGRFLCLELSHVDIP-----V----F-KELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMI 262 (288)
Q Consensus 193 ~~~~L~pgG~l~i~~~~~~~~~-----~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 262 (288)
.++.|+|||.+++.-....+.. . + ..+...+..-+. -| +... +.... .+....+++.+++++++
T Consensus 211 ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~--eG-~i~~--e~~d~-f~~P~y~ps~~E~~~~l 284 (374)
T 3b5i_A 211 RAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVR--EG-LVAA--EKRDG-FNIPVYAPSLQDFKEVV 284 (374)
T ss_dssp HHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTS--SS-SSCH--HHHSS-CCCCBCCCCHHHHHHHH
T ss_pred HHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHH--hC-Ccch--hhccc-CCccccCCCHHHHHHHH
Confidence 9999999999998766554321 0 0 111111110000 00 0000 00000 00012257999999999
Q ss_pred H-HcCCcEEEEEEee
Q 036563 263 S-DAGFQKVEYENLV 276 (288)
Q Consensus 263 ~-~aGf~~v~~~~~~ 276 (288)
+ +.||++..++.+.
T Consensus 285 ~~~~~F~I~~le~~~ 299 (374)
T 3b5i_A 285 DANGSFAIDKLVVYK 299 (374)
T ss_dssp HHHCSEEEEEEEEEE
T ss_pred HhcCCcEEEEEEEEe
Confidence 8 5999998877654
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9.4e-10 Score=101.06 Aligned_cols=111 Identities=19% Similarity=0.086 Sum_probs=84.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
...+.+++.+...++.+|||+|||+|.++..+++..+ +..+++|+|+++.+++.|
T Consensus 26 ~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~----------------~~~~i~gvDi~~~~~~~a--------- 80 (421)
T 2ih2_A 26 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHG----------------TAYRFVGVEIDPKALDLP--------- 80 (421)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHC----------------SCSEEEEEESCTTTCCCC---------
T ss_pred HHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhC----------------CCCeEEEEECCHHHHHhC---------
Confidence 3445666777655567999999999999999998752 247999999999988765
Q ss_pred CCCceEEEEcccccCCCCCCCeeEEEeccccccccC-----------------------------HHHHHHHHHhhccCC
Q 036563 150 PDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH-----------------------------IEKALAEAYRVLKRG 200 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~-----------------------------~~~~l~~~~~~L~pg 200 (288)
.++.+..+|+.... +.++||+|+++..+..... ...+++.+.++|+||
T Consensus 81 --~~~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~ 157 (421)
T 2ih2_A 81 --PWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPG 157 (421)
T ss_dssp --TTEEEEESCGGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEE
T ss_pred --CCCcEEeCChhhcC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCC
Confidence 26889999988764 3458999999765432211 125688999999999
Q ss_pred cEEEEEec
Q 036563 201 GRFLCLEL 208 (288)
Q Consensus 201 G~l~i~~~ 208 (288)
|.++++..
T Consensus 158 G~~~~i~p 165 (421)
T 2ih2_A 158 GVLVFVVP 165 (421)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEC
Confidence 99987643
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-09 Score=98.21 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=94.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhh-----------hhh-----cc-----cccccCCCceEE
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRR-----------ALQ-----DV-----LEDDLQEETRIY 128 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~-----------~~~-----~~-----~~~~~~~~~~v~ 128 (288)
.....++......++.+|||++||+|.+++.++........+ ..+ .. ..........++
T Consensus 182 ~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 182 TLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 345566677777788899999999999999888764210000 000 00 000011236799
Q ss_pred EEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccc----cCHHHHHHHHHhhccC--CcE
Q 036563 129 VCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV----THIEKALAEAYRVLKR--GGR 202 (288)
Q Consensus 129 ~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~p--gG~ 202 (288)
|+|+++.+++.|++++...++. .++++.++|+.+++.+ ++||+|+++..+..- .+...+.+++.+.|++ |+.
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~-~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~ 339 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVD-EYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWS 339 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCG-GGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCE
T ss_pred EEECCHHHHHHHHHHHHHcCCC-CceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCE
Confidence 9999999999999999888775 5799999999887654 489999998886422 2345566667777776 888
Q ss_pred EEEEec
Q 036563 203 FLCLEL 208 (288)
Q Consensus 203 l~i~~~ 208 (288)
+.++..
T Consensus 340 ~~iit~ 345 (385)
T 3ldu_A 340 YYLITS 345 (385)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 776543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-09 Score=96.59 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=93.8
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhh-----------hh-----hcc-----cccccCCCceEE
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRR-----------AL-----QDV-----LEDDLQEETRIY 128 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~-----------~~-----~~~-----~~~~~~~~~~v~ 128 (288)
.....++......++..|||++||+|.+++.++........+ .. +.. .........+++
T Consensus 188 ~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 188 TMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 344566777777778899999999999998888764210000 00 000 000011235799
Q ss_pred EEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccc----cCHHHHHHHHHhhccC--CcE
Q 036563 129 VCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV----THIEKALAEAYRVLKR--GGR 202 (288)
Q Consensus 129 ~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~p--gG~ 202 (288)
++|+++.|++.|++++...++. .++++.++|+.+++.+ ++||+|+++..+..- .+...+.+.+.+.|++ ||.
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~-~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~ 345 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLG-DLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWS 345 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCT-TCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCE
T ss_pred EEECCHHHHHHHHHHHHHcCCC-CceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCE
Confidence 9999999999999999988876 5799999999988654 489999999775321 1234456666666665 888
Q ss_pred EEEEec
Q 036563 203 FLCLEL 208 (288)
Q Consensus 203 l~i~~~ 208 (288)
++++..
T Consensus 346 ~~iit~ 351 (393)
T 3k0b_A 346 VYVLTS 351 (393)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 877543
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.7e-09 Score=96.09 Aligned_cols=137 Identities=12% Similarity=0.049 Sum_probs=95.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhh-----------hhh-----c-----ccccccCCCceEE
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRR-----------ALQ-----D-----VLEDDLQEETRIY 128 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~-----------~~~-----~-----~~~~~~~~~~~v~ 128 (288)
.....++......++..+||++||+|.+++.++........+ ..+ . ..........+++
T Consensus 181 ~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 181 NMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 444566677777778899999999999998888764210000 000 0 0000011235799
Q ss_pred EEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEecccccc-c---cCHHHHHHHHHhhccC--CcE
Q 036563 129 VCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRN-V---THIEKALAEAYRVLKR--GGR 202 (288)
Q Consensus 129 ~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~-~---~~~~~~l~~~~~~L~p--gG~ 202 (288)
++|+++.|++.|++++...++. ..+++.++|+.+++.+ ++||+|+++..+.. + .+...+.+.+.+.|++ ||.
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~-~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~ 338 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLE-DVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWS 338 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCT-TTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSE
T ss_pred EEECCHHHHHHHHHHHHHcCCC-CceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcE
Confidence 9999999999999999988886 5799999999988654 48999999977542 2 2345566667777776 888
Q ss_pred EEEEec
Q 036563 203 FLCLEL 208 (288)
Q Consensus 203 l~i~~~ 208 (288)
+.++..
T Consensus 339 ~~iit~ 344 (384)
T 3ldg_A 339 QFILTN 344 (384)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 887543
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=7e-09 Score=95.58 Aligned_cols=98 Identities=11% Similarity=0.075 Sum_probs=77.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....++ . +.+..+|+
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~-------------------~~V~gvD~s~~ai~~A~~n~~~ngl--~-v~~~~~d~ 346 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRG-------------------FNVKGFDSNEFAIEMARRNVEINNV--D-AEFEVASD 346 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTT-------------------CEEEEEESCHHHHHHHHHHHHHHTC--C-EEEEECCT
T ss_pred CCCCEEEEeeccchHHHHHHHHcC-------------------CEEEEEECCHHHHHHHHHHHHHcCC--c-EEEEECCh
Confidence 456799999999999999998763 7999999999999999999887765 3 89999999
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.+... .+||+|+++..-... ...+++.+. .|+|+|.+++.
T Consensus 347 ~~~~~--~~fD~Vv~dPPr~g~--~~~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 347 REVSV--KGFDTVIVDPPRAGL--HPRLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp TTCCC--TTCSEEEECCCTTCS--CHHHHHHHH-HHCCSEEEEEE
T ss_pred HHcCc--cCCCEEEEcCCccch--HHHHHHHHH-hcCCCcEEEEE
Confidence 87642 279999997653322 133555554 48999998863
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-09 Score=92.78 Aligned_cols=88 Identities=14% Similarity=0.242 Sum_probs=72.3
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..+.+.+++.+...++.+|||||||+|.++..+++.. .+++++|+++.|++.++++....
T Consensus 15 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-------------------~~V~avEid~~~~~~~~~~~~~~- 74 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-------------------DNLALVEIDRDLVAFLQKKYNQQ- 74 (255)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-------------------SEEEEEECCHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-------------------CEEEEEECCHHHHHHHHHHHhhC-
Confidence 4556778888888888999999999999999998873 79999999999999999987652
Q ss_pred CCCCceEEEEcccccCCCCC----CCeeEEEecccc
Q 036563 149 YPDKSLLWVEGDAEALCFED----STMDGYTIAFGI 180 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~----~~~D~v~~~~~l 180 (288)
++++++.+|+.++++++ ++|| |+++...
T Consensus 75 ---~~v~~i~~D~~~~~~~~~~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 75 ---KNITIYQNDALQFDFSSVKTDKPLR-VVGNLPY 106 (255)
T ss_dssp ---TTEEEEESCTTTCCGGGSCCSSCEE-EEEECCH
T ss_pred ---CCcEEEEcchHhCCHHHhccCCCeE-EEecCCc
Confidence 58999999998876542 4688 6666554
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.7e-09 Score=92.48 Aligned_cols=90 Identities=16% Similarity=0.153 Sum_probs=75.5
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
+..+.+.+++.+...++ +|||||||+|.++..+++.. .+++++|+++.|++.++++...
T Consensus 32 d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-------------------~~V~avEid~~~~~~l~~~~~~- 90 (271)
T 3fut_A 32 SEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-------------------AEVTAIEKDLRLRPVLEETLSG- 90 (271)
T ss_dssp CHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-------------------CCEEEEESCGGGHHHHHHHTTT-
T ss_pred CHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-------------------CEEEEEECCHHHHHHHHHhcCC-
Confidence 45566788888888888 99999999999999999874 7899999999999999988752
Q ss_pred CCCCCceEEEEcccccCCCCCC-CeeEEEecccccc
Q 036563 148 GYPDKSLLWVEGDAEALCFEDS-TMDGYTIAFGIRN 182 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~~~~~-~~D~v~~~~~l~~ 182 (288)
.+++++.+|+.++++++. .+|.|+++...+.
T Consensus 91 ----~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy~i 122 (271)
T 3fut_A 91 ----LPVRLVFQDALLYPWEEVPQGSLLVANLPYHI 122 (271)
T ss_dssp ----SSEEEEESCGGGSCGGGSCTTEEEEEEECSSC
T ss_pred ----CCEEEEECChhhCChhhccCccEEEecCcccc
Confidence 479999999988876542 6899988877544
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.96 E-value=7.3e-11 Score=100.91 Aligned_cols=111 Identities=9% Similarity=0.109 Sum_probs=83.4
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
+.+.+++.+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++....
T Consensus 17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-------------------~~v~~id~~~~~~~~a~~~~~~~--- 74 (245)
T 1yub_A 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-------------------KQVTSIELDSHLFNLSSEKLKLN--- 74 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-------------------SEEEESSSSCSSSSSSSCTTTTC---
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-------------------CeEEEEECCHHHHHHHHHHhccC---
Confidence 34566777777778899999999999999998873 78999999999998887765421
Q ss_pred CCceEEEEcccccCCCCC-CCeeEEEeccccccc-----------cCHHHHH----HHHHhhccCCcEEEE
Q 036563 151 DKSLLWVEGDAEALCFED-STMDGYTIAFGIRNV-----------THIEKAL----AEAYRVLKRGGRFLC 205 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~l~~~-----------~~~~~~l----~~~~~~L~pgG~l~i 205 (288)
++++++.+|+.+++++. ++| .|+++...+.. ......+ +.+.++|+|||.+.+
T Consensus 75 -~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v 143 (245)
T 1yub_A 75 -TRVTLIHQDILQFQFPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL 143 (245)
T ss_dssp -SEEEECCSCCTTTTCCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred -CceEEEECChhhcCcccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence 58999999999887663 578 67776543321 1122233 668999999998765
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.9e-09 Score=99.51 Aligned_cols=136 Identities=14% Similarity=0.038 Sum_probs=93.8
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhh--hhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRA--LQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
...+.|++.+.+.++.+|+|.|||+|.++..+++.+....... +..... .......++|+|+++.++..|+.++...
T Consensus 156 ~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~-~~~~~~~i~GiEid~~~~~lA~~nl~l~ 234 (541)
T 2ar0_A 156 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ-DFQIHRAFIGLELVPGTRRLALMNCLLH 234 (541)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHH-HHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHH-hhhhcceEEEEcCCHHHHHHHHHHHHHh
Confidence 3445677777777788999999999999999888753110000 000000 0000247999999999999999988766
Q ss_pred CCCCC----ceEEEEcccccCC-CCCCCeeEEEeccccccccC--------------HHHHHHHHHhhccCCcEEEEEe
Q 036563 148 GYPDK----SLLWVEGDAEALC-FEDSTMDGYTIAFGIRNVTH--------------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 148 ~~~~~----~v~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~--------------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+.. . ++.+..+|....+ ....+||+|+++..+..... ...++.++.+.|+|||++.++.
T Consensus 235 gi~-~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 235 DIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp TCC-CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCC-ccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 654 2 2778888875432 33467999999987654322 2368999999999999988764
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.92 E-value=5e-09 Score=94.92 Aligned_cols=112 Identities=9% Similarity=0.090 Sum_probs=83.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
...+.+.+.+... +.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++...++
T Consensus 201 ~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~-------------------~~V~gvd~~~~ai~~a~~n~~~ng~ 260 (369)
T 3bt7_A 201 QMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNF-------------------DRVLATEIAKPSVAAAQYNIAANHI 260 (369)
T ss_dssp HHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGS-------------------SEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcC-------------------CEEEEEECCHHHHHHHHHHHHHcCC
Confidence 3344555555543 5689999999999999887753 6899999999999999999988877
Q ss_pred CCCceEEEEcccccCC--CCC--------------CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 150 PDKSLLWVEGDAEALC--FED--------------STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~--~~~--------------~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
.+++++.+|+.+.. +.. .+||+|++...-.. +..++.+.|+++|.++++++.
T Consensus 261 --~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g------~~~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 261 --DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG------LDSETEKMVQAYPRILYISCN 328 (369)
T ss_dssp --CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC------CCHHHHHHHTTSSEEEEEESC
T ss_pred --CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccc------cHHHHHHHHhCCCEEEEEECC
Confidence 38999999987641 111 37999997654322 234566677799999877654
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-08 Score=91.44 Aligned_cols=175 Identities=15% Similarity=0.165 Sum_probs=102.8
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhccccc-------ccCCCceEEEEeCChhHHHHHHHHhh--------hcC
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLED-------DLQEETRIYVCDINPNMLNVGKKRAL--------ERG 148 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~D~s~~~~~~a~~~~~--------~~~ 148 (288)
..+|+|+||++|..+..+....- +.+... .-+|...++..|.-.+.....-+.+. ..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii-------~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g 125 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIV-------QSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENG 125 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHH-------HHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred ceEEEecCCCCCchHHHHHHHHH-------HHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhcc
Confidence 47899999999999988877631 111111 11356789999986333322211111 111
Q ss_pred CCCCceEEEEcccccC---CCCCCCeeEEEeccccccccCHH--------------------------------------
Q 036563 149 YPDKSLLWVEGDAEAL---CFEDSTMDGYTIAFGIRNVTHIE-------------------------------------- 187 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~---~~~~~~~D~v~~~~~l~~~~~~~-------------------------------------- 187 (288)
-. .+..|+.+...++ .++++++|+|+++.++|++.+..
T Consensus 126 ~~-~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~ 204 (384)
T 2efj_A 126 RK-IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDF 204 (384)
T ss_dssp CC-TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHH
T ss_pred CC-CCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHH
Confidence 11 2346666665554 58899999999999999975431
Q ss_pred -HHHHHHHhhccCCcEEEEEeccCCCh--H-----HHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHH
Q 036563 188 -KALAEAYRVLKRGGRFLCLELSHVDI--P-----VFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFA 259 (288)
Q Consensus 188 -~~l~~~~~~L~pgG~l~i~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (288)
.+|+..++.|+|||.+++.-...... . .+.......... | ++.. +.... ......+++.++++
T Consensus 205 ~~FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~e-----G-li~~--ek~ds-f~~P~y~ps~~E~~ 275 (384)
T 2efj_A 205 TTFLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIE-----G-HLEE--EKLDS-FNVPIYAPSTEEVK 275 (384)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHH-----T-SSCH--HHHHT-CCCSBCCCCHHHHH
T ss_pred HHHHHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHh-----C-Ccch--hhhcc-cCCcccCCCHHHHH
Confidence 12667799999999999876666543 2 333332221100 0 0000 00000 00012367999999
Q ss_pred HHHHHcC-CcEEEEEEe
Q 036563 260 AMISDAG-FQKVEYENL 275 (288)
Q Consensus 260 ~~l~~aG-f~~v~~~~~ 275 (288)
.+++++| |++..++.+
T Consensus 276 ~~le~~g~F~i~~le~~ 292 (384)
T 2efj_A 276 RIVEEEGSFEILYLETF 292 (384)
T ss_dssp HHHHHHCSEEEEEEEEE
T ss_pred HHHHHcCCceEEEEEEE
Confidence 9999985 888777654
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=9.3e-09 Score=93.53 Aligned_cols=104 Identities=16% Similarity=0.072 Sum_probs=83.4
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc-eEEEEcc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS-LLWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~-v~~~~~d 160 (288)
.++.+|||++||+|.++..++.... ...+|+++|+++.+++.+++++..+++. ++ ++++.+|
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~----------------ga~~V~avDi~~~av~~~~~N~~~Ngl~-~~~v~v~~~D 113 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETS----------------CVEKAYANDISSKAIEIMKENFKLNNIP-EDRYEIHGME 113 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCS----------------CEEEEEEECSCHHHHHHHHHHHHHTTCC-GGGEEEECSC
T ss_pred CCCCEEEECCCcccHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHhCCC-CceEEEEeCC
Confidence 3567999999999999999998741 1268999999999999999999988875 44 9999999
Q ss_pred cccCC--CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 161 AEALC--FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 161 ~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+..+. ...+.||+|++.. . .....++..+.+.|++||.+++.
T Consensus 114 a~~~l~~~~~~~fD~V~lDP-~---g~~~~~l~~a~~~Lk~gGll~~t 157 (392)
T 3axs_A 114 ANFFLRKEWGFGFDYVDLDP-F---GTPVPFIESVALSMKRGGILSLT 157 (392)
T ss_dssp HHHHHHSCCSSCEEEEEECC-S---SCCHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhCCCCcEEEECC-C---cCHHHHHHHHHHHhCCCCEEEEE
Confidence 86542 2245799999876 1 22356889999999999977754
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=7.2e-09 Score=91.15 Aligned_cols=87 Identities=18% Similarity=0.256 Sum_probs=71.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+++.+...++.+|||+|||+|..+..+++.. +..+++++|+++.|++.+++++...+ .
T Consensus 16 ~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~-----------------~~~~VigvD~d~~al~~A~~~~~~~g---~ 75 (301)
T 1m6y_A 16 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHC-----------------PGCRIIGIDVDSEVLRIAEEKLKEFS---D 75 (301)
T ss_dssp HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHC-----------------TTCEEEEEESCHHHHHHHHHHTGGGT---T
T ss_pred HHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHhcC---C
Confidence 456677777788899999999999999999986 35899999999999999999987765 4
Q ss_pred ceEEEEcccccCC--CC---CCCeeEEEeccc
Q 036563 153 SLLWVEGDAEALC--FE---DSTMDGYTIAFG 179 (288)
Q Consensus 153 ~v~~~~~d~~~~~--~~---~~~~D~v~~~~~ 179 (288)
++.++++|+..++ +. ..+||.|++...
T Consensus 76 ~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~D~g 107 (301)
T 1m6y_A 76 RVSLFKVSYREADFLLKTLGIEKVDGILMDLG 107 (301)
T ss_dssp TEEEEECCGGGHHHHHHHTTCSCEEEEEEECS
T ss_pred cEEEEECCHHHHHHHHHhcCCCCCCEEEEcCc
Confidence 8999999988764 11 157999998664
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.84 E-value=2e-08 Score=95.28 Aligned_cols=135 Identities=14% Similarity=0.065 Sum_probs=91.4
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+...+.|++.+.+.++ +|+|.+||+|.+...+++.+.......- ...........++|+|+++.++..|+.++...+
T Consensus 231 ~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~--~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g 307 (544)
T 3khk_A 231 KSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKH--YNASEQKKQISVYGQESNPTTWKLAAMNMVIRG 307 (544)
T ss_dssp HHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHT--SCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccc--cchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC
Confidence 3455677777776655 9999999999999888766421110000 000000013689999999999999999988777
Q ss_pred CCCCceEEEEcccccCC-CCCCCeeEEEeccccccc-------------------------c----CHHHHHHHHHhhcc
Q 036563 149 YPDKSLLWVEGDAEALC-FEDSTMDGYTIAFGIRNV-------------------------T----HIEKALAEAYRVLK 198 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~-------------------------~----~~~~~l~~~~~~L~ 198 (288)
+. .++.+.++|....+ +...+||+|+++..+..- + ....++.++.+.|+
T Consensus 308 i~-~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk 386 (544)
T 3khk_A 308 ID-FNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLA 386 (544)
T ss_dssp CC-CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEE
T ss_pred CC-cccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhc
Confidence 65 44444777765433 445789999998876531 1 01258999999999
Q ss_pred CCcEEEEEe
Q 036563 199 RGGRFLCLE 207 (288)
Q Consensus 199 pgG~l~i~~ 207 (288)
|||++.++-
T Consensus 387 ~gGr~aiVl 395 (544)
T 3khk_A 387 PTGSMALLL 395 (544)
T ss_dssp EEEEEEEEE
T ss_pred cCceEEEEe
Confidence 999988653
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=9.8e-09 Score=93.16 Aligned_cols=101 Identities=18% Similarity=0.151 Sum_probs=81.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc---------------
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--------------- 147 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--------------- 147 (288)
++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++++...
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~-----------------~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~ 109 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALET-----------------PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILK 109 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS-----------------SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEE
T ss_pred CCCEEEECCCchhHHHHHHHHhC-----------------CCCeEEEEECCHHHHHHHHHHHHHhccccccccccccccc
Confidence 46799999999999999999986 2468999999999999999999877
Q ss_pred CCCCCceEEEEcccccCC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 148 GYPDKSLLWVEGDAEALC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 148 ~~~~~~v~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++. ++++..+|+..+. ...+.||+|++.. . -....++..+.+.|++||.+++.
T Consensus 110 gl~--~i~v~~~Da~~~~~~~~~~fD~I~lDP-~---~~~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 110 GEK--TIVINHDDANRLMAERHRYFHFIDLDP-F---GSPMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp SSS--EEEEEESCHHHHHHHSTTCEEEEEECC-S---SCCHHHHHHHHHHEEEEEEEEEE
T ss_pred CCC--ceEEEcCcHHHHHHhccCCCCEEEeCC-C---CCHHHHHHHHHHhcCCCCEEEEE
Confidence 653 4999999987652 1135799999654 2 12467889999999999987754
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-07 Score=92.77 Aligned_cols=133 Identities=11% Similarity=0.049 Sum_probs=91.4
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhccccc-----------------------------
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLED----------------------------- 119 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~----------------------------- 119 (288)
+.....++......++..|||++||+|.+++.++........ |..+.
T Consensus 176 e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~ap----G~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~ 251 (703)
T 3v97_A 176 ETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAP----GLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKG 251 (703)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCT----TTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCC----CCCccccchhhcccCCHHHHHHHHHHHHHHhhhc
Confidence 344566777777777889999999999999888776310000 00000
Q ss_pred ccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCC--CCCeeEEEeccccccc----cCHHHHH---
Q 036563 120 DLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFE--DSTMDGYTIAFGIRNV----THIEKAL--- 190 (288)
Q Consensus 120 ~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~v~~~~~l~~~----~~~~~~l--- 190 (288)
...+...++|+|+++.+++.|++++...++. ..+.+.++|+.++..+ .++||+|+++..+..- .+...+.
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~agv~-~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l 330 (703)
T 3v97_A 252 LAEYSSHFYGSDSDARVIQRARTNARLAGIG-ELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLL 330 (703)
T ss_dssp HHHCCCCEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHH
T ss_pred cccCCccEEEEECCHHHHHHHHHHHHHcCCC-CceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHH
Confidence 0012368999999999999999999998886 5699999999887433 3379999999775321 1233344
Q ss_pred HHHHhhccCCcEEEEE
Q 036563 191 AEAYRVLKRGGRFLCL 206 (288)
Q Consensus 191 ~~~~~~L~pgG~l~i~ 206 (288)
.++.+.+.|||.+.++
T Consensus 331 ~~~lk~~~~g~~~~il 346 (703)
T 3v97_A 331 GRIMKNQFGGWNLSLF 346 (703)
T ss_dssp HHHHHHHCTTCEEEEE
T ss_pred HHHHHhhCCCCeEEEE
Confidence 4444555589998875
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.6e-08 Score=93.69 Aligned_cols=105 Identities=14% Similarity=0.112 Sum_probs=77.9
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
...|||+|||+|.+....++.... +. ...+|+++|.|+ +...+++....+++. ++|+++.+|+++
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~-~~------------~~vkVyAVEknp-~A~~a~~~v~~N~~~-dkVtVI~gd~ee 422 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQ-AD------------RRIKLYAVEKNP-NAVVTLENWQFEEWG-SQVTVVSSDMRE 422 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHH-TT------------CEEEEEEEESCH-HHHHHHHHHHHHTTG-GGEEEEESCTTT
T ss_pred CcEEEEECCCCcHHHHHHHHHHHh-cC------------CCcEEEEEECCH-HHHHHHHHHHhccCC-CeEEEEeCccee
Confidence 457999999999996666665421 00 123789999987 566788888888887 889999999999
Q ss_pred CCCCCCCeeEEEeccc--cccccCHHHHHHHHHhhccCCcEEE
Q 036563 164 LCFEDSTMDGYTIAFG--IRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~--l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
+..| +++|+|++=.. +-.-+.....|....+.|||||.++
T Consensus 423 v~LP-EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 423 WVAP-EKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCCS-SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred ccCC-cccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 8766 58999997322 1111234567888899999999876
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-08 Score=87.37 Aligned_cols=90 Identities=13% Similarity=0.187 Sum_probs=69.7
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCC-CceEEEEeCChhHHHHHHHHhhh
Q 036563 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQE-ETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
+..+.+.+++.+...++.+|||||||+|.++..+++... . ..+++++|+++.|++.++++.
T Consensus 27 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~----------------~~~~~V~avDid~~~l~~a~~~~-- 88 (279)
T 3uzu_A 27 DHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLA----------------TPGSPLHAVELDRDLIGRLEQRF-- 88 (279)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHC----------------BTTBCEEEEECCHHHHHHHHHHH--
T ss_pred CHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCC----------------CcCCeEEEEECCHHHHHHHHHhc--
Confidence 345567788888888889999999999999999998862 1 134999999999999999883
Q ss_pred cCCCCCceEEEEcccccCCCCCC------CeeEEEeccc
Q 036563 147 RGYPDKSLLWVEGDAEALCFEDS------TMDGYTIAFG 179 (288)
Q Consensus 147 ~~~~~~~v~~~~~d~~~~~~~~~------~~D~v~~~~~ 179 (288)
. .+++++.+|+.++++++- ..+.|++|..
T Consensus 89 ~----~~v~~i~~D~~~~~~~~~~~~~~~~~~~vv~NlP 123 (279)
T 3uzu_A 89 G----ELLELHAGDALTFDFGSIARPGDEPSLRIIGNLP 123 (279)
T ss_dssp G----GGEEEEESCGGGCCGGGGSCSSSSCCEEEEEECC
T ss_pred C----CCcEEEECChhcCChhHhcccccCCceEEEEccC
Confidence 2 589999999998865431 2345666554
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.79 E-value=4.3e-08 Score=87.93 Aligned_cols=178 Identities=15% Similarity=0.143 Sum_probs=108.5
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccc-----cc-cCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLE-----DD-LQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~-----~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
...+|+|+||++|..+..+....= +.+.. +. .+|...++..|.-.++.....+.+.... ...+..|
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii-------~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-~~~~~~f 122 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELI-------KTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-DVDGVCF 122 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTH-------HHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-SCTTCEE
T ss_pred CceEEEecCCCCCcchHHHHHHHH-------HHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-ccCCCEE
Confidence 346899999999987766655420 00100 11 2467889999999999988887765421 1013455
Q ss_pred EEccccc---CCCCCCCeeEEEeccccccccCH---------------------------------HHHHHHHHhhccCC
Q 036563 157 VEGDAEA---LCFEDSTMDGYTIAFGIRNVTHI---------------------------------EKALAEAYRVLKRG 200 (288)
Q Consensus 157 ~~~d~~~---~~~~~~~~D~v~~~~~l~~~~~~---------------------------------~~~l~~~~~~L~pg 200 (288)
..+...+ -.++++++|+|+++.++|++.+. ..+|+..++.|+||
T Consensus 123 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pG 202 (359)
T 1m6e_X 123 INGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPG 202 (359)
T ss_dssp EEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTT
T ss_pred EEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5555444 36889999999999999987542 23488999999999
Q ss_pred cEEEEEeccCCChH--------HHHHHHHHhhccccccccccccC-CCcchhhhHHHHhcCCChHHHHHHHHHcCC-cEE
Q 036563 201 GRFLCLELSHVDIP--------VFKELYDYYSFSVIPAIGELVAG-DRGSYQYLVESVRRFPPQEKFAAMISDAGF-QKV 270 (288)
Q Consensus 201 G~l~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-~~v 270 (288)
|.+++.-....+.. .+..+...+..-+. -| ++.. .-+.+ .....+++.++++.+++++|. ++.
T Consensus 203 G~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~--eG-li~~ek~d~f----~~P~y~ps~~E~~~~ie~~G~F~i~ 275 (359)
T 1m6e_X 203 GRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVS--EG-LIEEEKMDKF----NIPQYTPSPTEVEAEILKEGSFLID 275 (359)
T ss_dssp CEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHH--TT-CSCCSTTGGG----CCCCBCCCSHHHHHHHHHTTTBCCE
T ss_pred ceEEEEEecCCCCCccccchHHHHHHHHHHHHHHHH--cc-ccchhhhhcc----CCCccCCCHHHHHHHHHHcCCceEE
Confidence 99998766554321 12222222210000 01 1000 00000 011236789999999999954 776
Q ss_pred EEEEe
Q 036563 271 EYENL 275 (288)
Q Consensus 271 ~~~~~ 275 (288)
..+.+
T Consensus 276 ~~e~~ 280 (359)
T 1m6e_X 276 HIEAS 280 (359)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66543
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.75 E-value=7e-08 Score=91.43 Aligned_cols=124 Identities=14% Similarity=0.108 Sum_probs=91.3
Q ss_pred HHHHHHHhhcC----CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh
Q 036563 70 LWKDRLVSKLN----PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL 145 (288)
Q Consensus 70 ~~~~~~~~~l~----~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 145 (288)
...+.|++.+. +.++.+|+|.+||+|.+...+++.+.. .....++|+|+++.+...|+.++.
T Consensus 204 ~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~--------------~~~~~i~G~Eid~~~~~lA~~Nl~ 269 (542)
T 3lkd_A 204 PVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQ--------------PQTVVYFGQELNTSTYNLARMNMI 269 (542)
T ss_dssp HHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSC--------------TTTCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHh--------------ccCceEEEEECcHHHHHHHHHHHH
Confidence 34455666554 456789999999999999888887520 024789999999999999999887
Q ss_pred hcCCCCCceEEEEcccccC--C-CCCCCeeEEEecccccccc--------C---------------HHHHHHHHHhhcc-
Q 036563 146 ERGYPDKSLLWVEGDAEAL--C-FEDSTMDGYTIAFGIRNVT--------H---------------IEKALAEAYRVLK- 198 (288)
Q Consensus 146 ~~~~~~~~v~~~~~d~~~~--~-~~~~~~D~v~~~~~l~~~~--------~---------------~~~~l~~~~~~L~- 198 (288)
-.+....++.+..+|.... + ....+||+|+++..+..-. + -..++.++.+.|+
T Consensus 270 l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~ 349 (542)
T 3lkd_A 270 LHGVPIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQ 349 (542)
T ss_dssp HTTCCGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCT
T ss_pred HcCCCcCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCC
Confidence 7766423678899997655 2 3456899999986643110 0 1247999999999
Q ss_pred CCcEEEEEe
Q 036563 199 RGGRFLCLE 207 (288)
Q Consensus 199 pgG~l~i~~ 207 (288)
|||++.++-
T Consensus 350 ~gGr~a~Vl 358 (542)
T 3lkd_A 350 DNGVMAIVL 358 (542)
T ss_dssp TTCEEEEEE
T ss_pred CceeEEEEe
Confidence 999988654
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.9e-08 Score=83.56 Aligned_cols=88 Identities=19% Similarity=0.197 Sum_probs=68.3
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..+.+.+++.+...++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++ . .
T Consensus 17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~------------------~~~v~avEid~~~~~~~~~~-~-~- 75 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHP------------------LKKLYVIELDREMVENLKSI-G-D- 75 (249)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSC------------------CSEEEEECCCHHHHHHHTTS-C-C-
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcC------------------CCeEEEEECCHHHHHHHHhc-c-C-
Confidence 4566778888888888899999999999999998862 37999999999999999876 2 1
Q ss_pred CCCCceEEEEcccccCCCCCCC-eeEEEecccc
Q 036563 149 YPDKSLLWVEGDAEALCFEDST-MDGYTIAFGI 180 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~-~D~v~~~~~l 180 (288)
.+++++.+|+.++++++.. ...|+++...
T Consensus 76 ---~~v~~i~~D~~~~~~~~~~~~~~vv~NlPy 105 (249)
T 3ftd_A 76 ---ERLEVINEDASKFPFCSLGKELKVVGNLPY 105 (249)
T ss_dssp ---TTEEEECSCTTTCCGGGSCSSEEEEEECCT
T ss_pred ---CCeEEEEcchhhCChhHccCCcEEEEECch
Confidence 5899999999888765421 2255555543
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.75 E-value=8.1e-08 Score=82.52 Aligned_cols=114 Identities=12% Similarity=0.120 Sum_probs=71.9
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCC-----CceEEEEeCCh---hHHH-----------HHHH
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQE-----ETRIYVCDINP---NMLN-----------VGKK 142 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~D~s~---~~~~-----------~a~~ 142 (288)
.+..+|||+|+|+|..+..+++..... .... | ..+++++|..+ +++. .+++
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~---------~~~~-p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~ 128 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQF---------REAH-PQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQ 128 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHH---------HHHC-TTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhh---------hhhC-CCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHH
Confidence 345699999999999988877653000 0000 2 25899999876 4433 4444
Q ss_pred HhhhcC----------CC--CCceEEEEccccc-CCCCC----CCeeEEEecc-ccccccC--HHHHHHHHHhhccCCcE
Q 036563 143 RALERG----------YP--DKSLLWVEGDAEA-LCFED----STMDGYTIAF-GIRNVTH--IEKALAEAYRVLKRGGR 202 (288)
Q Consensus 143 ~~~~~~----------~~--~~~v~~~~~d~~~-~~~~~----~~~D~v~~~~-~l~~~~~--~~~~l~~~~~~L~pgG~ 202 (288)
.+..+. +. ..++++..+|+.+ ++... ..||+|+... .-...++ ...+++.+.++|+|||.
T Consensus 129 l~~~w~~~~~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~ 208 (257)
T 2qy6_A 129 LQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGT 208 (257)
T ss_dssp HHHTCCCSCSEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEE
T ss_pred HHHhccccccchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcE
Confidence 443311 11 1356788899876 33222 2799999853 2222223 26789999999999999
Q ss_pred EEE
Q 036563 203 FLC 205 (288)
Q Consensus 203 l~i 205 (288)
|+.
T Consensus 209 l~t 211 (257)
T 2qy6_A 209 LAT 211 (257)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.4e-09 Score=90.61 Aligned_cols=86 Identities=10% Similarity=0.026 Sum_probs=66.0
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCCh-------hHHHHHHHHhhhcCC
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINP-------NMLNVGKKRALERGY 149 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~-------~~~~~a~~~~~~~~~ 149 (288)
..+...++.+|||+|||+|..+..++... .+|+++|+++ .+++.++++....++
T Consensus 77 ~a~~~~~~~~VLDlgcG~G~~a~~lA~~g-------------------~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~ 137 (258)
T 2r6z_A 77 KAVNHTAHPTVWDATAGLGRDSFVLASLG-------------------LTVTAFEQHPAVACLLSDGIRRALLNPETQDT 137 (258)
T ss_dssp HHTTGGGCCCEEETTCTTCHHHHHHHHTT-------------------CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHhCcCCcCeEEEeeCccCHHHHHHHHhC-------------------CEEEEEECChhhhHHHHHHHHHHHhHHHhhCC
Confidence 33344456799999999999999998863 7899999999 999999887665544
Q ss_pred CCCceEEEEcccccC-C-CCC--CCeeEEEecccccc
Q 036563 150 PDKSLLWVEGDAEAL-C-FED--STMDGYTIAFGIRN 182 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~-~-~~~--~~~D~v~~~~~l~~ 182 (288)
. ++++++.+|+.+. + +++ ++||+|+++..+.+
T Consensus 138 ~-~ri~~~~~d~~~~l~~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 138 A-ARINLHFGNAAEQMPALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp H-TTEEEEESCHHHHHHHHHHHHCCCSEEEECCCC--
T ss_pred c-cCeEEEECCHHHHHHhhhccCCCccEEEECCCCCC
Confidence 3 4599999998774 2 333 68999999877654
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.7e-08 Score=86.61 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=66.9
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..+.+.+++.+...++.+|||||||+|.++. + ... ...+++++|+++.|++.++++....
T Consensus 7 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l-~~~-----------------~~~~v~avEid~~~~~~a~~~~~~~- 66 (252)
T 1qyr_A 7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTE-P-VGE-----------------RLDQLTVIELDRDLAARLQTHPFLG- 66 (252)
T ss_dssp HHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-H-HHT-----------------TCSCEEEECCCHHHHHHHHTCTTTG-
T ss_pred HHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-h-hhC-----------------CCCeEEEEECCHHHHHHHHHHhccC-
Confidence 3455677788877788899999999999999 5 332 1223999999999999998876543
Q ss_pred CCCCceEEEEcccccCCCCC-----CCeeEEEecccc
Q 036563 149 YPDKSLLWVEGDAEALCFED-----STMDGYTIAFGI 180 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~-----~~~D~v~~~~~l 180 (288)
++++++.+|+..+++++ +..|.|+++...
T Consensus 67 ---~~v~~i~~D~~~~~~~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 67 ---PKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp ---GGEEEECSCGGGCCHHHHHHHHTSCEEEEEECCT
T ss_pred ---CceEEEECchhhCCHHHhhcccCCceEEEECCCC
Confidence 48999999998876432 234677776654
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.7e-07 Score=79.52 Aligned_cols=109 Identities=16% Similarity=0.158 Sum_probs=84.9
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc---CCCCCceEEEE
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER---GYPDKSLLWVE 158 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~---~~~~~~v~~~~ 158 (288)
+.+.+||=||.|.|..+..+++.. +..+++.+|+++.+++.+++.+... .+.+++++++.
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~-----------------~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~ 144 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHK-----------------NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVI 144 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCT-----------------TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcC-----------------CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEe
Confidence 345799999999999999999875 3579999999999999999987542 23358999999
Q ss_pred cccccC-CCCCCCeeEEEecccccccc----CHHHHHHHHHhhccCCcEEEEEe
Q 036563 159 GDAEAL-CFEDSTMDGYTIAFGIRNVT----HIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 159 ~d~~~~-~~~~~~~D~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+|+... ....++||+|+....-..-+ -...+++.+++.|+|||.+++..
T Consensus 145 ~Dg~~~l~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 145 DDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp SCTTTTTSCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred chHHHHHhhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 998775 34456899999865411111 12568999999999999999743
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.61 E-value=7e-07 Score=73.64 Aligned_cols=96 Identities=8% Similarity=-0.099 Sum_probs=73.7
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC--CCCceEEEEccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY--PDKSLLWVEGDA 161 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~v~~~~~d~ 161 (288)
..+|||+||| ..+..+++. ++++++.+|.+++..+.+++.+...++ . .++++..+|+
T Consensus 31 a~~VLEiGtG--ySTl~lA~~------------------~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~-~~I~~~~gda 89 (202)
T 3cvo_A 31 AEVILEYGSG--GSTVVAAEL------------------PGKHVTSVESDRAWARMMKAWLAANPPAEG-TEVNIVWTDI 89 (202)
T ss_dssp CSEEEEESCS--HHHHHHHTS------------------TTCEEEEEESCHHHHHHHHHHHHHSCCCTT-CEEEEEECCC
T ss_pred CCEEEEECch--HHHHHHHHc------------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-CceEEEEeCc
Confidence 5699999984 566666653 248999999999999999999998876 4 6899999996
Q ss_pred ccC---------------C--------C-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 162 EAL---------------C--------F-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 162 ~~~---------------~--------~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
... + . ..++||+|++..-. ....+..+.+.|+|||.+++
T Consensus 90 ~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k-----~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 90 GPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF-----RVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp SSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS-----HHHHHHHHHHHCSSCEEEEE
T ss_pred hhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC-----chhHHHHHHHhcCCCeEEEE
Confidence 432 1 1 13679999987642 23566667899999999975
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=6.9e-08 Score=82.69 Aligned_cols=113 Identities=11% Similarity=0.058 Sum_probs=74.2
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+.+.....++.+|||+|||+|.++..+++..+ ...+.++|+...+....... ...+ .++
T Consensus 66 i~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~-----------------~~~v~g~dVGvDl~~~pi~~-~~~g---~~i 124 (277)
T 3evf_A 66 FHERGYVKLEGRVIDLGCGRGGWCYYAAAQKE-----------------VSGVKGFTLGRDGHEKPMNV-QSLG---WNI 124 (277)
T ss_dssp HHHTTSSCCCEEEEEETCTTCHHHHHHHTSTT-----------------EEEEEEECCCCTTCCCCCCC-CBTT---GGG
T ss_pred HHHhCCCCCCCEEEEecCCCCHHHHHHHHhcC-----------------CCcceeEEEeccCccccccc-CcCC---CCe
Confidence 33444456778999999999999998887642 36788888875431000000 0001 145
Q ss_pred EEEEcccccCCCCCCCeeEEEeccccccccC----H---HHHHHHHHhhccCC-cEEEEEecc
Q 036563 155 LWVEGDAEALCFEDSTMDGYTIAFGIRNVTH----I---EKALAEAYRVLKRG-GRFLCLELS 209 (288)
Q Consensus 155 ~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~----~---~~~l~~~~~~L~pg-G~l~i~~~~ 209 (288)
..+..+++...++.+++|+|++..+.+ ... . ..+|+.+.++|+|| |.|++--+.
T Consensus 125 i~~~~~~dv~~l~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 125 ITFKDKTDIHRLEPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp EEEECSCCTTTSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred EEEeccceehhcCCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 556666655566778899999988765 221 1 12468889999999 999985555
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.2e-07 Score=89.18 Aligned_cols=114 Identities=16% Similarity=0.145 Sum_probs=74.9
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+..|||+|||+|.++...+......+.. -+-+......+|+++|.++.+....+... ..++. ++|.++.+|+++
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~----~~~~~~~~~~kVyAVEknp~A~~~l~~~~-~Ng~~-d~VtVI~gd~ee 483 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNT----FRQGQESLKVKLYIVEKNPNAIVTLKYMN-VRTWK-RRVTIIESDMRS 483 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHH----HSTTSCCCEEEEEEEECCHHHHHHHHHHH-HHTTT-TCSEEEESCGGG
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCcc----ccccccccccEEEEEeCChHHHHHHHHHH-hcCCC-CeEEEEeCchhh
Confidence 4579999999999976544432100000 00000001249999999997775555444 36666 679999999998
Q ss_pred CCCC-----CCCeeEEEecccccccc---CHHHHHHHHHhhccCCcEEE
Q 036563 164 LCFE-----DSTMDGYTIAFGIRNVT---HIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 164 ~~~~-----~~~~D~v~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~ 204 (288)
+..+ .+++|+|++=.. ..+- -....|..+.+.|+|||.++
T Consensus 484 v~lp~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 484 LPGIAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cccccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence 8653 568999997443 2221 23467888889999999876
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5.5e-07 Score=80.87 Aligned_cols=122 Identities=18% Similarity=0.111 Sum_probs=92.5
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC--
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP-- 150 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-- 150 (288)
......+.++++.+|||++||+|.-+.++++.. +...++++|+++..+...++++...+..
T Consensus 138 ~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~-----------------~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~ 200 (359)
T 4fzv_A 138 LLPVLALGLQPGDIVLDLCAAPGGKTLALLQTG-----------------CCRNLAANDLSPSRIARLQKILHSYVPEEI 200 (359)
T ss_dssp HHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTT-----------------CEEEEEEECSCHHHHHHHHHHHHHHSCTTT
T ss_pred HHHHHHhCCCCCCEEEEecCCccHHHHHHHHhc-----------------CCCcEEEEcCCHHHHHHHHHHHHHhhhhhh
Confidence 344567788899999999999999999998875 3578999999999999998888766542
Q ss_pred --CCceEEEEcccccCC-CCCCCeeEEEecccccc--------ccC----------------HHHHHHHHHhhccCCcEE
Q 036563 151 --DKSLLWVEGDAEALC-FEDSTMDGYTIAFGIRN--------VTH----------------IEKALAEAYRVLKRGGRF 203 (288)
Q Consensus 151 --~~~v~~~~~d~~~~~-~~~~~~D~v~~~~~l~~--------~~~----------------~~~~l~~~~~~L~pgG~l 203 (288)
..++.+...|...++ ...+.||.|++...... -++ -.++|.+..+.|||||.+
T Consensus 201 ~~~~~v~v~~~D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~L 280 (359)
T 4fzv_A 201 RDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHV 280 (359)
T ss_dssp TTSSSEEEECCCGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEE
T ss_pred ccCCceEEEeCchhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 146888888887753 34568999997543221 111 035788999999999999
Q ss_pred EEEeccCC
Q 036563 204 LCLELSHV 211 (288)
Q Consensus 204 ~i~~~~~~ 211 (288)
+...++..
T Consensus 281 VYsTCSl~ 288 (359)
T 4fzv_A 281 VYSTCSLS 288 (359)
T ss_dssp EEEESCCC
T ss_pred EEEeCCCc
Confidence 98777654
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.54 E-value=9.2e-08 Score=82.17 Aligned_cols=108 Identities=11% Similarity=0.065 Sum_probs=72.6
Q ss_pred HHHHhhcCCCCC--CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc---
Q 036563 73 DRLVSKLNPFPG--MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--- 147 (288)
Q Consensus 73 ~~~~~~l~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--- 147 (288)
+.+.+.+...++ .+|||++||+|..+..++... ++|+++|+++.+...++..+...
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g-------------------~~V~~vE~~~~~~~l~~~~l~~a~~~ 136 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG-------------------CRVRMLERNPVVAALLDDGLARGYAD 136 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHT-------------------CCEEEEECCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcC-------------------CEEEEEECCHHHHHHHHHHHHHHHhh
Confidence 345556655566 799999999999999999873 68999999998766665554321
Q ss_pred ----C-CCCCceEEEEcccccC-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCc
Q 036563 148 ----G-YPDKSLLWVEGDAEAL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGG 201 (288)
Q Consensus 148 ----~-~~~~~v~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG 201 (288)
+ +. .+++++.+|+.+. +...+.||+|++...+.+-. ...++++..+.|++.+
T Consensus 137 ~~~~~~l~-~~i~~~~~D~~~~L~~~~~~fDvV~lDP~y~~~~-~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 137 AEIGGWLQ-ERLQLIHASSLTALTDITPRPQVVYLDPMFPHKQ-KSALVKKEMRVFQSLV 194 (258)
T ss_dssp TTTHHHHH-HHEEEEESCHHHHSTTCSSCCSEEEECCCCCCCC-C-----HHHHHHHHHS
T ss_pred Hhhhhhhh-cCEEEEECCHHHHHHhCcccCCEEEEcCCCCCcc-cchHHHHHHHHHHHhh
Confidence 1 11 3689999998763 32223699999998876532 2345555666666544
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.51 E-value=9.4e-08 Score=87.23 Aligned_cols=77 Identities=14% Similarity=0.095 Sum_probs=64.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEcc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~d 160 (288)
++.+|||+|||+|..+..++... .+|+++|+++.+++.+++++... ++ .+++++++|
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g-------------------~~V~~VD~s~~~l~~Ar~N~~~~~~gl--~~i~~i~~D 151 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA-------------------SQGIYIERNDETAVAARHNIPLLLNEG--KDVNILTGD 151 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC-------------------SEEEEEESCHHHHHHHHHHHHHHSCTT--CEEEEEESC
T ss_pred CCCEEEEeCCCchHHHHHHHhcC-------------------CEEEEEECCHHHHHHHHHhHHHhccCC--CcEEEEECc
Confidence 37899999999999998887763 79999999999999999999876 65 489999999
Q ss_pred cccC-CC-CCCCeeEEEecccc
Q 036563 161 AEAL-CF-EDSTMDGYTIAFGI 180 (288)
Q Consensus 161 ~~~~-~~-~~~~~D~v~~~~~l 180 (288)
+.+. +. ++.+||+|+++...
T Consensus 152 a~~~L~~~~~~~fDvV~lDPPr 173 (410)
T 3ll7_A 152 FKEYLPLIKTFHPDYIYVDPAR 173 (410)
T ss_dssp GGGSHHHHHHHCCSEEEECCEE
T ss_pred HHHhhhhccCCCceEEEECCCC
Confidence 8874 22 23579999997553
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.43 E-value=6.3e-06 Score=77.92 Aligned_cols=161 Identities=14% Similarity=0.077 Sum_probs=102.9
Q ss_pred hHHHHHHHhHhhHHHhhhhhhh-hhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccc
Q 036563 42 SQLVSNVFSSVAKNYDLMNDLM-SGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120 (288)
Q Consensus 42 ~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~ 120 (288)
...+.++|+..-..+....... -.-..+.+.+.|++.+.+.++.+|+|.+||+|.+...+.+.+........ ...
T Consensus 175 ~d~lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~----~~~ 250 (530)
T 3ufb_A 175 MHTLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVE----DRE 250 (530)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHH----HHH
T ss_pred hHHHHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchh----HHH
Confidence 3556677776666554221100 01112456678888888888889999999999999888876531110000 000
Q ss_pred cCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC----CCCCCeeEEEeccccccccC-----------
Q 036563 121 LQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC----FEDSTMDGYTIAFGIRNVTH----------- 185 (288)
Q Consensus 121 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~v~~~~~l~~~~~----------- 185 (288)
......++|+|+++.+...|+.++.-.+.. ...+..+|....+ ....+||+|+++..+.....
T Consensus 251 ~~~~~~i~G~E~~~~~~~la~mNl~lhg~~--~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~ 328 (530)
T 3ufb_A 251 VLQESSIFGGEAKSLPYLLVQMNLLLHGLE--YPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDM 328 (530)
T ss_dssp HHHTCCEEEECCSHHHHHHHHHHHHHHTCS--CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGG
T ss_pred HHhhhhhhhhhccHHHHHHHHHHHHhcCCc--cccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhc
Confidence 001256999999999999999887777664 3456667754433 12347999999988742211
Q ss_pred -----HHHHHHHHHhhcc-------CCcEEEEEec
Q 036563 186 -----IEKALAEAYRVLK-------RGGRFLCLEL 208 (288)
Q Consensus 186 -----~~~~l~~~~~~L~-------pgG~l~i~~~ 208 (288)
-..++..+.+.|+ |||++.++-.
T Consensus 329 ~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 329 QTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp CCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred ccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 1346788888886 6999887543
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.9e-07 Score=78.21 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=73.6
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+.+.....++.+|||+|||+|.++..+++..+ ...+.++|++..+...+... ...+ .++
T Consensus 82 i~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~g-----------------v~sV~GvdvG~d~~~~pi~~-~~~g---~~i 140 (282)
T 3gcz_A 82 MEERGYVKPTGIVVDLGCGRGGWSYYAASLKN-----------------VKKVMAFTLGVQGHEKPIMR-TTLG---WNL 140 (282)
T ss_dssp HHHTTSCCCCEEEEEETCTTCHHHHHHHTSTT-----------------EEEEEEECCCCTTSCCCCCC-CBTT---GGG
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcC-----------------CCeeeeEEeccCcccccccc-ccCC---Cce
Confidence 44444567788999999999999999887652 46788999976542211100 0001 233
Q ss_pred EEEEcccccCCCCCCCeeEEEeccccccccC-----H--HHHHHHHHhhccCC--cEEEEEecc
Q 036563 155 LWVEGDAEALCFEDSTMDGYTIAFGIRNVTH-----I--EKALAEAYRVLKRG--GRFLCLELS 209 (288)
Q Consensus 155 ~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~-----~--~~~l~~~~~~L~pg--G~l~i~~~~ 209 (288)
..+..++....++..++|+|+|..+.. ... . ..+|.-+.++|+|| |.|++--+.
T Consensus 141 i~~~~~~dv~~l~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 141 IRFKDKTDVFNMEVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp EEEECSCCGGGSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred EEeeCCcchhhcCCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 444433333345567899999988866 321 1 13577778999999 999986666
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.6e-06 Score=81.35 Aligned_cols=112 Identities=14% Similarity=0.059 Sum_probs=75.8
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHH--HHHhhhcCCC--CCceEEE
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVG--KKRALERGYP--DKSLLWV 157 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a--~~~~~~~~~~--~~~v~~~ 157 (288)
.++.+|||.|||+|.++..+++..+. .....++|+|+++.++..| +..+....+. .....+.
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~e--------------i~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~ 385 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNN--------------VMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTIT 385 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTT--------------CCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEE
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcc--------------cCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEE
Confidence 35779999999999999999887520 0126799999999999999 4443321111 0123455
Q ss_pred EcccccC-CCCCCCeeEEEecccccc-cc---------------------------C-HHHHHHHHHhhccCCcEEEEEe
Q 036563 158 EGDAEAL-CFEDSTMDGYTIAFGIRN-VT---------------------------H-IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 158 ~~d~~~~-~~~~~~~D~v~~~~~l~~-~~---------------------------~-~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
..|+... .....+||+|+++..+.. .. + ...++..+.+.|+|||++.++-
T Consensus 386 ~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIl 465 (878)
T 3s1s_A 386 GEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIM 465 (878)
T ss_dssp CCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEE
Confidence 5565543 223467999999988632 11 0 1236888999999999998754
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.1e-06 Score=73.47 Aligned_cols=110 Identities=10% Similarity=0.044 Sum_probs=81.2
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCCh--------------------------h
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINP--------------------------N 135 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~--------------------------~ 135 (288)
..+++|||+|+..|..+..++.....- ..++.+++++|..+ .
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~------------g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~ 172 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAH------------DVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAV 172 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHT------------TCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCC
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhc------------CCCCCEEEEEECCCCCCcccccccccccccccccccccchh
Confidence 345699999999999998887765210 00257899999632 1
Q ss_pred HHHHHHHHhhhcCCCCCceEEEEccccc-CC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 136 MLNVGKKRALERGYPDKSLLWVEGDAEA-LC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
.++.+++++...++..++++++.+|+.+ ++ .+.++||+|++.... .......|+.+.+.|+|||.+++
T Consensus 173 ~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~ 242 (282)
T 2wk1_A 173 SEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIV 242 (282)
T ss_dssp CHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEE
Confidence 4677888888888743689999999865 33 345689999987642 12346789999999999999986
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-05 Score=71.06 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=67.6
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
..+++++||+||++|.++..+++.. .+|+++|+.+ |-.... .. ++|.++++|
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg-------------------~~V~aVD~~~-l~~~l~----~~----~~V~~~~~d 260 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRN-------------------MWVYSVDNGP-MAQSLM----DT----GQVTWLRED 260 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTT-------------------CEEEEECSSC-CCHHHH----TT----TCEEEECSC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCC-------------------CEEEEEEhhh-cChhhc----cC----CCeEEEeCc
Confidence 3568999999999999999998873 7999999865 222221 11 689999999
Q ss_pred cccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccC---CcEEEEEec
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKR---GGRFLCLEL 208 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~p---gG~l~i~~~ 208 (288)
+.....+...+|+|+|..+. .+...+.-+.+.|.. ++.++.+.+
T Consensus 261 ~~~~~~~~~~~D~vvsDm~~----~p~~~~~l~~~wl~~~~~~~aI~~lKL 307 (375)
T 4auk_A 261 GFKFRPTRSNISWMVCDMVE----KPAKVAALMAQWLVNGWCRETIFNLKL 307 (375)
T ss_dssp TTTCCCCSSCEEEEEECCSS----CHHHHHHHHHHHHHTTSCSEEEEEEEC
T ss_pred cccccCCCCCcCEEEEcCCC----ChHHhHHHHHHHHhccccceEEEEEEe
Confidence 88876666789999998874 344444444444444 355554433
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-05 Score=71.70 Aligned_cols=107 Identities=17% Similarity=0.241 Sum_probs=78.7
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC---CC---CCceE
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG---YP---DKSLL 155 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~~---~~~v~ 155 (288)
.++.+||=||.|.|..+..++++ +..+++.+|+++.+++.+++.+.... .. .++++
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh------------------~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~ 265 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL------------------KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQ 265 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT------------------CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEE
T ss_pred CCCCeEEEECCCcHHHHHHHHhc------------------CCceeEEEccCHHHHHHHHhhchhhhhhhhcccccccee
Confidence 34579999999999999999886 34789999999999999998764321 11 24588
Q ss_pred EEEcccccCC----CCCCCeeEEEeccccccc-cC---------HHHHHHHHHhhccCCcEEEEE
Q 036563 156 WVEGDAEALC----FEDSTMDGYTIAFGIRNV-TH---------IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 156 ~~~~d~~~~~----~~~~~~D~v~~~~~l~~~-~~---------~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.+|+...- ...++||+|+....-... .+ ...+++.+++.|+|||.++..
T Consensus 266 vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 266 VLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp EEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 9999986541 234579999986432111 11 146789999999999999864
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.16 E-value=8.6e-06 Score=70.16 Aligned_cols=83 Identities=23% Similarity=0.238 Sum_probs=68.4
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+++++.+...+++.+||.+||.|..+..+++. + ++++++|.++.+++.+++ +..
T Consensus 11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~------------------g~VigiD~Dp~Ai~~A~~-L~~----- 65 (285)
T 1wg8_A 11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-G------------------GRVIGLDQDPEAVARAKG-LHL----- 65 (285)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-T------------------CEEEEEESCHHHHHHHHH-TCC-----
T ss_pred HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-C------------------CEEEEEeCCHHHHHHHHh-hcc-----
Confidence 356777888888899999999999999999987 3 799999999999999988 543
Q ss_pred CceEEEEcccccCC-----CCCCCeeEEEeccc
Q 036563 152 KSLLWVEGDAEALC-----FEDSTMDGYTIAFG 179 (288)
Q Consensus 152 ~~v~~~~~d~~~~~-----~~~~~~D~v~~~~~ 179 (288)
+++.++.+++.++. ...+++|.|++...
T Consensus 66 ~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~DLG 98 (285)
T 1wg8_A 66 PGLTVVQGNFRHLKRHLAALGVERVDGILADLG 98 (285)
T ss_dssp TTEEEEESCGGGHHHHHHHTTCSCEEEEEEECS
T ss_pred CCEEEEECCcchHHHHHHHcCCCCcCEEEeCCc
Confidence 48999999998763 22357999997554
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1e-06 Score=96.63 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=74.2
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccC-CCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQ-EETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
.+..+|||||.|+|..+..+++.+.. .+ ...+|+..|+|+...+.+++++... ++.....|
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~-------------~~~~~~~yt~td~s~~~~~~a~~~f~~~-----di~~~~~d 1300 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNT-------------QPVMDLDYTATDRNPQALEAAQAKLEQL-----HVTQGQWD 1300 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTT-------------SSSCEEEEEEECSSSSSTTTTTTTHHHH-----TEEEECCC
T ss_pred CCCceEEEECCCccHHHHHHHHhhcc-------------cCcccceEEEecCChHHHHHHHHHhhhc-----cccccccc
Confidence 35679999999999987777766520 00 1258999999998887777666442 23332234
Q ss_pred cccC-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCC
Q 036563 161 AEAL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDR 239 (288)
Q Consensus 161 ~~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (288)
.... ++....||+|++.+++|...+....|.+++++|+|||++++.+.... ..+..... . +....
T Consensus 1301 ~~~~~~~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~--~~~g~~~~-----------~-~~~~~ 1366 (2512)
T 2vz8_A 1301 PANPAPGSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAG--HPLGEMVG-----------F-LTSPE 1366 (2512)
T ss_dssp SSCCCC-----CCEEEEECC--------------------CCEEEEEEC-------------------------------
T ss_pred ccccccCCCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEecccc--cccccccc-----------c-ccccc
Confidence 3322 23445799999999999888889999999999999999998765321 00100000 0 00000
Q ss_pred cchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 240 GSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
.....+.+.++|.++|+++||..+....
T Consensus 1367 -------r~~~~~~~~~~w~~~l~~~gf~~~~~~~ 1394 (2512)
T 2vz8_A 1367 -------QGGRHLLSQDQWESLFAGASLHLVALKR 1394 (2512)
T ss_dssp ----------------CTTTTSSTTTTEEEEEEEE
T ss_pred -------ccCCcccCHHHHHHHHHhCCCceeeecc
Confidence 0011234677888899999999877643
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.4e-05 Score=69.06 Aligned_cols=106 Identities=11% Similarity=0.049 Sum_probs=68.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+||++|.++..+++..+ ...+.++|+...+...... ....+ .++.....+.
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~~~g-----------------v~sV~Gvdlg~~~~~~P~~-~~~~~---~~iv~~~~~~ 138 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAAQKE-----------------VMSVKGYTLGIEGHEKPIH-MQTLG---WNIVKFKDKS 138 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTT-----------------EEEEEEECCCCTTSCCCCC-CCBTT---GGGEEEECSC
T ss_pred CCCCEEEEcCCCCCHHHHHHHHhcC-----------------CceeeeEEecccccccccc-ccccC---CceEEeecCc
Confidence 5678999999999999999998652 3678899987543110000 00001 1233333333
Q ss_pred ccCCCCCCCeeEEEeccccccccCH-------HHHHHHHHhhccCC-cEEEEEecc
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHI-------EKALAEAYRVLKRG-GRFLCLELS 209 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~-------~~~l~~~~~~L~pg-G~l~i~~~~ 209 (288)
....+..+.+|+|++..+.. .... ..+|.-+.++|+|| |.|++--+.
T Consensus 139 di~~l~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 139 NVFTMPTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CTTTSCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred eeeecCCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 22334567899999987765 3221 23577778999999 999987666
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.6e-05 Score=58.97 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=58.9
Q ss_pred CCeEEEecCCcc-HHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 84 GMKHLDVAGGTG-DVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 84 ~~~vLDiG~G~G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
+.+|||||||+| ..+..++++. +..|+++|+++..++ +++.|+.
T Consensus 36 ~~rVlEVG~G~g~~vA~~La~~~------------------g~~V~atDInp~Av~-----------------~v~dDiF 80 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSDYIRKHS------------------KVDLVLTDIKPSHGG-----------------IVRDDIT 80 (153)
T ss_dssp SSEEEEETCTTCCHHHHHHHHHS------------------CCEEEEECSSCSSTT-----------------EECCCSS
T ss_pred CCcEEEEccCCChHHHHHHHHhC------------------CCeEEEEECCccccc-----------------eEEccCC
Confidence 579999999999 6998888764 488999999986533 6778887
Q ss_pred cCCCCC-CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 163 ALCFED-STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 163 ~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+..... +.||+|.+... .++....+.++.+. -|.-+++..+
T Consensus 81 ~P~~~~Y~~~DLIYsirP---P~El~~~i~~lA~~--v~adliI~pL 122 (153)
T 2k4m_A 81 SPRMEIYRGAALIYSIRP---PAEIHSSLMRVADA--VGARLIIKPL 122 (153)
T ss_dssp SCCHHHHTTEEEEEEESC---CTTTHHHHHHHHHH--HTCEEEEECB
T ss_pred CCcccccCCcCEEEEcCC---CHHHHHHHHHHHHH--cCCCEEEEcC
Confidence 643211 37999976443 23555555555553 3566776443
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=7.2e-05 Score=63.24 Aligned_cols=110 Identities=16% Similarity=0.033 Sum_probs=67.0
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
+|.+..-..|+++|||+||++|.++..+++..+ ...+.+.++...- . ..+....+ ++
T Consensus 64 EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~-----------------vg~V~G~vig~D~-~----~~P~~~~~-~G 120 (269)
T 2px2_A 64 WLVERRFVQPIGKVVDLGCGRGGWSYYAATMKN-----------------VQEVRGYTKGGPG-H----EEPMLMQS-YG 120 (269)
T ss_dssp HHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTT-----------------EEEEEEECCCSTT-S----CCCCCCCS-TT
T ss_pred HHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcC-----------------CCCceeEEEcccc-c----cCCCcccC-CC
Confidence 444444457789999999999999999988732 1233333332220 0 00000000 12
Q ss_pred e---EEEEc-ccccCCCCCCCeeEEEeccccccccCH-------HHHHHHHHhhccCCc-EEEEEecc
Q 036563 154 L---LWVEG-DAEALCFEDSTMDGYTIAFGIRNVTHI-------EKALAEAYRVLKRGG-RFLCLELS 209 (288)
Q Consensus 154 v---~~~~~-d~~~~~~~~~~~D~v~~~~~l~~~~~~-------~~~l~~~~~~L~pgG-~l~i~~~~ 209 (288)
+ .+.++ |+..+. ..++|+|+|..+-. ..+. ..+|.-+.+.|+||| .|++--+.
T Consensus 121 v~~i~~~~G~Df~~~~--~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 121 WNIVTMKSGVDVFYKP--SEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp GGGEEEECSCCGGGSC--CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred ceEEEeeccCCccCCC--CCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 2 55556 887643 45799999987653 2221 125777779999999 88886666
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00018 Score=61.87 Aligned_cols=114 Identities=16% Similarity=0.092 Sum_probs=75.2
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+.+.....++++|||+||++|.++..++...+ ...|+++|+...--+.= ......++ +.
T Consensus 85 ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~g-----------------v~~V~avdvG~~~he~P-~~~~ql~w--~l 144 (321)
T 3lkz_A 85 WLVERRFLEPVGKVIDLGCGRGGWCYYMATQKR-----------------VQEVRGYTKGGPGHEEP-QLVQSYGW--NI 144 (321)
T ss_dssp HHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTT-----------------EEEEEEECCCSTTSCCC-CCCCBTTG--GG
T ss_pred HHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcC-----------------CCEEEEEEcCCCCccCc-chhhhcCC--cc
Confidence 344445567788999999999999998888763 36899999866511000 00011222 24
Q ss_pred eEEEEc-ccccCCCCCCCeeEEEeccccccccCH-------HHHHHHHHhhccCC-cEEEEEeccC
Q 036563 154 LLWVEG-DAEALCFEDSTMDGYTIAFGIRNVTHI-------EKALAEAYRVLKRG-GRFLCLELSH 210 (288)
Q Consensus 154 v~~~~~-d~~~~~~~~~~~D~v~~~~~l~~~~~~-------~~~l~~~~~~L~pg-G~l~i~~~~~ 210 (288)
+.+..+ |+..++. ..+|+|+|... ...+++ .++|+-+.+.|+++ |.|+|--+..
T Consensus 145 V~~~~~~Dv~~l~~--~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 145 VTMKSGVDVFYRPS--ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp EEEECSCCTTSSCC--CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred eEEEeccCHhhCCC--CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 777777 8766643 56999999887 544443 23566677889988 8887744444
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00017 Score=60.13 Aligned_cols=113 Identities=15% Similarity=0.090 Sum_probs=75.6
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
++.+.....++++|||+||++|.++..++...+ ..+|+++|+...-.+.- ......++ +.
T Consensus 69 ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g-----------------~~~V~avdvG~~ghe~P-~~~~s~gw--n~ 128 (267)
T 3p8z_A 69 WFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKK-----------------VTEVRGYTKGGPGHEEP-VPMSTYGW--NI 128 (267)
T ss_dssp HHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTT-----------------EEEEEEECCCSTTSCCC-CCCCCTTT--TS
T ss_pred HHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcC-----------------CCEEEEEecCCCCccCc-chhhhcCc--Cc
Confidence 344444567888999999999999998888864 36899999865422100 00123344 47
Q ss_pred eEEEEc-ccccCCCCCCCeeEEEeccccccccCH-------HHHHHHHHhhccCCcEEEEEeccC
Q 036563 154 LLWVEG-DAEALCFEDSTMDGYTIAFGIRNVTHI-------EKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 154 v~~~~~-d~~~~~~~~~~~D~v~~~~~l~~~~~~-------~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+.|..+ |+..++ ..++|.|+|...= ..+++ .++|+-+.+.|++ |.++|--+..
T Consensus 129 v~fk~gvDv~~~~--~~~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~p 189 (267)
T 3p8z_A 129 VKLMSGKDVFYLP--PEKCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNP 189 (267)
T ss_dssp EEEECSCCGGGCC--CCCCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCC
T ss_pred eEEEeccceeecC--CccccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccC
Confidence 899998 876554 3569999997764 22222 2366777889998 7777644443
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00043 Score=60.41 Aligned_cols=76 Identities=13% Similarity=0.082 Sum_probs=52.7
Q ss_pred eEEEEcccccC-C-CCCCCeeEEEeccc-cccccCH--HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccc
Q 036563 154 LLWVEGDAEAL-C-FEDSTMDGYTIAFG-IRNVTHI--EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVI 228 (288)
Q Consensus 154 v~~~~~d~~~~-~-~~~~~~D~v~~~~~-l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 228 (288)
+.+..+|+.+. + +.+..+|+++...- -..-+++ ..+++.++++++|||.+..
T Consensus 168 L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT----------------------- 224 (308)
T 3vyw_A 168 LKVLLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS----------------------- 224 (308)
T ss_dssp EEEEESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE-----------------------
T ss_pred EEEEechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE-----------------------
Confidence 45677887553 2 34457999997541 1111222 6799999999999999973
Q ss_pred ccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 229 PAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
|.....++..|+++||++....-+
T Consensus 225 -----------------------Ytaag~VRR~L~~aGF~V~k~~G~ 248 (308)
T 3vyw_A 225 -----------------------YSSSLSVRKSLLTLGFKVGSSREI 248 (308)
T ss_dssp -----------------------SCCCHHHHHHHHHTTCEEEEEECC
T ss_pred -----------------------EeCcHHHHHHHHHCCCEEEecCCC
Confidence 225577889999999997766543
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00016 Score=63.77 Aligned_cols=85 Identities=28% Similarity=0.347 Sum_probs=68.7
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+++++.+...+++.+||..||.|..+..+++.++ +.++++++|.++.+++.++ ++. ..
T Consensus 47 ~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg----------------~~GrVig~D~Dp~Al~~A~-rL~-----~~ 104 (347)
T 3tka_A 47 DEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLG----------------EEGRLLAIDRDPQAIAVAK-TID-----DP 104 (347)
T ss_dssp HHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCC----------------TTCEEEEEESCHHHHHHHT-TCC-----CT
T ss_pred HHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHH-hhc-----CC
Confidence 5677888888899999999999999999999875 5689999999999999884 431 16
Q ss_pred ceEEEEcccccCC-----CC-CCCeeEEEeccc
Q 036563 153 SLLWVEGDAEALC-----FE-DSTMDGYTIAFG 179 (288)
Q Consensus 153 ~v~~~~~d~~~~~-----~~-~~~~D~v~~~~~ 179 (288)
++.++.+++.++. .. .+++|.|+....
T Consensus 105 Rv~lv~~nF~~l~~~L~~~g~~~~vDgILfDLG 137 (347)
T 3tka_A 105 RFSIIHGPFSALGEYVAERDLIGKIDGILLDLG 137 (347)
T ss_dssp TEEEEESCGGGHHHHHHHTTCTTCEEEEEEECS
T ss_pred cEEEEeCCHHHHHHHHHhcCCCCcccEEEECCc
Confidence 8999999987762 11 136999998665
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.001 Score=58.99 Aligned_cols=153 Identities=8% Similarity=-0.013 Sum_probs=97.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC-------C-----
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG-------Y----- 149 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-------~----- 149 (288)
.+...|+.+|||.......+.... ++..++=+|. |+.++.-++.+...+ .
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~-----------------~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~ 157 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMF-----------------PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDT 157 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHC-----------------TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcC-----------------CCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccc
Confidence 345689999999999888887653 2467777887 777766666655431 0
Q ss_pred -------CCCceEEEEcccccCC--------C-CCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 150 -------PDKSLLWVEGDAEALC--------F-EDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 150 -------~~~~v~~~~~d~~~~~--------~-~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
...+..++..|+.+.. . ..+...++++-.++.+++. ...+++.+.+.. |+|.+++.|...+
T Consensus 158 ~~~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~ 236 (334)
T 1rjd_A 158 AKSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGG 236 (334)
T ss_dssp CCTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred cccccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence 0157888989987631 1 2245788888888888863 456788787776 7888877776655
Q ss_pred ---ChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCc
Q 036563 212 ---DIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQ 268 (288)
Q Consensus 212 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 268 (288)
...+-..+...+... .+..+ .++..+++.++..+.|+++||+
T Consensus 237 ~~~~~~fg~~m~~~l~~~----rg~~l-----------~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 237 SQPNDRFGAIMQSNLKES----RNLEM-----------PTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp CSTTCCHHHHHHHHHHHH----HCCCC-----------TTTTTTCSHHHHHGGGTTSSEE
T ss_pred CCCcchHHHHHHHHhhcc----cCCcc-----------cccccCCCHHHHHHHHHHCCCC
Confidence 333333222222110 00000 0111256888999999999996
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00049 Score=59.98 Aligned_cols=57 Identities=25% Similarity=0.312 Sum_probs=46.7
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
+.+.++.... .++..|||++||+|.++..++.. +.+++++|+++.+++.+++++...
T Consensus 224 l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~-------------------g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 224 LAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARW-------------------GRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp HHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHT-------------------TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc-------------------CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 3345555555 56789999999999999988775 379999999999999999998654
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0019 Score=55.67 Aligned_cols=108 Identities=14% Similarity=0.037 Sum_probs=72.1
Q ss_pred CCCCCCeEEEecC------CccHHHHHHHHhhhhhhhhhhhcccccccCCC-ceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 80 NPFPGMKHLDVAG------GTGDVAFRILDTVNSIKRRALQDVLEDDLQEE-TRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 80 ~~~~~~~vLDiG~------G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.+++|||+|+ .+|.. +++... +. +.++++|+.+-.. . .
T Consensus 106 ~vp~gmrVLDLGA~s~kg~APGS~---VLr~~~----------------p~g~~VVavDL~~~~s---------d----a 153 (344)
T 3r24_A 106 AVPYNMRVIHFGAGSDKGVAPGTA---VLRQWL----------------PTGTLLVDSDLNDFVS---------D----A 153 (344)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHHH---HHHHHS----------------CTTCEEEEEESSCCBC---------S----S
T ss_pred eecCCCEEEeCCCCCCCCCCCcHH---HHHHhC----------------CCCcEEEEeeCccccc---------C----C
Confidence 3467899999996 66763 344433 33 6999999977321 0 2
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccc---cc--cC------HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHH
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIR---NV--TH------IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYD 221 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~---~~--~~------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 221 (288)
. .++++|...... ..+||+|++..+-. +. +. .+.++.-+.+.|+|||.|++--+.......+..+..
T Consensus 154 ~-~~IqGD~~~~~~-~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L~~lrk 231 (344)
T 3r24_A 154 D-STLIGDCATVHT-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMG 231 (344)
T ss_dssp S-EEEESCGGGEEE-SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHT
T ss_pred C-eEEEcccccccc-CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHHHHHHh
Confidence 3 448899765432 46899999976522 11 11 356788889999999999987776666555555554
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0014 Score=58.50 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=55.8
Q ss_pred HHHHHHhhcCCC------CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHh
Q 036563 71 WKDRLVSKLNPF------PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRA 144 (288)
Q Consensus 71 ~~~~~~~~l~~~------~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~ 144 (288)
..+.+++.+... ++..|||||+|.|.++..+++.. ...+++++|+++..+...++..
T Consensus 40 i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~-----------------~~~~vvavE~D~~l~~~L~~~~ 102 (353)
T 1i4w_A 40 VYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKY-----------------CPRQYSLLEKRSSLYKFLNAKF 102 (353)
T ss_dssp HHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHH-----------------CCSEEEEECCCHHHHHHHHHHT
T ss_pred HHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhC-----------------CCCEEEEEecCHHHHHHHHHhc
Confidence 345555655543 35789999999999999999874 1368999999999998888766
Q ss_pred hhcCCCCCceEEEEcccccC
Q 036563 145 LERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 145 ~~~~~~~~~v~~~~~d~~~~ 164 (288)
.. ++++++.+|+..+
T Consensus 103 -~~----~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 103 -EG----SPLQILKRDPYDW 117 (353)
T ss_dssp -TT----SSCEEECSCTTCH
T ss_pred -cC----CCEEEEECCccch
Confidence 22 5899999998554
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.004 Score=53.06 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=44.7
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
+.+++... .++..|||..||+|.++..+.+. +.+++++|+++.+++.+++++...
T Consensus 203 ~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~-------------------gr~~ig~e~~~~~~~~~~~r~~~~ 257 (260)
T 1g60_A 203 ERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL-------------------GRNFIGCDMNAEYVNQANFVLNQL 257 (260)
T ss_dssp HHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT-------------------TCEEEEEESCHHHHHHHHHHHHC-
T ss_pred HHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc-------------------CCeEEEEeCCHHHHHHHHHHHHhc
Confidence 44445444 56789999999999999988776 379999999999999999988654
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0015 Score=56.31 Aligned_cols=99 Identities=14% Similarity=0.069 Sum_probs=76.3
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+..+||+=+|||.++..++.. ..+++.+|.++...+..++++... .++++...|...
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~-------------------~d~~vfvE~~~~a~~~L~~Nl~~~----~~~~V~~~D~~~ 148 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS-------------------QDRLYLCELHPTEYNFLLKLPHFN----KKVYVNHTDGVS 148 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT-------------------TSEEEEECCSHHHHHHHTTSCCTT----SCEEEECSCHHH
T ss_pred CCCceeEeCCcHHHHHHHcCC-------------------CCeEEEEeCCHHHHHHHHHHhCcC----CcEEEEeCcHHH
Confidence 457999999999999888774 378999999999999888887642 579999999644
Q ss_pred C----CCCCCCeeEEEeccccccccCHHHHHHHHHh--hccCCcEEEE
Q 036563 164 L----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYR--VLKRGGRFLC 205 (288)
Q Consensus 164 ~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~--~L~pgG~l~i 205 (288)
. ..+..+||+|++......-.+..++++.+.+ .+.|+|.+++
T Consensus 149 ~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~ 196 (283)
T 2oo3_A 149 KLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV 196 (283)
T ss_dssp HHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence 2 1234579999999987654566666666665 4558898886
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.31 Score=42.94 Aligned_cols=159 Identities=10% Similarity=0.068 Sum_probs=96.9
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC--------------
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG-------------- 148 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-------------- 148 (288)
+...|+-+|||.=.....+..... +...++=+|. |+.++.=++.+...+
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~----------------~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~ 152 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDL----------------LSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDT 152 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTC----------------CCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSS
T ss_pred CCCEEEEeCCCcCchHHHhcCCCC----------------CCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccc
Confidence 356899999998777666654310 2356777776 544443222222100
Q ss_pred -------CCCCceEEEEcccccC----------CCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEecc
Q 036563 149 -------YPDKSLLWVEGDAEAL----------CFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 149 -------~~~~~v~~~~~d~~~~----------~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+...+..++..|+.+. .+..+..-++++=.++.+++ ....+|+.+.+.. |+|.+++.|..
T Consensus 153 ~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i 231 (334)
T 3iei_A 153 LQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQV 231 (334)
T ss_dssp CBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred cccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEecc
Confidence 0125678888888653 13344566778777888876 3456777777765 56667677877
Q ss_pred CCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 210 HVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
.+..++-+.+...+...-.+. .++..+++.+...+.|.++||+.++..+.
T Consensus 232 ~p~d~fg~~M~~~l~~~g~pl----------------~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 232 NMGDRFGQIMIENLRRRQCDL----------------AGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp CTTSHHHHHHHHHHHTTTCCC----------------TTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred CCCCHHHHHHHHHHHHhCCCC----------------cccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 776665555544433211111 11223458889999999999998776543
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.039 Score=46.83 Aligned_cols=115 Identities=16% Similarity=0.035 Sum_probs=73.0
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEe-----CChh----------------------H
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCD-----INPN----------------------M 136 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D-----~s~~----------------------~ 136 (288)
++.|+|+|+-.|..+..++.... +++ .+.+..+++++| +.+. .
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~---------~l~-~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~ 139 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRG---------VYE-PYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAY 139 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHH---------HHC-TTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHH
T ss_pred CCeEEEEecccCHHHHHHHHHHH---------Hhc-ccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHH
Confidence 45899999999998888765421 000 011457899999 3321 1
Q ss_pred HHHHHH---HhhhcCCCCCceEEEEcccccC-C-----CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 137 LNVGKK---RALERGYPDKSLLWVEGDAEAL-C-----FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 137 ~~~a~~---~~~~~~~~~~~v~~~~~d~~~~-~-----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
++...+ +....+....++.++.+++.+. + .+..++|++++..-. .......++.+...|+|||.+++-+
T Consensus 140 l~~~l~~~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 140 LKEVLDAHECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp HHHHHHHHHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred HHHHHHHHhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcC
Confidence 111111 1112333236899999998653 2 345579999987742 2345667999999999999999765
Q ss_pred ccC
Q 036563 208 LSH 210 (288)
Q Consensus 208 ~~~ 210 (288)
+..
T Consensus 218 ~~~ 220 (257)
T 3tos_A 218 LDN 220 (257)
T ss_dssp TTC
T ss_pred CCC
Confidence 543
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.1 Score=45.55 Aligned_cols=103 Identities=18% Similarity=0.161 Sum_probs=71.3
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC-CCCceEEEEccccc
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY-PDKSLLWVEGDAEA 163 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~v~~~~~d~~~ 163 (288)
..||++|||-=.....+.. ++...++-+| .|..++..++.+...+. +..+..++..|+.+
T Consensus 104 ~QvV~LGaGlDTra~Rl~~------------------~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d 164 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDW------------------PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ 164 (310)
T ss_dssp CEEEEETCTTCCHHHHSCC------------------CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred CeEEEeCCCCCchhhhccC------------------CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh
Confidence 4699999997655433321 1247889999 59888888888865332 12578889899875
Q ss_pred C--------CCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEE
Q 036563 164 L--------CFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 164 ~--------~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~ 206 (288)
- .+..+..-++++-.+++++++ ...+++.+...+.||+.+++-
T Consensus 165 ~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d 217 (310)
T 2uyo_A 165 DWPPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 217 (310)
T ss_dssp CHHHHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred hHHHHHHhccCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 1 022234567778888888864 466888888888888888754
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.04 Score=49.14 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=67.1
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+.....++.+||-+|+|. |..+..+++..+ + +|+++|.+++.++.+++. +. -
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G------------------a~~Vi~~~~~~~~~~~a~~l----Ga----~ 237 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVCG------------------ASIIIAVDIVESRLELAKQL----GA----T 237 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHT------------------CSEEEEEESCHHHHHHHHHH----TC----S
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCeEEEECCCHHHHHHHHHc----CC----C
Confidence 455667889999999986 888888888763 5 799999999988877653 21 1
Q ss_pred EEEEcccccC-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 155 LWVEGDAEAL-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d~~~~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.++..+-.++ ....+.+|+|+-... ....+....+.|+++|+++++..
T Consensus 238 ~vi~~~~~~~~~~~~~~~~gg~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 238 HVINSKTQDPVAAIKEITDGGVNFALESTG------SPEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp EEEETTTSCHHHHHHHHTTSCEEEEEECSC------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred EEecCCccCHHHHHHHhcCCCCcEEEECCC------CHHHHHHHHHHHhcCCEEEEeCC
Confidence 2222211111 112236999974332 24567889999999999987544
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.054 Score=52.57 Aligned_cols=116 Identities=15% Similarity=0.153 Sum_probs=64.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhh-hhhhhhcccccccCCCceEEEEeCCh---hHHHHHHHH-----------hhhc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSI-KRRALQDVLEDDLQEETRIYVCDINP---NMLNVGKKR-----------ALER 147 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~D~s~---~~~~~a~~~-----------~~~~ 147 (288)
+.-+|+|+|.|+|.......+..... ..++ .......+++.+|..| +.+..+-.. ...+
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p------~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~ 131 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSP------NATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQW 131 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCT------TSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCC------CCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhC
Confidence 44689999999999888777754210 0000 0000125788999844 444432211 1111
Q ss_pred CC----------CCC--ceEEEEcccccC-C-CC---CCCeeEEEeccccccc-cC--HHHHHHHHHhhccCCcEEE
Q 036563 148 GY----------PDK--SLLWVEGDAEAL-C-FE---DSTMDGYTIAFGIRNV-TH--IEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 148 ~~----------~~~--~v~~~~~d~~~~-~-~~---~~~~D~v~~~~~l~~~-~~--~~~~l~~~~~~L~pgG~l~ 204 (288)
.. .+. .+.+..+|+.+. + +. ...+|.++...---.. ++ ...++..+.++++|||.+.
T Consensus 132 ~~~~~~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~ 208 (689)
T 3pvc_A 132 PLPLAGCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFS 208 (689)
T ss_dssp CCCCSEEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEE
T ss_pred cccCCCceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEE
Confidence 10 111 345667777542 2 21 4679999975421111 11 1678999999999999886
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.15 Score=49.36 Aligned_cols=116 Identities=12% Similarity=0.160 Sum_probs=64.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhh-hhhhhhcccccccCCCceEEEEeC---ChhHHHHHHHH-----------hhhc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSI-KRRALQDVLEDDLQEETRIYVCDI---NPNMLNVGKKR-----------ALER 147 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~D~---s~~~~~~a~~~-----------~~~~ 147 (288)
+.-+|+|+|.|+|.......+..... ..+| .......+++++|. +++.+..+-.. ...+
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p------~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~ 139 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHP------QAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQW 139 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCT------TSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHC
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCc------CCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhC
Confidence 34589999999999887776664200 0000 00001246889998 66666533321 1112
Q ss_pred CCC----------C--CceEEEEcccccC-C-CC---CCCeeEEEeccccccc-cC--HHHHHHHHHhhccCCcEEE
Q 036563 148 GYP----------D--KSLLWVEGDAEAL-C-FE---DSTMDGYTIAFGIRNV-TH--IEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 148 ~~~----------~--~~v~~~~~d~~~~-~-~~---~~~~D~v~~~~~l~~~-~~--~~~~l~~~~~~L~pgG~l~ 204 (288)
... + -.+.+..+|+.+. + +. ...+|+++...--... ++ -..+++.+.++++|||.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~ 216 (676)
T 3ps9_A 140 PMPLPGCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLA 216 (676)
T ss_dssp CCCCSEEEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEE
T ss_pred cccCCCceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEE
Confidence 110 0 1233455665442 2 11 3579999874421111 12 2668999999999999986
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.078 Score=47.76 Aligned_cols=105 Identities=19% Similarity=0.179 Sum_probs=68.0
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||-+|+|. |..+..+++..+ + +++++|.+++.++.+++. + .
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G------------------a~~Vi~~~~~~~~~~~a~~l----G-----a 231 (398)
T 2dph_A 179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLG------------------AACVIVGDQNPERLKLLSDA----G-----F 231 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHHT------------------CSEEEEEESCHHHHHHHHTT----T-----C
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCEEEEEcCCHHHHHHHHHc----C-----C
Confidence 445667889999999986 888888888763 5 899999999888776532 2 1
Q ss_pred EEEEcccccC------CC-CCCCeeEEEeccccccc--------cCHHHHHHHHHhhccCCcEEEEEec
Q 036563 155 LWVEGDAEAL------CF-EDSTMDGYTIAFGIRNV--------THIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d~~~~------~~-~~~~~D~v~~~~~l~~~--------~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
..+...-.+. .. ....+|+|+-...-... .+....+....+.|+++|+++++..
T Consensus 232 ~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 232 ETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp EEEETTSSSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred cEEcCCCcchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence 2332211111 01 12259999854432210 0123468888999999999986543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.14 Score=46.01 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=56.8
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.+++|+-||.|.++.-+.+.. -..+.++|+++.+.+..+.+. ++..++.+|+.++
T Consensus 3 ~~vidLFsG~GGlslG~~~aG------------------~~~v~avE~d~~a~~t~~~N~-------~~~~~~~~DI~~~ 57 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG------------------FDVKMAVEIDQHAINTHAINF-------PRSLHVQEDVSLL 57 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT------------------CEEEEEECSCHHHHHHHHHHC-------TTSEEECCCGGGC
T ss_pred CeEEEEccCcCHHHHHHHHCC------------------CcEEEEEeCCHHHHHHHHHhC-------CCCceEecChhhc
Confidence 589999999999998887763 245779999999888777664 3567788898776
Q ss_pred C---C-----CCCCeeEEEeccccccc
Q 036563 165 C---F-----EDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 165 ~---~-----~~~~~D~v~~~~~l~~~ 183 (288)
. + ....+|+++.....+.+
T Consensus 58 ~~~~~~~~~~~~~~~D~i~ggpPCQ~f 84 (376)
T 3g7u_A 58 NAEIIKGFFKNDMPIDGIIGGPPCQGF 84 (376)
T ss_dssp CHHHHHHHHCSCCCCCEEEECCCCCTT
T ss_pred CHHHHHhhcccCCCeeEEEecCCCCCc
Confidence 3 1 24579999988776555
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.16 Score=44.68 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=65.4
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
.....++.+||-+|+|. |..+..+++.. +.+++++|.+++.++.+++. +. . ..
T Consensus 171 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~------------------Ga~Vi~~~~~~~~~~~~~~l----Ga---~-~v 224 (348)
T 3two_A 171 FSKVTKGTKVGVAGFGGLGSMAVKYAVAM------------------GAEVSVFARNEHKKQDALSM----GV---K-HF 224 (348)
T ss_dssp HTTCCTTCEEEEESCSHHHHHHHHHHHHT------------------TCEEEEECSSSTTHHHHHHT----TC---S-EE
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHC------------------CCeEEEEeCCHHHHHHHHhc----CC---C-ee
Confidence 34667889999999976 77888888775 37999999999988877652 21 1 22
Q ss_pred EEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 157 VEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 157 ~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+ .+...+ . ..+|+|+-...- ...+....+.|+++|+++++..
T Consensus 225 ~-~~~~~~--~-~~~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 225 Y-TDPKQC--K-EELDFIISTIPT------HYDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp E-SSGGGC--C-SCEEEEEECCCS------CCCHHHHHTTEEEEEEEEECCC
T ss_pred c-CCHHHH--h-cCCCEEEECCCc------HHHHHHHHHHHhcCCEEEEECC
Confidence 2 333322 2 279999853321 1246678899999999997644
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.11 Score=45.94 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=66.2
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||-+|+|. |..+..+++..+ . +|+++|.+++.++.+++. +. .
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G------------------a~~Vi~~~~~~~~~~~~~~l----Ga----~ 213 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLG------------------AGRIFAVGSRKHCCDIALEY----GA----T 213 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTT------------------CSSEEEECCCHHHHHHHHHH----TC----C
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CcEEEEECCCHHHHHHHHHh----CC----c
Confidence 556677889999999876 777777777753 5 899999999888877654 21 1
Q ss_pred EEEEcccccC-----C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 155 LWVEGDAEAL-----C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.++..+-.++ . .....+|+|+-... ....+..+.+.|+++|+++++..
T Consensus 214 ~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g------~~~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 214 DIINYKNGDIVEQILKATDGKGVDKVVIAGG------DVHTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp EEECGGGSCHHHHHHHHTTTCCEEEEEECSS------CTTHHHHHHHHEEEEEEEEECCC
T ss_pred eEEcCCCcCHHHHHHHHcCCCCCCEEEECCC------ChHHHHHHHHHHhcCCEEEEecc
Confidence 2222111111 0 12236999984322 12457788999999999987544
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.075 Score=48.27 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=48.3
Q ss_pred CCCCCeEEEecCCccHHHHHHHH-hhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh--c-CCCCCceEE
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILD-TVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE--R-GYPDKSLLW 156 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~--~-~~~~~~v~~ 156 (288)
..++..++|+||+.|.++..++. ..+ +..+|+++|++|...+..+++... + +.. +++.+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~----------------~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~-~~v~~ 286 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKG----------------KFERVWMIEPDRINLQTLQNVLRRYTDTNFA-SRITV 286 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTS----------------CCSEEEEECCCHHHHHHHHHHHHHTTTSTTG-GGEEE
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcC----------------CCCEEEEEcCCHHHHHHHHHHHHhhhccCCC-CCEEE
Confidence 36788999999999999998884 432 237999999999999999998876 1 221 36666
Q ss_pred EEccc
Q 036563 157 VEGDA 161 (288)
Q Consensus 157 ~~~d~ 161 (288)
+..-+
T Consensus 287 ~~~al 291 (409)
T 2py6_A 287 HGCGA 291 (409)
T ss_dssp ECSEE
T ss_pred EEeEE
Confidence 65443
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.2 Score=44.59 Aligned_cols=100 Identities=13% Similarity=0.173 Sum_probs=66.7
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||=+|+|. |..+..+++..+ + +++++|.++..++.+++. +..
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G------------------a~~Vi~~~~~~~~~~~a~~l----Ga~---- 229 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAG------------------ATTVILSTRQATKRRLAEEV----GAT---- 229 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT------------------CSEEEEECSCHHHHHHHHHH----TCS----
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCEEEEECCCHHHHHHHHHc----CCC----
Confidence 445667788999999875 777777877753 5 899999999888877653 211
Q ss_pred EEEEc---cccc-C-C---CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 155 LWVEG---DAEA-L-C---FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 155 ~~~~~---d~~~-~-~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
..+.. |..+ . . ...+.+|+|+-.. .....+..+.+.|+++|.++++..
T Consensus 230 ~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~------G~~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 230 ATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA------GVAETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp EEECTTSSCHHHHHHSTTSSSTTCEEEEEECS------CCHHHHHHHHHHEEEEEEEEECSC
T ss_pred EEECCCCcCHHHHHHhhhhccCCCCCEEEECC------CCHHHHHHHHHHhccCCEEEEEec
Confidence 12211 1111 0 1 2234799998432 224568889999999999987544
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.12 Score=45.84 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=65.3
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||-+|+|. |..+..+++..+ . +++++|.+++.++.+++. +..
T Consensus 165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G------------------a~~Vi~~~~~~~~~~~a~~l----Ga~---- 218 (356)
T 1pl8_A 165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG------------------AAQVVVTDLSATRLSKAKEI----GAD---- 218 (356)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT------------------CSEEEEEESCHHHHHHHHHT----TCS----
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCEEEEECCCHHHHHHHHHh----CCC----
Confidence 344567788999999876 778888887753 5 899999999888777642 211
Q ss_pred EEEEcc---ccc----C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 155 LWVEGD---AEA----L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d---~~~----~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
..+..+ ..+ + ......+|+|+-.-. ....+....+.|+++|+++++..
T Consensus 219 ~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 219 LVLQISKESPQEIARKVEGQLGCKPEVTIECTG------AEASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp EEEECSSCCHHHHHHHHHHHHTSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred EEEcCcccccchHHHHHHHHhCCCCCEEEECCC------ChHHHHHHHHHhcCCCEEEEEec
Confidence 222221 011 1 011146899874322 23467888999999999987543
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.42 Score=41.82 Aligned_cols=105 Identities=11% Similarity=0.046 Sum_probs=66.1
Q ss_pred HhhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 76 VSKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
.......++.+||=.|+|. |..+..+++..+ ...++++|.+++.++.+++. +. .
T Consensus 153 ~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G-----------------~~~vi~~~~~~~k~~~a~~l----Ga----~ 207 (346)
T 4a2c_A 153 FHLAQGCENKNVIIIGAGTIGLLAIQCAVALG-----------------AKSVTAIDISSEKLALAKSF----GA----M 207 (346)
T ss_dssp HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTT-----------------CSEEEEEESCHHHHHHHHHT----TC----S
T ss_pred HHHhccCCCCEEEEECCCCcchHHHHHHHHcC-----------------CcEEEEEechHHHHHHHHHc----CC----e
Confidence 3455667788999999976 666777777653 24678999999888877653 21 2
Q ss_pred EEEEcccccCC------CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 155 LWVEGDAEALC------FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 155 ~~~~~d~~~~~------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
..+...-.+.. -....+|+|+-.. .....++...+.|+++|.+++......
T Consensus 208 ~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~------G~~~~~~~~~~~l~~~G~~v~~g~~~~ 264 (346)
T 4a2c_A 208 QTFNSSEMSAPQMQSVLRELRFNQLILETA------GVPQTVELAVEIAGPHAQLALVGTLHQ 264 (346)
T ss_dssp EEEETTTSCHHHHHHHHGGGCSSEEEEECS------CSHHHHHHHHHHCCTTCEEEECCCCSS
T ss_pred EEEeCCCCCHHHHHHhhcccCCcccccccc------cccchhhhhhheecCCeEEEEEeccCC
Confidence 22222111110 1123578876432 234567888999999999997654443
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.19 Score=40.22 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=60.4
Q ss_pred hhcCCCCCCeEEEecC--CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAG--GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||..|+ |.|.....++... +.+++++|.+++..+.+++ .+. .
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~------------------G~~V~~~~~~~~~~~~~~~----~g~---~- 85 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMI------------------GARIYTTAGSDAKREMLSR----LGV---E- 85 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHH------------------TCEEEEEESSHHHHHHHHT----TCC---S-
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHc------------------CCEEEEEeCCHHHHHHHHH----cCC---C-
Confidence 3445677889999995 3456666665554 3789999999887765543 221 1
Q ss_pred EEEEcccccC-----C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 155 LWVEGDAEAL-----C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 155 ~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.....+-.+. . .....+|+++.+.. ...++.+.+.|+++|+++++.
T Consensus 86 ~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 86 YVGDSRSVDFADEILELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp EEEETTCSTHHHHHHHHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred EEeeCCcHHHHHHHHHHhCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEEc
Confidence 1121111110 0 11236999985432 245788899999999998754
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.23 Score=43.68 Aligned_cols=76 Identities=11% Similarity=0.048 Sum_probs=53.8
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceE-EEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRI-YVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
..+++|+-||.|.++..+.+..- +...+ .++|+++.+.+.-+.+... . +..+|+.
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~----------------~~~~v~~a~e~d~~a~~ty~~N~~~-------~-~~~~DI~ 65 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSI----------------NINATFIPFDINEIANKIYSKNFKE-------E-VQVKNLD 65 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSC----------------CCCEEEEEECCCHHHHHHHHHHHCC-------C-CBCCCTT
T ss_pred CCEEEEECCChhHHHHHHHHcCC----------------CceEEEEEEECCHHHHHHHHHHCCC-------C-cccCChh
Confidence 46899999999999988876520 01345 7999999998888777632 2 4567777
Q ss_pred cCC---CCCCCeeEEEeccccccc
Q 036563 163 ALC---FEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 163 ~~~---~~~~~~D~v~~~~~l~~~ 183 (288)
++. ++...+|+++.....+.+
T Consensus 66 ~~~~~~i~~~~~Dil~ggpPCQ~f 89 (327)
T 3qv2_A 66 SISIKQIESLNCNTWFMSPPCQPY 89 (327)
T ss_dssp TCCHHHHHHTCCCEEEECCCCTTC
T ss_pred hcCHHHhccCCCCEEEecCCccCc
Confidence 663 222358999988776555
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.18 Score=44.25 Aligned_cols=100 Identities=22% Similarity=0.239 Sum_probs=66.8
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
......++.+||-+|+|. |..+..+++..+ .+++++|.+++.++.+++. +. -.
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G------------------a~Vi~~~~~~~~~~~~~~l----Ga----~~ 213 (340)
T 3s2e_A 160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMG------------------LRVAAVDIDDAKLNLARRL----GA----EV 213 (340)
T ss_dssp HTTTCCTTSEEEEECCSTTHHHHHHHHHHTT------------------CEEEEEESCHHHHHHHHHT----TC----SE
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHCC------------------CeEEEEeCCHHHHHHHHHc----CC----CE
Confidence 444667888999999986 888888888763 7999999999988877653 21 12
Q ss_pred EEEcccccC----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 156 WVEGDAEAL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 156 ~~~~d~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+...-.++ ....+.+|.++-... ....++.+.+.|+++|.++++..
T Consensus 214 ~i~~~~~~~~~~~~~~~g~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 214 AVNARDTDPAAWLQKEIGGAHGVLVTAV------SPKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp EEETTTSCHHHHHHHHHSSEEEEEESSC------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred EEeCCCcCHHHHHHHhCCCCCEEEEeCC------CHHHHHHHHHHhccCCEEEEeCC
Confidence 222211111 001136888874322 24568888999999999987543
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.25 Score=44.33 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=68.0
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||-+|+|. |..+..+++..+ + +++++|.+++.++.+++. + ..
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~G------------------a~~Vi~~~~~~~~~~~a~~l----G-----a~ 232 (398)
T 1kol_A 180 TAGVGPGSTVYVAGAGPVGLAAAASARLLG------------------AAVVIVGDLNPARLAHAKAQ----G-----FE 232 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTT------------------CSEEEEEESCHHHHHHHHHT----T-----CE
T ss_pred HcCCCCCCEEEEECCcHHHHHHHHHHHHCC------------------CCeEEEEcCCHHHHHHHHHc----C-----Cc
Confidence 45667888999999876 888888888763 5 799999999988877642 2 12
Q ss_pred EEEccccc-----C-CC-CCCCeeEEEeccccc---------cccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 156 WVEGDAEA-----L-CF-EDSTMDGYTIAFGIR---------NVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 156 ~~~~d~~~-----~-~~-~~~~~D~v~~~~~l~---------~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.+...-.+ + .. ....+|+|+-.-.-. +..++...++...+.|+++|+++++.
T Consensus 233 ~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 233 IADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EEETTSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEccCCcchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 22221111 1 01 123699998644321 12234457888999999999998754
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=94.36 E-value=0.05 Score=48.22 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=54.1
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.+++|+.||.|.++..+..... ....+.++|+++.+++..+.+.. +..++.+|+.++
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~----------------~~~~v~~~E~d~~a~~~~~~N~~-------~~~~~~~Di~~~ 59 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCI----------------PAQVVAAIDVNTVANEVYKYNFP-------HTQLLAKTIEGI 59 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTC----------------SEEEEEEECCCHHHHHHHHHHCT-------TSCEECSCGGGC
T ss_pred CeEEEeCcCccHHHHHHHHCCC----------------CceEEEEEeCCHHHHHHHHHhcc-------ccccccCCHHHc
Confidence 5899999999999988877620 01468999999999998888763 345677888776
Q ss_pred C---CCCCCeeEEEeccccccc
Q 036563 165 C---FEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 165 ~---~~~~~~D~v~~~~~l~~~ 183 (288)
. ++...+|+++.....+.+
T Consensus 60 ~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 60 TLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CHHHHHHHCCSEEEECCC----
T ss_pred cHhHcCcCCcCEEEEcCCCcch
Confidence 3 111258999998775444
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.21 Score=44.55 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=67.1
Q ss_pred HHhhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 75 LVSKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.......++.+||=+|+|. |..+..+++..+ . +|+++|.+++.++.+++. +..
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~G------------------a~~Vi~~~~~~~~~~~a~~l----Ga~-- 240 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAG------------------ASRIIGIDIDSKKYETAKKF----GVN-- 240 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHT------------------CSCEEEECSCTTHHHHHHTT----TCC--
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCeEEEEcCCHHHHHHHHHc----CCc--
Confidence 33555677888999999975 778888888763 5 899999999988877542 221
Q ss_pred ceEEEEcc--cccC-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEEec
Q 036563 153 SLLWVEGD--AEAL-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCLEL 208 (288)
Q Consensus 153 ~v~~~~~d--~~~~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 208 (288)
..+... -.++ ....+.+|+|+-... ....+..+.+.|+++ |+++++..
T Consensus 241 --~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g------~~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 241 --EFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp --EEECGGGCSSCHHHHHHHHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred --EEEccccCchhHHHHHHHhcCCCCCEEEECCC------CHHHHHHHHHHhhccCCEEEEEcc
Confidence 222211 0111 112237999984322 245688899999997 99987554
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.3 Score=43.38 Aligned_cols=100 Identities=15% Similarity=0.072 Sum_probs=65.6
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+.....++.+||-+|+|. |..+..+++..+ + +|+++|.+++.++.+++. +..
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G------------------a~~Vi~~~~~~~~~~~a~~l----Ga~---- 238 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAG------------------ASRIIGVGTHKDKFPKAIEL----GAT---- 238 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHT------------------CSEEEEECSCGGGHHHHHHT----TCS----
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCeEEEECCCHHHHHHHHHc----CCc----
Confidence 445667888999999875 777788887763 5 899999999988877642 211
Q ss_pred EEEEcc-----ccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEEec
Q 036563 155 LWVEGD-----AEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d-----~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 208 (288)
.++..+ +.+ + ....+.+|+|+-... ....+....+.|+++ |+++++..
T Consensus 239 ~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g------~~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 239 ECLNPKDYDKPIYEVICEKTNGGVDYAVECAG------RIETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp EEECGGGCSSCHHHHHHHHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred EEEecccccchHHHHHHHHhCCCCCEEEECCC------CHHHHHHHHHHHhcCCCEEEEEcc
Confidence 122111 110 0 111236999984322 245678889999999 99987543
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.23 Score=42.99 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=61.9
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
......++.+||=+|+|. |..+..+++..+ +++++++ +++.++.+++. + --.
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G------------------a~Vi~~~-~~~~~~~~~~l----G----a~~ 188 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAG------------------YVVDLVS-ASLSQALAAKR----G----VRH 188 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHT------------------CEEEEEC-SSCCHHHHHHH----T----EEE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CEEEEEE-ChhhHHHHHHc----C----CCE
Confidence 556677889999999964 788888888764 7999999 88888887653 1 112
Q ss_pred EEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 156 WVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 156 ~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.+. |.+.+ ...+|+|+-... . ..+..+.+.|+++|+++++
T Consensus 189 v~~-d~~~v---~~g~Dvv~d~~g-----~--~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 189 LYR-EPSQV---TQKYFAIFDAVN-----S--QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp EES-SGGGC---CSCEEEEECC--------------TTGGGEEEEEEEEEE
T ss_pred EEc-CHHHh---CCCccEEEECCC-----c--hhHHHHHHHhcCCCEEEEE
Confidence 222 42222 457999974322 1 1235678999999999876
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.45 Score=42.03 Aligned_cols=102 Identities=16% Similarity=0.201 Sum_probs=67.5
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCce-EEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETR-IYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||=+|+|. |..+..+++..+ .+ ++++|.+++.++.+++. ... -+
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G------------------a~~Vi~~~~~~~~~~~a~~l-~~~-----~~ 228 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAG------------------ACPLVITDIDEGRLKFAKEI-CPE-----VV 228 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHTT------------------CCSEEEEESCHHHHHHHHHH-CTT-----CE
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCEEEEECCCHHHHHHHHHh-chh-----cc
Confidence 445667788999999876 778888888763 55 99999999998888765 211 12
Q ss_pred EEEEc-----cccc-C--CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 155 LWVEG-----DAEA-L--CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 155 ~~~~~-----d~~~-~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+... |..+ + ......+|+|+-... ....+..+.+.|+++|+++++..
T Consensus 229 ~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 229 THKVERLSAEESAKKIVESFGGIEPAVALECTG------VESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp EEECCSCCHHHHHHHHHHHTSSCCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCCCCCEEEECCC------ChHHHHHHHHHhcCCCEEEEEcc
Confidence 22211 1110 0 012346999984322 24467888999999999997644
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.38 Score=42.31 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=64.7
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
......++.+||-+|+|. |..+..+++.. +++++++|.+++.++.+++. +. . .
T Consensus 162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~------------------Ga~Vi~~~~~~~~~~~~~~l----Ga---~-~ 215 (352)
T 1e3j_A 162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAY------------------GAFVVCTARSPRRLEVAKNC----GA---D-V 215 (352)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT------------------TCEEEEEESCHHHHHHHHHT----TC---S-E
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCEEEEEcCCHHHHHHHHHh----CC---C-E
Confidence 344567788999999875 77777777775 36799999999888877642 21 1 2
Q ss_pred EEEccc-ccC----C--CC---CCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 156 WVEGDA-EAL----C--FE---DSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 156 ~~~~d~-~~~----~--~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+..+- .+. . .. ...+|+|+-... ....++...+.|+++|+++++..
T Consensus 216 ~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 216 TLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSG------NEKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp EEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred EEcCcccccHHHHHHHHhccccCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 222110 111 0 11 246899874332 23467888999999999987543
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.04 E-value=0.42 Score=42.49 Aligned_cols=98 Identities=15% Similarity=0.133 Sum_probs=63.1
Q ss_pred cCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 79 LNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
....++.+||-+|+|. |..+..+++.. +++++++|.+++.++.+++. +. ..++
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~------------------Ga~Vi~~~~~~~~~~~a~~l----Ga----~~vi 243 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAM------------------GAHVVAFTTSEAKREAAKAL----GA----DEVV 243 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHT------------------TCEEEEEESSGGGHHHHHHH----TC----SEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC------------------CCEEEEEeCCHHHHHHHHHc----CC----cEEe
Confidence 4567788999999975 77777777775 37899999999988877652 21 1222
Q ss_pred Eccccc-CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 158 EGDAEA-LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 158 ~~d~~~-~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
...-.+ .......+|+|+-...- ...++...+.|+++|.++++..
T Consensus 244 ~~~~~~~~~~~~~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 244 NSRNADEMAAHLKSFDFILNTVAA------PHNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp ETTCHHHHHTTTTCEEEEEECCSS------CCCHHHHHTTEEEEEEEEECCC
T ss_pred ccccHHHHHHhhcCCCEEEECCCC------HHHHHHHHHHhccCCEEEEecc
Confidence 211111 00011469999854331 1235667899999999987543
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.4 Score=42.50 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=65.4
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||-+|+|. |..+..+++..+ . +++++|.+++.++.+++. +..
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~G------------------a~~Vi~~~~~~~~~~~~~~l----Ga~---- 237 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG------------------ASRIIGVDINKDKFARAKEF----GAT---- 237 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHT------------------CSEEEEECSCGGGHHHHHHH----TCS----
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCeEEEEcCCHHHHHHHHHc----CCc----
Confidence 445667888999999875 777777777763 5 899999999988887643 211
Q ss_pred EEEEcc-----ccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEEec
Q 036563 155 LWVEGD-----AEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d-----~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 208 (288)
.++... +.+ + ....+.+|+|+-... ....++.+.+.|+++ |+++++..
T Consensus 238 ~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 238 ECINPQDFSKPIQEVLIEMTDGGVDYSFECIG------NVKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp EEECGGGCSSCHHHHHHHHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred eEeccccccccHHHHHHHHhCCCCCEEEECCC------cHHHHHHHHHhhccCCcEEEEEec
Confidence 122111 100 0 111236999874322 245678889999999 99987543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.44 Score=42.19 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=66.2
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
+.....++.+||-+|+|. |..+..+++.. +++++++|.+++.++.+++. +. -.
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~------------------Ga~Vi~~~~~~~~~~~~~~l----Ga----~~ 236 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKAT------------------GAEVIVTSSSREKLDRAFAL----GA----DH 236 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHT------------------TCEEEEEESCHHHHHHHHHH----TC----SE
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCEEEEEecCchhHHHHHHc----CC----CE
Confidence 455667889999999876 77777777775 47999999999888877553 21 12
Q ss_pred EEEcccccC-----C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 156 WVEGDAEAL-----C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 156 ~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
.+..+..++ . .....+|+|+-... ...+..+.+.|+++|.++++...
T Consensus 237 vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 237 GINRLEEDWVERVYALTGDRGADHILEIAG-------GAGLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp EEETTTSCHHHHHHHHHTTCCEEEEEEETT-------SSCHHHHHHHEEEEEEEEEECCC
T ss_pred EEcCCcccHHHHHHHHhCCCCceEEEECCC-------hHHHHHHHHHhhcCCEEEEEecC
Confidence 222221111 0 12236999985443 12366778899999999986543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.44 Score=41.68 Aligned_cols=101 Identities=19% Similarity=0.119 Sum_probs=64.6
Q ss_pred HHhhcCCCCCCeEEEecCC--ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 75 LVSKLNPFPGMKHLDVAGG--TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.....++.+||-+|+| .|..+..+++..+ ++++++|.+++.++.+++. +.
T Consensus 136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G------------------a~Vi~~~~~~~~~~~~~~l----ga--- 190 (340)
T 3gms_A 136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQILN------------------FRLIAVTRNNKHTEELLRL----GA--- 190 (340)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHT------------------CEEEEEESSSTTHHHHHHH----TC---
T ss_pred HHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcC------------------CEEEEEeCCHHHHHHHHhC----CC---
Confidence 3455667888999999987 4777777777753 7999999999888877653 21
Q ss_pred ceEEEEcccccC-----C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 153 SLLWVEGDAEAL-----C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 153 ~v~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
-..+...-.++ . .....+|+++-+.. ... +....+.|+++|.++++..
T Consensus 191 -~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g------~~~-~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 191 -AYVIDTSTAPLYETVMELTNGIGADAAIDSIG------GPD-GNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp -SEEEETTTSCHHHHHHHHTTTSCEEEEEESSC------HHH-HHHHHHTEEEEEEEEECCC
T ss_pred -cEEEeCCcccHHHHHHHHhCCCCCcEEEECCC------Chh-HHHHHHHhcCCCEEEEEee
Confidence 11222111111 0 12236999985332 122 2334589999999997644
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=93.64 E-value=0.82 Score=41.02 Aligned_cols=58 Identities=12% Similarity=0.212 Sum_probs=39.3
Q ss_pred cCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 79 LNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
+..+.+..|+|+|+|+|.++..+++..... . +.....+|+.+|+|+...+.=++.+..
T Consensus 76 ~g~p~~~~ivElGaG~GtLa~diL~~l~~~-p---------~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 133 (387)
T 1zkd_A 76 ADEPQTLRLIEIGPGRGTMMADALRALRVL-P---------ILYQSLSVHLVEINPVLRQKQQTLLAG 133 (387)
T ss_dssp TTCCSSEEEEEECCTTSHHHHHHHHHHTTS-H---------HHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred cCCCCCcEEEEECCCcchHHHHHHHHHHhC-C---------ccccccEEEEEecCHHHHHHHHHHhcC
Confidence 344445679999999999999998775210 0 000246899999999877755555433
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.63 E-value=0.36 Score=42.85 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=65.0
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||-+|+|. |..+..+++..+ . +++++|.+++.++.+++. +..
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G------------------a~~Vi~~~~~~~~~~~~~~l----Ga~---- 239 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAG------------------AKRIIAVDLNPDKFEKAKVF----GAT---- 239 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTT------------------CSEEEEECSCGGGHHHHHHT----TCC----
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCEEEEEcCCHHHHHHHHHh----CCc----
Confidence 445667888999999875 777777777753 5 899999999988877642 211
Q ss_pred EEEEccc--ccC-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEEec
Q 036563 155 LWVEGDA--EAL-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d~--~~~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 208 (288)
..+...- .++ ....+.+|+|+-... ....+..+.+.|+++ |+++++..
T Consensus 240 ~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 240 DFVNPNDHSEPISQVLSKMTNGGVDFSLECVG------NVGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp EEECGGGCSSCHHHHHHHHHTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred eEEeccccchhHHHHHHHHhCCCCCEEEECCC------CHHHHHHHHHHhhcCCcEEEEEcC
Confidence 1221110 011 011236899874322 245678889999999 99987543
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.35 Score=42.95 Aligned_cols=101 Identities=18% Similarity=0.131 Sum_probs=65.5
Q ss_pred HhhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 76 VSKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.......++.+||-+|+|. |..+..+++..+ + +|+++|.+++.++.+++. +..
T Consensus 188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G------------------a~~Vi~~~~~~~~~~~a~~l----Ga~--- 242 (376)
T 1e3i_A 188 INTAKVTPGSTCAVFGLGCVGLSAIIGCKIAG------------------ASRIIAIDINGEKFPKAKAL----GAT--- 242 (376)
T ss_dssp HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTT------------------CSEEEEECSCGGGHHHHHHT----TCS---
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCeEEEEcCCHHHHHHHHHh----CCc---
Confidence 3445667888999999875 777777777753 5 899999999988877542 211
Q ss_pred eEEEEcc-----ccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEEec
Q 036563 154 LLWVEGD-----AEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCLEL 208 (288)
Q Consensus 154 v~~~~~d-----~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 208 (288)
..+... +.+ + ....+.+|+|+-... ....+..+.+.|+++ |+++++..
T Consensus 243 -~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G------~~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 243 -DCLNPRELDKPVQDVITELTAGGVDYSLDCAG------TAQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp -EEECGGGCSSCHHHHHHHHHTSCBSEEEESSC------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred -EEEccccccchHHHHHHHHhCCCccEEEECCC------CHHHHHHHHHHhhcCCCEEEEECC
Confidence 122111 100 0 011236899874322 245678889999999 99987544
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.56 E-value=0.45 Score=42.25 Aligned_cols=100 Identities=16% Similarity=0.103 Sum_probs=64.7
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||-+|+|. |..+..+++..+ . +++++|.+++.++.+++. +. .
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G------------------a~~Vi~~~~~~~~~~~~~~l----Ga----~ 238 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAG------------------AARIIGVDINKDKFAKAKEV----GA----T 238 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTT------------------CSEEEEECSCGGGHHHHHHT----TC----S
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCeEEEEcCCHHHHHHHHHh----CC----c
Confidence 445667888999999875 777777777753 5 899999999988877542 21 1
Q ss_pred EEEEcc-----ccc-C-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEEec
Q 036563 155 LWVEGD-----AEA-L-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d-----~~~-~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 208 (288)
..+..+ +.+ + ....+.+|+|+-... ....+....+.|+++ |+++++..
T Consensus 239 ~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 239 ECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG------RLDTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp EEECGGGCSSCHHHHHHHHTTSCBSEEEECSC------CHHHHHHHHHHBCTTTCEEEECSC
T ss_pred eEecccccchhHHHHHHHHhCCCCcEEEECCC------CHHHHHHHHHHhhcCCcEEEEecc
Confidence 122111 100 0 111236999874322 235678889999999 99987543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=2.3 Score=41.11 Aligned_cols=165 Identities=13% Similarity=0.200 Sum_probs=90.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc-------------CC
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER-------------GY 149 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------------~~ 149 (288)
+...|+-+|||.=.....+....+... ...+....++=+|. |+.++.=++.+... ..
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~---------~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~~~~ 176 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQS---------QQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSEDKDY 176 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGG---------GGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSSCSS
T ss_pred CCcEEEEcccccCcceeeeeccCcccc---------cccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhcccccccc
Confidence 345799999998777777655420000 00001345666665 44433333333211 00
Q ss_pred C---------CCceEEEEcccccCC----------C-CCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEe
Q 036563 150 P---------DKSLLWVEGDAEALC----------F-EDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 150 ~---------~~~v~~~~~d~~~~~----------~-~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
. ..+..++..|+.+.. + ..+..-++++-.++.+++ ...++|+.+.++ ++|.+++.|
T Consensus 177 ~~~~~~~~~~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e 254 (695)
T 2zwa_A 177 VDDSNVDFLTTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILE 254 (695)
T ss_dssp CSCTTCCCEECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEE
T ss_pred ccccccccccCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEE
Confidence 0 126788888887631 2 333455666667777775 345678777754 678777777
Q ss_pred ccCC---ChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 208 LSHV---DIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 208 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
...| ...+-+.+...+.. .|..+ ..+..+++.++..+.|.++||+.+...++
T Consensus 255 ~~~~~~~~d~f~~~m~~~~~~-----~g~~l-----------~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 255 QLIPKGPFEPFSKQMLAHFKR-----NDSPL-----------QSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp ECCTTCTTSHHHHHHHHHHHH-----TTCCC-----------CGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred eecCCCCCChHHHHHHHHHHH-----cCCCC-----------CccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 6555 34443433333211 11100 01123568899999999999998766543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.59 Score=40.58 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=64.9
Q ss_pred hhcCCCCCCeEEEec-CC-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVA-GG-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG-~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
.....+++.+||-.| +| .|..+..+++..+ +++++++.+++.++.+++. +. -
T Consensus 134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G------------------a~Vi~~~~~~~~~~~~~~~----Ga----~ 187 (325)
T 3jyn_A 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALG------------------AKLIGTVSSPEKAAHAKAL----GA----W 187 (325)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHT------------------CEEEEEESSHHHHHHHHHH----TC----S
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCC------------------CEEEEEeCCHHHHHHHHHc----CC----C
Confidence 445667888999998 34 4777777777763 7999999999888877643 21 1
Q ss_pred EEEEcccccC------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 155 LWVEGDAEAL------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d~~~~------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
..+..+-.++ ......+|+++-+..- ..+....+.|+++|+++++..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 188 ETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp EEEETTTSCHHHHHHHHTTTCCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECCC
T ss_pred EEEeCCCccHHHHHHHHhCCCCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEec
Confidence 2222211111 0123469998854331 356778899999999997644
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.41 E-value=0.18 Score=44.13 Aligned_cols=56 Identities=14% Similarity=0.263 Sum_probs=44.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+.+++... .++..|||.-||+|..+..+.+. +.+++++|+++...+.+++++...+
T Consensus 243 ~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~-------------------gr~~ig~e~~~~~~~~~~~r~~~~~ 298 (323)
T 1boo_A 243 EFFIRMLT-EPDDLVVDIFGGSNTTGLVAERE-------------------SRKWISFEMKPEYVAASAFRFLDNN 298 (323)
T ss_dssp HHHHHHHC-CTTCEEEETTCTTCHHHHHHHHT-------------------TCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred HHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc-------------------CCCEEEEeCCHHHHHHHHHHHHhcc
Confidence 34444443 56789999999999999887776 3899999999999999999876554
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=93.20 E-value=0.3 Score=42.85 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=53.3
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+++|+.||.|.++..+.... ...+.++|+++...+..+.+.... . .+|+.+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG------------------~~~v~~~e~d~~a~~t~~~N~~~~-------~--~~Di~~ 63 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG------------------AECVYSNEWDKYAQEVYEMNFGEK-------P--EGDITQ 63 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT------------------CEEEEEECCCHHHHHHHHHHHSCC-------C--BSCGGG
T ss_pred CCcEEEECCCcCHHHHHHHHCC------------------CeEEEEEeCCHHHHHHHHHHcCCC-------C--cCCHHH
Confidence 4689999999999998887752 256789999999988888776432 1 577776
Q ss_pred CCC-CCCCeeEEEeccccccc
Q 036563 164 LCF-EDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 164 ~~~-~~~~~D~v~~~~~l~~~ 183 (288)
+.. .-..+|+++.....+.+
T Consensus 64 ~~~~~~~~~D~l~~gpPCQ~f 84 (327)
T 2c7p_A 64 VNEKTIPDHDILCAGFPCQAF 84 (327)
T ss_dssp SCGGGSCCCSEEEEECCCTTT
T ss_pred cCHhhCCCCCEEEECCCCCCc
Confidence 531 11258999987765544
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.77 Score=40.61 Aligned_cols=93 Identities=17% Similarity=0.159 Sum_probs=61.6
Q ss_pred CCCeEEEec-CCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc-
Q 036563 83 PGMKHLDVA-GGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG- 159 (288)
Q Consensus 83 ~~~~vLDiG-~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~- 159 (288)
++.+||=+| +|. |..+..+++.. .+.+++++|.+++.++.+++. +.. .++..
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~-----------------~g~~Vi~~~~~~~~~~~~~~l----Gad----~vi~~~ 225 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQR-----------------TDLTVIATASRPETQEWVKSL----GAH----HVIDHS 225 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHH-----------------CCSEEEEECSSHHHHHHHHHT----TCS----EEECTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHh-----------------cCCEEEEEeCCHHHHHHHHHc----CCC----EEEeCC
Confidence 677899998 554 88888888864 248999999999888877642 211 12211
Q ss_pred -ccc-cC-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 160 -DAE-AL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 160 -d~~-~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+.. .+ ....+.+|+|+-.. .....+..+.+.|+++|+++++
T Consensus 226 ~~~~~~v~~~~~~g~Dvvid~~------g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 226 KPLAAEVAALGLGAPAFVFSTT------HTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp SCHHHHHHTTCSCCEEEEEECS------CHHHHHHHHHHHSCTTCEEEEC
T ss_pred CCHHHHHHHhcCCCceEEEECC------CchhhHHHHHHHhcCCCEEEEE
Confidence 110 01 12334799887422 2345788899999999999875
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.57 Score=40.81 Aligned_cols=102 Identities=15% Similarity=0.047 Sum_probs=65.4
Q ss_pred HHhhcCCCCCCeEEEecC--CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 75 LVSKLNPFPGMKHLDVAG--GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.....++.+||-.|+ |.|..+..+++.. ++++++++.+++.++.+.+.+ +.
T Consensus 141 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~------------------Ga~Vi~~~~~~~~~~~~~~~~---g~--- 196 (336)
T 4b7c_A 141 LLDVGQPKNGETVVISGAAGAVGSVAGQIARLK------------------GCRVVGIAGGAEKCRFLVEEL---GF--- 196 (336)
T ss_dssp HHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHT------------------TCEEEEEESSHHHHHHHHHTT---CC---
T ss_pred HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHC------------------CCEEEEEeCCHHHHHHHHHHc---CC---
Confidence 335566778899999998 3477777777765 479999999998777663332 21
Q ss_pred ceEEEEcccccC-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 153 SLLWVEGDAEAL-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 153 ~v~~~~~d~~~~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
...+...-.+. ....+.+|+++-+.. ...+..+.+.|+++|+++++..
T Consensus 197 -~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 197 -DGAIDYKNEDLAAGLKRECPKGIDVFFDNVG-------GEILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp -SEEEETTTSCHHHHHHHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred -CEEEECCCHHHHHHHHHhcCCCceEEEECCC-------cchHHHHHHHHhhCCEEEEEee
Confidence 11222111111 011346999875433 1368888999999999987543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=93.11 E-value=0.22 Score=43.64 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=44.0
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCCh---hHHHHHHHHhhhc
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINP---NMLNVGKKRALER 147 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~---~~~~~a~~~~~~~ 147 (288)
+.+.++.... .++..|||.-||+|..+.++.+. +.+++++|+++ ...+.+++++...
T Consensus 231 l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~-------------------~r~~ig~e~~~~~~~~~~~~~~Rl~~~ 290 (319)
T 1eg2_A 231 VIERLVRALS-HPGSTVLDFFAGSGVTARVAIQE-------------------GRNSICTDAAPVFKEYYQKQLTFLQDD 290 (319)
T ss_dssp HHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHH-------------------TCEEEEEESSTHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHc-------------------CCcEEEEECCccHHHHHHHHHHHHHHc
Confidence 3344555443 46789999999999999888876 38999999999 9999999887554
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.58 Score=40.75 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=63.6
Q ss_pred hhcCCCCCCeEEEecC-C-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAG-G-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||-+|+ | .|..+..+++.. ++++++++.+++.++.+++. +. -
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~------------------Ga~Vi~~~~~~~~~~~~~~~----ga----~ 195 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMK------------------GAHTIAVASTDEKLKIAKEY----GA----E 195 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHT------------------TCEEEEEESSHHHHHHHHHT----TC----S
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHC------------------CCEEEEEeCCHHHHHHHHHc----CC----c
Confidence 3445678889999994 3 467777777765 47999999999888766542 21 1
Q ss_pred EEEEcccccC-----C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 155 LWVEGDAEAL-----C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
..+..+-.++ . .....+|+++-+..- ..+..+.+.|+++|.++++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 196 YLINASKEDILRQVLKFTNGKGVDASFDSVGK-------DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp EEEETTTSCHHHHHHHHTTTSCEEEEEECCGG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred EEEeCCCchHHHHHHHHhCCCCceEEEECCCh-------HHHHHHHHHhccCCEEEEEcC
Confidence 2222211111 0 123469999854431 357778899999999987543
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.77 Score=41.23 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=61.6
Q ss_pred CCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 80 NPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
...++.+||=+|+|. |..+..+++..+ . +++++|.++..++.+++. +. -.++
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~G------------------a~~Vi~~~~~~~~~~~~~~l----Ga----~~vi 263 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAG------------------ASKVILSEPSEVRRNLAKEL----GA----DHVI 263 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT------------------CSEEEEECSCHHHHHHHHHH----TC----SEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC------------------CCEEEEECCCHHHHHHHHHc----CC----CEEE
Confidence 567788999999875 777777777753 5 899999999888877654 21 1222
Q ss_pred EcccccC-----C-CCCCCeeEEEeccccccccCHHHHHHHHHhhc----cCCcEEEEEecc
Q 036563 158 EGDAEAL-----C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVL----KRGGRFLCLELS 209 (288)
Q Consensus 158 ~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L----~pgG~l~i~~~~ 209 (288)
..+-.++ . .....+|+|+-.. ......+..+.+.| +++|+++++...
T Consensus 264 ~~~~~~~~~~i~~~t~g~g~D~vid~~-----g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~ 320 (404)
T 3ip1_A 264 DPTKENFVEAVLDYTNGLGAKLFLEAT-----GVPQLVWPQIEEVIWRARGINATVAIVARA 320 (404)
T ss_dssp CTTTSCHHHHHHHHTTTCCCSEEEECS-----SCHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred cCCCCCHHHHHHHHhCCCCCCEEEECC-----CCcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence 2111111 0 1223699997432 22323445555555 999999975443
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.32 Score=42.63 Aligned_cols=97 Identities=11% Similarity=0.020 Sum_probs=63.0
Q ss_pred CCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 80 NPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
.. ++.+||-+|+|. |..+..+++... ++.+++++|.+++.++.+++. +. ..++.
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~----------------~Ga~Vi~~~~~~~~~~~~~~l----Ga----~~vi~ 222 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALM----------------KNITIVGISRSKKHRDFALEL----GA----DYVSE 222 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHC----------------TTCEEEEECSCHHHHHHHHHH----TC----SEEEC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhc----------------CCCEEEEEeCCHHHHHHHHHh----CC----CEEec
Confidence 45 788999999975 777777777750 137899999999888877653 21 11221
Q ss_pred c----cc-ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 159 G----DA-EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 159 ~----d~-~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
. |. ..+. ....+|+|+-... ....++.+.+.|+++|.++++..
T Consensus 223 ~~~~~~~~~~~~-~g~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 223 MKDAESLINKLT-DGLGASIAIDLVG------TEETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEEESSC------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred cccchHHHHHhh-cCCCccEEEECCC------ChHHHHHHHHHhhcCCEEEEeCC
Confidence 1 11 1111 1236999985432 23467888999999999987543
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.66 Score=40.33 Aligned_cols=96 Identities=16% Similarity=0.088 Sum_probs=61.7
Q ss_pred hhcCCCCCCeEEEecC--CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAG--GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+.....++.+||-.|| |.|..+..++... +++++++|.+++.++.+++ + +. .
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~------------------G~~V~~~~~~~~~~~~~~~-~---g~---~- 192 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLK------------------GCKVVGAAGSDEKIAYLKQ-I---GF---D- 192 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHT------------------TCEEEEEESSHHHHHHHHH-T---TC---S-
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHC------------------CCEEEEEeCCHHHHHHHHh-c---CC---c-
Confidence 4456677889999998 3466666666654 4799999999887776633 2 21 1
Q ss_pred EEEEccccc---C-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 155 LWVEGDAEA---L-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 155 ~~~~~d~~~---~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
... |..+ . ....+.+|+++.+.. ...+....+.|+++|+++++.
T Consensus 193 ~~~--d~~~~~~~~~~~~~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 193 AAF--NYKTVNSLEEALKKASPDGYDCYFDNVG-------GEFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEE--ETTSCSCHHHHHHHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECC
T ss_pred EEE--ecCCHHHHHHHHHHHhCCCCeEEEECCC-------hHHHHHHHHHHhcCCEEEEEe
Confidence 111 2211 1 011246999986543 134788889999999998754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.57 Score=41.08 Aligned_cols=99 Identities=18% Similarity=0.169 Sum_probs=63.3
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
..... ++.+||-+|+|. |..+..+++.. +. +++++|.+++.++.+++. +. .
T Consensus 162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~------------------Ga~~Vi~~~~~~~~~~~~~~~----Ga----~ 214 (348)
T 2d8a_A 162 LAGPI-SGKSVLITGAGPLGLLGIAVAKAS------------------GAYPVIVSEPSDFRRELAKKV----GA----D 214 (348)
T ss_dssp TTSCC-TTCCEEEECCSHHHHHHHHHHHHT------------------TCCSEEEECSCHHHHHHHHHH----TC----S
T ss_pred HhcCC-CCCEEEEECCCHHHHHHHHHHHHc------------------CCCEEEEECCCHHHHHHHHHh----CC----C
Confidence 34455 788999999964 66777777765 36 899999998887777643 21 1
Q ss_pred EEEEcccccC-----CC-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 155 LWVEGDAEAL-----CF-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d~~~~-----~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
..+..+-.++ .. ....+|+|+-... ....++.+.+.|+++|+++.+..
T Consensus 215 ~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 215 YVINPFEEDVVKEVMDITDGNGVDVFLEFSG------APKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp EEECTTTSCHHHHHHHHTTTSCEEEEEECSC------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCCcCHHHHHHHHcCCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEcc
Confidence 1222111111 01 1235999985432 23567888999999999987543
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.69 E-value=0.43 Score=42.57 Aligned_cols=101 Identities=22% Similarity=0.269 Sum_probs=64.3
Q ss_pred hhcC-CCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLN-PFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~-~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
.... ..++.+||-+|+|. |..+..+++..+ ..++++++.+++.++.+++. +. -
T Consensus 188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-----------------a~~Vi~~~~~~~~~~~~~~l----Ga----~ 242 (380)
T 1vj0_A 188 DEYPESFAGKTVVIQGAGPLGLFGVVIARSLG-----------------AENVIVIAGSPNRLKLAEEI----GA----D 242 (380)
T ss_dssp HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTT-----------------BSEEEEEESCHHHHHHHHHT----TC----S
T ss_pred HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcC-----------------CceEEEEcCCHHHHHHHHHc----CC----c
Confidence 3445 67788999999764 777777777652 14999999999888877642 21 1
Q ss_pred EEEEcc---ccc----C-CC-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 155 LWVEGD---AEA----L-CF-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d---~~~----~-~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.++..+ -.+ + .. ....+|+|+-... ....+....+.|+++|.++++..
T Consensus 243 ~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 243 LTLNRRETSVEERRKAIMDITHGRGADFILEATG------DSRALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp EEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSS------CTTHHHHHHHHEEEEEEEEECCC
T ss_pred EEEeccccCcchHHHHHHHHhCCCCCcEEEECCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 222221 111 1 01 1236999984332 12357778899999999987544
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.62 Score=40.81 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=64.3
Q ss_pred hhcCCCCCCeEEEecC-C-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAG-G-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||-.|+ | .|..+..+++.. ++++++++.+++.++.+++. +. -
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~------------------Ga~Vi~~~~~~~~~~~~~~~----ga----~ 206 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGM------------------GAKVIAVVNRTAATEFVKSV----GA----D 206 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT------------------TCEEEEEESSGGGHHHHHHH----TC----S
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHc------------------CCEEEEEeCCHHHHHHHHhc----CC----c
Confidence 4556678889999997 3 477777777775 47999999999888877653 21 1
Q ss_pred EEEEcccccC-----C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 155 LWVEGDAEAL-----C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 155 ~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
..+..+ .++ . .....+|+++-+..- ..+..+.+.|+++|.++++.
T Consensus 207 ~v~~~~-~~~~~~v~~~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 207 IVLPLE-EGWAKAVREATGGAGVDMVVDPIGG-------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp EEEESS-TTHHHHHHHHTTTSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred EEecCc-hhHHHHHHHHhCCCCceEEEECCch-------hHHHHHHHhhcCCCEEEEEE
Confidence 222222 211 0 122369999854432 24677889999999998754
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.6 Score=40.85 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=65.1
Q ss_pred CCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 80 NPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
...++.+||-+|+|. |..+..+++..+ ..+++++|.+++.++.+++. +.. ..+.
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-----------------~~~Vi~~~~~~~~~~~~~~l----Ga~----~~i~ 222 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-----------------AARVIAVDLDDDRLALAREV----GAD----AAVK 222 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHC-----------------CCEEEEEESCHHHHHHHHHT----TCS----EEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-----------------CCEEEEEcCCHHHHHHHHHc----CCC----EEEc
Confidence 456788999999976 778888887762 47999999999988877653 221 2222
Q ss_pred ccc--cc-C-CC-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 159 GDA--EA-L-CF-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 159 ~d~--~~-~-~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+- .+ + .. ....+|+|+-.- .....++.+.+.|+++|+++++..
T Consensus 223 ~~~~~~~~v~~~t~g~g~d~v~d~~------G~~~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 223 SGAGAADAIRELTGGQGATAVFDFV------GAQSTIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp CSTTHHHHHHHHHGGGCEEEEEESS------CCHHHHHHHHHHEEEEEEEEECSC
T ss_pred CCCcHHHHHHHHhCCCCCeEEEECC------CCHHHHHHHHHHHhcCCEEEEECC
Confidence 211 00 0 01 123699987432 224578889999999999987543
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=92.34 E-value=0.57 Score=41.06 Aligned_cols=100 Identities=20% Similarity=0.273 Sum_probs=62.8
Q ss_pred hcCCCCCCeEEEecCCc--cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAGGT--GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~--G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||-.|+|. |..+..++... .+.+++++|.+++.++.+++. +. . .
T Consensus 165 ~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~-----------------~Ga~Vi~~~~~~~~~~~~~~~----g~---~-~ 219 (347)
T 1jvb_A 165 KASLDPTKTLLVVGAGGGLGTMAVQIAKAV-----------------SGATIIGVDVREEAVEAAKRA----GA---D-Y 219 (347)
T ss_dssp HTTCCTTCEEEEETTTSHHHHHHHHHHHHH-----------------TCCEEEEEESSHHHHHHHHHH----TC---S-E
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHHHc-----------------CCCeEEEEcCCHHHHHHHHHh----CC---C-E
Confidence 35567788999999973 55566666654 137899999999888777542 21 1 1
Q ss_pred EEEcccccC-----CCCC-CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 156 WVEGDAEAL-----CFED-STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 156 ~~~~d~~~~-----~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+...-.+. .... +.+|+++-+.. ....++...+.|+++|.++++..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 220 VINASMQDPLAEIRRITESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp EEETTTSCHHHHHHHHTTTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred EecCCCccHHHHHHHHhcCCCceEEEECCC------CHHHHHHHHHHHhcCCEEEEECC
Confidence 121111111 1111 47999885432 23467788999999999987543
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.29 E-value=2.7 Score=31.38 Aligned_cols=92 Identities=11% Similarity=0.034 Sum_probs=56.0
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..+|+=+|||. ++..+++.+.. .+.+++++|.+++.++.+++ ..+.++.+|..+
T Consensus 7 ~~~viIiG~G~--~G~~la~~L~~---------------~g~~v~vid~~~~~~~~~~~---------~g~~~i~gd~~~ 60 (140)
T 3fwz_A 7 CNHALLVGYGR--VGSLLGEKLLA---------------SDIPLVVIETSRTRVDELRE---------RGVRAVLGNAAN 60 (140)
T ss_dssp CSCEEEECCSH--HHHHHHHHHHH---------------TTCCEEEEESCHHHHHHHHH---------TTCEEEESCTTS
T ss_pred CCCEEEECcCH--HHHHHHHHHHH---------------CCCCEEEEECCHHHHHHHHH---------cCCCEEECCCCC
Confidence 35788888854 44444444321 24799999999988776654 246678888755
Q ss_pred CC----CCCCCeeEEEeccccccccCHH-HHHHHHHhhccCCcEEEE
Q 036563 164 LC----FEDSTMDGYTIAFGIRNVTHIE-KALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 164 ~~----~~~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i 205 (288)
.. ..-..+|++++...- +.. ..+....+.+.|+..++.
T Consensus 61 ~~~l~~a~i~~ad~vi~~~~~----~~~n~~~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 61 EEIMQLAHLECAKWLILTIPN----GYEAGEIVASARAKNPDIEIIA 103 (140)
T ss_dssp HHHHHHTTGGGCSEEEECCSC----HHHHHHHHHHHHHHCSSSEEEE
T ss_pred HHHHHhcCcccCCEEEEECCC----hHHHHHHHHHHHHHCCCCeEEE
Confidence 31 122468888764331 111 223445666778887765
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=92.20 E-value=0.98 Score=39.54 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=59.8
Q ss_pred CCCeEEEe-cCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 83 PGMKHLDV-AGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDi-G~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
++.+||=+ |+|. |..+..+++.. ++++++++.+++.++.+++. +. -..+..+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~------------------Ga~Vi~~~~~~~~~~~~~~l----Ga----~~vi~~~ 203 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY------------------GLRVITTASRNETIEWTKKM----GA----DIVLNHK 203 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT------------------TCEEEEECCSHHHHHHHHHH----TC----SEEECTT
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc------------------CCEEEEEeCCHHHHHHHHhc----CC----cEEEECC
Confidence 68899988 4553 77777777765 47999999999888877663 21 1112111
Q ss_pred --cc-cC-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 161 --AE-AL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 161 --~~-~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.. .+ ......+|+|+-.. .....+..+.+.|+++|.++.+
T Consensus 204 ~~~~~~~~~~~~~g~Dvv~d~~------g~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 204 ESLLNQFKTQGIELVDYVFCTF------NTDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp SCHHHHHHHHTCCCEEEEEESS------CHHHHHHHHHHHEEEEEEEEES
T ss_pred ccHHHHHHHhCCCCccEEEECC------CchHHHHHHHHHhccCCEEEEE
Confidence 10 00 11234699988432 2355678889999999999753
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=92.00 E-value=0.75 Score=40.19 Aligned_cols=94 Identities=21% Similarity=0.238 Sum_probs=62.3
Q ss_pred CCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 80 NPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
...++.+||-+|+|. |..+..+++.. +.+++++|.+++.++.+++. +.. ..+
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~------------------Ga~Vi~~~~~~~~~~~~~~l----Ga~----~~~- 213 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAM------------------GLNVVAVDIGDEKLELAKEL----GAD----LVV- 213 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHT------------------TCEEEEECSCHHHHHHHHHT----TCS----EEE-
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc------------------CCEEEEEeCCHHHHHHHHHC----CCC----EEe-
Confidence 566788999999964 77777777765 37999999999888877542 211 112
Q ss_pred cccccCC-------CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 159 GDAEALC-------FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 159 ~d~~~~~-------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
|..+.. .. +.+|+++-... ....++...+.|+++|+++++..
T Consensus 214 -d~~~~~~~~~~~~~~-~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 214 -NPLKEDAAKFMKEKV-GGVHAAVVTAV------SKPAFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp -CTTTSCHHHHHHHHH-SSEEEEEESSC------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred -cCCCccHHHHHHHHh-CCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEecc
Confidence 221110 01 36899875332 23467888999999999987543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=91.98 E-value=0.19 Score=43.42 Aligned_cols=55 Identities=18% Similarity=0.336 Sum_probs=40.1
Q ss_pred CceEEEEcccccC--CCCCCCeeEEEecccccccc--------------------CHHHHHHHHHhhccCCcEEEEE
Q 036563 152 KSLLWVEGDAEAL--CFEDSTMDGYTIAFGIRNVT--------------------HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 152 ~~v~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~~--------------------~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.+..++++|+.+. .+++++||+|+++....... ....+++++.++|+|||.+++.
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~ 96 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV 96 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3578899998763 24567899999988754221 1235678999999999999864
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.42 Score=42.16 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=57.0
Q ss_pred CeEEEecCCc-cHHH-HHHH-HhhhhhhhhhhhcccccccCCCce-EEEEeCChh---HHHHHHHHhhhcCCCCCceEEE
Q 036563 85 MKHLDVAGGT-GDVA-FRIL-DTVNSIKRRALQDVLEDDLQEETR-IYVCDINPN---MLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 85 ~~vLDiG~G~-G~~~-~~l~-~~~~~~~~~~~~~~~~~~~~~~~~-v~~~D~s~~---~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.+||-+|+|. |..+ ..++ +.. +.+ ++++|.+++ .++.+++. + ....
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~------------------Ga~~Vi~~~~~~~~~~~~~~~~~l----G-----a~~v 226 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDK------------------GYENLYCLGRRDRPDPTIDIIEEL----D-----ATYV 226 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTT------------------CCCEEEEEECCCSSCHHHHHHHHT----T-----CEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHc------------------CCcEEEEEeCCcccHHHHHHHHHc----C-----Cccc
Confidence 8999999864 6666 7777 654 355 999999887 77776542 2 1111
Q ss_pred Ec---ccccC-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 158 EG---DAEAL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 158 ~~---d~~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.. |..++ .. .+.+|+|+-... ....++.+.+.|+++|.++++..
T Consensus 227 ~~~~~~~~~i~~~-~gg~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 227 DSRQTPVEDVPDV-YEQMDFIYEATG------FPKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp ETTTSCGGGHHHH-SCCEEEEEECSC------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred CCCccCHHHHHHh-CCCCCEEEECCC------ChHHHHHHHHHHhcCCEEEEEeC
Confidence 11 11111 01 236999874322 23467888999999999987543
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=91.79 E-value=0.67 Score=40.88 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=62.5
Q ss_pred cCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 79 LNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
....++.+||-+|+|. |..+..+++..+ .+++++|.+++.++.+++. +. -.++
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~G------------------a~Vi~~~~~~~~~~~~~~l----Ga----~~v~ 228 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMG------------------AETYVISRSSRKREDAMKM----GA----DHYI 228 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHT------------------CEEEEEESSSTTHHHHHHH----TC----SEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC------------------CEEEEEcCCHHHHHHHHHc----CC----CEEE
Confidence 4567788999999864 777777777763 7899999999888877652 21 1222
Q ss_pred Ecccc-cC--CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 158 EGDAE-AL--CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 158 ~~d~~-~~--~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
...-. +. ... +.+|+|+-...-.. ...++.+.+.|+++|+++++.
T Consensus 229 ~~~~~~~~~~~~~-~~~D~vid~~g~~~----~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 229 ATLEEGDWGEKYF-DTFDLIVVCASSLT----DIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp EGGGTSCHHHHSC-SCEEEEEECCSCST----TCCTTTGGGGEEEEEEEEECC
T ss_pred cCcCchHHHHHhh-cCCCEEEECCCCCc----HHHHHHHHHHhcCCCEEEEec
Confidence 22111 11 111 46999985443200 123455788999999998643
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=91.67 E-value=1.4 Score=38.91 Aligned_cols=99 Identities=17% Similarity=0.095 Sum_probs=64.3
Q ss_pred hhcCCCCCCeEEEec-C-CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVA-G-GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG-~-G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||-.| + |.|..+..+++.. ++++++++.+++.++.+++. +. -
T Consensus 157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~------------------Ga~Vi~~~~~~~~~~~~~~~----Ga----~ 210 (362)
T 2c0c_A 157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKA------------------KCHVIGTCSSDEKSAFLKSL----GC----D 210 (362)
T ss_dssp HHTCCCTTCEEEETTTTBTTHHHHHHHHHHT------------------TCEEEEEESSHHHHHHHHHT----TC----S
T ss_pred HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhC------------------CCEEEEEECCHHHHHHHHHc----CC----c
Confidence 344567788999999 3 4588888888775 37899999998877776642 21 1
Q ss_pred EEEEcccccC-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 155 LWVEGDAEAL-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d~~~~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
..+..+-.++ ......+|+++-+.. . ..++.+.+.|+++|.++++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 211 RPINYKTEPVGTVLKQEYPEGVDVVYESVG-----G--AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp EEEETTTSCHHHHHHHHCTTCEEEEEECSC-----T--HHHHHHHHHEEEEEEEEECCC
T ss_pred EEEecCChhHHHHHHHhcCCCCCEEEECCC-----H--HHHHHHHHHHhcCCEEEEEeC
Confidence 1222211111 011246999985433 1 467888999999999987543
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=91.44 E-value=1.4 Score=38.48 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=63.4
Q ss_pred hhcCCCCCCeEEEecC--CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAG--GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+.....++.+||-.|+ |.|..+..++... ++++++++.+++.++.+++.+ +. .
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~------------------G~~V~~~~~~~~~~~~~~~~~---g~---~- 203 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMM------------------GCYVVGSAGSKEKVDLLKTKF---GF---D- 203 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT------------------TCEEEEEESSHHHHHHHHHTS---CC---S-
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHC------------------CCEEEEEeCCHHHHHHHHHHc---CC---c-
Confidence 4456678889999997 3467777777664 479999999988777665322 21 1
Q ss_pred EEEEc-ccccC-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 155 LWVEG-DAEAL-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 155 ~~~~~-d~~~~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
..+.. +..++ ......+|+++-+.. . ..+....+.|+++|+++++.
T Consensus 204 ~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g------~-~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 204 DAFNYKEESDLTAALKRCFPNGIDIYFENVG------G-KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp EEEETTSCSCSHHHHHHHCTTCEEEEEESSC------H-HHHHHHHTTEEEEEEEEECC
T ss_pred eEEecCCHHHHHHHHHHHhCCCCcEEEECCC------H-HHHHHHHHHHhcCCEEEEEc
Confidence 11211 11111 011246999985433 1 36888899999999998754
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.43 E-value=0.71 Score=40.44 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=62.5
Q ss_pred hcCCCCCCeEEEecC--CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAG--GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||-+|+ |.|..+..++... +.+++++|.+++.++.+++. +. . .
T Consensus 164 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~------------------Ga~V~~~~~~~~~~~~~~~~----g~---~-~ 217 (347)
T 2hcy_A 164 SANLMAGHWVAISGAAGGLGSLAVQYAKAM------------------GYRVLGIDGGEGKEELFRSI----GG---E-V 217 (347)
T ss_dssp TTTCCTTCEEEEETTTSHHHHHHHHHHHHT------------------TCEEEEEECSTTHHHHHHHT----TC---C-E
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHC------------------CCcEEEEcCCHHHHHHHHHc----CC---c-e
Confidence 335677889999998 3466666666664 47999999988877666542 21 1 1
Q ss_pred EEEcc-cccC-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 156 WVEGD-AEAL-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 156 ~~~~d-~~~~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+... ..++ ....+.+|+++.+.. ....++.+.+.|+++|+++++..
T Consensus 218 ~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 218 FIDFTKEKDIVGAVLKATDGGAHGVINVSV------SEAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp EEETTTCSCHHHHHHHHHTSCEEEEEECSS------CHHHHHHHTTSEEEEEEEEECCC
T ss_pred EEecCccHhHHHHHHHHhCCCCCEEEECCC------cHHHHHHHHHHHhcCCEEEEEeC
Confidence 22111 1111 011126999885443 23568888999999999987543
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.43 E-value=1.5 Score=37.86 Aligned_cols=96 Identities=17% Similarity=0.121 Sum_probs=59.3
Q ss_pred hhcCCCCCCeEEEec-CCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVA-GGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG-~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||=+| +|. |..+..+++..+ +++++++ ++..++.+++ .+..
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~G------------------a~vi~~~-~~~~~~~~~~----lGa~---- 198 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKG------------------TTVITTA-SKRNHAFLKA----LGAE---- 198 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTT------------------CEEEEEE-CHHHHHHHHH----HTCS----
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcC------------------CEEEEEe-ccchHHHHHH----cCCC----
Confidence 556677889999986 554 888888888763 7888887 4544555543 2321
Q ss_pred EEEEccccc-CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 155 LWVEGDAEA-LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 155 ~~~~~d~~~-~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..+..+-.+ +...-..+|+|+-.-. ... +....+.|+++|+++.+
T Consensus 199 ~~i~~~~~~~~~~~~~g~D~v~d~~g------~~~-~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 199 QCINYHEEDFLLAISTPVDAVIDLVG------GDV-GIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEEETTTSCHHHHCCSCEEEEEESSC------HHH-HHHHGGGEEEEEEEEEC
T ss_pred EEEeCCCcchhhhhccCCCEEEECCC------cHH-HHHHHHhccCCCEEEEe
Confidence 223222111 1111146999874322 233 37889999999999864
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.35 E-value=1.9 Score=37.54 Aligned_cols=96 Identities=19% Similarity=0.127 Sum_probs=62.7
Q ss_pred cCCCCCCeEEEecC--CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 79 LNPFPGMKHLDVAG--GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 79 l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
....++.+||-.|+ |.|..+..++... +.+++++|.+++.++.+++. +. . ..
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~------------------G~~Vi~~~~~~~~~~~~~~~----ga---~-~~ 215 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLF------------------GARVIATAGSEDKLRRAKAL----GA---D-ET 215 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHT------------------TCEEEEEESSHHHHHHHHHH----TC---S-EE
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHC------------------CCEEEEEeCCHHHHHHHHhc----CC---C-EE
Confidence 35667889999998 4577777777775 37999999999888777542 21 1 12
Q ss_pred EEcccccC-----C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 157 VEGDAEAL-----C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 157 ~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+...-.++ . .....+|+++-+.. . ..++.+.+.|+++|+++++.
T Consensus 216 ~d~~~~~~~~~~~~~~~~~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 216 VNYTHPDWPKEVRRLTGGKGADKVVDHTG-A------LYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp EETTSTTHHHHHHHHTTTTCEEEEEESSC-S------SSHHHHHHHEEEEEEEEESS
T ss_pred EcCCcccHHHHHHHHhCCCCceEEEECCC-H------HHHHHHHHhhccCCEEEEEe
Confidence 22111111 0 11236999986544 1 24677888999999998754
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.31 E-value=1.1 Score=38.67 Aligned_cols=98 Identities=14% Similarity=0.089 Sum_probs=62.0
Q ss_pred hcCCCCCCeEEEecC--CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAG--GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||-.|+ |.|..+..++... +++++++|.+++.++.+++. +. . .
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~------------------G~~V~~~~~~~~~~~~~~~~----g~---~-~ 188 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL------------------GAKLIGTVGTAQKAQSALKA----GA---W-Q 188 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHH------------------TCEEEEEESSHHHHHHHHHH----TC---S-E
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHc------------------CCEEEEEeCCHHHHHHHHHc----CC---C-E
Confidence 445677889999994 3466666666665 37999999998887777552 21 1 1
Q ss_pred EEEcccccC-----C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 156 WVEGDAEAL-----C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 156 ~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+..+-.+. . .....+|+++.+.. ...++.+.+.|+++|+++++..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 189 VINYREEDLVERLKEITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp EEETTTSCHHHHHHHHTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred EEECCCccHHHHHHHHhCCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence 222111111 0 11236999986543 2347778899999999987543
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.23 E-value=1.3 Score=38.89 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=61.8
Q ss_pred hhcCCCCCCeEEEecC--CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAG--GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||-.|+ |.|..+..++... ++++++++.+++.++.+++. +. .
T Consensus 164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~------------------Ga~Vi~~~~~~~~~~~~~~~----ga---~- 217 (351)
T 1yb5_A 164 HSACVKAGESVLVHGASGGVGLAACQIARAY------------------GLKILGTAGTEEGQKIVLQN----GA---H- 217 (351)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHT------------------TCEEEEEESSHHHHHHHHHT----TC---S-
T ss_pred HhhCCCCcCEEEEECCCChHHHHHHHHHHHC------------------CCEEEEEeCChhHHHHHHHc----CC---C-
Confidence 3455677889999997 3466666666664 47999999998877765432 21 1
Q ss_pred EEEEcccccC------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 155 LWVEGDAEAL------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 155 ~~~~~d~~~~------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
..+..+-.+. ......+|+++-+.. ...+....+.|+++|+++++.
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G-------~~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 218 EVFNHREVNYIDKIKKYVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp EEEETTSTTHHHHHHHHHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred EEEeCCCchHHHHHHHHcCCCCcEEEEECCC-------hHHHHHHHHhccCCCEEEEEe
Confidence 1222111111 011236999985443 135677889999999998754
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=1.9 Score=37.53 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=62.5
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
......++.+||=+|+|+ |..+..+++.. ...+|+++|.+++.++.+++.-.. .-+.
T Consensus 157 ~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~-----------------~g~~Vi~~~~~~~r~~~~~~~Ga~-----~~i~ 214 (348)
T 4eez_A 157 KVSGVKPGDWQVIFGAGGLGNLAIQYAKNV-----------------FGAKVIAVDINQDKLNLAKKIGAD-----VTIN 214 (348)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-----------------SCCEEEEEESCHHHHHHHHHTTCS-----EEEE
T ss_pred cccCCCCCCEEEEEcCCCccHHHHHHHHHh-----------------CCCEEEEEECcHHHhhhhhhcCCe-----EEEe
Confidence 344567788999999987 45555555554 258999999999887766653211 0111
Q ss_pred EEEccccc-C-C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 156 WVEGDAEA-L-C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 156 ~~~~d~~~-~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+...|..+ . . .....+|.++.... ....+....+.|+++|.+++...
T Consensus 215 ~~~~~~~~~v~~~t~g~g~d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 215 SGDVNPVDEIKKITGGLGVQSAIVCAV------ARIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp C-CCCHHHHHHHHTTSSCEEEEEECCS------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCCCCHHHHhhhhcCCCCceEEEEecc------CcchhheeheeecCCceEEEEec
Confidence 12222111 1 0 12234676664322 24567888999999999987543
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.04 E-value=1 Score=39.54 Aligned_cols=99 Identities=12% Similarity=0.107 Sum_probs=63.6
Q ss_pred hhcCCCCCCeEEEecC-C-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAG-G-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
+.....++.+||-.|+ | .|..+..+++.. +++++++|.+++.++.+++. +. .
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~------------------Ga~Vi~~~~~~~~~~~~~~l----Ga----~ 214 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAF------------------GAEVYATAGSTGKCEACERL----GA----K 214 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHT------------------TCEEEEEESSHHHHHHHHHH----TC----S
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc------------------CCEEEEEeCCHHHHHHHHhc----CC----C
Confidence 4456678889999853 3 477777777765 47999999999888877653 21 1
Q ss_pred EEEEcccccC-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 155 LWVEGDAEAL-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d~~~~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
..+..+-.++ ......+|+++-+..- ..+....+.|+++|.++++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 215 RGINYRSEDFAAVIKAETGQGVDIILDMIGA-------AYFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp EEEETTTSCHHHHHHHHHSSCEEEEEESCCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred EEEeCCchHHHHHHHHHhCCCceEEEECCCH-------HHHHHHHHHhccCCEEEEEEe
Confidence 1222211111 0113469999864431 246778899999999987543
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=90.97 E-value=1.8 Score=37.32 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=59.5
Q ss_pred eEEEecC-C-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc-ccc
Q 036563 86 KHLDVAG-G-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG-DAE 162 (288)
Q Consensus 86 ~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~-d~~ 162 (288)
+||=.|+ | .|..+..+++..+ +++++++.+++.++.+++. +.. ..+.. +..
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~G------------------a~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~~~~ 202 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLG------------------YQVAAVSGRESTHGYLKSL----GAN----RILSRDEFA 202 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTT------------------CCEEEEESCGGGHHHHHHH----TCS----EEEEGGGSS
T ss_pred eEEEECCCcHHHHHHHHHHHHcC------------------CEEEEEeCCHHHHHHHHhc----CCC----EEEecCCHH
Confidence 4998887 4 4888888888763 7999999999988888653 211 11211 111
Q ss_pred cC-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 163 AL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 163 ~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.. ....+.+|+++-.. . ...+..+.+.|+++|+++++..
T Consensus 203 ~~~~~~~~~~d~v~d~~-----g--~~~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 203 ESRPLEKQLWAGAIDTV-----G--DKVLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp CCCSSCCCCEEEEEESS-----C--HHHHHHHHHTEEEEEEEEECCC
T ss_pred HHHhhcCCCccEEEECC-----C--cHHHHHHHHHHhcCCEEEEEec
Confidence 11 12235699876432 1 1278889999999999987543
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.46 Score=41.82 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=54.2
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
.+++|+-||.|.+...+.+..- ....+.++|+++...+.-+.+.. ...+..+|+.++
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~----------------~~~~v~a~e~d~~a~~ty~~N~~-------~~~~~~~DI~~~ 60 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGL----------------DGEIVAAVDINTVANSVYKHNFP-------ETNLLNRNIQQL 60 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTC----------------SEEEEEEECCCHHHHHHHHHHCT-------TSCEECCCGGGC
T ss_pred CEEEEECcCccHHHHHHHHcCC----------------CceEEEEEeCCHHHHHHHHHhCC-------CCceeccccccC
Confidence 5899999999999988876520 11457899999998887777653 344667888776
Q ss_pred C---CCCCCeeEEEeccccccc
Q 036563 165 C---FEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 165 ~---~~~~~~D~v~~~~~l~~~ 183 (288)
. ++...+|+++.....+.+
T Consensus 61 ~~~~~~~~~~D~l~ggpPCQ~f 82 (333)
T 4h0n_A 61 TPQVIKKWNVDTILMSPPCQPF 82 (333)
T ss_dssp CHHHHHHTTCCEEEECCCCCCS
T ss_pred CHHHhccCCCCEEEecCCCcch
Confidence 3 222358999987765544
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=90.25 E-value=2.2 Score=38.96 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=62.6
Q ss_pred cCCCCCCeEEEecC-C-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 79 LNPFPGMKHLDVAG-G-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 79 l~~~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
....++.+||=+|+ | .|..+..+++.. ++++++++.+++.++.+++. +.. .+
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~------------------Ga~vi~~~~~~~~~~~~~~l----Ga~----~v 277 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAG------------------GANPICVVSSPQKAEICRAM----GAE----AI 277 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT------------------TCEEEEEESSHHHHHHHHHH----TCC----EE
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc------------------CCeEEEEECCHHHHHHHHhh----CCc----EE
Confidence 45678889999997 4 377888888775 47889999888888877553 211 12
Q ss_pred EEcccc---------------------cC-C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 157 VEGDAE---------------------AL-C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 157 ~~~d~~---------------------~~-~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+...-. .+ . .....+|+|+-... . ..+....+.|+++|.++++.
T Consensus 278 i~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G------~-~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 278 IDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPG------R-ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp EETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSC------H-HHHHHHHHHEEEEEEEEESC
T ss_pred EecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCC------c-hhHHHHHHHhhCCcEEEEEe
Confidence 211110 00 0 11246999874322 2 56788899999999998754
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=90.18 E-value=0.67 Score=40.86 Aligned_cols=99 Identities=16% Similarity=0.226 Sum_probs=60.4
Q ss_pred cCCC-CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 79 LNPF-PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 79 l~~~-~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
.... ++.+||=+|+|. |..+..+++..+ ++++++|.+++.++.+++.+ +.. .+
T Consensus 175 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~G------------------a~Vi~~~~~~~~~~~~~~~l---Ga~----~v 229 (357)
T 2cf5_A 175 FGLKQPGLRGGILGLGGVGHMGVKIAKAMG------------------HHVTVISSSNKKREEALQDL---GAD----DY 229 (357)
T ss_dssp TSTTSTTCEEEEECCSHHHHHHHHHHHHHT------------------CEEEEEESSTTHHHHHHTTS---CCS----CE
T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHCC------------------CeEEEEeCChHHHHHHHHHc---CCc----ee
Confidence 4455 788999999874 777777777753 78999999988776665322 211 11
Q ss_pred EEc-ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 157 VEG-DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 157 ~~~-d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+.. +........+.+|+|+-...-. ..+....+.|+++|+++.+..
T Consensus 230 i~~~~~~~~~~~~~g~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 230 VIGSDQAKMSELADSLDYVIDTVPVH------HALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp EETTCHHHHHHSTTTEEEEEECCCSC------CCSHHHHTTEEEEEEEEECSC
T ss_pred eccccHHHHHHhcCCCCEEEECCCCh------HHHHHHHHHhccCCEEEEeCC
Confidence 211 1111110123699998543211 124556789999999987543
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=89.94 E-value=1.1 Score=40.79 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=38.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
..+|+|+|+|+|.++..+++...... +...+++.+|+|+...+.-++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~------------~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALG------------VELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTT------------CCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcC------------CCCceEEEEEcCHHHHHHHHHHHhc
Confidence 36899999999999999988763100 0124899999999887766666643
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.89 E-value=1.2 Score=38.31 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=52.9
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCce-EEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETR-IYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
....+++|+-||.|.++..+.+..- ... +.++|+++...+.-+.+. +...+..+|
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~-----------------~~~~v~a~E~d~~a~~ty~~N~-------~~~~~~~~D 69 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGI-----------------QVDRYIASEVCEDSITVGMVRH-------QGKIMYVGD 69 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTB-----------------CEEEEEEECCCHHHHHHHHHHT-------TTCEEEECC
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCC-----------------ccceEEEEECCHHHHHHHHHhC-------CCCceeCCC
Confidence 3456899999999999988776531 122 689999999887666654 234577889
Q ss_pred cccCC---CC-CCCeeEEEecccc
Q 036563 161 AEALC---FE-DSTMDGYTIAFGI 180 (288)
Q Consensus 161 ~~~~~---~~-~~~~D~v~~~~~l 180 (288)
+.++. ++ ...+|+++.....
T Consensus 70 I~~i~~~~i~~~~~~Dll~ggpPC 93 (295)
T 2qrv_A 70 VRSVTQKHIQEWGPFDLVIGGSPC 93 (295)
T ss_dssp GGGCCHHHHHHTCCCSEEEECCCC
T ss_pred hHHccHHHhcccCCcCEEEecCCC
Confidence 88763 11 1368999986643
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=89.77 E-value=2.2 Score=37.35 Aligned_cols=99 Identities=18% Similarity=0.112 Sum_probs=61.7
Q ss_pred hhcCCCCCCeEEEecC--CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAG--GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||-.|+ |.|..+..++... +++++++|.+++.++.+++. +. .
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~------------------Ga~Vi~~~~~~~~~~~~~~~----g~---~- 209 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMA------------------GAIPLVTAGSQKKLQMAEKL----GA---A- 209 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT------------------TCEEEEEESCHHHHHHHHHH----TC---S-
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHc------------------CCEEEEEeCCHHHHHHHHHc----CC---c-
Confidence 3455677889999984 3466666666664 47999999999888777432 21 1
Q ss_pred EEEEcccccC-----C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 155 LWVEGDAEAL-----C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 155 ~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
..+..+-.+. . .....+|+++-+..- ..+....+.|+++|.++++..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~-------~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 210 AGFNYKKEDFSEATLKFTKGAGVNLILDCIGG-------SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp EEEETTTSCHHHHHHHHTTTSCEEEEEESSCG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred EEEecCChHHHHHHHHHhcCCCceEEEECCCc-------hHHHHHHHhccCCCEEEEEec
Confidence 1122111111 0 122369999855432 146677899999999987543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=89.69 E-value=1.1 Score=39.66 Aligned_cols=99 Identities=20% Similarity=0.256 Sum_probs=59.8
Q ss_pred cCCC-CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 79 LNPF-PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 79 l~~~-~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
.... ++.+||=+|+|. |..+..+++.. +.++++++.+++.++.+++.+ +. ..+
T Consensus 182 ~~~~~~g~~VlV~GaG~vG~~~~q~a~~~------------------Ga~Vi~~~~~~~~~~~~~~~l---Ga----~~v 236 (366)
T 1yqd_A 182 FGLDEPGKHIGIVGLGGLGHVAVKFAKAF------------------GSKVTVISTSPSKKEEALKNF---GA----DSF 236 (366)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHT------------------TCEEEEEESCGGGHHHHHHTS---CC----SEE
T ss_pred cCcCCCCCEEEEECCCHHHHHHHHHHHHC------------------CCEEEEEeCCHHHHHHHHHhc---CC----ceE
Confidence 4455 788999999864 66666666665 378999999988777665332 21 112
Q ss_pred EEc-ccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 157 VEG-DAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 157 ~~~-d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+.. +...+....+.+|+|+-..... ..++...+.|+++|.++.+..
T Consensus 237 ~~~~~~~~~~~~~~~~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 237 LVSRDQEQMQAAAGTLDGIIDTVSAV------HPLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp EETTCHHHHHHTTTCEEEEEECCSSC------CCSHHHHHHEEEEEEEEECCC
T ss_pred EeccCHHHHHHhhCCCCEEEECCCcH------HHHHHHHHHHhcCCEEEEEcc
Confidence 211 1111110113699998544321 124456788999999987543
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.68 E-value=0.34 Score=42.37 Aligned_cols=55 Identities=15% Similarity=0.050 Sum_probs=41.1
Q ss_pred CceEEEEccccc-CC-CCCCCeeEEEecccccccc--------------CHHHHHHHHHhhccCCcEEEEE
Q 036563 152 KSLLWVEGDAEA-LC-FEDSTMDGYTIAFGIRNVT--------------HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 152 ~~v~~~~~d~~~-~~-~~~~~~D~v~~~~~l~~~~--------------~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
....++++|... +. ++++++|+|++........ .....+.++.++|+|||.+++.
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~ 83 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 83 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence 457788898764 32 5577899999987653321 2467889999999999999874
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=89.63 E-value=2.2 Score=37.31 Aligned_cols=99 Identities=11% Similarity=0.020 Sum_probs=61.9
Q ss_pred hhcCCCCC--CeEEEecCC--ccHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 77 SKLNPFPG--MKHLDVAGG--TGDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 77 ~~l~~~~~--~~vLDiG~G--~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
......++ .+||-.|++ .|..+..++... ++ +++++|.+++.++.+++.+ +.
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~------------------Ga~~Vi~~~~~~~~~~~~~~~~---g~-- 208 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFL------------------GCSRVVGICGTHEKCILLTSEL---GF-- 208 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHT------------------TCSEEEEEESCHHHHHHHHHTS---CC--
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHC------------------CCCeEEEEeCCHHHHHHHHHHc---CC--
Confidence 45566778 899999983 356666666654 36 9999999887776665422 21
Q ss_pred CceEEEEcccccC-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 152 KSLLWVEGDAEAL-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 152 ~~v~~~~~d~~~~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
. ..+..+-.+. ....+.+|+++-+.. ...+..+.+.|+++|+++++.
T Consensus 209 -~-~~~d~~~~~~~~~~~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 209 -D-AAINYKKDNVAEQLRESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILCG 260 (357)
T ss_dssp -S-EEEETTTSCHHHHHHHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred -c-eEEecCchHHHHHHHHhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEEC
Confidence 1 1222111111 011226999885443 256788899999999998754
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=89.59 E-value=2.1 Score=37.07 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=62.5
Q ss_pred hcCCCCCCeEEEecC--CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAG--GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.....++.+||-.|+ |.|..+..++... +++++++|.+++.++.+++. +. . .
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~------------------G~~Vi~~~~~~~~~~~~~~~----g~---~-~ 193 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHL------------------GATVIGTVSTEEKAETARKL----GC---H-H 193 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHT------------------TCEEEEEESSHHHHHHHHHH----TC---S-E
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHC------------------CCEEEEEeCCHHHHHHHHHc----CC---C-E
Confidence 445677889999995 4577777777765 47999999998877776542 21 1 1
Q ss_pred EEEcccccC-----C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 156 WVEGDAEAL-----C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 156 ~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+..+-.+. . .....+|+++-+..- ..++.+.+.|+++|.++++..
T Consensus 194 ~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 194 TINYSTQDFAEVVREITGGKGVDVVYDSIGK-------DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp EEETTTSCHHHHHHHHHTTCCEEEEEECSCT-------TTHHHHHHTEEEEEEEEECCC
T ss_pred EEECCCHHHHHHHHHHhCCCCCeEEEECCcH-------HHHHHHHHhhccCCEEEEEec
Confidence 122111111 0 112369999854431 347778899999999987543
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=89.30 E-value=0.14 Score=44.99 Aligned_cols=97 Identities=23% Similarity=0.199 Sum_probs=61.0
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
.... ++.+||-+|+|. |..+..+++.. +. +++++|.+++.++.+++. . ..
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~------------------Ga~~Vi~~~~~~~~~~~~~~l-a------~~-- 211 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRAS------------------GAGPILVSDPNPYRLAFARPY-A------DR-- 211 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHT------------------TCCSEEEECSCHHHHGGGTTT-C------SE--
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHc------------------CCCEEEEECCCHHHHHHHHHh-H------Hh--
Confidence 4455 788999999864 67777777765 36 899999988776655432 1 11
Q ss_pred EEEcccccC-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 156 WVEGDAEAL-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 156 ~~~~d~~~~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+..+-.++ ......+|+|+-... ....++...+.|+++|+++++..
T Consensus 212 v~~~~~~~~~~~~~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 212 LVNPLEEDLLEVVRRVTGSGVEVLLEFSG------NEAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp EECTTTSCHHHHHHHHHSSCEEEEEECSC------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred ccCcCccCHHHHHHHhcCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 111110111 001236999974332 23467888999999999987543
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=88.94 E-value=1.4 Score=38.11 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=52.5
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
++|||+-||.|.++.-+.+.. -..+.++|+++.+.+.-+.+.. -.++.+|+.++
T Consensus 1 mkvidLFsG~GG~~~G~~~aG------------------~~~v~a~e~d~~a~~ty~~N~~--------~~~~~~DI~~i 54 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAG------------------FRIICANEYDKSIWKTYESNHS--------AKLIKGDISKI 54 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTT------------------CEEEEEEECCTTTHHHHHHHCC--------SEEEESCGGGC
T ss_pred CeEEEeCcCccHHHHHHHHCC------------------CEEEEEEeCCHHHHHHHHHHCC--------CCcccCChhhC
Confidence 479999999999988776652 2457799999998887776642 35677898876
Q ss_pred CC-CCCCeeEEEeccccccc
Q 036563 165 CF-EDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 165 ~~-~~~~~D~v~~~~~l~~~ 183 (288)
.. .-...|+++.....+.+
T Consensus 55 ~~~~~~~~D~l~ggpPCQ~f 74 (331)
T 3ubt_Y 55 SSDEFPKCDGIIGGPPSQSW 74 (331)
T ss_dssp CGGGSCCCSEEECCCCGGGT
T ss_pred CHhhCCcccEEEecCCCCCc
Confidence 32 11358999887764433
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=88.84 E-value=0.7 Score=38.90 Aligned_cols=53 Identities=8% Similarity=-0.001 Sum_probs=35.7
Q ss_pred eEEEEcccccC--CCCCCCeeEEEeccccccc-c-------------CHHHHHHHHHhhccCCcEEEEE
Q 036563 154 LLWVEGDAEAL--CFEDSTMDGYTIAFGIRNV-T-------------HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 154 v~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~-~-------------~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..++++|+... .++++++|+|++......- . -....+.++.++|+|+|.+++.
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 35667776432 2445689999987764322 1 1355788899999999999863
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=88.63 E-value=2.6 Score=37.10 Aligned_cols=92 Identities=15% Similarity=0.104 Sum_probs=56.3
Q ss_pred CCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCCh---hHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 84 GMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINP---NMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 84 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~---~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
+.+||-+|+|. |..+..+++.. +++++++|.++ +.++.+++. + ......
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~------------------Ga~Vi~~~~~~~~~~~~~~~~~~----g-----a~~v~~ 233 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY------------------GLEVWMANRREPTEVEQTVIEET----K-----TNYYNS 233 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH------------------TCEEEEEESSCCCHHHHHHHHHH----T-----CEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------------------CCEEEEEeCCccchHHHHHHHHh----C-----Cceech
Confidence 78999999853 55666666655 37999999987 666666532 2 111211
Q ss_pred c-cc-cCCCCCCCeeEEEeccccccccCHHHHH-HHHHhhccCCcEEEEEec
Q 036563 160 D-AE-ALCFEDSTMDGYTIAFGIRNVTHIEKAL-AEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 160 d-~~-~~~~~~~~~D~v~~~~~l~~~~~~~~~l-~~~~~~L~pgG~l~i~~~ 208 (288)
+ +. .+......+|+++-+... ...+ +.+.+.|+++|.++++..
T Consensus 234 ~~~~~~~~~~~~~~d~vid~~g~------~~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 234 SNGYDKLKDSVGKFDVIIDATGA------DVNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp TTCSHHHHHHHCCEEEEEECCCC------CTHHHHHHGGGEEEEEEEEECSC
T ss_pred HHHHHHHHHhCCCCCEEEECCCC------hHHHHHHHHHHHhcCCEEEEEec
Confidence 1 10 000011469999854432 1245 788999999999987544
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=88.34 E-value=0.77 Score=39.31 Aligned_cols=93 Identities=20% Similarity=0.213 Sum_probs=59.5
Q ss_pred CCCCCeEEEecC-C-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 81 PFPGMKHLDVAG-G-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 81 ~~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
..++.+||-+|+ | .|..+..+++.. ++++++++.+++.++.+++. +.. ..+.
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~------------------Ga~Vi~~~~~~~~~~~~~~~----ga~----~~~~ 176 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM------------------GLRVLAAASRPEKLALPLAL----GAE----EAAT 176 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT------------------TCEEEEEESSGGGSHHHHHT----TCS----EEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC------------------CCEEEEEeCCHHHHHHHHhc----CCC----EEEE
Confidence 567889999998 3 477777777775 37999999988887777542 211 1222
Q ss_pred ccc-ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 159 GDA-EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 159 ~d~-~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.+- .++...-..+|+++- .. . ..++...+.|+++|+++++.
T Consensus 177 ~~~~~~~~~~~~~~d~vid-~g-----~--~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 177 YAEVPERAKAWGGLDLVLE-VR-----G--KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp GGGHHHHHHHTTSEEEEEE-CS-----C--TTHHHHHTTEEEEEEEEEC-
T ss_pred CCcchhHHHHhcCceEEEE-CC-----H--HHHHHHHHhhccCCEEEEEe
Confidence 111 111000046999985 32 1 24677889999999988643
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=87.95 E-value=6.5 Score=28.98 Aligned_cols=92 Identities=7% Similarity=0.095 Sum_probs=54.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..+|+=+|+| .++..+++.+.. .+.+++++|.+++.++.++. ....++.+|..+
T Consensus 6 ~~~v~I~G~G--~iG~~la~~L~~---------------~g~~V~~id~~~~~~~~~~~---------~~~~~~~gd~~~ 59 (141)
T 3llv_A 6 RYEYIVIGSE--AAGVGLVRELTA---------------AGKKVLAVDKSKEKIELLED---------EGFDAVIADPTD 59 (141)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHH---------------TTCCEEEEESCHHHHHHHHH---------TTCEEEECCTTC
T ss_pred CCEEEEECCC--HHHHHHHHHHHH---------------CCCeEEEEECCHHHHHHHHH---------CCCcEEECCCCC
Confidence 3578889885 466666665431 24789999999987766553 235677788765
Q ss_pred CC----CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 164 LC----FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 164 ~~----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
.. ..-..+|.+++... . ......+....+.+. ...++.
T Consensus 60 ~~~l~~~~~~~~d~vi~~~~--~-~~~n~~~~~~a~~~~-~~~iia 101 (141)
T 3llv_A 60 ESFYRSLDLEGVSAVLITGS--D-DEFNLKILKALRSVS-DVYAIV 101 (141)
T ss_dssp HHHHHHSCCTTCSEEEECCS--C-HHHHHHHHHHHHHHC-CCCEEE
T ss_pred HHHHHhCCcccCCEEEEecC--C-HHHHHHHHHHHHHhC-CceEEE
Confidence 31 12346898876443 1 111222333444455 555554
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=87.10 E-value=3.4 Score=35.97 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=61.5
Q ss_pred hhcCCCCCCeEEEecC-C-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAG-G-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||-+|+ | .|..+..+++.. +++++++ .+++.++.+++. +.
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~------------------Ga~Vi~~-~~~~~~~~~~~l----Ga----- 195 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALAR------------------GARVFAT-ARGSDLEYVRDL----GA----- 195 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHT------------------TCEEEEE-ECHHHHHHHHHH----TS-----
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHC------------------CCEEEEE-eCHHHHHHHHHc----CC-----
Confidence 5556678899999994 4 477877787775 4789999 788777766543 21
Q ss_pred EEEEcccccCC------CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 155 LWVEGDAEALC------FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 155 ~~~~~d~~~~~------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..+. +-.++. .....+|+|+-+.. . ..+....+.|+++|.++++
T Consensus 196 ~~i~-~~~~~~~~~~~~~~~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 196 TPID-ASREPEDYAAEHTAGQGFDLVYDTLG-----G--PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp EEEE-TTSCHHHHHHHHHTTSCEEEEEESSC-----T--HHHHHHHHHEEEEEEEEES
T ss_pred CEec-cCCCHHHHHHHHhcCCCceEEEECCC-----c--HHHHHHHHHHhcCCeEEEE
Confidence 1122 211110 12246999875332 1 4677888999999999864
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=86.99 E-value=1.2 Score=41.28 Aligned_cols=78 Identities=10% Similarity=0.132 Sum_probs=53.8
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..+++|+-||.|.++.-+.+.. ...+.++|+++...+.-+.+.... +...++.+|+.+
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG------------------~~~v~avE~d~~A~~ty~~N~~~~----p~~~~~~~DI~~ 145 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIG------------------GQCVFTSEWNKHAVRTYKANHYCD----PATHHFNEDIRD 145 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTT------------------EEEEEEECCCHHHHHHHHHHSCCC----TTTCEEESCTHH
T ss_pred cceEEEecCCccHHHHHHHHCC------------------CEEEEEEeCCHHHHHHHHHhcccC----CCcceeccchhh
Confidence 3589999999999998886652 145789999998887776665221 344567788765
Q ss_pred CCC-----------------CCCCeeEEEeccccccc
Q 036563 164 LCF-----------------EDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 164 ~~~-----------------~~~~~D~v~~~~~l~~~ 183 (288)
+.. ....+|+++.....+.+
T Consensus 146 i~~~~~~~~~~~~~~~~i~~~~~~~Dvl~gGpPCQ~F 182 (482)
T 3me5_A 146 ITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPF 182 (482)
T ss_dssp HHCTTCTTSCHHHHHHHHHHHSCCCSEEEEECCCCCC
T ss_pred hhhccccccchhhHHhhhhhcCCCCCEEEecCCCcch
Confidence 431 11358999987765544
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.07 E-value=8.3 Score=31.77 Aligned_cols=108 Identities=16% Similarity=0.114 Sum_probs=66.6
Q ss_pred CCCCeEEEecCC-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 82 FPGMKHLDVAGG-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
.++++||=.|++ +|.++..+++.+.. .+.+++.++.+....+..++..... +++.++.+|
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~---------------~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~D 72 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKR---------------EGAELAFTYVGDRFKDRITEFAAEF----GSELVFPCD 72 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHH---------------TTCEEEEEESSGGGHHHHHHHHHHT----TCCCEEECC
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHH---------------cCCCEEEEecchhhHHHHHHHHHHc----CCcEEEECC
Confidence 456788888874 35566666665531 3578999998866555555444443 357888899
Q ss_pred cccCC----------CCCCCeeEEEeccccccc----------cC---H-----------HHHHHHHHhhccCCcEEEEE
Q 036563 161 AEALC----------FEDSTMDGYTIAFGIRNV----------TH---I-----------EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 161 ~~~~~----------~~~~~~D~v~~~~~l~~~----------~~---~-----------~~~l~~~~~~L~pgG~l~i~ 206 (288)
+.+.. ..-+..|+++.+..+... .+ . ..+++.+.+.++++|.++.+
T Consensus 73 v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 152 (271)
T 3ek2_A 73 VADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTL 152 (271)
T ss_dssp TTCHHHHHHHHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEE
Confidence 87642 011368999877654321 11 1 22456667777778888765
Q ss_pred ec
Q 036563 207 EL 208 (288)
Q Consensus 207 ~~ 208 (288)
..
T Consensus 153 sS 154 (271)
T 3ek2_A 153 SY 154 (271)
T ss_dssp EC
T ss_pred ec
Confidence 43
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=86.06 E-value=13 Score=30.68 Aligned_cols=94 Identities=11% Similarity=-0.089 Sum_probs=60.1
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
++||=.|+ |.++..+++.+.. .+.+|++++.++........ .+++++.+|+.++
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~---------------~g~~V~~~~r~~~~~~~~~~---------~~~~~~~~D~~d~ 59 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAP---------------QGWRIIGTSRNPDQMEAIRA---------SGAEPLLWPGEEP 59 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGG---------------GTCEEEEEESCGGGHHHHHH---------TTEEEEESSSSCC
T ss_pred CcEEEECC--cHHHHHHHHHHHH---------------CCCEEEEEEcChhhhhhHhh---------CCCeEEEeccccc
Confidence 58999994 9999999888631 34789999988865543322 3688999998876
Q ss_pred CCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEE
Q 036563 165 CFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 165 ~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~ 206 (288)
. -..+|.|+.........+. ..+++.+.+.-..-+.++.+
T Consensus 60 ~--~~~~d~vi~~a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~ 101 (286)
T 3ius_A 60 S--LDGVTHLLISTAPDSGGDPVLAALGDQIAARAAQFRWVGYL 101 (286)
T ss_dssp C--CTTCCEEEECCCCBTTBCHHHHHHHHHHHHTGGGCSEEEEE
T ss_pred c--cCCCCEEEECCCccccccHHHHHHHHHHHhhcCCceEEEEe
Confidence 6 4568998876654433322 23344333321222455543
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=86.01 E-value=4.4 Score=34.91 Aligned_cols=97 Identities=20% Similarity=0.216 Sum_probs=61.4
Q ss_pred cCCCCCC-eEEEecC-C-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 79 LNPFPGM-KHLDVAG-G-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 79 l~~~~~~-~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
....++. +||-.|+ | .|..+..+++..+ +++++++.+++.++.+++. +.. .
T Consensus 145 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G------------------a~vi~~~~~~~~~~~~~~l----Ga~----~ 198 (330)
T 1tt7_A 145 NGLSPEKGSVLVTGATGGVGGIAVSMLNKRG------------------YDVVASTGNREAADYLKQL----GAS----E 198 (330)
T ss_dssp TTCCGGGCCEEEESTTSHHHHHHHHHHHHHT------------------CCEEEEESSSSTHHHHHHH----TCS----E
T ss_pred cCcCCCCceEEEECCCCHHHHHHHHHHHHCC------------------CEEEEEeCCHHHHHHHHHc----CCc----E
Confidence 3445564 8999997 4 4777777877763 7899999988877777642 211 1
Q ss_pred EEEc-cc--ccC-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 156 WVEG-DA--EAL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 156 ~~~~-d~--~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+.. +. ... ......+|+++-... . ..+....+.|+++|+++++..
T Consensus 199 v~~~~~~~~~~~~~~~~~~~d~vid~~g-----~--~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 199 VISREDVYDGTLKALSKQQWQGAVDPVG-----G--KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp EEEHHHHCSSCCCSSCCCCEEEEEESCC-----T--HHHHHHHTTEEEEEEEEECCC
T ss_pred EEECCCchHHHHHHhhcCCccEEEECCc-----H--HHHHHHHHhhcCCCEEEEEec
Confidence 1211 11 111 122346898874332 2 357888999999999987543
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=85.98 E-value=0.78 Score=40.69 Aligned_cols=99 Identities=13% Similarity=0.047 Sum_probs=55.6
Q ss_pred CCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 84 GMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 84 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
+.+|+=+|+|. |..+...+... +.+|+++|.+++.++.+++.... .+.....+..
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~------------------Ga~V~v~dr~~~r~~~~~~~~~~------~~~~~~~~~~ 222 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGL------------------GAQVQIFDINVERLSYLETLFGS------RVELLYSNSA 222 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------------------TCEEEEEESCHHHHHHHHHHHGG------GSEEEECCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------------------CCEEEEEeCCHHHHHHHHHhhCc------eeEeeeCCHH
Confidence 47899999964 55555555554 36999999999888777654322 2222222211
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++...-..+|+|+..........+.-+.+...+.+++||.++.+
T Consensus 223 ~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv 266 (361)
T 1pjc_A 223 EIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDV 266 (361)
T ss_dssp HHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEET
T ss_pred HHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEE
Confidence 11100125899986543322111111134456788999988753
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=85.64 E-value=5.7 Score=30.87 Aligned_cols=94 Identities=11% Similarity=0.090 Sum_probs=52.7
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCC-CceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQE-ETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
+.+|+=+|+| .++..+++.+.. . +.+|+++|.+++..+.+++ . .+..+.+|..
T Consensus 39 ~~~v~IiG~G--~~G~~~a~~L~~---------------~~g~~V~vid~~~~~~~~~~~----~-----g~~~~~gd~~ 92 (183)
T 3c85_A 39 HAQVLILGMG--RIGTGAYDELRA---------------RYGKISLGIEIREEAAQQHRS----E-----GRNVISGDAT 92 (183)
T ss_dssp TCSEEEECCS--HHHHHHHHHHHH---------------HHCSCEEEEESCHHHHHHHHH----T-----TCCEEECCTT
T ss_pred CCcEEEECCC--HHHHHHHHHHHh---------------ccCCeEEEEECCHHHHHHHHH----C-----CCCEEEcCCC
Confidence 5589888875 455555444321 2 3689999999987665543 1 3445666654
Q ss_pred cC----CC-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 163 AL----CF-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~----~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+. .. .-..+|+|++... . ......+-...+.+.|++.+++.
T Consensus 93 ~~~~l~~~~~~~~ad~vi~~~~--~-~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 93 DPDFWERILDTGHVKLVLLAMP--H-HQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp CHHHHHTBCSCCCCCEEEECCS--S-HHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CHHHHHhccCCCCCCEEEEeCC--C-hHHHHHHHHHHHHHCCCCEEEEE
Confidence 32 11 2345898886432 1 11122233345556777777753
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=85.57 E-value=0.6 Score=41.80 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=33.3
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHH
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKK 142 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~ 142 (288)
++.+|+=+|+|. |..+...+..++ .+|+++|.++..++.+++
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lG------------------a~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLG------------------AKTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHT------------------CEEEEECSSGGGHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC------------------CEEEEEeCCHHHHHHHHH
Confidence 567999999986 666666666653 799999999988877765
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=85.03 E-value=0.64 Score=41.52 Aligned_cols=100 Identities=17% Similarity=0.035 Sum_probs=54.5
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
++.+|+=+|+|. |......+... +.+|+++|.++..++.+++.... .+.....+.
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~------------------Ga~V~~~d~~~~~l~~~~~~~g~------~~~~~~~~~ 222 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGM------------------GATVTVLDINIDKLRQLDAEFCG------RIHTRYSSA 222 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT------------------TCEEEEEESCHHHHHHHHHHTTT------SSEEEECCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------------------CCEEEEEeCCHHHHHHHHHhcCC------eeEeccCCH
Confidence 567899999864 44444444443 37999999999887766553311 121111111
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.++...-...|+|+..........+.-+.++..+.++|||.++.+
T Consensus 223 ~~l~~~l~~aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~v 267 (377)
T 2vhw_A 223 YELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDI 267 (377)
T ss_dssp HHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEG
T ss_pred HHHHHHHcCCCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEE
Confidence 111100124799886432211111111234567788999988754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.60 E-value=18 Score=31.97 Aligned_cols=102 Identities=10% Similarity=0.058 Sum_probs=66.9
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.+||.++.+-|.++..+... .++.+.-|-......+.++..++++...+.+.... +
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~---------------------~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~-~ 95 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH---------------------KPYSIGDSYISELATRENLRLNGIDESSVKFLDST-A 95 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG---------------------CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETT-S
T ss_pred CCCCEEEECCCCCHHHHhhccC---------------------CceEEEhHHHHHHHHHHHHHHcCCCccceEecccc-c
Confidence 4568999999999998777543 22333325555566667777777753346655332 1
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.....+|+|+.... .........|..+...|++|+.+++.....
T Consensus 96 ---~~~~~~~~v~~~lp-k~~~~l~~~L~~l~~~l~~~~~i~~~g~~~ 139 (375)
T 4dcm_A 96 ---DYPQQPGVVLIKVP-KTLALLEQQLRALRKVVTSDTRIIAGAKAR 139 (375)
T ss_dssp ---CCCSSCSEEEEECC-SCHHHHHHHHHHHHTTCCTTSEEEEEEEGG
T ss_pred ---ccccCCCEEEEEcC-CCHHHHHHHHHHHHhhCCCCCEEEEEeccc
Confidence 22356999886443 233345667889999999999998765543
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.57 E-value=4.4 Score=35.71 Aligned_cols=94 Identities=13% Similarity=0.149 Sum_probs=56.7
Q ss_pred CCCCCeEEEec-CC-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 81 PFPGMKHLDVA-GG-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 81 ~~~~~~vLDiG-~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
..++.+||=.| +| .|..+..+++.. ++++++++ ++..++.+++ .+.. ..+.
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~------------------Ga~Vi~~~-~~~~~~~~~~----lGa~----~v~~ 233 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAW------------------DAHVTAVC-SQDASELVRK----LGAD----DVID 233 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHT------------------TCEEEEEE-CGGGHHHHHH----TTCS----EEEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhC------------------CCEEEEEe-ChHHHHHHHH----cCCC----EEEE
Confidence 56788999998 44 477777777775 37898888 6666665543 2211 1222
Q ss_pred cccccCC---CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 159 GDAEALC---FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 159 ~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.+-.++. .....+|+|+-... .....+....+.|+++|.++++
T Consensus 234 ~~~~~~~~~~~~~~g~D~vid~~g-----~~~~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 234 YKSGSVEEQLKSLKPFDFILDNVG-----GSTETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp TTSSCHHHHHHTSCCBSEEEESSC-----TTHHHHGGGGBCSSSCCEEEES
T ss_pred CCchHHHHHHhhcCCCCEEEECCC-----ChhhhhHHHHHhhcCCcEEEEe
Confidence 1111110 01135899874332 2223456778899999999864
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.14 E-value=4.3 Score=34.92 Aligned_cols=99 Identities=15% Similarity=0.120 Sum_probs=59.3
Q ss_pred cCCCCCC-eEEEecC-C-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 79 LNPFPGM-KHLDVAG-G-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 79 l~~~~~~-~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
....++. +||-+|+ | .|..+..+++.. ++++++++.+++.++.+++. +.. .-+.
T Consensus 144 ~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~------------------Ga~vi~~~~~~~~~~~~~~l----Ga~-~~i~ 200 (328)
T 1xa0_A 144 HGLTPERGPVLVTGATGGVGSLAVSMLAKR------------------GYTVEASTGKAAEHDYLRVL----GAK-EVLA 200 (328)
T ss_dssp TTCCGGGCCEEESSTTSHHHHHHHHHHHHT------------------TCCEEEEESCTTCHHHHHHT----TCS-EEEE
T ss_pred cCCCCCCceEEEecCCCHHHHHHHHHHHHC------------------CCEEEEEECCHHHHHHHHHc----CCc-EEEe
Confidence 3455564 8999997 3 477888888775 37899999988877777542 211 0011
Q ss_pred EEEcccccC-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 156 WVEGDAEAL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 156 ~~~~d~~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
....+.... ......+|+++-... . ..+....+.|+++|+++++.
T Consensus 201 ~~~~~~~~~~~~~~~~~d~vid~~g-----~--~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 201 REDVMAERIRPLDKQRWAAAVDPVG-----G--RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp CC---------CCSCCEEEEEECST-----T--TTHHHHHHTEEEEEEEEECS
T ss_pred cCCcHHHHHHHhcCCcccEEEECCc-----H--HHHHHHHHhhccCCEEEEEe
Confidence 111110001 112346999875432 1 24677889999999998754
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=84.01 E-value=5.1 Score=35.26 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=58.2
Q ss_pred CCCCeEEEecCC--ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGG--TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G--~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
.++.+||=+|++ .|..+..+++..+ ++++++. +++.++.+++. +. ..++..
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G------------------a~Vi~~~-~~~~~~~~~~l----Ga----~~vi~~ 215 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSG------------------YIPIATC-SPHNFDLAKSR----GA----EEVFDY 215 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTT------------------CEEEEEE-CGGGHHHHHHT----TC----SEEEET
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCC------------------CEEEEEe-CHHHHHHHHHc----CC----cEEEEC
Confidence 678899999983 5888888888763 7888875 77777766542 21 122322
Q ss_pred ccccC-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhc-cCCcEEEEEe
Q 036563 160 DAEAL-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVL-KRGGRFLCLE 207 (288)
Q Consensus 160 d~~~~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG~l~i~~ 207 (288)
.-.++ ....+.+|+|+-.-. ....+..+.+.| +++|+++++.
T Consensus 216 ~~~~~~~~v~~~t~g~~d~v~d~~g------~~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 216 RAPNLAQTIRTYTKNNLRYALDCIT------NVESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp TSTTHHHHHHHHTTTCCCEEEESSC------SHHHHHHHHHHSCTTCEEEEESS
T ss_pred CCchHHHHHHHHccCCccEEEECCC------chHHHHHHHHHhhcCCCEEEEEe
Confidence 11111 112335999873222 235577778888 6999998643
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=83.83 E-value=6.6 Score=35.48 Aligned_cols=99 Identities=13% Similarity=-0.013 Sum_probs=61.5
Q ss_pred cCCCCCCeEEEecC-C-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 79 LNPFPGMKHLDVAG-G-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 79 l~~~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
....++.+||=.|+ | .|..+..+++.. ++++++++.+++.++.+++. +.. .-+..
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~------------------Ga~vi~~~~~~~~~~~~~~l----Ga~-~~i~~ 272 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG------------------GGIPVAVVSSAQKEAAVRAL----GCD-LVINR 272 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT------------------TCEEEEEESSHHHHHHHHHT----TCC-CEEEH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc------------------CCEEEEEeCCHHHHHHHHhc----CCC-EEEec
Confidence 55678889999997 4 377777777765 48899999888887777542 221 11111
Q ss_pred EEccc-------------------ccC-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 157 VEGDA-------------------EAL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 157 ~~~d~-------------------~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
...|. ..+ ......+|+++-+.. . ..+....+.|+++|.++++.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G------~-~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 273 AELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTG------R-VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSC------H-HHHHHHHHHSCTTCEEEESC
T ss_pred ccccccccccccccccchhhhHHHHHHHHHhCCCceEEEECCC------c-hHHHHHHHHHhcCCEEEEEe
Confidence 11111 000 001246899875332 1 35778889999999998754
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=83.11 E-value=14 Score=31.59 Aligned_cols=81 Identities=11% Similarity=0.144 Sum_probs=53.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.+||=.|++. .++..+++.+.. .+.+|++++.++..++...+.+...+.. .++.++.+|+.
T Consensus 7 ~~k~vlVTGas~-gIG~~la~~l~~---------------~G~~Vv~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dl~ 69 (319)
T 3ioy_A 7 AGRTAFVTGGAN-GVGIGLVRQLLN---------------QGCKVAIADIRQDSIDKALATLEAEGSG-PEVMGVQLDVA 69 (319)
T ss_dssp TTCEEEEETTTS-THHHHHHHHHHH---------------TTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEECCTT
T ss_pred CCCEEEEcCCch-HHHHHHHHHHHH---------------CCCEEEEEECCHHHHHHHHHHHHhcCCC-CeEEEEECCCC
Confidence 355777777654 455555555421 3588999999998887776666554321 37888999987
Q ss_pred cCC-----C-----CCCCeeEEEecccc
Q 036563 163 ALC-----F-----EDSTMDGYTIAFGI 180 (288)
Q Consensus 163 ~~~-----~-----~~~~~D~v~~~~~l 180 (288)
+.. + .-+..|+++.+..+
T Consensus 70 ~~~~v~~~~~~~~~~~g~id~lv~nAg~ 97 (319)
T 3ioy_A 70 SREGFKMAADEVEARFGPVSILCNNAGV 97 (319)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEECCCC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 642 0 11468999887664
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.11 E-value=0.75 Score=41.55 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=33.3
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHH
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKK 142 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~ 142 (288)
++.+|+=+|+|. |..+..++... +++|+++|.++..++.+++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~l------------------Ga~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRL------------------GAVVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT------------------TCEEEEECSSTTHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC------------------CCEEEEEcCCHHHHHHHHH
Confidence 467999999986 66666666665 4899999999988777765
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=83.05 E-value=0.94 Score=40.25 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=52.5
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
++.+|+=+|+|. |......+... +.+|+++|.+++.++.+++.. + ..+.....+.
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~------------------Ga~V~~~d~~~~~~~~~~~~~---g---~~~~~~~~~~ 220 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGM------------------GAQVTILDVNHKRLQYLDDVF---G---GRVITLTATE 220 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT------------------TCEEEEEESCHHHHHHHHHHT---T---TSEEEEECCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------------------CCEEEEEECCHHHHHHHHHhc---C---ceEEEecCCH
Confidence 457899999853 33333334433 479999999998776665432 1 1222211121
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..+...-..+|+|+.+........+.-+.++..+.+++||.++.+
T Consensus 221 ~~l~~~~~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v 265 (369)
T 2eez_A 221 ANIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDV 265 (369)
T ss_dssp HHHHHHHHHCSEEEECCC-------CCSCHHHHTTSCTTCEEEEC
T ss_pred HHHHHHHhCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEE
Confidence 111100124799876544321111111245667888999988754
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=82.88 E-value=18 Score=29.71 Aligned_cols=77 Identities=12% Similarity=0.053 Sum_probs=52.6
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.++|=.|++. .++..+++.+.. .+.+|+.+|.++..++...+.+...+ .++.++.+|+.+
T Consensus 7 ~k~vlVTGas~-GIG~aia~~l~~---------------~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~ 67 (252)
T 3h7a_A 7 NATVAVIGAGD-YIGAEIAKKFAA---------------EGFTVFAGRRNGEKLAPLVAEIEAAG---GRIVARSLDARN 67 (252)
T ss_dssp SCEEEEECCSS-HHHHHHHHHHHH---------------TTCEEEEEESSGGGGHHHHHHHHHTT---CEEEEEECCTTC
T ss_pred CCEEEEECCCc-hHHHHHHHHHHH---------------CCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECcCCC
Confidence 45677777665 455555555421 35899999999988877777666553 578899999876
Q ss_pred CC----------CCCCCeeEEEecccc
Q 036563 164 LC----------FEDSTMDGYTIAFGI 180 (288)
Q Consensus 164 ~~----------~~~~~~D~v~~~~~l 180 (288)
.. .. +..|+++.+...
T Consensus 68 ~~~v~~~~~~~~~~-g~id~lv~nAg~ 93 (252)
T 3h7a_A 68 EDEVTAFLNAADAH-APLEVTIFNVGA 93 (252)
T ss_dssp HHHHHHHHHHHHHH-SCEEEEEECCCC
T ss_pred HHHHHHHHHHHHhh-CCceEEEECCCc
Confidence 42 11 478998877664
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=82.66 E-value=3.6 Score=31.91 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=65.4
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.........+ +-|||+|-|+|..=-++.+.+ |+.+++++|-.-.. .-.. .+ +
T Consensus 31 ~~a~~~v~~~~-GpVlElGLGNGRTydHLRe~~-----------------P~R~I~vfDR~~~~------hp~~--~P-~ 83 (174)
T 3iht_A 31 EHAIAQTAGLS-GPVYELGLGNGRTYHHLRQHV-----------------QGREIYVFERAVAS------HPDS--TP-P 83 (174)
T ss_dssp HHHHHHTTTCC-SCEEEECCTTCHHHHHHHHHC-----------------CSSCEEEEESSCCC------CGGG--CC-C
T ss_pred HHHHHHhcCCC-CceEEecCCCChhHHHHHHhC-----------------CCCcEEEEEeeecc------CCCC--CC-c
Confidence 44455555444 469999999999999999998 68999999952211 0000 11 3
Q ss_pred ceEEEEcccccC-CC----CCCCeeEEEeccccccccCHHH----HHHHHHhhccCCcEEEE
Q 036563 153 SLLWVEGDAEAL-CF----EDSTMDGYTIAFGIRNVTHIEK----ALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 153 ~v~~~~~d~~~~-~~----~~~~~D~v~~~~~l~~~~~~~~----~l~~~~~~L~pgG~l~i 205 (288)
.-.++.+|+.+. +. -..+.-++.+....++-..-.. +-.-+..+|.|||.++-
T Consensus 84 ~e~~ilGdi~~tL~~~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS 145 (174)
T 3iht_A 84 EAQLILGDIRETLPATLERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVS 145 (174)
T ss_dssp GGGEEESCHHHHHHHHHHHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred hHheecccHHHHHHHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 456788887653 21 1334566666555444322111 23356788999998873
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=82.61 E-value=14 Score=31.15 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=64.3
Q ss_pred CCCeEEEecCCcc-HHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGTG-DVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++++|=.|++.| .++..+++.+.. .+.+|+.++.++...+.+++..... .++.++.+|+
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~---------------~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dv 90 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAARE---------------AGAELAFTYQGDALKKRVEPLAEEL----GAFVAGHCDV 90 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHH---------------TTCEEEEEECSHHHHHHHHHHHHHH----TCEEEEECCT
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHH---------------CCCEEEEEcCCHHHHHHHHHHHHhc----CCceEEECCC
Confidence 4567888887643 344445444321 3478999998876555554444433 3578888998
Q ss_pred ccCC----------CCCCCeeEEEecccccc----------cc--CH-----------HHHHHHHHhhccCCcEEEEEec
Q 036563 162 EALC----------FEDSTMDGYTIAFGIRN----------VT--HI-----------EKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 162 ~~~~----------~~~~~~D~v~~~~~l~~----------~~--~~-----------~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+.. ..-+..|+++.+..+.. .+ +. ..+++.+.+.++++|.++.+..
T Consensus 91 ~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 91 ADAASIDAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp TCHHHHHHHHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 7642 01136899987765432 10 11 2245667777888898887543
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=82.16 E-value=12 Score=30.81 Aligned_cols=103 Identities=11% Similarity=0.143 Sum_probs=64.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.++++|=.|++. .++..+++.+.. .+.+|+.+|.++..++...+... .++.++.+|+.
T Consensus 7 ~gk~~lVTGas~-gIG~a~a~~l~~---------------~G~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~Dv~ 64 (255)
T 4eso_A 7 QGKKAIVIGGTH-GMGLATVRRLVE---------------GGAEVLLTGRNESNIARIREEFG------PRVHALRSDIA 64 (255)
T ss_dssp TTCEEEEETCSS-HHHHHHHHHHHH---------------TTCEEEEEESCHHHHHHHHHHHG------GGEEEEECCTT
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHH---------------CCCEEEEEeCCHHHHHHHHHHhC------CcceEEEccCC
Confidence 356777777654 455555555421 35899999999887766655442 46888999987
Q ss_pred cCC----------CCCCCeeEEEecccccccc-----C---H-----------HHHHHHHHhhccCCcEEEEEe
Q 036563 163 ALC----------FEDSTMDGYTIAFGIRNVT-----H---I-----------EKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 163 ~~~----------~~~~~~D~v~~~~~l~~~~-----~---~-----------~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+.. ..-+..|+++.+....... + . ..+.+.+.+.++++|.++.+.
T Consensus 65 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 65 DLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp CHHHHHHHHHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 642 0113689988766543221 1 1 124566677777888888653
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=81.91 E-value=6.6 Score=35.37 Aligned_cols=93 Identities=15% Similarity=0.112 Sum_probs=59.0
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..+|+=+|+| .++..+++.+.. .+..|+++|.+++.++.+++. .+.++.+|+.+
T Consensus 4 ~~~viIiG~G--r~G~~va~~L~~---------------~g~~vvvId~d~~~v~~~~~~---------g~~vi~GDat~ 57 (413)
T 3l9w_A 4 GMRVIIAGFG--RFGQITGRLLLS---------------SGVKMVVLDHDPDHIETLRKF---------GMKVFYGDATR 57 (413)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHH---------------TTCCEEEEECCHHHHHHHHHT---------TCCCEESCTTC
T ss_pred CCeEEEECCC--HHHHHHHHHHHH---------------CCCCEEEEECCHHHHHHHHhC---------CCeEEEcCCCC
Confidence 4578888875 455555554421 247899999999988877642 45678888876
Q ss_pred CC----CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 164 LC----FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 164 ~~----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
.. ..-...|+|++... . +.....+....+.+.|+..+++
T Consensus 58 ~~~L~~agi~~A~~viv~~~--~-~~~n~~i~~~ar~~~p~~~Iia 100 (413)
T 3l9w_A 58 MDLLESAGAAKAEVLINAID--D-PQTNLQLTEMVKEHFPHLQIIA 100 (413)
T ss_dssp HHHHHHTTTTTCSEEEECCS--S-HHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHhcCCCccCEEEECCC--C-hHHHHHHHHHHHHhCCCCeEEE
Confidence 42 22346888876442 1 1122345556677788888776
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=81.70 E-value=9.7 Score=32.24 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=65.2
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++++|=.|++. +.++..+++.+.. .+++|+.+|.++...+...+..... ..+.++.+|+
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~---------------~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dv 89 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCA---------------QGAEVALTYLSETFKKRVDPLAESL----GVKLTVPCDV 89 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHH---------------TTCEEEEEESSGGGHHHHHHHHHHH----TCCEEEECCT
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHH---------------CCCEEEEEeCChHHHHHHHHHHHhc----CCeEEEEcCC
Confidence 356788888754 3455555555421 3588999999876665555544443 3467888898
Q ss_pred ccCC-----C-----CCCCeeEEEeccccccc----------c--CH-----------HHHHHHHHhhccCCcEEEEEec
Q 036563 162 EALC-----F-----EDSTMDGYTIAFGIRNV----------T--HI-----------EKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 162 ~~~~-----~-----~~~~~D~v~~~~~l~~~----------~--~~-----------~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+.. + .-+..|+++.+..+... + +. ..+++.+.+.++.+|.++.+..
T Consensus 90 ~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 90 SDAESVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp TCHHHHHHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 7642 0 01368999887654321 0 11 2245666777778898887543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.16 E-value=14 Score=30.94 Aligned_cols=80 Identities=9% Similarity=0.075 Sum_probs=52.8
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+.+||=.|++ |.++..+++.+.. .+.+|++++.++...+.+.+.+...+. .++.++.+|+.+
T Consensus 12 ~k~vlITGas-~GIG~~~a~~L~~---------------~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~ 73 (311)
T 3o26_A 12 RRCAVVTGGN-KGIGFEICKQLSS---------------NGIMVVLTCRDVTKGHEAVEKLKNSNH--ENVVFHQLDVTD 73 (311)
T ss_dssp CCEEEESSCS-SHHHHHHHHHHHH---------------TTCEEEEEESCHHHHHHHHHHHHTTTC--CSEEEEECCTTS
T ss_pred CcEEEEecCC-chHHHHHHHHHHH---------------CCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEEccCCC
Confidence 4567766655 5566666665421 358999999998877777666655432 478899999876
Q ss_pred C-C--------C--CCCCeeEEEeccccc
Q 036563 164 L-C--------F--EDSTMDGYTIAFGIR 181 (288)
Q Consensus 164 ~-~--------~--~~~~~D~v~~~~~l~ 181 (288)
. . . .-+..|+++.+..+.
T Consensus 74 ~~~~v~~~~~~~~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 74 PIATMSSLADFIKTHFGKLDILVNNAGVA 102 (311)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred cHHHHHHHHHHHHHhCCCCCEEEECCccc
Confidence 5 2 0 013689998877643
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=81.09 E-value=21 Score=29.32 Aligned_cols=109 Identities=12% Similarity=0.156 Sum_probs=65.1
Q ss_pred CCCeEEEecCCcc-HHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGTG-DVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.+.++|=.|++.+ .++..+++.+.. .+.+++.++.++...+...+.....+- .++.++.+|+
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~---------------~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~ 68 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHE---------------AGARLIFTYAGERLEKSVHELAGTLDR--NDSIILPCDV 68 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHH---------------TTCEEEEEESSGGGHHHHHHHHHTSSS--CCCEEEECCC
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHH---------------CCCEEEEecCchHHHHHHHHHHHhcCC--CCceEEeCCC
Confidence 3567787777522 244444444321 357899999887666655555444331 3688999998
Q ss_pred ccCC-----C-----CCCCeeEEEecccccc-------cc--CH--------------HHHHHHHHhhccCCcEEEEEec
Q 036563 162 EALC-----F-----EDSTMDGYTIAFGIRN-------VT--HI--------------EKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 162 ~~~~-----~-----~~~~~D~v~~~~~l~~-------~~--~~--------------~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+.. + .-+..|+++.+..+.. +. +. ..+++.+.+.++++|.++.+..
T Consensus 69 ~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 69 TNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp SSSHHHHHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 7652 0 0136898887665432 10 11 1245667778888898887543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=80.94 E-value=15 Score=31.04 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=53.7
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
..+.+||=.|++. .++..+++.+.. .+.+|+.++.++..++...+.+...+ .++.++.+|+
T Consensus 29 l~gk~vlVTGas~-gIG~~la~~l~~---------------~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv 89 (301)
T 3tjr_A 29 FDGRAAVVTGGAS-GIGLATATEFAR---------------RGARLVLSDVDQPALEQAVNGLRGQG---FDAHGVVCDV 89 (301)
T ss_dssp STTCEEEEETTTS-HHHHHHHHHHHH---------------TTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCT
T ss_pred cCCCEEEEeCCCC-HHHHHHHHHHHH---------------CCCEEEEEECCHHHHHHHHHHHHhcC---CceEEEEccC
Confidence 3456788777764 455555555421 35889999999988887777666544 4688999998
Q ss_pred ccCC-----C-----CCCCeeEEEecccc
Q 036563 162 EALC-----F-----EDSTMDGYTIAFGI 180 (288)
Q Consensus 162 ~~~~-----~-----~~~~~D~v~~~~~l 180 (288)
.+.. + .-+..|+++.+..+
T Consensus 90 ~d~~~v~~~~~~~~~~~g~id~lvnnAg~ 118 (301)
T 3tjr_A 90 RHLDEMVRLADEAFRLLGGVDVVFSNAGI 118 (301)
T ss_dssp TCHHHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 7642 0 01368998887654
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=80.54 E-value=20 Score=29.57 Aligned_cols=109 Identities=11% Similarity=0.080 Sum_probs=66.3
Q ss_pred CCCeEEEecCCcc-HHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGTG-DVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++++|=-|++++ .++..+++.+.. .+++|..+|.++..++.+.+.+.+.+- .++.++.+|+
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~---------------~Ga~Vvi~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv 67 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQ---------------LGAKLVFTYRKERSRKELEKLLEQLNQ--PEAHLYQIDV 67 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHH---------------TTCEEEEEESSGGGHHHHHHHHGGGTC--SSCEEEECCT
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHH---------------CCCEEEEEECCHHHHHHHHHHHHhcCC--CcEEEEEccC
Confidence 4667887786431 344444444321 358999999999888888777766542 3688888998
Q ss_pred ccCC----------CCCCCeeEEEeccccccc-------c--CHH--------------HHHHHHHhhccCCcEEEEEec
Q 036563 162 EALC----------FEDSTMDGYTIAFGIRNV-------T--HIE--------------KALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 162 ~~~~----------~~~~~~D~v~~~~~l~~~-------~--~~~--------------~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+.. ..-+..|+++.+..+... . ..+ ...+.....++.+|.++.+..
T Consensus 68 ~~~~~v~~~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS 147 (256)
T 4fs3_A 68 QSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTY 147 (256)
T ss_dssp TCHHHHHHHHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEec
Confidence 6531 112468988876543211 1 111 123345567778999886543
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=80.21 E-value=4.2 Score=35.59 Aligned_cols=97 Identities=15% Similarity=0.077 Sum_probs=55.6
Q ss_pred cCCCCC-CeEEEecC-C-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhH----HHHHHHHhhhcCCCC
Q 036563 79 LNPFPG-MKHLDVAG-G-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNM----LNVGKKRALERGYPD 151 (288)
Q Consensus 79 l~~~~~-~~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~----~~~a~~~~~~~~~~~ 151 (288)
....++ .+||=.|+ | .|..+..+++..+ ++++++..+++. .+.++ ..+..
T Consensus 162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G------------------a~vi~~~~~~~~~~~~~~~~~----~lGa~- 218 (364)
T 1gu7_A 162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLN------------------FNSISVIRDRPNLDEVVASLK----ELGAT- 218 (364)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHHT------------------CEEEEEECCCTTHHHHHHHHH----HHTCS-
T ss_pred hccCCCCcEEEECCCCcHHHHHHHHHHHHCC------------------CEEEEEecCccccHHHHHHHH----hcCCe-
Confidence 356678 89999987 4 4788888888763 677777654443 23332 22321
Q ss_pred CceEEEEc------cccc-C-CC---CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 152 KSLLWVEG------DAEA-L-CF---EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 152 ~~v~~~~~------d~~~-~-~~---~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.++.. |+.+ + .. ....+|+|+-.-. ..... ...+.|+++|+++++..
T Consensus 219 ---~vi~~~~~~~~~~~~~i~~~t~~~~~g~Dvvid~~G------~~~~~-~~~~~l~~~G~~v~~g~ 276 (364)
T 1gu7_A 219 ---QVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVG------GKSST-GIARKLNNNGLMLTYGG 276 (364)
T ss_dssp ---EEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSC------HHHHH-HHHHTSCTTCEEEECCC
T ss_pred ---EEEecCccchHHHHHHHHHHhhccCCCceEEEECCC------chhHH-HHHHHhccCCEEEEecC
Confidence 12221 1110 1 01 1246999974322 22333 66799999999987543
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.08 E-value=20 Score=29.67 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=64.2
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCC------------hhHHHHHHHHhhhcCCC
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDIN------------PNMLNVGKKRALERGYP 150 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s------------~~~~~~a~~~~~~~~~~ 150 (288)
.++++|=.|++. .++..+++.+.. .+.+|+.+|.+ ...++.........+
T Consensus 9 ~gk~vlVTGas~-gIG~~ia~~l~~---------------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 70 (287)
T 3pxx_A 9 QDKVVLVTGGAR-GQGRSHAVKLAE---------------EGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG-- 70 (287)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHH---------------TTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHH---------------CCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--
Confidence 355677777654 455555555421 35889999986 555555555554443
Q ss_pred CCceEEEEcccccCC-----C-----CCCCeeEEEeccccccc------cCH-----------HHHHHHHHhhccCCcEE
Q 036563 151 DKSLLWVEGDAEALC-----F-----EDSTMDGYTIAFGIRNV------THI-----------EKALAEAYRVLKRGGRF 203 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~-----~-----~~~~~D~v~~~~~l~~~------~~~-----------~~~l~~~~~~L~pgG~l 203 (288)
.++.++.+|+.+.. + .-+..|+++.+...... .+. ..+++.+.+.++.+|.+
T Consensus 71 -~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~i 149 (287)
T 3pxx_A 71 -RKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASI 149 (287)
T ss_dssp -SCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEE
T ss_pred -CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEE
Confidence 47888999987642 0 01368998877654321 111 22456677777888888
Q ss_pred EEEe
Q 036563 204 LCLE 207 (288)
Q Consensus 204 ~i~~ 207 (288)
+.+.
T Consensus 150 v~is 153 (287)
T 3pxx_A 150 ITTG 153 (287)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 288 | ||||
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 9e-19 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 1e-13 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 8e-13 | |
| d1im8a_ | 225 | c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) | 1e-12 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 4e-12 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 1e-11 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 2e-10 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 9e-10 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-09 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 1e-09 | |
| d1m6ya2 | 192 | c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf | 4e-09 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 5e-09 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 8e-09 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 1e-08 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 2e-08 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 1e-07 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 2e-07 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 2e-07 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 2e-06 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 2e-06 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 2e-06 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 3e-06 | |
| d1vlma_ | 208 | c.66.1.41 (A:) Possible histamine N-methyltransfer | 7e-05 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 8e-04 | |
| d2nxca1 | 254 | c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT | 0.003 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 0.003 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 0.003 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 81.2 bits (199), Expect = 9e-19
Identities = 36/215 (16%), Positives = 75/215 (34%), Gaps = 26/215 (12%)
Query: 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRI 127
H ++ + LD+ G G A V
Sbjct: 1 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-------------------EC 41
Query: 128 YVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIE 187
D M+ V + +++ + +G AE+L F D + D T + + + +
Sbjct: 42 IGVDATKEMVEVASSF--AQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVR 99
Query: 188 KALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDR-----GSY 242
KA+ E RVLK+ GRFL ++ + PV E ++ + P+ + +
Sbjct: 100 KAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSAN 159
Query: 243 QYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277
Q + ++++ ++ + I G + ++
Sbjct: 160 QLAYQDIQKWNLPIQYDSWIKRGGTPADREKQIIT 194
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 66.6 bits (161), Expect = 1e-13
Identities = 43/201 (21%), Positives = 72/201 (35%), Gaps = 39/201 (19%)
Query: 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDIN 133
+L+ + LDVA G G VA V ++ D+
Sbjct: 6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-------------------KVVAFDLT 46
Query: 134 PNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEA 193
++L V + G+ +V+GDAE + F D T + + ++EA
Sbjct: 47 EDILKVARAFIEGNGHQQVE--YVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEA 104
Query: 194 YRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFP 253
YRVLK+GG+ L ++ S + F Y+Y + S R
Sbjct: 105 YRVLKKGGQLLLVDNSAPENDAFDVFYNYVE------------------KERDYSHHRAW 146
Query: 254 PQEKFAAMISDAGFQKVEYEN 274
+ + M+ +AGF+ E
Sbjct: 147 KKSDWLKMLEEAGFELEELHC 167
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 64.7 bits (156), Expect = 8e-13
Identities = 32/246 (13%), Positives = 67/246 (27%), Gaps = 46/246 (18%)
Query: 47 NVFSSVAKNYDLMNDLMSGGL-HRLWKDRLVSKLNPF--PGMKHLDVAGGTGDVAFRILD 103
N ++ A YD L+ + ++ W D ++ K +LD+A GTG++ +
Sbjct: 1 NCYNKFAHIYD---KLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCP 57
Query: 104 TVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163
+ D++ ML+ + + +G + +
Sbjct: 58 KFK-------------------NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI 98
Query: 164 LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYY 223
D I + ++K LK GG F+ ++
Sbjct: 99 NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI---FDINSYYKLSQVLGNN 155
Query: 224 SFSV-----------------IPAIGELVAGDRGSYQYLVESVR-RFPPQEKFAAMISDA 265
F+ + D Y+ E R +E +
Sbjct: 156 DFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHG 215
Query: 266 GFQKVE 271
++
Sbjct: 216 QLNILD 221
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Score = 63.6 bits (153), Expect = 1e-12
Identities = 33/245 (13%), Positives = 66/245 (26%), Gaps = 34/245 (13%)
Query: 45 VSNVFSSVAK----NYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFR 100
V+ VF + + Y + + R D+ G
Sbjct: 7 VAEVFPDMIQRSVPGYSNIITAIGMLAERFVT----------ADSNVYDLGCSRGAATLS 56
Query: 101 ILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160
+N Q +I D + M+ ++ + + + + D
Sbjct: 57 ARRNIN---------------QPNVKIIGIDNSQPMVERCRQHIAAY-HSEIPVEILCND 100
Query: 161 AEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELY 220
+ ++++M L + Y L G + E + L
Sbjct: 101 IRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLL 160
Query: 221 DYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVE--YENL-VG 277
A G L E+V R E + + GF +VE ++ G
Sbjct: 161 IDLHHQFKRANGYSELEVSQKRTAL-ENVMRTDSIETHKVRLKNVGFSQVELWFQCFNFG 219
Query: 278 GVVAI 282
++A+
Sbjct: 220 SMIAV 224
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.1 bits (152), Expect = 4e-12
Identities = 26/226 (11%), Positives = 65/226 (28%), Gaps = 27/226 (11%)
Query: 49 FSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSI 108
F + + + M + M + + + +K L + GG G++ +IL V +
Sbjct: 10 FLNHSTEHQCMQEFM----DKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQ 65
Query: 109 KRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFED 168
+ + E ++ + K E
Sbjct: 66 YPGVCINNEVVEPSAE----QIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121
Query: 169 STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVI 228
D + + V I L + +L + L + +S + +L+ Y
Sbjct: 122 QKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG--SSGWDKLWKKY----- 174
Query: 229 PAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274
++ + + ++ + M+ + G + Y+
Sbjct: 175 ------------GSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDL 208
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 60.7 bits (146), Expect = 1e-11
Identities = 32/221 (14%), Positives = 55/221 (24%), Gaps = 33/221 (14%)
Query: 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRI 127
+ K L+ G LD+ G G +
Sbjct: 10 NNFIKACLIRLYTK-RGDSVLDLGCGKGGDLLKYER------------------AGIGEY 50
Query: 128 YVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFG-----IRN 182
Y DI +N + RA K + + D+ + +
Sbjct: 51 YGVDIAEVSINDARVRARNMKRRFK-VFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFST 109
Query: 183 VTHIEKALAEAYRVLKRGGRFLCLELSHVDI----PVFKELYDYYSFSVIPAIGELVAGD 238
++ A R L+ GG F+ S I + D+Y + +
Sbjct: 110 SESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESV 169
Query: 239 RGSYQYLVESVRRFP----PQEKFAAMISDAGFQKVEYENL 275
R L++SV + G VE +
Sbjct: 170 REYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 210
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 56.4 bits (135), Expect = 2e-10
Identities = 29/153 (18%), Positives = 47/153 (30%), Gaps = 23/153 (15%)
Query: 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINP 134
++ P +DV GTG V + V R+Y D NP
Sbjct: 25 IMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR-------------------RVYAIDRNP 65
Query: 135 NMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAY 194
++ + G D + +EGDA + +D + + I + +
Sbjct: 66 EAISTTEMNLQRHGLGDN-VTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRII---K 121
Query: 195 RVLKRGGRFLCLELSHVDIPVFKELYDYYSFSV 227
LK GGR + + E F V
Sbjct: 122 DKLKPGGRIIVTAILLETKFEAMECLRDLGFDV 154
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 55.5 bits (132), Expect = 9e-10
Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 27/159 (16%)
Query: 47 NVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVN 106
+ +A+ YD M + L+ + + + LD+ GGTG + + +
Sbjct: 7 EFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLK-NPCRVLDLGGGTGKWSLFLQERGF 65
Query: 107 SIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCF 166
+ VL D +E + N+ +
Sbjct: 66 EV-------VLVDPSKEMLEVAREKGVKNV-------------------VEAKAEDLPFP 99
Query: 167 EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205
+ + + V + +KA +E RVL G +
Sbjct: 100 SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA 138
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (134), Expect = 1e-09
Identities = 25/210 (11%), Positives = 59/210 (28%), Gaps = 13/210 (6%)
Query: 1 MAVRVVTRNLGSRLLPMLSSTSLLHSHATSFGFKEVPAEEKSQLVSNVFSSVAK--NYDL 58
M N + L + + + Q+ ++ + K NY+
Sbjct: 67 MQRLCDKYNRAIDSIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEP 126
Query: 59 MNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLE 118
+ + G +++ ++ +D+ G G V ++ N +
Sbjct: 127 FSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGV----- 181
Query: 119 DDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTI-A 177
+ + M +K G GD + + + + I
Sbjct: 182 -EKADIP----AKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFV 236
Query: 178 FGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207
++ L E + +K GGR + +
Sbjct: 237 NNFAFGPEVDHQLKERFANMKEGGRIVSSK 266
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 55.5 bits (132), Expect = 1e-09
Identities = 32/249 (12%), Positives = 81/249 (32%), Gaps = 44/249 (17%)
Query: 45 VSNVFSSVAKNYDLM--NDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRIL 102
+ +++ +A+ YD + + + + + + + LD+A GTG +
Sbjct: 1 MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELA 60
Query: 103 DTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162
+ + + + + +K + V A
Sbjct: 61 ERGYEV------------------VGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF 102
Query: 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC----------------- 205
F+ TM TI + + + K ++ LK GG F+
Sbjct: 103 KNEFDAVTMFFSTIMY--FDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWN 160
Query: 206 --LELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVE-SVRRFPPQEKFAAMI 262
+ I ++E+ + +++ + +LV+ + + P+E ++
Sbjct: 161 EQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGEVKAFLVDDELNIYTPRE--VRLL 218
Query: 263 SDAGFQKVE 271
++ F+KV+
Sbjct: 219 AEKYFEKVK 227
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Score = 53.2 bits (127), Expect = 4e-09
Identities = 28/177 (15%), Positives = 59/177 (33%), Gaps = 28/177 (15%)
Query: 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDI 132
++ L P LD G G + IL+ RI D+
Sbjct: 13 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-----------------CRIIGIDV 55
Query: 133 NPNMLNVGKKRALERGYPDKSLLWVEGDAEALC--FEDSTMDGYTIAFGI---------R 181
+ +L + +++ E +A+ L +DG + G+ R
Sbjct: 56 DSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENR 115
Query: 182 NVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGD 238
+ ++++ L +A +L GGR + + ++ + KE + I + +
Sbjct: 116 ELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRNSKKLRILTEKPVRPSE 172
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.8 bits (128), Expect = 5e-09
Identities = 25/148 (16%), Positives = 41/148 (27%), Gaps = 32/148 (21%)
Query: 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVC 130
+K L+ L + LDVA GTG + + ++E +
Sbjct: 44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIML-------------------VEEGFSVTSV 84
Query: 131 DINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL-----CFEDSTMDGYTIAFG------ 179
D + ML K R WV +A L D
Sbjct: 85 DASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLP 144
Query: 180 --IRNVTHIEKALAEAYRVLKRGGRFLC 205
+ + AL +++ GG +
Sbjct: 145 DSKGDQSEHRLALKNIASMVRPGGLLVI 172
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.5 bits (128), Expect = 8e-09
Identities = 11/145 (7%), Positives = 35/145 (24%), Gaps = 27/145 (18%)
Query: 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDI 132
+ + G +D+ G G+ + + C+I
Sbjct: 206 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGC-----------------ALSFGCEI 248
Query: 133 NPNMLNVGKKRALERGY--------PDKSLLWVEGDAEALCFEDSTMDGYTIAF--GIRN 182
+ ++ + E + ++ + +
Sbjct: 249 MDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLF 308
Query: 183 VTHIEKALAEAYRVLKRGGRFLCLE 207
+ K + + + K G + + L+
Sbjct: 309 DEDLNKKVEKILQTAKVGCKIISLK 333
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 52.2 bits (124), Expect = 1e-08
Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 32/219 (14%)
Query: 53 AKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRA 112
++ +D +S ++ +WK + +D G G + ++ +
Sbjct: 5 TRDLYYNDDYVSFLVNTVWK--------ITKPVHIVDYGCGYGYLGLVLMPLLP------ 50
Query: 113 LQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMD 172
E ++ D +L ++ Y + L + + D
Sbjct: 51 ----------EGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATE----IELNDKYD 96
Query: 173 GYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232
+ ++T E L + +K+GG+ +C E H + L D S +G
Sbjct: 97 IAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE-PHWISNMASYLLDGEKQSEFIQLG 155
Query: 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVE 271
L Q + + K +S+ G + +E
Sbjct: 156 VLQKLFESDTQ---RNGKDGNIGMKIPIYLSELGVKNIE 191
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 51.9 bits (123), Expect = 2e-08
Identities = 34/213 (15%), Positives = 52/213 (24%), Gaps = 48/213 (22%)
Query: 68 HRLWK-------DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120
HR+ L L PG + LD+ G+G++
Sbjct: 11 HRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGI------------- 57
Query: 121 LQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGI 180
D++ K+RA E G ++ + A + D
Sbjct: 58 -----TGTGIDMSSLFTAQAKRRAEELGVSERVHFIH--NDAAGYVANEKCDVAACVGAT 110
Query: 181 RNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRG 240
A + LK GG L E +P +E+
Sbjct: 111 WIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACG---------------- 154
Query: 241 SYQYLVESVRRFPPQEKFAAMISDAGFQKVEYE 273
V S F D G+ VE
Sbjct: 155 -----VSSTSDFLTLPGLVGAFDDLGYDVVEMV 182
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (118), Expect = 1e-07
Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 24/140 (17%)
Query: 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDI 132
+ ++S ++ PG L+ G+G ++ + V + R+ ++
Sbjct: 88 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVG----------------SQGRVISFEV 131
Query: 133 NPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAF-------GIRNVTH 185
+ ++ KK + L VE + + F + G T ++ +
Sbjct: 132 RKDHHDLAKKN-YKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLN 190
Query: 186 IEKALAEAYRVLKRGGRFLC 205
L Y LK GG
Sbjct: 191 PHVTLPVFYPHLKHGGVCAV 210
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 48.8 bits (116), Expect = 2e-07
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 22/133 (16%)
Query: 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDIN 133
++V + + FPG + L+ G+G + +L V ++ +
Sbjct: 87 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVG----------------PAGQVISYEQR 130
Query: 134 PNMLNVGKKRALE-RGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAE 192
+ ++ G P + V D D ++D + ++ + L
Sbjct: 131 ADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDA 185
Query: 193 AYRVLKRGGRFLC 205
R+L GG +
Sbjct: 186 VSRLLVAGGVLMV 198
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 2e-07
Identities = 26/210 (12%), Positives = 62/210 (29%), Gaps = 31/210 (14%)
Query: 37 PAEEKSQLVSNVFSSVAKNYDLMN---DLMSGGLHRLWKDRL---VSKLNPFPGMKHLDV 90
P + S + + YD + ++ + W+ ++ G + L+V
Sbjct: 1 PIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSKGGRVLEV 60
Query: 91 AGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRA----LE 146
G A ++ + ++ + N + + A +
Sbjct: 61 GFGMAIAASKVQE------------------APIDEHWIIECNDGVFQRLRDWAPRQTHK 102
Query: 147 RGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206
V F+ D Y ++ + A+R+LK GG
Sbjct: 103 VIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162
Query: 207 ELS---HVDIPVFKELYDYYSFSVIPAIGE 233
L+ + + ++ + + +PA+ E
Sbjct: 163 NLTSWGELMKSKYSDITIMFEETQVPALLE 192
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.5 bits (107), Expect = 2e-06
Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 20/146 (13%)
Query: 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDIN 133
+ PG L + +G A + D V E +I+ + +
Sbjct: 64 NGLKNFPIKPGKSVLYLGIASGTTASHVSDIVG----------------WEGKIFGIEFS 107
Query: 134 PNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEA 193
P +L ER +L E +D I + T + + A
Sbjct: 108 PRVLRELVPIVEERRNIV-PILGDATKPEEYRALVPKVD--VIFEDVAQPTQAKILIDNA 164
Query: 194 YRVLKRGGRF-LCLELSHVDIPVFKE 218
LKRGG + ++ +D+ E
Sbjct: 165 EVYLKRGGYGMIAVKSRSIDVTKEPE 190
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 45.1 bits (106), Expect = 2e-06
Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 22/129 (17%)
Query: 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNM 136
+L + L + +G + D V+ E IY + +
Sbjct: 50 HRLKLRGDERVLYLGAASGTTVSHLADIVD-----------------EGIIYAVEYSAKP 92
Query: 137 LNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFG-IRNVTHIEKALAEAYR 195
+ +++ + DA ++ + + I IE A A
Sbjct: 93 FEKLLELV----RERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEF 148
Query: 196 VLKRGGRFL 204
LK G +
Sbjct: 149 FLKEKGEVV 157
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 45.4 bits (107), Expect = 2e-06
Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 23/131 (17%)
Query: 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINP 134
++ + PGM L+V G+G+++ IL +N + + V + +
Sbjct: 77 IIMRCGLRPGMDILEVGVGSGNMSSYILYALN----------------GKGTLTVVERDE 120
Query: 135 NMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAY 194
+ L L Y ++ D + ++ + +
Sbjct: 121 DNLKKAMDN-LSEFYDIGNVRTSRSDIADFISDQMYDAVIA------DIPDPWNHVQKIA 173
Query: 195 RVLKRGGRFLC 205
++K G
Sbjct: 174 SMMKPGSVATF 184
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 45.1 bits (106), Expect = 3e-06
Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 20/132 (15%)
Query: 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDIN 133
+ + + K L + G + D ++ +Y +
Sbjct: 65 KGLKVMPIKRDSKILYLGASAGTTPSHVADIA-----------------DKGIVYAIEYA 107
Query: 134 PNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEA 193
P ++ ER + + + + + + I + E + A
Sbjct: 108 PRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNA 164
Query: 194 YRVLKRGGRFLC 205
LK+GG +
Sbjct: 165 KWFLKKGGYGMI 176
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Score = 40.5 bits (93), Expect = 7e-05
Identities = 39/231 (16%), Positives = 75/231 (32%), Gaps = 57/231 (24%)
Query: 45 VSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPF-PGMKHLDVAGGTGDVAFRILD 103
+ ++F Y+ +HR + + P + +++ GTG A +
Sbjct: 2 MWHIFERFVNEYERWFL-----VHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPL-- 54
Query: 104 TVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163
+ + M + + ++G AE
Sbjct: 55 ---------------------KIKIGVEPSERM---------AEIARKRGVFVLKGTAEN 84
Query: 164 LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYY 223
L +D + D + I V E+AL EAYR+LK+GG + D
Sbjct: 85 LPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGI------------VDRE 132
Query: 224 SFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274
SF +G ++ + + RF E+ ++ AGF++ +
Sbjct: 133 SF-----LGREYEKNKEKSVFYKNA--RFFSTEELMDLMRKAGFEEFKVVQ 176
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 38.0 bits (87), Expect = 8e-04
Identities = 22/148 (14%), Positives = 43/148 (29%), Gaps = 34/148 (22%)
Query: 61 DLMSGGLHRLWKDRLVSKLN---PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVL 117
+ G ++ +D +V++L LD+ G G D +
Sbjct: 59 AFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALP----------- 107
Query: 118 EDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIA 177
E + D++ + + + + L F D++MD
Sbjct: 108 ------EITTFGLDVSKVAIKAAA-------KRYPQVTFCVASSHRLPFSDTSMDAIIRI 154
Query: 178 FGIRNVTHIEKALAEAYRVLKRGGRFLC 205
+ E RV+K GG +
Sbjct: 155 YAPCK-------AEELARVVKPGGWVIT 175
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Score = 36.4 bits (83), Expect = 0.003
Identities = 18/103 (17%), Positives = 29/103 (28%), Gaps = 7/103 (6%)
Query: 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH 185
+ DI+P +L + A G + ++EG EA
Sbjct: 144 KALGVDIDPMVLPQAEANAKRNGVRPR---FLEGSLEAALPFGPFDLLVAN----LYAEL 196
Query: 186 IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVI 228
L GGR L + P+ +E F +
Sbjct: 197 HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPL 239
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 36.1 bits (82), Expect = 0.003
Identities = 31/216 (14%), Positives = 60/216 (27%), Gaps = 38/216 (17%)
Query: 57 DLMNDLMSGGLHRLWKDRLVSKLNPFPGMKH-LDVAGGTGDVAFRILDTVNSIKRRALQD 115
D + LMS ++ + + ++H LDV GG G + I ++
Sbjct: 56 DSFDALMSCDEDLAYEA--PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLR------ 107
Query: 116 VLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYT 175
++R + G D+ + EGD + + +
Sbjct: 108 ------------GTLVELAGPAERARRRFADAGLADR-VTVAEGDFFKPLPVTADVVLLS 154
Query: 176 IAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELV 235
+ L R L+ GGR L L+ + V+ +
Sbjct: 155 FVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLL----------- 203
Query: 236 AGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVE 271
+ L R +++ + AG
Sbjct: 204 -----DLRMLTFMGGRVRTRDEVVDLAGSAGLALAS 234
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.0 bits (82), Expect = 0.003
Identities = 19/137 (13%), Positives = 43/137 (31%), Gaps = 23/137 (16%)
Query: 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVC 130
++D + + F LDV GTG ++ K A ++
Sbjct: 23 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAA------KAGA------------KKVLGV 64
Query: 131 DINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGY---TIAFGIRNVTHIE 187
D + + L + + ++G E + +D + + + + ++
Sbjct: 65 DQSEILYQAMDIIRLNKLEDTIT--LIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLD 122
Query: 188 KALAEAYRVLKRGGRFL 204
L + L +GG
Sbjct: 123 SVLYAKNKYLAKGGSVY 139
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 288 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.93 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.93 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.91 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.91 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.89 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.88 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.88 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.87 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.84 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.83 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.83 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.82 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.82 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.82 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.82 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.81 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.81 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.81 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.81 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.78 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.78 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.75 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.74 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.72 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.72 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.7 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.68 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.68 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.68 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.67 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.67 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.66 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.66 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.66 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.66 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.65 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.64 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.63 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.63 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.59 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.56 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.55 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.54 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.54 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.54 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.53 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.51 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.5 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.49 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.48 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.48 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.47 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.42 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.41 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.35 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.32 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.32 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.31 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.29 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.27 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.2 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.2 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.14 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.13 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.12 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.09 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.07 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.0 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.98 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.98 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.96 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.95 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.94 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.88 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.83 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.82 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.82 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.76 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.74 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.7 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.69 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.68 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.68 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.68 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.68 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.65 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.64 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.62 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.59 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.53 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.51 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.48 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.43 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.37 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.16 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.14 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.11 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.96 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.68 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.57 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.49 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.36 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.18 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.17 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.1 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.99 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.98 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.9 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.86 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.74 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.69 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.65 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.56 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.5 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.46 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.27 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.19 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.06 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 95.57 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.51 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.23 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 95.04 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 94.96 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.88 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.83 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.54 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.49 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.01 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.96 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 93.82 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.09 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.05 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.86 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.51 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 92.42 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.99 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.74 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 90.23 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 89.78 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 89.72 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 89.6 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 88.89 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 88.73 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 88.63 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 88.47 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 86.68 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 86.29 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 84.91 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 84.85 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 83.95 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 83.37 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 83.01 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 82.39 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 81.98 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 81.77 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 80.6 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 80.16 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 80.02 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.93 E-value=1.5e-25 Score=188.60 Aligned_cols=163 Identities=26% Similarity=0.368 Sum_probs=135.8
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
++++.++.+++.+|||||||+|.++..+++.. .+++++|+|+.|++.|+++....+. ++
T Consensus 6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~-------------------~~v~gvD~s~~~i~~A~~~~~~~~~--~~ 64 (231)
T d1vl5a_ 6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFV-------------------KKVVAFDLTEDILKVARAFIEGNGH--QQ 64 (231)
T ss_dssp HHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS-------------------SEEEEEESCHHHHHHHHHHHHHTTC--CS
T ss_pred HHHHhcCCCCcCEEEEecccCcHHHHHHHHhC-------------------CEEEEEECCHHHHhhhhhccccccc--cc
Confidence 46677888889999999999999999888763 7899999999999999999888776 48
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccc
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGE 233 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (288)
+.+.++|++++++++++||+|++..+++|++|+..+++++.++|+|||++++.++..+....+......+.....
T Consensus 65 i~~~~~d~~~l~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~----- 139 (231)
T d1vl5a_ 65 VEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERD----- 139 (231)
T ss_dssp EEEEECCC-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHC-----
T ss_pred ccccccccccccccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcc-----
Confidence 999999999999999999999999999999999999999999999999999999888877766665544321000
Q ss_pred cccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 234 LVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
....++++.+++.++|+++||+++++..+
T Consensus 140 -------------~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 168 (231)
T d1vl5a_ 140 -------------YSHHRAWKKSDWLKMLEEAGFELEELHCF 168 (231)
T ss_dssp -------------TTCCCCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred -------------cCcccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 00112457899999999999998877654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.93 E-value=6.2e-25 Score=185.60 Aligned_cols=165 Identities=24% Similarity=0.333 Sum_probs=138.5
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+.+++.++.+|+.+|||||||+|.++..+++.. .+++|+|+|+.|++.|+++....++
T Consensus 5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~-------------------~~v~gvD~S~~~l~~A~~~~~~~~~-- 63 (234)
T d1xxla_ 5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV-------------------QECIGVDATKEMVEVASSFAQEKGV-- 63 (234)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-------------------SEEEEEESCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC-------------------CeEEEEeCChhhhhhhhhhhccccc--
Confidence 3567888999999999999999999999998864 6899999999999999999888776
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAI 231 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (288)
+++.+.++|++++++++++||+|+|..+++|++++..+++++.++|||||++++.++..+..+.+..+...+.....+
T Consensus 64 ~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 141 (234)
T d1xxla_ 64 ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDP-- 141 (234)
T ss_dssp CSEEEEECBTTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCT--
T ss_pred ccccccccccccccccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCC--
Confidence 479999999999999999999999999999999999999999999999999999988888777776655543211100
Q ss_pred cccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 232 GELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
...+..+..++..+++++||.+..+..+
T Consensus 142 ----------------~~~~~~~~~~~~~~~~~~gf~~~~~~~~ 169 (234)
T d1xxla_ 142 ----------------SHVRESSLSEWQAMFSANQLAYQDIQKW 169 (234)
T ss_dssp ----------------TCCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----------------cccccCCHHHHHHHHHHCCCceeEEEEe
Confidence 0112347889999999999988776554
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.91 E-value=8.5e-23 Score=171.34 Aligned_cols=186 Identities=14% Similarity=0.086 Sum_probs=132.2
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
+++.+|||+|||+|..+..+++... .++.+++|+|+|+.|++.|+++....+.. .++.+...|+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~---------------~~~~~v~giD~S~~ml~~A~~~~~~~~~~-~~~~~~~~d~ 101 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNIN---------------QPNVKIIGIDNSQPMVERCRQHIAAYHSE-IPVEILCNDI 101 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCC---------------CSSCEEEEECSCHHHHHHHHHHHHTSCCS-SCEEEECSCT
T ss_pred CCCCEEEEeccchhhHHHHHHHhhc---------------CCCCceEEeCCCHHHHHHHHHHhHhhccc-chhhhccchh
Confidence 4678999999999999999988642 15689999999999999999998776654 5677888887
Q ss_pred ccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCC
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDR 239 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (288)
.+.+ .+.+|++++..++++++ ++.++|+++++.|+|||.+++.+...+..+.................+ ......
T Consensus 102 ~~~~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 178 (225)
T d1im8a_ 102 RHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANG-YSELEV 178 (225)
T ss_dssp TTCC--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTT-GGGSTT
T ss_pred hccc--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcC-CCHHHH
Confidence 6654 45799999999999884 778999999999999999999988877665544332222111111111 111111
Q ss_pred cchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 240 GSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
.......+......+.+++.++|+++||+.+++..-.. .++.++|+|
T Consensus 179 ~~~~~~~~~~~~~~s~~~~~~~L~~aGF~~v~~~~~~~-~f~~~~a~k 225 (225)
T d1im8a_ 179 SQKRTALENVMRTDSIETHKVRLKNVGFSQVELWFQCF-NFGSMIAVK 225 (225)
T ss_dssp HHHHHHHHHHCCCCCHHHHHHHHHHHTCSEEEEEEEET-TEEEEEEEC
T ss_pred HHHHHHhhcccCCCCHHHHHHHHHHcCCCceEEeeeeC-ceEEEEEEC
Confidence 11111112334466899999999999999998764333 355577766
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.91 E-value=3.6e-23 Score=179.49 Aligned_cols=161 Identities=16% Similarity=0.113 Sum_probs=131.6
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+....+..++.+|||||||+|.++..+++.. +.+|+++|+|+.|++.++++....++. +
T Consensus 57 ~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~------------------~~~v~gvD~s~~~i~~a~~~~~~~gl~-~ 117 (282)
T d2o57a1 57 SELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF------------------GVSIDCLNIAPVQNKRNEEYNNQAGLA-D 117 (282)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH------------------CCEEEEEESCHHHHHHHHHHHHHHTCT-T
T ss_pred HHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccC------------------CcEEEEEeccchhhhhhhccccccccc-c
Confidence 344455577889999999999999999999875 379999999999999999999988887 7
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCCh---HHHHHHHHHhhccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDI---PVFKELYDYYSFSVIP 229 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~ 229 (288)
++.+..+|+.++++++++||+|++..+++|++++..+++++.++|||||++++.++...+. ...........
T Consensus 118 ~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~----- 192 (282)
T d2o57a1 118 NITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIK----- 192 (282)
T ss_dssp TEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHT-----
T ss_pred cccccccccccccccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhc-----
Confidence 8999999999999999999999999999999999999999999999999999877654322 11111111110
Q ss_pred cccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 230 AIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
...+.+.+++.++++++||+.+......
T Consensus 193 -------------------~~~~~s~~~~~~~l~~~Gf~~i~~~d~~ 220 (282)
T d2o57a1 193 -------------------LHDMGSLGLYRSLAKECGLVTLRTFSRP 220 (282)
T ss_dssp -------------------CSSCCCHHHHHHHHHHTTEEEEEEEECH
T ss_pred -------------------cCCCCCHHHHHHHHHHcCCceEEEEECc
Confidence 1124578899999999999998887653
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=9.4e-23 Score=168.79 Aligned_cols=175 Identities=21% Similarity=0.310 Sum_probs=124.1
Q ss_pred HHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCC
Q 036563 45 VSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEE 124 (288)
Q Consensus 45 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (288)
|.++|+..+..||............. .+.+ ..+ .++.+|||||||+|.++..+
T Consensus 2 ~~~~f~~~a~~Yd~w~~~~~~~~~~~-~~~~-~~~--~~~~~vLDiGcG~G~~~~~~----------------------- 54 (208)
T d1vlma_ 2 MWHIFERFVNEYERWFLVHRFAYLSE-LQAV-KCL--LPEGRGVEIGVGTGRFAVPL----------------------- 54 (208)
T ss_dssp TTHHHHHTHHHHHHHHHHTHHHHHHH-HHHH-HHH--CCSSCEEEETCTTSTTHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH-HHHH-Hhh--CCCCeEEEECCCCccccccc-----------------------
Confidence 35788999999986432211111111 1222 222 34568999999999886544
Q ss_pred ceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEE
Q 036563 125 TRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 125 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
.+++|+|+|+.|++.++++ ++.++++|++++++++++||+|++..+++|++++..++++++++|+|||.++
T Consensus 55 ~~~~giD~s~~~~~~a~~~---------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~ 125 (208)
T d1vlma_ 55 KIKIGVEPSERMAEIARKR---------GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLI 125 (208)
T ss_dssp TCCEEEESCHHHHHHHHHT---------TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEEeCChhhccccccc---------ccccccccccccccccccccccccccccccccccccchhhhhhcCCCCceEE
Confidence 3468999999999998763 5889999999999988999999999999999999999999999999999999
Q ss_pred EEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 205 CLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 205 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
+.+...... ......... ...... ...++++.+++.++|+++||+++++..
T Consensus 126 i~~~~~~~~--~~~~~~~~~------~~~~~~-----------~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 126 VGIVDRESF--LGREYEKNK------EKSVFY-----------KNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp EEEECSSSH--HHHHHHHTT------TC-CCS-----------TTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred EEecCCcch--hHHhhhhcc------cccccc-----------ccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 877654321 111111110 000000 012356899999999999999888764
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=5.5e-23 Score=172.21 Aligned_cols=148 Identities=17% Similarity=0.140 Sum_probs=118.4
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
...++.+|||||||+|..+..++... ..+|+++|+|++|++.|+++....+. .++.+.++
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~------------------~~~v~~vD~s~~~l~~ak~~~~~~~~--~~~~f~~~ 116 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPL------------------FREVDMVDITEDFLVQAKTYLGEEGK--RVRNYFCC 116 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTT------------------CSEEEEEESCHHHHHHHHHHTGGGGG--GEEEEEEC
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhc------------------CCEEEEeecCHHHhhccccccccccc--cccccccc
Confidence 44566799999999999998887664 26899999999999999999876654 47899999
Q ss_pred ccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccC
Q 036563 160 DAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAG 237 (288)
Q Consensus 160 d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (288)
|+.++++++++||+|++..+++|+++. ..++++++++|+|||.+++.+........+ ..
T Consensus 117 d~~~~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~-------------------~~ 177 (222)
T d2ex4a1 117 GLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVIL-------------------DD 177 (222)
T ss_dssp CGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEE-------------------ET
T ss_pred cccccccccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEccccccccc-------------------cc
Confidence 999998888899999999999999865 479999999999999999887655432100 00
Q ss_pred CCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 238 DRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
.. .....+.++++++|+++||++++.+..
T Consensus 178 ~~---------~~~~~~~~~~~~l~~~aGf~ii~~~~q 206 (222)
T d2ex4a1 178 VD---------SSVCRDLDVVRRIICSAGLSLLAEERQ 206 (222)
T ss_dssp TT---------TEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred CC---------ceeeCCHHHHHHHHHHcCCEEEEEEEe
Confidence 00 011237899999999999999988764
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=4.7e-22 Score=168.88 Aligned_cols=163 Identities=20% Similarity=0.179 Sum_probs=130.6
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+.+...+...|+.+|||||||+|..+..+++.. +.+++|+|+|+.|++.++++....++.
T Consensus 21 ~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~------------------~~~v~GvD~s~~~~~~ar~~~~~~gl~ 82 (245)
T d1nkva_ 21 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH------------------GITGTGIDMSSLFTAQAKRRAEELGVS 82 (245)
T ss_dssp HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT------------------CCEEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc------------------CCEEEEEecccchhhHHHHHHHHhhcc
Confidence 33567788899999999999999999999988875 379999999999999999999888876
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccc
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPA 230 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (288)
+++++..+|+.++ .++++||+|++..+++|+.++..++++++++|||||++++.+......+........+..
T Consensus 83 -~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~----- 155 (245)
T d1nkva_ 83 -ERVHFIHNDAAGY-VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGV----- 155 (245)
T ss_dssp -TTEEEEESCCTTC-CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTC-----
T ss_pred -ccchhhhhHHhhc-cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhcc-----
Confidence 7899999999887 457789999999999999999999999999999999999876543332222222221110
Q ss_pred ccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 231 IGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
.....+.+..++...++++||+++....
T Consensus 156 ----------------~~~~~~~~~~~~~~~~~~aG~~~v~~~~ 183 (245)
T d1nkva_ 156 ----------------SSTSDFLTLPGLVGAFDDLGYDVVEMVL 183 (245)
T ss_dssp ----------------SCGGGSCCHHHHHHHHHTTTBCCCEEEE
T ss_pred ----------------CCCcccCCHHHHHHHHHHcCCEEEEEEe
Confidence 0011245788899999999999887643
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.87 E-value=3.9e-22 Score=170.42 Aligned_cols=183 Identities=14% Similarity=0.116 Sum_probs=133.2
Q ss_pred HHHHHHHhHhhHHHhhhhhhhh--hhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccc
Q 036563 43 QLVSNVFSSVAKNYDLMNDLMS--GGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120 (288)
Q Consensus 43 ~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~ 120 (288)
..-.+||+.+....+.+...+. ...+-...+.+++.++..++.+|||+|||+|.++..++....
T Consensus 51 ~~~~~yW~~~~~t~~~mlgg~~~~~~~d~~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~-------------- 116 (254)
T d1xtpa_ 51 GKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY-------------- 116 (254)
T ss_dssp HHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC--------------
T ss_pred hchhhhhhcCchhcccccCCccccchhhHHHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcC--------------
Confidence 3445556555554443322211 112223446677778777888999999999999998887652
Q ss_pred cCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhcc
Q 036563 121 LQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLK 198 (288)
Q Consensus 121 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~ 198 (288)
..|+++|+++.|++.|+++.... +++++.++|+.++++++++||+|++..+++|+++. .++|+++++.|+
T Consensus 117 ----~~v~~vD~s~~~l~~a~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~Lk 188 (254)
T d1xtpa_ 117 ----ATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALT 188 (254)
T ss_dssp ----SEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE
T ss_pred ----ceEEEEcCCHHHHHhhhcccccc----ccceeEEccccccccCCCccceEEeeccccccchhhhHHHHHHHHHhcC
Confidence 68999999999999999887654 57899999999998888899999999999999865 578999999999
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 199 RGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 199 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
|||.+++.+....... ......... ...+.++++++|+++||++++.+.
T Consensus 189 pgG~iii~e~~~~~~~------------------~~~d~~d~~---------~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 189 PNGYIFFKENCSTGDR------------------FLVDKEDSS---------LTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp EEEEEEEEEEBC--CC------------------EEEETTTTE---------EEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred CCcEEEEEecCCCCCc------------------ceecccCCc---------eeCCHHHHHHHHHHcCCEEEEEEe
Confidence 9999998765432110 000000000 123788999999999999998765
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.84 E-value=3.3e-20 Score=158.17 Aligned_cols=167 Identities=20% Similarity=0.278 Sum_probs=126.4
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+...++.....+|||||||+|.++..+++.+ |+.+++++|+ +.+++.++++....++. .
T Consensus 70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~-----------------p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~ 130 (253)
T d1tw3a2 70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-----------------PHVSATVLEM-AGTVDTARSYLKDEGLS-D 130 (253)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-----------------TTCEEEEEEC-TTHHHHHHHHHHHTTCT-T
T ss_pred HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhc-----------------ceeEEEEccC-HHHHHHHHHHHHHhhcc-c
Confidence 456677777777899999999999999999997 5789999998 77999999999888877 7
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPA 230 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (288)
+++++.+|+.+. .+ .+||+|++.+++|++++. .++|+++++.|||||++++.|...+................+..
T Consensus 131 rv~~~~~D~~~~-~~-~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~ 208 (253)
T d1tw3a2 131 RVDVVEGDFFEP-LP-RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVF 208 (253)
T ss_dssp TEEEEECCTTSC-CS-SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHH
T ss_pred chhhccccchhh-cc-cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhh
Confidence 899999998653 22 469999999999999765 47899999999999999998875543221111111000000000
Q ss_pred ccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC
Q 036563 231 IGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277 (288)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 277 (288)
.+ -+..+.++|+++|+++||+++++..+..
T Consensus 209 ~~-----------------g~~rt~~e~~~ll~~AGf~~~~v~~~~~ 238 (253)
T d1tw3a2 209 LG-----------------GALRTREKWDGLAASAGLVVEEVRQLPS 238 (253)
T ss_dssp HS-----------------CCCCBHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CC-----------------CcCCCHHHHHHHHHHCCCeEEEEEECCC
Confidence 00 0134789999999999999999987755
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.83 E-value=1.1e-20 Score=160.33 Aligned_cols=134 Identities=20% Similarity=0.259 Sum_probs=101.6
Q ss_pred HHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcC--CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCC
Q 036563 47 NVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLN--PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEE 124 (288)
Q Consensus 47 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (288)
|+|+++|..||.+...- . .++.+.+.+.+.+. ..++.+|||+|||+|..+..+++..
T Consensus 1 ~~y~~~A~~YD~l~~~~-~-~y~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g------------------- 59 (246)
T d1y8ca_ 1 NCYNKFAHIYDKLIRAD-V-DYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF------------------- 59 (246)
T ss_dssp CCHHHHHHHHHHHTTCS-C-CHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS-------------------
T ss_pred CCHHHHHHHHHHHhcCC-C-CHHHHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhC-------------------
Confidence 35788888898543211 0 12334444434332 2345789999999999999998863
Q ss_pred ceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEec-ccccccc---CHHHHHHHHHhhccCC
Q 036563 125 TRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIA-FGIRNVT---HIEKALAEAYRVLKRG 200 (288)
Q Consensus 125 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~-~~l~~~~---~~~~~l~~~~~~L~pg 200 (288)
.+++|+|+|+.|++.|+++....+ .+++++++|+.+++.+ ++||+|+|. .+++++. ++.+++++++++|+||
T Consensus 60 ~~v~GvD~S~~ml~~A~~~~~~~~---~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 135 (246)
T d1y8ca_ 60 KNTWAVDLSQEMLSEAENKFRSQG---LKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG 135 (246)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTT---CCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE
T ss_pred CccEeeccchhhhhhccccccccC---ccceeeccchhhhccc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999887765 3699999999988754 589999986 4666665 4567999999999999
Q ss_pred cEEEE
Q 036563 201 GRFLC 205 (288)
Q Consensus 201 G~l~i 205 (288)
|.|++
T Consensus 136 G~~i~ 140 (246)
T d1y8ca_ 136 GVFIF 140 (246)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99885
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=3.4e-20 Score=156.43 Aligned_cols=134 Identities=22% Similarity=0.275 Sum_probs=104.8
Q ss_pred HHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCc
Q 036563 46 SNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEET 125 (288)
Q Consensus 46 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
.++|++.++.||...........+.+...+..... .++.+|||+|||+|.++..+++. +.
T Consensus 6 ~~~yd~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-------------------~~ 65 (246)
T d2avna1 6 WEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYL-KNPCRVLDLGGGTGKWSLFLQER-------------------GF 65 (246)
T ss_dssp HHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHC-CSCCEEEEETCTTCHHHHHHHTT-------------------TC
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc-CCCCEEEEECCCCchhccccccc-------------------ce
Confidence 57899999999865443332222333333333222 24679999999999999999876 37
Q ss_pred eEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEec-cccccccCHHHHHHHHHhhccCCcEEE
Q 036563 126 RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIA-FGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 126 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~-~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
+++|+|+|+.|++.|+++. ...++.+|++++++++++||+|++. .+++|++|+..+|+++.++|||||.++
T Consensus 66 ~v~giD~s~~~l~~a~~~~--------~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~i 137 (246)
T d2avna1 66 EVVLVDPSKEMLEVAREKG--------VKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLI 137 (246)
T ss_dssp EEEEEESCHHHHHHHHHHT--------CSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEeeccccccccccccc--------ccccccccccccccccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEE
Confidence 9999999999999998763 2235779999999989999999985 578999999999999999999999998
Q ss_pred EEe
Q 036563 205 CLE 207 (288)
Q Consensus 205 i~~ 207 (288)
+..
T Consensus 138 i~~ 140 (246)
T d2avna1 138 ATV 140 (246)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=7.9e-19 Score=151.66 Aligned_cols=164 Identities=18% Similarity=0.188 Sum_probs=130.1
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+.+++.+...++.+|||||||.|.++..+++..+ ++|+|+++|+++++.++++....++.
T Consensus 51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g------------------~~v~git~s~~Q~~~a~~~~~~~g~~- 111 (285)
T d1kpga_ 51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD------------------VNVVGLTLSKNQANHVQQLVANSENL- 111 (285)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC------------------CEEEEEESCHHHHHHHHHHHHTCCCC-
T ss_pred HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCC------------------cceEEEeccHHHHHHHHHHHHhhhhh-
Confidence 36788889999999999999999999999999974 89999999999999999998888877
Q ss_pred CceEEEEcccccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccCCChHHH-----------HH
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSHVDIPVF-----------KE 218 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-----------~~ 218 (288)
+++++...|...++ ++||.|++...++|+. +...+++++.++|+|||++++.+++....... ..
T Consensus 112 ~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 188 (285)
T d1kpga_ 112 RSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFAR 188 (285)
T ss_dssp SCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHH
T ss_pred hhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhc
Confidence 79999999987664 5799999999999995 45889999999999999999877764322111 11
Q ss_pred HHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 219 LYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
.... +.+.+.... .+++..++.++++++||.+++++++.
T Consensus 189 ~~~f--------i~kyiFpgg-----------~lPsl~~~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 189 FLKF--------IVTEIFPGG-----------RLPSIPMVQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp HHHH--------HHHHTSTTC-----------CCCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred hhhH--------HHHHhccCC-----------CCCChhhHHHHHHHhchhhcccccch
Confidence 1111 111111111 25688999999999999999998764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.82 E-value=8e-20 Score=153.02 Aligned_cols=157 Identities=13% Similarity=0.130 Sum_probs=113.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||||||+|.++..+++.. .+|+++|+|+++++.++++.. .++.++.+|+
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g-------------------~~v~giD~s~~~i~~a~~~~~------~~~~~~~~~~ 73 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHF-------------------NDITCVEASEEAISHAQGRLK------DGITYIHSRF 73 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC-------------------SCEEEEESCHHHHHHHHHHSC------SCEEEEESCG
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcC-------------------CeEEEEeCcHHHhhhhhcccc------cccccccccc
Confidence 346789999999999999887653 689999999999999987743 4689999999
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHH-hhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCc
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAY-RVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRG 240 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~-~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (288)
++.++ +++||+|++..+++|++++..+|+++. ++|+|||.+++....... +......+. ........ .
T Consensus 74 ~~~~~-~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~---~~~~~~~~~-~~~~~~~~------~ 142 (225)
T d2p7ia1 74 EDAQL-PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANA---VSRQIAVKM-GIISHNSA------V 142 (225)
T ss_dssp GGCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTC---HHHHHHHHT-TSSSSTTC------C
T ss_pred ccccc-ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCccc---HHHHHHHHh-hhhhhhhh------c
Confidence 88765 468999999999999999999999998 799999999975443221 111111111 00000000 0
Q ss_pred chhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEE
Q 036563 241 SYQYLVESVRRFPPQEKFAAMISDAGFQKVEYEN 274 (288)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 274 (288)
..........+.++.++++++++++||+++....
T Consensus 143 ~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~~ 176 (225)
T d2p7ia1 143 TEAEFAHGHRCTYALDTLERDASRAGLQVTYRSG 176 (225)
T ss_dssp CHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred CccccceeeeeccCHHHHHHHHHHCCCEEEEEEE
Confidence 0001111123466899999999999999888654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=8.3e-19 Score=151.97 Aligned_cols=173 Identities=18% Similarity=0.154 Sum_probs=131.2
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+.+.+.+..+++.+|||||||.|.++..+++..+ ++++|+++|+++++.++++....++.
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g------------------~~v~git~s~~q~~~a~~~~~~~~l~- 110 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD------------------VNVIGLTLSENQYAHDKAMFDEVDSP- 110 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC------------------CEEEEEESCHHHHHHHHHHHHHSCCS-
T ss_pred HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC------------------cceeeccchHHHHHHHHHHHHhhccc-
Confidence 36778889999999999999999999999999874 89999999999999999999988887
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccC---------HHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHH
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH---------IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDY 222 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~---------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~ 222 (288)
.++.+...|.. +.+++||.|++...++|+.+ ...+++++.++|||||++++..++.++..........
T Consensus 111 ~~v~~~~~d~~---~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~ 187 (291)
T d1kpia_ 111 RRKEVRIQGWE---EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLT 187 (291)
T ss_dssp SCEEEEECCGG---GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCC
T ss_pred hhhhhhhhccc---ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCC
Confidence 67888888764 34678999999999999865 4789999999999999999988877654432211000
Q ss_pred h---hccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC
Q 036563 223 Y---SFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277 (288)
Q Consensus 223 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 277 (288)
. .....+.+.+.+... -.+++..++...++++||++..++++..
T Consensus 188 ~p~~~~~~~~fi~kyiFpg-----------g~lps~~~~~~~~e~~gl~v~~~~~~~~ 234 (291)
T d1kpia_ 188 SPMSLLRFIKFILTEIFPG-----------GRLPRISQVDYYSSNAGWKVERYHRIGA 234 (291)
T ss_dssp CCHHHHHHHHHHHHHTCTT-----------CCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CchhhcccchHHHHHhcCC-----------CCCCCHHHHHhhhcccccccceeeeccc
Confidence 0 000000011111110 1256889999999999999999988743
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.82 E-value=9.8e-20 Score=151.58 Aligned_cols=106 Identities=28% Similarity=0.390 Sum_probs=93.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
+++.+|||||||+|.++..+++. +.+++|+|+|++|++.|+++....+ .++.++.+|+
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~-------------------~~~v~giD~S~~~i~~ak~~~~~~~---~~~~~~~~d~ 93 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY-------------------GFEVVGVDISEDMIRKAREYAKSRE---SNVEFIVGDA 93 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT-------------------TCEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCT
T ss_pred CCCCEEEEECCCcchhhhhHhhh-------------------hcccccccccccchhhhhhhhcccc---cccccccccc
Confidence 35679999999999999998875 3789999999999999999887765 4678899999
Q ss_pred ccCCCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEecc
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
.++++++++||+|++..+++|++ ++.++|+++.++|||||.+++...+
T Consensus 94 ~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 94 RKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp TSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 99999999999999999999986 6778999999999999999876543
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.81 E-value=5.8e-19 Score=152.38 Aligned_cols=171 Identities=16% Similarity=0.159 Sum_probs=126.6
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+.+.+..+++.+|||||||+|.++..+++..+ ++|+++|+|+++++.++++....++. .
T Consensus 42 ~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g------------------~~v~gi~ls~~q~~~a~~~~~~~~l~-~ 102 (280)
T d2fk8a1 42 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD------------------VNVIGLTLSKNQHARCEQVLASIDTN-R 102 (280)
T ss_dssp HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC------------------CEEEEEESCHHHHHHHHHHHHTSCCS-S
T ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCc------------------eeEEEecchHHHHHHHHHHHHhhccc-c
Confidence 5677888899999999999999999999988863 89999999999999999999988876 6
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCChHHHHH---HHHHhhccc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDIPVFKE---LYDYYSFSV 227 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~---~~~~~~~~~ 227 (288)
++.+...|...+ +++||.|++..+++|+.+ ...+++++.++|||||.+++.+........... .........
T Consensus 103 ~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 179 (280)
T d2fk8a1 103 SRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARF 179 (280)
T ss_dssp CEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHH
T ss_pred chhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccc
Confidence 788888887655 358999999999999964 488999999999999999986654433221110 000000000
Q ss_pred cccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 228 IPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
.+.+.+.+... -.+++.+++.++++++||++++++++.
T Consensus 180 ~dfI~kyifPg-----------g~lPS~~~l~~~~e~aGf~v~~~~~~~ 217 (280)
T d2fk8a1 180 IKFIVTEIFPG-----------GRLPSTEMMVEHGEKAGFTVPEPLSLR 217 (280)
T ss_dssp HHHHHHHTSTT-----------CCCCCHHHHHHHHHHTTCBCCCCEECH
T ss_pred cchhhhhccCC-----------CcccchHhhhhhHHhhccccceeeecc
Confidence 00111111111 025688999999999999999887753
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.81 E-value=1.2e-18 Score=148.62 Aligned_cols=164 Identities=20% Similarity=0.223 Sum_probs=123.5
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.+.++.....+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++++...++. +
T Consensus 71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~-----------------P~~~~~~~Dl-p~~~~~a~~~~~~~~~~-~ 131 (256)
T d1qzza2 71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRA-----------------PHLRGTLVEL-AGPAERARRRFADAGLA-D 131 (256)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-----------------TTCEEEEEEC-HHHHHHHHHHHHHTTCT-T
T ss_pred HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhh-----------------cCcEEEEecC-hHHHHHHHHHHhhcCCc-c
Confidence 455666776777899999999999999999998 5789999997 88999999999888776 7
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEEEeccCCChHHH----HHHHHHhhcc
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLCLELSHVDIPVF----KELYDYYSFS 226 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~----~~~~~~~~~~ 226 (288)
++.+..+|+.. +.+ ..+|+|++.+++|++++. ..+|+++++.|+|||+++|++...+..... ....+...
T Consensus 132 ri~~~~~d~~~-~~p-~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~m-- 207 (256)
T d1qzza2 132 RVTVAEGDFFK-PLP-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRM-- 207 (256)
T ss_dssp TEEEEECCTTS-CCS-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHH--
T ss_pred eeeeeeeeccc-ccc-ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHH--
Confidence 89999999765 333 359999999999999764 568999999999999999998754432211 11111110
Q ss_pred ccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeC
Q 036563 227 VIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVG 277 (288)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~ 277 (288)
+...+ . +..|.++|+++|+++||++++......
T Consensus 208 -l~~~~------g-----------~~rt~~e~~~ll~~AGf~~~~~~~~~~ 240 (256)
T d1qzza2 208 -LTFMG------G-----------RVRTRDEVVDLAGSAGLALASERTSGS 240 (256)
T ss_dssp -HHHHS------C-----------CCCCHHHHHHHHHTTTEEEEEEEEECC
T ss_pred -HhhCC------C-----------ccCCHHHHHHHHHHCCCceeEEEEeCC
Confidence 00000 0 123789999999999999999887643
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.81 E-value=6.5e-19 Score=152.34 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=99.9
Q ss_pred HHHHHhhc-CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 72 KDRLVSKL-NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 72 ~~~~~~~l-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
.+.++..+ ...++.+|||+|||+|.++..+++..+ ++.+++|+|+|+.+++.|+++....+
T Consensus 15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~----------------~~~~v~giD~s~~~l~~a~~~~~~~~-- 76 (281)
T d2gh1a1 15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLP----------------EGSKYTGIDSGETLLAEARELFRLLP-- 76 (281)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSC----------------TTCEEEEEECCHHHHHHHHHHHHSSS--
T ss_pred HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCC----------------CCCEEEEEecchhHhhhhhccccccc--
Confidence 34454433 345678999999999999999988763 35789999999999999999987765
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.++.+..+|+.+++++ ++||+|++..+++|++++..+|+++.++|||||.+++.+.
T Consensus 77 -~~~~f~~~d~~~~~~~-~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 77 -YDSEFLEGDATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp -SEEEEEESCTTTCCCS-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred -cccccccccccccccc-CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 3789999999988765 4799999999999999999999999999999999998774
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.81 E-value=1.2e-19 Score=153.79 Aligned_cols=137 Identities=21% Similarity=0.333 Sum_probs=107.2
Q ss_pred HHHhHhhHHHhhhhhhhhh--hhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCC
Q 036563 47 NVFSSVAKNYDLMNDLMSG--GLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEE 124 (288)
Q Consensus 47 ~~~~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (288)
++|+.+++.||...+.... .....+...+.......++.+|||+|||+|..+..+++..
T Consensus 3 ~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~------------------- 63 (251)
T d1wzna1 3 ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG------------------- 63 (251)
T ss_dssp GGGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT-------------------
T ss_pred chhHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccc-------------------
Confidence 5678888888875332211 1122233455566666677899999999999999988863
Q ss_pred ceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEecc-ccccc--cCHHHHHHHHHhhccCCc
Q 036563 125 TRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAF-GIRNV--THIEKALAEAYRVLKRGG 201 (288)
Q Consensus 125 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~-~l~~~--~~~~~~l~~~~~~L~pgG 201 (288)
.+++|+|+|++|++.|+++....+ .++.+.++|+++++++ ++||+|+|.+ ++++. ++...+|++++++|||||
T Consensus 64 ~~v~gvD~s~~mi~~a~~~~~~~~---~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG 139 (251)
T d1wzna1 64 YEVVGLDLHEEMLRVARRKAKERN---LKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGG 139 (251)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTT---CCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred eEEEEEeecccccccccccccccc---ccchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCc
Confidence 789999999999999999988765 3699999999999876 4899999974 56665 356789999999999999
Q ss_pred EEEEE
Q 036563 202 RFLCL 206 (288)
Q Consensus 202 ~l~i~ 206 (288)
.+++.
T Consensus 140 ~lii~ 144 (251)
T d1wzna1 140 VFITD 144 (251)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99864
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.78 E-value=4e-18 Score=139.69 Aligned_cols=112 Identities=19% Similarity=0.159 Sum_probs=95.1
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
..+...++++|||||||+|..+..+++.. .+++++|+|+.|++.++++....+++ ++++
T Consensus 24 ~~~~~~~~grvLDiGcG~G~~~~~la~~g-------------------~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~ 82 (198)
T d2i6ga1 24 AAAKVVAPGRTLDLGCGNGRNSLYLAANG-------------------YDVTAWDKNPASMANLERIKAAEGLD--NLQT 82 (198)
T ss_dssp HHHTTSCSCEEEEETCTTSHHHHHHHHTT-------------------CEEEEEESCHHHHHHHHHHHHHTTCT--TEEE
T ss_pred HHcccCCCCcEEEECCCCCHHHHHHHHHh-------------------hhhccccCcHHHHHHHHHHhhhcccc--chhh
Confidence 33444445699999999999999998873 79999999999999999998887774 7899
Q ss_pred EEcccccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccC
Q 036563 157 VEGDAEALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 157 ~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
...|+....+ +++||+|++..+++|++. ..++++++.++|+|||.+++.....
T Consensus 83 ~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 83 DLVDLNTLTF-DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp EECCTTTCCC-CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred hheecccccc-cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 9999988765 568999999999999864 4679999999999999999876543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.78 E-value=2.6e-18 Score=146.13 Aligned_cols=180 Identities=18% Similarity=0.211 Sum_probs=120.1
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.++... .+++.+|||+|||+|..+..+++.. ..+|+|+|+|+.|++.|+++....+.. .
T Consensus 15 ~~lI~~~-~~~~~~VLDlGCG~G~~~~~~~~~~------------------~~~v~GiD~S~~~l~~A~~r~~~~~~~-~ 74 (252)
T d1ri5a_ 15 ACLIRLY-TKRGDSVLDLGCGKGGDLLKYERAG------------------IGEYYGVDIAEVSINDARVRARNMKRR-F 74 (252)
T ss_dssp HHHHHHH-CCTTCEEEEETCTTTTTHHHHHHHT------------------CSEEEEEESCHHHHHHHHHHHHTSCCS-S
T ss_pred HHHHHHh-CCCcCEEEEecccCcHHHHHHHHcC------------------CCeEEEecCCHHHHHHHHHHHHhcCCC-c
Confidence 3444433 2457899999999999988887763 368999999999999999988776554 6
Q ss_pred ceEEEEcccccCCC-CCCCeeEEEecccccccc----CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcc-
Q 036563 153 SLLWVEGDAEALCF-EDSTMDGYTIAFGIRNVT----HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFS- 226 (288)
Q Consensus 153 ~v~~~~~d~~~~~~-~~~~~D~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~- 226 (288)
++.+.++|+...++ .+++||+|+|.+++||.. +...+++++.++|+|||++++... +...+..........
T Consensus 75 ~v~f~~~D~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~---~~~~i~~~~~~~~~~~ 151 (252)
T d1ri5a_ 75 KVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP---SRDVILERYKQGRMSN 151 (252)
T ss_dssp EEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE---CHHHHHHHHHHTCCBC
T ss_pred ceEEEEcchhhhcccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec---CHHHHHHHHHhcccCC
Confidence 89999999876654 466899999999999874 345789999999999999986432 333332222211100
Q ss_pred -c----cccccccccCCCcchhh-hHHH----HhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 227 -V----IPAIGELVAGDRGSYQY-LVES----VRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 227 -~----~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
. ..............|.+ +.+. ...+.+.+.+.++++++||+.++..++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~E~l~~~~~l~~~~~~~g~~lv~~~~f 210 (252)
T d1ri5a_ 152 DFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 210 (252)
T ss_dssp SSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred ceEEEecccccCCcCcCceEEEEEcccccccCcccccCHHHHHHHHHHcCCEEEEEecH
Confidence 0 00000111111111111 1111 122456789999999999999887654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.75 E-value=1.2e-17 Score=140.00 Aligned_cols=146 Identities=16% Similarity=0.167 Sum_probs=112.9
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
+.++..|+.+|||+|||+|.++..+++.. +.+.|+++|+|+.|++.++.+.... +++..
T Consensus 68 ~~l~ikpG~~VLDlGcGsG~~~~~la~~~-----------------~~g~V~aVDiS~~~i~~a~~~a~~~----~ni~~ 126 (230)
T d1g8sa_ 68 KVMPIKRDSKILYLGASAGTTPSHVADIA-----------------DKGIVYAIEYAPRIMRELLDACAER----ENIIP 126 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHT-----------------TTSEEEEEESCHHHHHHHHHHTTTC----TTEEE
T ss_pred HhCCCCCCCEEEEeCEEcCHHHHHHHHhC-----------------CCCEEEEEeCcHHHHHHHHHHHhhh----cccce
Confidence 35677899999999999999999999976 5689999999999999998887655 57888
Q ss_pred EEcccccCC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccc
Q 036563 157 VEGDAEALC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELV 235 (288)
Q Consensus 157 ~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (288)
+..|..... +.+..+|++++...+++..+...++.++++.|||||.+++.........
T Consensus 127 i~~d~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~--------------------- 185 (230)
T d1g8sa_ 127 ILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDV--------------------- 185 (230)
T ss_dssp EECCTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCS---------------------
T ss_pred EEEeeccCcccccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCC---------------------
Confidence 888877653 4455677777777788888889999999999999999988654321100
Q ss_pred cCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEee
Q 036563 236 AGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLV 276 (288)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 276 (288)
...+ . . ..+++.+.|+++||++++..++.
T Consensus 186 ~~~~--~----~------~~~e~~~~L~~aGF~ive~idL~ 214 (230)
T d1g8sa_ 186 TKDP--K----E------IFKEQKEILEAGGFKIVDEVDIE 214 (230)
T ss_dssp SSCH--H----H------HHHHHHHHHHHHTEEEEEEEECT
T ss_pred CCCH--H----H------HHHHHHHHHHHcCCEEEEEecCC
Confidence 0000 0 0 23567789999999999987764
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.4e-16 Score=137.25 Aligned_cols=161 Identities=16% Similarity=0.205 Sum_probs=110.9
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce--EEEE
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL--LWVE 158 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v--~~~~ 158 (288)
.++..+|||||||+|.++..+++.+..... .....++++|+|+.|++.++++....... +++ .+..
T Consensus 38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~-----------~~~~~~~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~ 105 (280)
T d1jqea_ 38 TKSEIKILSIGGGAGEIDLQILSKVQAQYP-----------GVCINNEVVEPSAEQIAKYKELVAKISNL-ENVKFAWHK 105 (280)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHST-----------TCEEEEEEECCCHHHHHHHHHHHTTCCSC-TTEEEEEEC
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhhhcc-----------CCceEEEEEeCcHHHHHHHHHHHhhcccc-ccccccchh
Confidence 344558999999999999988876531110 02357899999999999999987654221 233 4445
Q ss_pred ccccc------CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhcccccccc
Q 036563 159 GDAEA------LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIG 232 (288)
Q Consensus 159 ~d~~~------~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
.+++. .+.++++||+|++.++++|++++..+|++++++|+|||.+++...... .. ...++..+...
T Consensus 106 ~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~-~~-~~~l~~~~~~~------ 177 (280)
T d1jqea_ 106 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS-SG-WDKLWKKYGSR------ 177 (280)
T ss_dssp SCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT-SH-HHHHHHHHGGG------
T ss_pred hhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCc-ch-HHHHHHHHHHh------
Confidence 54432 245678999999999999999999999999999999999998765543 22 22333322100
Q ss_pred ccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEE
Q 036563 233 ELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEY 272 (288)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 272 (288)
..... ...+.+.+++.++|++.||+.+..
T Consensus 178 -~~~~~----------~~~~~~~~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 178 -FPQDD----------LCQYITSDDLTQMLDNLGLKYECY 206 (280)
T ss_dssp -SCCCT----------TSCCCCHHHHHHHHHHHTCCEEEE
T ss_pred -cCCCc----------ccccCCHHHHHHHHHHCCCceEEE
Confidence 00001 112457889999999999986544
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2e-18 Score=146.74 Aligned_cols=149 Identities=12% Similarity=0.027 Sum_probs=103.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC---------
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK--------- 152 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~--------- 152 (288)
.++.+|||+|||+|..+..++... ..+|+|+|+|+.|++.+++++........
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~------------------~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~ 111 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDS------------------FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFAC 111 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT------------------EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccc------------------cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHH
Confidence 456799999999998876665543 25799999999999999998765432100
Q ss_pred ------------------ce-EEEEccc----ccCCCCCCCeeEEEecccccccc----CHHHHHHHHHhhccCCcEEEE
Q 036563 153 ------------------SL-LWVEGDA----EALCFEDSTMDGYTIAFGIRNVT----HIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 153 ------------------~v-~~~~~d~----~~~~~~~~~~D~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i 205 (288)
.+ .....+. ...+++.++||+|++.++++|+. +...+++++.++|||||++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~ 191 (257)
T d2a14a1 112 ELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVT 191 (257)
T ss_dssp HHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred HhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEE
Confidence 00 1111111 11245678899999999999885 566799999999999999998
Q ss_pred EeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 206 LELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
.+....... . .. . ..+ ....++.++++++|++|||+++++...
T Consensus 192 ~~~~~~~~~---------~-----~~------~-~~~------~~~~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 192 TVTLRLPSY---------M-----VG------K-REF------SCVALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp EEESSCCEE---------E-----ET------T-EEE------ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred EEecccccc---------e-----ec------c-ccc------cccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 765432110 0 00 0 000 012458999999999999999888644
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.72 E-value=5.6e-17 Score=131.55 Aligned_cols=116 Identities=22% Similarity=0.272 Sum_probs=100.7
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+..+..++..+.+.++.+|||+|||+|.++..++... .+|+++|+++++++.+++++...+
T Consensus 19 ~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~-------------------~~V~avD~~~~~l~~a~~n~~~~g 79 (186)
T d1l3ia_ 19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-------------------RRVYAIDRNPEAISTTEMNLQRHG 79 (186)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-------------------SEEEEEESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccc-------------------eEEEEecCCHHHHHHHHHHHHHcC
Confidence 4556677788899999999999999999999887753 789999999999999999999998
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+. ++++++++|+.+.......||+|++....+ +...+++.+.+.|||||++++..
T Consensus 80 l~-~~v~~~~gda~~~~~~~~~~D~v~~~~~~~---~~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 80 LG-DNVTLMEGDAPEALCKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp CC-TTEEEEESCHHHHHTTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CC-cceEEEECchhhcccccCCcCEEEEeCccc---cchHHHHHHHHHhCcCCEEEEEe
Confidence 87 799999999988766677899999987654 45778999999999999998643
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.70 E-value=1.5e-16 Score=129.80 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=99.1
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+.+++.+...++.+|||+|||+|.++..+++.. .+++++|+|+.+++.+++++...++..
T Consensus 41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~-------------------~~v~~iD~s~~~i~~a~~n~~~~~l~~ 101 (194)
T d1dusa_ 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEV-------------------KSTTMADINRRAIKLAKENIKLNNLDN 101 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-------------------SEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc-------------------cccceeeeccccchhHHHHHHHhCCcc
Confidence 3557788888889999999999999999887753 689999999999999999998888765
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccC-HHHHHHHHHhhccCCcEEEEEe
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH-IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~-~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.++++..+|..+ .+++++||+|+++.++++..+ ...+++++.+.|+|||.++++.
T Consensus 102 ~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 102 YDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp SCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEEcchhh-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 679999999876 456778999999999887665 4678999999999999988653
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.68 E-value=3e-16 Score=133.04 Aligned_cols=132 Identities=23% Similarity=0.246 Sum_probs=103.8
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..+++. +.+++++|+|+.|++.|+++...+++ ++++..+|+
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~-------------------g~~V~gvDis~~av~~A~~na~~n~~---~~~~~~~d~ 176 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKL-------------------GGKALGVDIDPMVLPQAEANAKRNGV---RPRFLEGSL 176 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-------------------TCEEEEEESCGGGHHHHHHHHHHTTC---CCEEEESCH
T ss_pred CccCEEEEcccchhHHHHHHHhc-------------------CCEEEEEECChHHHHHHHHHHHHcCC---ceeEEeccc
Confidence 46889999999999999877664 37899999999999999999988876 467888887
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHHHhhccccccccccccCCCcc
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGS 241 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (288)
... .+.++||+|+++...+ ....+++++.++|||||++++.++...
T Consensus 177 ~~~-~~~~~fD~V~ani~~~---~l~~l~~~~~~~LkpGG~lilSgil~~------------------------------ 222 (254)
T d2nxca1 177 EAA-LPFGPFDLLVANLYAE---LHAALAPRYREALVPGGRALLTGILKD------------------------------ 222 (254)
T ss_dssp HHH-GGGCCEEEEEEECCHH---HHHHHHHHHHHHEEEEEEEEEEEEEGG------------------------------
T ss_pred ccc-ccccccchhhhccccc---cHHHHHHHHHHhcCCCcEEEEEecchh------------------------------
Confidence 653 4567899999875543 356788999999999999997543110
Q ss_pred hhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEE
Q 036563 242 YQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAI 282 (288)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~ 282 (288)
..+++.+.++++||++++... .++.+.+
T Consensus 223 ------------~~~~v~~~~~~~Gf~~~~~~~-~~~Wv~l 250 (254)
T d2nxca1 223 ------------RAPLVREAMAGAGFRPLEEAA-EGEWVLL 250 (254)
T ss_dssp ------------GHHHHHHHHHHTTCEEEEEEE-ETTEEEE
T ss_pred ------------hHHHHHHHHHHCCCEEEEEEE-ECCEEEE
Confidence 356788999999999988765 3455544
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.68 E-value=1.6e-16 Score=134.23 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=92.4
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..++.+++..|+.+|||+|||+|.++..+++..+ +.++++++|.++++++.|++++...+.. .
T Consensus 75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~----------------~~g~V~~vD~~e~~~~~A~~n~~~~~~~-~ 137 (250)
T d1yb2a1 75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALN----------------GKGTLTVVERDEDNLKKAMDNLSEFYDI-G 137 (250)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHT----------------TSSEEEEECSCHHHHHHHHHHHHTTSCC-T
T ss_pred HHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhC----------------CCcEEEEEECCHHHHHHHHHHHHHhcCC-C
Confidence 4567788899999999999999999999999875 5789999999999999999999876544 6
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.+..+|+.+. ++++.||.|++ +++++..++.++.+.|||||++++.
T Consensus 138 nv~~~~~Di~~~-~~~~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~ 185 (250)
T d1yb2a1 138 NVRTSRSDIADF-ISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFY 185 (250)
T ss_dssp TEEEECSCTTTC-CCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEE
T ss_pred ceEEEEeeeecc-cccceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEE
Confidence 899999998765 45678999986 4567888999999999999999863
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=3.1e-16 Score=134.31 Aligned_cols=105 Identities=21% Similarity=0.303 Sum_probs=89.1
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
.+...++ .++.+|||+|||+|.++..+++.. ++.+++|+|+|+.|++.++++. ++
T Consensus 76 ~l~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~-----------------~~~~~~giD~s~~~~~~a~~~~-------~~ 130 (268)
T d1p91a_ 76 QLRERLD-DKATAVLDIGCGEGYYTHAFADAL-----------------PEITTFGLDVSKVAIKAAAKRY-------PQ 130 (268)
T ss_dssp HHHHHSC-TTCCEEEEETCTTSTTHHHHHHTC-----------------TTSEEEEEESCHHHHHHHHHHC-------TT
T ss_pred HHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHC-----------------CCCEEEEecchHhhhhhhhccc-------cc
Confidence 3444444 456799999999999999999986 4689999999999999998763 57
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+.+.++|+.++++++++||+|++.+++++ ++++.|+|||||.+++.....
T Consensus 131 ~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 131 VTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp SEEEECCTTSCSBCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECT
T ss_pred ccceeeehhhccCCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCC
Confidence 89999999999999999999999888776 567999999999999876644
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.6e-17 Score=137.94 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=90.0
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+.+...+. .++++|||||||+|..+..+++.. ..+++++|+|+.+++.++++....+
T Consensus 43 ~~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~------------------~~~v~~id~s~~~~~~a~~~~~~~~--- 100 (229)
T d1zx0a1 43 MHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAP------------------IDEHWIIECNDGVFQRLRDWAPRQT--- 100 (229)
T ss_dssp HHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSC------------------EEEEEEEECCHHHHHHHHHHGGGCS---
T ss_pred HHHHHHhhc-cCCCeEEEeeccchHHHHHHHHcC------------------CCeEEEeCCCHHHHHHHHHHhhhcc---
Confidence 334444444 457899999999999999988764 3789999999999999999987764
Q ss_pred CceEEEEcccccC--CCCCCCeeEEEe-----ccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 152 KSLLWVEGDAEAL--CFEDSTMDGYTI-----AFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 152 ~~v~~~~~d~~~~--~~~~~~~D~v~~-----~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
.++..+..++... .+++++||.|+. ...++|..+...++++++++|||||.|++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 101 HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred cccccccccccccccccccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence 4677787876543 567788999884 55567777889999999999999999986
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=8.6e-16 Score=131.17 Aligned_cols=150 Identities=14% Similarity=0.105 Sum_probs=102.5
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC---------
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD--------- 151 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~--------- 151 (288)
...+.+|||+|||+|.+....+... ..+|+++|+|+.|++.+++++......-
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~------------------~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~ 113 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSH------------------FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHA 113 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGG------------------CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhccc------------------CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhh
Confidence 3457899999999997765444432 2689999999999999998765432110
Q ss_pred -------------------CceEEEEcccccC------CCCCCCeeEEEecccccccc----CHHHHHHHHHhhccCCcE
Q 036563 152 -------------------KSLLWVEGDAEAL------CFEDSTMDGYTIAFGIRNVT----HIEKALAEAYRVLKRGGR 202 (288)
Q Consensus 152 -------------------~~v~~~~~d~~~~------~~~~~~~D~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~ 202 (288)
........|+... +...++||+|++.++++++. +..++|+++.++|||||.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~ 193 (263)
T d2g72a1 114 CLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGH 193 (263)
T ss_dssp HHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCE
Confidence 0012334454332 23456799999999999885 467899999999999999
Q ss_pred EEEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEe
Q 036563 203 FLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENL 275 (288)
Q Consensus 203 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~ 275 (288)
|++.+....... ..+... + ....++.++++++|+++||++++.+..
T Consensus 194 li~~~~~~~~~~--------------------~~~~~~-~------~~~~~t~e~v~~~l~~aGf~v~~~~~~ 239 (263)
T d2g72a1 194 LLLIGALEESWY--------------------LAGEAR-L------TVVPVSEEEVREALVRSGYKVRDLRTY 239 (263)
T ss_dssp EEEEEEESCCEE--------------------EETTEE-E------ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred EEEecccCCccc--------------------ccCCcc-c------ccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 998654321100 000000 0 012458999999999999999887644
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=5.5e-16 Score=131.75 Aligned_cols=116 Identities=16% Similarity=0.269 Sum_probs=101.5
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc-
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER- 147 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~- 147 (288)
..-...++..+...|+++|||+|||+|.++..++...+ +.++++++|+++++++.|++++...
T Consensus 82 pkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vg----------------p~G~V~~~d~~~~~~~~Ar~n~~~~~ 145 (264)
T d1i9ga_ 82 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVG----------------PAGQVISYEQRADHAEHARRNVSGCY 145 (264)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC----------------TTSEEEEECSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhC----------------CCcEEEEecCCHHHHHHHHHhhhhhc
Confidence 33445788899999999999999999999999999986 6789999999999999999988754
Q ss_pred -CCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 148 -GYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 148 -~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
... .++.+..+|+.+.+++++.||.|++ +++++..++.++.++|||||.+++.
T Consensus 146 ~~~~-~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~ 199 (264)
T d1i9ga_ 146 GQPP-DNWRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVY 199 (264)
T ss_dssp TSCC-TTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEE
T ss_pred cCCC-ceEEEEecccccccccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEE
Confidence 222 6899999999988888899999986 5688999999999999999999864
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.66 E-value=3.9e-16 Score=131.69 Aligned_cols=169 Identities=15% Similarity=0.122 Sum_probs=121.1
Q ss_pred HHHHhhcC-CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 73 DRLVSKLN-PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 73 ~~~~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
+.+++.++ .....+|||||||+|.++..+++.+ |+.+++++|. |..++ .....
T Consensus 70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~-----------------P~l~~~v~Dl-p~vi~-------~~~~~- 123 (244)
T d1fp1d2 70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKY-----------------PLIKGINFDL-PQVIE-------NAPPL- 123 (244)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-----------------TTCEEEEEEC-HHHHT-------TCCCC-
T ss_pred HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHC-----------------CCCeEEEecc-hhhhh-------ccCCC-
Confidence 45566666 3555789999999999999999998 6899999997 44432 22222
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCCh---HHHHHHHHHhhcc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVDI---PVFKELYDYYSFS 226 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~---~~~~~~~~~~~~~ 226 (288)
.+++++.+|+.+. .+ ..|++++.+++|++++ ...+|+++++.|+|||++++.|...++. +........+...
T Consensus 124 ~ri~~~~gd~~~~-~p--~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~ 200 (244)
T d1fp1d2 124 SGIEHVGGDMFAS-VP--QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNL 200 (244)
T ss_dssp TTEEEEECCTTTC-CC--CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHH
T ss_pred CCeEEecCCcccc-cc--cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHH
Confidence 6899999998653 33 4699999999999976 4578999999999999999998865432 1111111111000
Q ss_pred ccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEeee
Q 036563 227 VIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGLK 287 (288)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~k 287 (288)
+.....+ . -.|.++|+++|++|||+.+++.....+...++-++|
T Consensus 201 ----m~~~~~g--~-----------ert~~e~~~ll~~AGF~~v~v~~~~~~~~~viE~~K 244 (244)
T d1fp1d2 201 ----MFITVGG--R-----------ERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 244 (244)
T ss_dssp ----HHHHHSC--C-----------CEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred ----HHhhCCC--c-----------CCCHHHHHHHHHHcCCCceEEEecCCCCEEEEEEeC
Confidence 0000011 1 126899999999999999999888788888888776
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.66 E-value=1.5e-16 Score=129.05 Aligned_cols=117 Identities=13% Similarity=0.024 Sum_probs=94.0
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC----
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP---- 150 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---- 150 (288)
....+..+|+.+|||+|||+|..+..++++ +.+|+|+|+|++|++.++++.......
T Consensus 12 ~~~~l~~~~~~rvLd~GCG~G~~a~~la~~-------------------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~ 72 (201)
T d1pjza_ 12 YWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-------------------GYHVVGAELSEAAVERYFTERGEQPHITSQG 72 (201)
T ss_dssp HHHHHCCCTTCEEEETTTCCSHHHHHHHHH-------------------CCEEEEEEECHHHHHHHHHHHCSCSEEEEET
T ss_pred HHHHcCCCCCCEEEEecCcCCHHHHHHHHc-------------------CCceEeecccHHHHHHHHHHhccccchhhhh
Confidence 345677788999999999999999999986 389999999999999999987543210
Q ss_pred ------CCceEEEEcccccCC-CCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccC
Q 036563 151 ------DKSLLWVEGDAEALC-FEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 151 ------~~~v~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
...+.+..+|+..++ .....||+|++..+++++.+ ....++++.+.|||||.+++.....
T Consensus 73 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 73 DFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp TEEEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred hhhhccccccceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence 134567788877664 33467999999999999863 5789999999999999998765544
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.66 E-value=3.5e-16 Score=129.00 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=89.0
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.++.+|+.+|||+|||+|..+..+++.. +..+|+++|+|+.|++.++++.... +++.++
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v-----------------~~g~V~gvDis~~~i~~a~~~a~~~----~ni~~i 109 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIV-----------------DEGIIYAVEYSAKPFEKLLELVRER----NNIIPL 109 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHT-----------------TTSEEEEECCCHHHHHHHHHHHHHC----SSEEEE
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhc-----------------cCCeEEEEeCCHHHHHHHHHHhhcc----CCceEE
Confidence 5678899999999999999999999987 3579999999999999999988776 589999
Q ss_pred EcccccCCCCCC---CeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 158 EGDAEALCFEDS---TMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 158 ~~d~~~~~~~~~---~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
..|+........ .+|++++ .+.+..+...+++++.+.|||||.+++...
T Consensus 110 ~~d~~~~~~~~~~~~~vd~v~~--~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 110 LFDASKPWKYSGIVEKVDLIYQ--DIAQKNQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp CSCTTCGGGTTTTCCCEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeeccCccccccccceEEEEEe--cccChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence 999887643333 3554443 355667788899999999999999998653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.4e-15 Score=125.66 Aligned_cols=124 Identities=12% Similarity=-0.036 Sum_probs=99.9
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
+..+.+.+.+.+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++.....
T Consensus 30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~-------------------G~~V~gvD~S~~ai~~a~~~~~~~ 90 (229)
T d2bzga1 30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR-------------------GHSVVGVEISELGIQEFFTEQNLS 90 (229)
T ss_dssp CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT-------------------TCEEEEECSCHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC-------------------CCcEEEEeCCHHHHHHHHHHhhcc
Confidence 3445556667777778899999999999999999886 389999999999999998875432
Q ss_pred CC---------------CCCceEEEEcccccCC-CCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEecc
Q 036563 148 GY---------------PDKSLLWVEGDAEALC-FEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 148 ~~---------------~~~~v~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+. ...++.+.++|+..++ ...+.||+|+...+++++. +....++++.++|+|||.+++..+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~ 170 (229)
T d2bzga1 91 YSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLS 170 (229)
T ss_dssp EEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred ccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence 10 0146889999988764 5567899999999999885 5678999999999999998876654
Q ss_pred C
Q 036563 210 H 210 (288)
Q Consensus 210 ~ 210 (288)
.
T Consensus 171 ~ 171 (229)
T d2bzga1 171 Y 171 (229)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=1.1e-15 Score=126.38 Aligned_cols=111 Identities=23% Similarity=0.313 Sum_probs=95.9
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
...+++.+..+++.+|||||||+|..+..+++..+ +...|+++|+++.+++.+++++...+.
T Consensus 64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~----------------~~g~V~~id~~~~~~~~a~~~~~~~~~-- 125 (213)
T d1dl5a1 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVG----------------EKGLVVSVEYSRKICEIAKRNVERLGI-- 125 (213)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC----------------TTCEEEEEESCHHHHHHHHHHHHHTTC--
T ss_pred hHHHHHhhhccccceEEEecCccchhHHHHHHHhC----------------CCCcEEEeecchhhHHHhhhhHhhhcc--
Confidence 34577888899999999999999999999999875 568999999999999999999988877
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.++.+..+|.......+++||.|++..+++++++ ++.+.|||||++++.
T Consensus 126 ~n~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 126 ENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp CSEEEEESCGGGCCGGGCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEE
T ss_pred cccccccCchHHccccccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEE
Confidence 4888999998877666778999999999988753 467789999999863
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=1.6e-15 Score=129.33 Aligned_cols=114 Identities=15% Similarity=0.264 Sum_probs=98.0
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.-...++..+...|+.+|||+|||+|.++..+++..+ +.++++++|+++.+++.|++++...++
T Consensus 90 kd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~----------------~~G~V~~vD~~~~~~~~A~~~~~~~g~ 153 (266)
T d1o54a_ 90 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVG----------------SSGKVFAYEKREEFAKLAESNLTKWGL 153 (266)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTT----------------TTCEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhC----------------CCcEEEEEeCCHHHHHHHHHHHHHhcc
Confidence 3345688899999999999999999999999999875 678999999999999999999998887
Q ss_pred CCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 150 PDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
. .++.+...|+.. .+....+|.|+. +++++..+++++.++|||||.+++.
T Consensus 154 ~-~~v~~~~~d~~~-~~~~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~ 203 (266)
T d1o54a_ 154 I-ERVTIKVRDISE-GFDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATV 203 (266)
T ss_dssp G-GGEEEECCCGGG-CCSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEE
T ss_pred c-cCcEEEeccccc-cccccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEE
Confidence 6 688888888654 345567998864 6788999999999999999999864
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.63 E-value=3.5e-15 Score=124.30 Aligned_cols=110 Identities=22% Similarity=0.186 Sum_probs=90.6
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
+.++..|+.+|||+|||+|.++.++++..+ +.++|+++|+++.|++.++++.... +++..
T Consensus 67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG----------------~~G~V~aVD~s~~~l~~a~~~a~~~----~~~~~ 126 (227)
T d1g8aa_ 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVG----------------WEGKIFGIEFSPRVLRELVPIVEER----RNIVP 126 (227)
T ss_dssp CCCCCCTTCEEEEETTTSTTHHHHHHHHHC----------------TTSEEEEEESCHHHHHHHHHHHSSC----TTEEE
T ss_pred cccccCCCCEEEEeccCCCHHHHHHHHHhC----------------CCCEEEEEeCcHHHHHHHHHHHHhc----CCceE
Confidence 456678999999999999999999999986 6799999999999999999887665 57788
Q ss_pred EEcccccC---CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 157 VEGDAEAL---CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 157 ~~~d~~~~---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+..|.... +...+.+|+|++. +.+..+...+++++.+.|||||.++++..
T Consensus 127 i~~d~~~~~~~~~~~~~vD~i~~d--~~~~~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 127 ILGDATKPEEYRALVPKVDVIFED--VAQPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp EECCTTCGGGGTTTCCCEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEECCCcccccccccceEEEEEE--ccccchHHHHHHHHHHhcccCCeEEEEEE
Confidence 88887543 3344678988764 44556778899999999999999987643
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=4e-14 Score=120.76 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=118.7
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+.+.+....... ..+.+|||+|||+|..+..++... |..+++++|+|+.+++.|++++...+
T Consensus 95 E~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~-----------------p~~~v~avDis~~Al~~A~~Na~~~~ 156 (274)
T d2b3ta1 95 ECLVEQALARLP-EQPCRILDLGTGTGAIALALASER-----------------PDCEIIAVDRMPDAVSLAQRNAQHLA 156 (274)
T ss_dssp HHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHC-----------------TTSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred hhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhC-----------------CcceeeeccchhHHHhHHHHHHHHhC
Confidence 334444444444 345789999999999999999987 57999999999999999999999888
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEeccccccccC-------------------------HHHHHHHHHhhccCCcEE
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH-------------------------IEKALAEAYRVLKRGGRF 203 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~-------------------------~~~~l~~~~~~L~pgG~l 203 (288)
+. ++.++.+|... +.++.+||+|+++...-...+ ..++++++.++|+|||.+
T Consensus 157 ~~--~v~~~~~d~~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l 233 (274)
T d2b3ta1 157 IK--NIHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFL 233 (274)
T ss_dssp CC--SEEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEE
T ss_pred cc--cceeeeccccc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEE
Confidence 74 79999999865 345668999999866321110 245788999999999999
Q ss_pred EEEeccCCChHHHHHHHHHhhccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEE
Q 036563 204 LCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIH 283 (288)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~ 283 (288)
++ |... ...+.+.+++++.||..+++.....|.-.++
T Consensus 234 ~l-Eig~------------------------------------------~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v 270 (274)
T d2b3ta1 234 LL-EHGW------------------------------------------QQGEAVRQAFILAGYHDVETCRDYGDNERVT 270 (274)
T ss_dssp EE-ECCS------------------------------------------SCHHHHHHHHHHTTCTTCCEEECTTSSEEEE
T ss_pred EE-EECc------------------------------------------hHHHHHHHHHHHCCCCeEEEEECCCCCceEE
Confidence 85 3221 1346778899999999888888778888877
Q ss_pred Eee
Q 036563 284 SGL 286 (288)
Q Consensus 284 ~~~ 286 (288)
.|+
T Consensus 271 ~~r 273 (274)
T d2b3ta1 271 LGR 273 (274)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.56 E-value=1.9e-14 Score=117.96 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=91.4
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
-.|||||||+|.++..+++.. |+..++|+|+++.++..+.++....+++ |+.++.+|+..+
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~-----------------p~~~~iGiD~~~~~i~~a~~~~~~~~l~--Nv~~~~~Da~~l 91 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQN-----------------PDINYIGIELFKSVIVTAVQKVKDSEAQ--NVKLLNIDADTL 91 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHC-----------------TTSEEEEECSCHHHHHHHHHHHHHSCCS--SEEEECCCGGGH
T ss_pred ceEEEEEecCcHHHHHHHHhC-----------------CCCcEEEeecchHHHHHHHHHHHHHhcc--Cchhcccchhhh
Confidence 379999999999999999997 6799999999999999999999988884 899999999876
Q ss_pred C--CCCCCeeEEEeccccccccCH--------HHHHHHHHhhccCCcEEEEEe
Q 036563 165 C--FEDSTMDGYTIAFGIRNVTHI--------EKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 165 ~--~~~~~~D~v~~~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~ 207 (288)
. ++++++|.|++.+...+.... ..+|+.++++|||||.|.+.+
T Consensus 92 ~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 92 TDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp HHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred hcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 4 778899999998887665432 479999999999999998764
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=7.4e-15 Score=127.03 Aligned_cols=115 Identities=18% Similarity=0.163 Sum_probs=84.5
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC-
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD- 151 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~- 151 (288)
+.+...+...++.+|||+|||+|..+..+++. +.+|+|+|+|++|++.|+++....+...
T Consensus 46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~-------------------g~~v~gvD~S~~ml~~A~~~~~~~~~~~~ 106 (292)
T d1xvaa_ 46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-------------------GFSVTSVDASDKMLKYALKERWNRRKEPA 106 (292)
T ss_dssp HHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT-------------------TCEEEEEESCHHHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc-------------------CCeeeeccCchHHHHHHHHHHHhcccccc
Confidence 44455555556779999999999999999886 3799999999999999998876654320
Q ss_pred -CceEEEEcccccCC---CCCCCeeEEEecc-ccccccC-------HHHHHHHHHhhccCCcEEEEE
Q 036563 152 -KSLLWVEGDAEALC---FEDSTMDGYTIAF-GIRNVTH-------IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 152 -~~v~~~~~d~~~~~---~~~~~~D~v~~~~-~l~~~~~-------~~~~l~~~~~~L~pgG~l~i~ 206 (288)
....+...++.... ...++||+|+|.. +++|+++ ...+|++++++|||||.|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 107 FDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp HHTCEEEECCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cceeeeeeccccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 11234444443221 2346899999764 6777753 567999999999999999863
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.54 E-value=2.1e-14 Score=120.99 Aligned_cols=159 Identities=17% Similarity=0.160 Sum_probs=109.5
Q ss_pred HHHHhhcCC-CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 73 DRLVSKLNP-FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 73 ~~~~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
..+....+. ....+|||||||+|.++..+++.+ |+.+++++|..+ .++. ....
T Consensus 70 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-----------------P~l~~~v~Dlp~-vi~~-------~~~~- 123 (243)
T d1kyza2 70 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKY-----------------PTIKGINFDLPH-VIED-------APSY- 123 (243)
T ss_dssp HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHC-----------------TTSEEEEEECTT-TTTT-------CCCC-
T ss_pred HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHC-----------------CCCeEEEcccHH-hhhh-------cccC-
Confidence 445555544 334689999999999999999998 689999999844 3321 1122
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccC--HHHHHHHHHhhccCCcEEEEEeccCCC---hHHHHH---HHHHh
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH--IEKALAEAYRVLKRGGRFLCLELSHVD---IPVFKE---LYDYY 223 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~---~~~~~~---~~~~~ 223 (288)
++++++.+|+.+ +.|. .|.+++.+++|.+++ ...+|+++++.|+|||.+++++...++ .+.... ..+..
T Consensus 124 ~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ 200 (243)
T d1kyza2 124 PGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVI 200 (243)
T ss_dssp TTEEEEECCTTT-CCCC--CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHH
T ss_pred CceEEecccccc-cCCC--cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHH
Confidence 689999999865 3343 577888999998875 567999999999999999998876432 111111 11111
Q ss_pred hccccccccccccCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCe
Q 036563 224 SFSVIPAIGELVAGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGV 279 (288)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~ 279 (288)
. +. ...+ .. -.+.++|+++|++|||+.+++.....+.
T Consensus 201 m------l~-~~~~-g~-----------ert~~e~~~ll~~AGf~~vkv~~~~~~~ 237 (243)
T d1kyza2 201 M------LA-HNPG-GK-----------ERTQKEFEDLAKGAGFQGFKVHCNAFNT 237 (243)
T ss_dssp H------HH-HCSS-CC-----------CEEHHHHHHHHHHHCCSCEEEEEEETTE
T ss_pred H------Hh-hCCC-CC-----------cCCHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 0 00 0000 11 1268899999999999999988765554
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.54 E-value=7.1e-14 Score=117.64 Aligned_cols=155 Identities=19% Similarity=0.270 Sum_probs=110.0
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
..+|||||||+|.++..+++.+ |+.+++++|. +..++. .+.. ++++++.+|+.+
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~-----------------P~l~~~v~Dl-p~vi~~-------~~~~-~rv~~~~gD~f~ 134 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETF-----------------PKLKCIVFDR-PQVVEN-------LSGS-NNLTYVGGDMFT 134 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHC-----------------TTCEEEEEEC-HHHHTT-------CCCB-TTEEEEECCTTT
T ss_pred ceEEEEecCCccHHHHHHHHhC-----------------CCCeEEEecC-HHHHHh-------Cccc-CceEEEecCccc
Confidence 4589999999999999999998 6789999997 444332 2222 789999999875
Q ss_pred CCCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCC---cEEEEEeccCCChHH---HHHHHHHhhccccccccccc
Q 036563 164 LCFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRG---GRFLCLELSHVDIPV---FKELYDYYSFSVIPAIGELV 235 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pg---G~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 235 (288)
. .+ .+|++++.+++|++++. .++|+++++.|+|| |++++++...++... .... .... .+. + ...
T Consensus 135 ~-~p--~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~-~~~~-dl~--m-~~~ 206 (244)
T d1fp2a2 135 S-IP--NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQI-KLLM-DVN--M-ACL 206 (244)
T ss_dssp C-CC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHH-HHHH-HHH--G-GGG
T ss_pred C-CC--CCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHH-HHHH-HHH--H-HhC
Confidence 3 23 58999999999999865 57899999999998 788888876543221 1111 1110 000 0 011
Q ss_pred cCCCcchhhhHHHHhcCCChHHHHHHHHHcCCcEEEEEEeeCCeeEEEEee
Q 036563 236 AGDRGSYQYLVESVRRFPPQEKFAAMISDAGFQKVEYENLVGGVVAIHSGL 286 (288)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~~~ 286 (288)
.+ . -.|.++|+++|+++||+.+++.+..+ ...++-++
T Consensus 207 ~G--~-----------ert~~e~~~ll~~AGf~~~~i~~~~~-~~svIE~~ 243 (244)
T d1fp2a2 207 NG--K-----------ERNEEEWKKLFIEAGFQHYKISPLTG-FLSLIEIY 243 (244)
T ss_dssp TC--C-----------CEEHHHHHHHHHHTTCCEEEEEEEET-TEEEEEEE
T ss_pred CC--c-----------CCCHHHHHHHHHHcCCceEEEEECCC-CeEEEEEe
Confidence 11 1 12789999999999999999988765 44555443
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=3.2e-14 Score=124.29 Aligned_cols=112 Identities=18% Similarity=0.334 Sum_probs=92.4
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc----
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER---- 147 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~---- 147 (288)
...++..+...|+.+|||+|||+|.++..++...+ +.++|+++|+++.+++.|++++...
T Consensus 87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg----------------~~G~V~t~E~~~~~~~~A~~n~~~~~~~~ 150 (324)
T d2b25a1 87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVG----------------SQGRVISFEVRKDHHDLAKKNYKHWRDSW 150 (324)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHC----------------TTCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhC----------------CCcEEEEecCCHHHHHHHHHHHHHhhhhh
Confidence 35678889999999999999999999999999986 6789999999999999999987753
Q ss_pred ------CCCCCceEEEEcccccCC--CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 148 ------GYPDKSLLWVEGDAEALC--FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 148 ------~~~~~~v~~~~~d~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
++. .++.+..+|+.... +++..||.|++ .++++..+|.++.++|||||++++
T Consensus 151 ~~~~~~~~~-~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~ 210 (324)
T d2b25a1 151 KLSHVEEWP-DNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAV 210 (324)
T ss_dssp TTTCSSCCC-CCEEEEESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEE
T ss_pred hhhhhhccc-cceeEEecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEE
Confidence 222 68999999987653 45567999986 456777899999999999999986
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.4e-14 Score=118.18 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=92.5
Q ss_pred HHHHhhc--CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 73 DRLVSKL--NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 73 ~~~~~~l--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+.+.+ ...++.+|||||||+|..+..+++..+ +..+|+++|+++++++.+++++...+..
T Consensus 64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~----------------~~g~V~~ie~~~~l~~~a~~~l~~~~~~ 127 (224)
T d1i1na_ 64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVG----------------CTGKVIGIDHIKELVDDSVNNVRKDDPT 127 (224)
T ss_dssp HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHC----------------TTCEEEEEESCHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhC----------------CCceEEEEcCCHHHHHHHHHhccccCcc
Confidence 3566666 557889999999999999999998875 5689999999999999999988765432
Q ss_pred ---CCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 151 ---DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 151 ---~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..++.+..+|..........||.|++..+++++++ .+.+.|||||++++.
T Consensus 128 ~~~~~~~~~~~gD~~~~~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 128 LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILP 180 (224)
T ss_dssp HHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred cccccceEEEEeecccccchhhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEE
Confidence 14788999998877767778999999999887653 467899999999974
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=5.7e-14 Score=123.45 Aligned_cols=115 Identities=15% Similarity=0.230 Sum_probs=92.8
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.+.+.+.+.....++.+|||||||+|.++..+++.. ..+|+++|.++ +++.+++.....+.
T Consensus 25 ~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~G------------------a~~V~avd~s~-~~~~a~~~~~~~~~ 85 (328)
T d1g6q1_ 25 SYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG------------------AKHVIGVDMSS-IIEMAKELVELNGF 85 (328)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTC------------------CSEEEEEESST-HHHHHHHHHHHTTC
T ss_pred HHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhC------------------CCEEEEEeCCH-HHHHHHHHHHHhCc
Confidence 344555444444467899999999999998888763 26899999986 67888888888877
Q ss_pred CCCceEEEEcccccCCCCCCCeeEEEeccccccc---cCHHHHHHHHHhhccCCcEEE
Q 036563 150 PDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV---THIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~ 204 (288)
. .++.++.+|+.++++++++||+|++....++. .....++..+.++|||||.++
T Consensus 86 ~-~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 86 S-DKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp T-TTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred c-ccceEEEeehhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 6 78999999999998888899999986665433 457888999999999999986
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.50 E-value=3.5e-13 Score=110.22 Aligned_cols=104 Identities=21% Similarity=0.277 Sum_probs=89.5
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
-.|||||||+|.++..+++.. |+..++|+|+++.++..+.++....+++ |+.+..+|+..+
T Consensus 33 plvLdIGcG~G~~~~~lA~~~-----------------p~~~~iGid~~~~~v~~a~~~~~~~~l~--Ni~~~~~da~~l 93 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQN-----------------PDINYIGIDIQKSVLSYALDKVLEVGVP--NIKLLWVDGSDL 93 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHC-----------------TTSEEEEEESCHHHHHHHHHHHHHHCCS--SEEEEECCSSCG
T ss_pred CeEEEEeccCCHHHHHHHHHC-----------------CCCceEEEeccHHHHHHHHHhhhhhccc--cceeeecCHHHH
Confidence 379999999999999999998 6799999999999999999999888874 899999998876
Q ss_pred C--CCCCCeeEEEeccccccccCH--------HHHHHHHHhhccCCcEEEEEe
Q 036563 165 C--FEDSTMDGYTIAFGIRNVTHI--------EKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 165 ~--~~~~~~D~v~~~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~ 207 (288)
. +++.++|.|++.+.-.+.... ..+|+.+.++|+|||.|.+.+
T Consensus 94 ~~~~~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 94 TDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp GGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhccCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 3 677899999988765444321 578999999999999998754
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.3e-14 Score=125.94 Aligned_cols=123 Identities=12% Similarity=0.145 Sum_probs=97.1
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh-
Q 036563 68 HRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE- 146 (288)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~- 146 (288)
.....+.+++.+...++.+|||+|||+|..+..++... +..+++|+|+++.+++.|++....
T Consensus 136 ~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~-----------------~~~~~~Gid~s~~~~~~a~~~~~~~ 198 (328)
T d1nw3a_ 136 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-----------------NCKHHYGVEKADIPAKYAETMDREF 198 (328)
T ss_dssp CHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHC-----------------CCSEEEEEECSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHh-----------------CCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 34445678888888999999999999999999998876 346899999999999988776443
Q ss_pred ------cCCCCCceEEEEcccccCCCCCCC--eeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 147 ------RGYPDKSLLWVEGDAEALCFEDST--MDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 147 ------~~~~~~~v~~~~~d~~~~~~~~~~--~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
.+....++.++++|+.+.++.+.. +|+|+++. +.+.++....|.++.+.|||||++++.+.
T Consensus 199 ~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~~advi~~~~-~~f~~~~~~~l~e~~r~LKpGg~iv~~~~ 267 (328)
T d1nw3a_ 199 RKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNN-FAFGPEVDHQLKERFANMKEGGRIVSSKP 267 (328)
T ss_dssp HHHHHHHTCCCCCEEEEECCTTSHHHHHHHHHCSEEEECC-TTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred HHHhhhccccCCceEEEECcccccccccccCcceEEEEcc-eecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence 233335899999999887654433 46777654 45667888999999999999999997543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=1.7e-13 Score=119.78 Aligned_cols=115 Identities=12% Similarity=0.132 Sum_probs=91.0
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.+++.+.......++.+|||||||+|.++..+++.. ..+|+++|.++.+ ..+++.....++
T Consensus 20 ~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~G------------------a~~V~avd~s~~~-~~a~~~~~~n~~ 80 (316)
T d1oria_ 20 TYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAG------------------ARKVIGIECSSIS-DYAVKIVKANKL 80 (316)
T ss_dssp HHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTT------------------CSEEEEEECSTTH-HHHHHHHHHTTC
T ss_pred HHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHhC------------------CCEEEEEcCcHHH-hhhhhHHHHhCC
Confidence 344555443334467899999999999999888863 2689999999754 666677777777
Q ss_pred CCCceEEEEcccccCCCCCCCeeEEEeccccccc---cCHHHHHHHHHhhccCCcEEE
Q 036563 150 PDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV---THIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~ 204 (288)
. +++.++.+|+.+++.+.+++|+|++....+.. .....++..+.++|+|||.++
T Consensus 81 ~-~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 81 D-HVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp T-TTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred c-cccceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 6 78999999999998888899999987665444 357889999999999999987
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.48 E-value=1.6e-13 Score=113.71 Aligned_cols=105 Identities=21% Similarity=0.258 Sum_probs=87.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.+.+..+++.+|||||||+|..+..+++.. .+|+++|+++.+.+.++++.... .
T Consensus 60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~-------------------~~V~aiE~~~~~~~~A~~~~~~~----~ 116 (224)
T d1vbfa_ 60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-------------------DKVVSVEINEKMYNYASKLLSYY----N 116 (224)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-------------------SEEEEEESCHHHHHHHHHHHTTC----S
T ss_pred HHHHHHhhhcccceEEEecCCCCHHHHHHHHHh-------------------cccccccccHHHHHHHHHHHhcc----c
Confidence 356788889999999999999999998887764 78999999999999999887654 5
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.+..+|........++||.|++..++.++++ .+.+.|+|||++++.
T Consensus 117 nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ip~------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 117 NIKLILGDGTLGYEEEKPYDRVVVWATAPTLLC------KPYEQLKEGGIMILP 164 (224)
T ss_dssp SEEEEESCGGGCCGGGCCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred ccccccCchhhcchhhhhHHHHHhhcchhhhhH------HHHHhcCCCCEEEEE
Confidence 899999998765445678999999988877643 356789999999874
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3.3e-13 Score=117.59 Aligned_cols=116 Identities=14% Similarity=0.163 Sum_probs=92.4
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+.+.+.+.+.....++.+|||||||+|.++..+++.. ..+|+++|.++.+.. +++.....+
T Consensus 21 ~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~G------------------a~~V~aid~s~~~~~-a~~~~~~~~ 81 (311)
T d2fyta1 21 ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG------------------AKKVLGVDQSEILYQ-AMDIIRLNK 81 (311)
T ss_dssp HHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTT------------------CSEEEEEESSTHHHH-HHHHHHHTT
T ss_pred HHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcC------------------CCEEEEEeCHHHHHH-HHHHHHHhC
Confidence 4555667666666678899999999999999888874 268999999998764 555556666
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEecccccccc---CHHHHHHHHHhhccCCcEEE
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT---HIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~ 204 (288)
.. .++.++.+|+.+++.+.++||+|++....++.. ....++....++|+|||.++
T Consensus 82 ~~-~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 82 LE-DTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp CT-TTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CC-ccceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 65 789999999999988888999999976655443 35677888889999999987
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.42 E-value=5.1e-13 Score=108.11 Aligned_cols=132 Identities=18% Similarity=0.305 Sum_probs=107.6
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+++++.+.+.++..+||++||+|..+..+++.+ ++++++++|.++.|++.+++++...+
T Consensus 12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~-----------------~~~~vi~~D~d~~~l~~a~~~l~~~~--- 71 (192)
T d1m6ya2 12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHC-----------------PGCRIIGIDVDSEVLRIAEEKLKEFS--- 71 (192)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHC-----------------TTCEEEEEESCHHHHHHHHHHTGGGT---
T ss_pred HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcC-----------------CCCeEEEeechHHHHHHHHHhhcccc---
Confidence 3567888888999999999999999999999987 46899999999999999999987754
Q ss_pred CceEEEEcccccC-----CCCCCCeeEEEeccccc---------cccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHH
Q 036563 152 KSLLWVEGDAEAL-----CFEDSTMDGYTIAFGIR---------NVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFK 217 (288)
Q Consensus 152 ~~v~~~~~d~~~~-----~~~~~~~D~v~~~~~l~---------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~ 217 (288)
.++.++.+++.++ .+..+++|.|+....+. .+......|..+.++|+|||.++++.+...+...+.
T Consensus 72 ~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk 151 (192)
T d1m6ya2 72 DRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVK 151 (192)
T ss_dssp TTEEEEECCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHH
T ss_pred ccccchhHHHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHH
Confidence 5899999988765 24457899999876652 223456789999999999999999888776655566
Q ss_pred HHHHHh
Q 036563 218 ELYDYY 223 (288)
Q Consensus 218 ~~~~~~ 223 (288)
.++..+
T Consensus 152 ~~f~~~ 157 (192)
T d1m6ya2 152 ETFRNS 157 (192)
T ss_dssp HHHHHC
T ss_pred HHHhhc
Confidence 655543
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.41 E-value=8.7e-13 Score=108.53 Aligned_cols=108 Identities=23% Similarity=0.314 Sum_probs=92.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
..+.+.+..+++.+|||||||+|..+..++...+ .+++++|.++.+.+.+++++...++ .
T Consensus 68 a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g------------------~~V~~ie~~~~l~~~a~~~l~~~g~--~ 127 (215)
T d1jg1a_ 68 AIMLEIANLKPGMNILEVGTGSGWNAALISEIVK------------------TDVYTIERIPELVEFAKRNLERAGV--K 127 (215)
T ss_dssp HHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC------------------SCEEEEESCHHHHHHHHHHHHHTTC--C
T ss_pred HHHHHhhccCccceEEEecCCCChhHHHHHHhhC------------------ceeEEEeccHHHHHHHHHHHHHcCC--c
Confidence 4577888899999999999999999998888763 6799999999999999999998887 4
Q ss_pred ceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 153 SLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 153 ~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
|+.+..+|.........+||.|++..++.++++. +...|+|||++++.
T Consensus 128 nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~ip~~------l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 128 NVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEP------LIEQLKIGGKLIIP 175 (215)
T ss_dssp SEEEEESCGGGCCGGGCCEEEEEECSBBSSCCHH------HHHTEEEEEEEEEE
T ss_pred eeEEEECccccCCcccCcceeEEeecccccCCHH------HHHhcCCCCEEEEE
Confidence 9999999988765567789999999988876532 56679999999864
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.35 E-value=1.9e-12 Score=115.87 Aligned_cols=153 Identities=11% Similarity=0.120 Sum_probs=103.0
Q ss_pred hhHHhHHHHHHHhHhhH-H------HhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhh
Q 036563 38 AEEKSQLVSNVFSSVAK-N------YDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKR 110 (288)
Q Consensus 38 ~~~~~~~~~~~~~~~~~-~------y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~ 110 (288)
..-....+.++|++... . |........++....+...+++.+..+++.++||||||+|..+..++...+
T Consensus 164 ~~~~~~i~~~~y~r~v~p~~~~L~~Y~~fs~~vYGEl~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g---- 239 (406)
T d1u2za_ 164 RSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG---- 239 (406)
T ss_dssp HHHHHHHHHHHHHHHTGGGGGGGCSCCSSGGGCCCCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhhcccccCChHHhcccCCCCCCccccCCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC----
Confidence 33334555666655543 2 222222222334445567788999999999999999999999999999873
Q ss_pred hhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc-------CCCCCceEE-EEcccccCCC---CCCCeeEEEeccc
Q 036563 111 RALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER-------GYPDKSLLW-VEGDAEALCF---EDSTMDGYTIAFG 179 (288)
Q Consensus 111 ~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~~~~~v~~-~~~d~~~~~~---~~~~~D~v~~~~~ 179 (288)
..+++|+|+++.|++.|+++.... +.......+ ..+++...+. .-..+|+|+++.
T Consensus 240 -------------~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn- 305 (406)
T d1u2za_ 240 -------------CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN- 305 (406)
T ss_dssp -------------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC-
T ss_pred -------------CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccccccceEEEEec-
Confidence 468999999999999998876542 111122333 3344433211 112478888765
Q ss_pred cccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 180 IRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 180 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+.+.++....|.++.+.|||||++++.+.
T Consensus 306 ~~f~~~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 306 FLFDEDLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp TTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred ccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence 45667888999999999999999987543
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.32 E-value=3e-11 Score=102.16 Aligned_cols=110 Identities=11% Similarity=0.121 Sum_probs=89.4
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
+..+...+ .++.+|||+|||+|.++..++... .++|+++|+++.+++.+++++..+++.
T Consensus 98 r~ri~~~~--~~g~~VlD~~aG~G~~~l~~a~~~------------------~~~V~avd~n~~a~~~~~~N~~~n~l~- 156 (260)
T d2frna1 98 RVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYG------------------KAKVIAIEKDPYTFKFLVENIHLNKVE- 156 (260)
T ss_dssp HHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHT------------------CCEEEEECCCHHHHHHHHHHHHHTTCT-
T ss_pred HHHHHhhc--CCccEEEECcceEcHHHHHHHHhC------------------CcEEEEecCCHHHHHHHHHHHHHhCCC-
Confidence 34455554 358899999999999999998763 379999999999999999999999887
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+++.++++|+.++.. .+.||.|+++.. .....+|..+.++|++||.+.+.+
T Consensus 157 ~~v~~~~~D~~~~~~-~~~~D~Ii~~~p----~~~~~~l~~a~~~l~~gG~lh~~~ 207 (260)
T d2frna1 157 DRMSAYNMDNRDFPG-ENIADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHN 207 (260)
T ss_dssp TTEEEECSCTTTCCC-CSCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEEcchHHhcc-CCCCCEEEECCC----CchHHHHHHHHhhcCCCCEEEEEe
Confidence 789999999987753 467999987644 234557888899999999987643
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.1e-10 Score=98.14 Aligned_cols=83 Identities=11% Similarity=0.015 Sum_probs=68.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
+..++||+|||+|.++..++... ++.+++++|+++.+++.|++++...++. .++.+...+..
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~-----------------~~~~~~~~Di~~~al~~A~~N~~~n~l~-~~~~~~~~~~~ 122 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATL-----------------NGWYFLATEVDDMCFNYAKKNVEQNNLS-DLIKVVKVPQK 122 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-----------------HCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTT
T ss_pred ccceEEEeCCCchHHHHHHHHhC-----------------CCccccceecCHHHHHHHHHHHHHhCCC-cceeeeeeccH
Confidence 44689999999999999999987 4799999999999999999999998887 77888776544
Q ss_pred cCC------CCCCCeeEEEeccccccc
Q 036563 163 ALC------FEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 163 ~~~------~~~~~~D~v~~~~~l~~~ 183 (288)
... ..+++||+|+|+..+...
T Consensus 123 ~~~~~~~~~~~~~~fD~ivsNPPY~~~ 149 (250)
T d2h00a1 123 TLLMDALKEESEIIYDFCMCNPPFFAN 149 (250)
T ss_dssp CSSTTTSTTCCSCCBSEEEECCCCC--
T ss_pred HhhhhhhhhcccCceeEEEecCccccc
Confidence 321 234679999999987654
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.31 E-value=4.2e-12 Score=105.08 Aligned_cols=117 Identities=20% Similarity=0.266 Sum_probs=89.1
Q ss_pred HHHHhhc--CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 73 DRLVSKL--NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 73 ~~~~~~l--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+.+.+ ..+++.+|||||||+|..+..+++..+..+ ..+..+|+++|.++++++.+++++...+..
T Consensus 68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g-----------~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~ 136 (223)
T d1r18a_ 68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKG-----------VDADTRIVGIEHQAELVRRSKANLNTDDRS 136 (223)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSC-----------CCTTCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhcc-----------CCcccEEEEEecCHHHHHHHHHhhhhcchh
Confidence 3456666 567889999999999999999988864111 012358999999999999998875432110
Q ss_pred ---CCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 151 ---DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 151 ---~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
-.++.+..+|......+..+||.|++..++.++++ .+.+.|+|||++++.
T Consensus 137 ~~~~~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 137 MLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVP 189 (223)
T ss_dssp HHHHTSEEEEESCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEE
T ss_pred hcCccEEEEEecccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEE
Confidence 14799999998876666678999999999887653 367899999999874
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.29 E-value=1.4e-11 Score=107.61 Aligned_cols=120 Identities=18% Similarity=0.111 Sum_probs=92.7
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
.+..+...+ .++.+|||+|||+|.++..++... ..+|+++|+++.+++.+++++..+++.
T Consensus 135 ~r~~~~~~~--~~g~~VLDl~~g~G~~si~~a~~g------------------a~~V~~vD~s~~al~~a~~N~~~ngl~ 194 (324)
T d2as0a2 135 NRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIAG------------------ADEVIGIDKSPRAIETAKENAKLNGVE 194 (324)
T ss_dssp HHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHTT------------------CSEEEEEESCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHhhc--CCCCeeecccCcccchhhhhhhcC------------------CcEEEeecCCHHHHHHHHHHHHHcCCC
Confidence 333444433 457899999999999999888763 268999999999999999999999886
Q ss_pred CCceEEEEcccccC----CCCCCCeeEEEecccccccc---------CHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 151 DKSLLWVEGDAEAL----CFEDSTMDGYTIAFGIRNVT---------HIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 151 ~~~v~~~~~d~~~~----~~~~~~~D~v~~~~~l~~~~---------~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
.+++++.+|+.+. .....+||+|++........ +..+++..+.++|+|||.|++...++.
T Consensus 195 -~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~ 267 (324)
T d2as0a2 195 -DRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 267 (324)
T ss_dssp -GGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred -ccceeeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 6899999998653 23456899999876532211 235578889999999999998776654
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.27 E-value=9.5e-12 Score=108.41 Aligned_cols=107 Identities=21% Similarity=0.179 Sum_probs=86.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|||++||+|.++..++.. ..+|+++|+|+.+++.+++++..+++. ++.++.+|+.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g-------------------~~~V~~vD~s~~al~~a~~n~~~ngl~--~~~~i~~d~~ 203 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG-------------------FREVVAVDSSAEALRRAEENARLNGLG--NVRVLEANAF 203 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-------------------EEEEEEEESCHHHHHHHHHHHHHTTCT--TEEEEESCHH
T ss_pred CCCeeeccCCCCcHHHHHHHhc-------------------CCcEEeecchHHHHHHHHHHHHHcCCC--CcceeeccHH
Confidence 5789999999999999887753 379999999999999999999998884 7999999986
Q ss_pred cC----CCCCCCeeEEEeccccccc---------cCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 163 AL----CFEDSTMDGYTIAFGIRNV---------THIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 163 ~~----~~~~~~~D~v~~~~~l~~~---------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+. ....++||+|++....... .+...++..+.++|+|||.+++...+.
T Consensus 204 ~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 204 DLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 53 3345689999997653221 122457889999999999999876654
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.20 E-value=2.8e-11 Score=94.11 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=85.5
Q ss_pred HHHhhcCC-CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 74 RLVSKLNP-FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 74 ~~~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
.+...+.. -.+.+|||+|||+|.++..++.+. ..+++++|.++.+++.+++++...+.. +
T Consensus 4 ~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rg------------------a~~v~~ve~~~~a~~~~~~n~~~~~~~-~ 64 (152)
T d2esra1 4 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG------------------MSAAVLVEKNRKAQAIIQDNIIMTKAE-N 64 (152)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT------------------CCEEEEECCCHHHHHHHHHHHHTTTCG-G
T ss_pred HHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhC------------------cceeeeehhchhhhhhhhhhhhhcccc-c
Confidence 34444443 357899999999999999887764 269999999999999999999888776 7
Q ss_pred ceEEEEcccccC-CCCCCCeeEEEeccccccccCHHHHHHHHH--hhccCCcEEEE
Q 036563 153 SLLWVEGDAEAL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAY--RVLKRGGRFLC 205 (288)
Q Consensus 153 ~v~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i 205 (288)
+++++++|+... ....++||+|++..... .......+..+. ++|+|+|.+++
T Consensus 65 ~~~ii~~D~~~~l~~~~~~fDiIf~DPPy~-~~~~~~~l~~i~~~~~L~~~g~iii 119 (152)
T d2esra1 65 RFTLLKMEAERAIDCLTGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVC 119 (152)
T ss_dssp GEEEECSCHHHHHHHBCSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred chhhhcccccccccccccccceeEechhhc-cchHHHHHHHHHHCCCcCCCeEEEE
Confidence 799999998764 44567899999876532 122344555553 57999999885
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.20 E-value=9.1e-11 Score=101.92 Aligned_cols=120 Identities=12% Similarity=0.006 Sum_probs=91.4
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
.+..++..+. ++.+|||++||+|.++..++... ..+|+++|+++.+++.+++++..+++.
T Consensus 134 ~r~~l~~~~~--~g~~VLdlf~~~G~~sl~aa~~g------------------a~~V~~vD~s~~a~~~a~~N~~~n~l~ 193 (317)
T d2b78a2 134 VRNELINGSA--AGKTVLNLFSYTAAFSVAAAMGG------------------AMATTSVDLAKRSRALSLAHFEANHLD 193 (317)
T ss_dssp HHHHHHHTTT--BTCEEEEETCTTTHHHHHHHHTT------------------BSEEEEEESCTTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhh--CCCceeecCCCCcHHHHHHHhCC------------------CceEEEecCCHHHHHHHHHHHHHhccc
Confidence 3344544443 47899999999999998877653 258999999999999999999988886
Q ss_pred CCceEEEEcccccC----CCCCCCeeEEEeccccc-----cc----cCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 151 DKSLLWVEGDAEAL----CFEDSTMDGYTIAFGIR-----NV----THIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 151 ~~~v~~~~~d~~~~----~~~~~~~D~v~~~~~l~-----~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
..+++++.+|+.+. .....+||+|++...-- .. .+...+++.+.++|+|||.+++...+.
T Consensus 194 ~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 194 MANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp CTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CcceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 56899999998653 22346899999865411 11 134568889999999999999866554
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.14 E-value=3.6e-10 Score=95.69 Aligned_cols=92 Identities=9% Similarity=0.152 Sum_probs=71.1
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+.+.+.+.......+..+++|+|||+|..+..++.. +..+++++|+|+.+++.|++++...+
T Consensus 96 E~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~------------------~~~~v~a~Dis~~Al~~A~~Na~~~~ 157 (271)
T d1nv8a_ 96 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF------------------SDAIVFATDVSSKAVEIARKNAERHG 157 (271)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH------------------SSCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc------------------ccceeeechhhhhHHHHHHHHHHHcC
Confidence 344444444444344568999999999999988754 57899999999999999999999888
Q ss_pred CCCCceEEEEcccccC-CCCCCCeeEEEeccc
Q 036563 149 YPDKSLLWVEGDAEAL-CFEDSTMDGYTIAFG 179 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~-~~~~~~~D~v~~~~~ 179 (288)
+. .++.+..+|..+. +...++||+|++|..
T Consensus 158 ~~-~~~~i~~~~~~~~~~~~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 158 VS-DRFFVRKGEFLEPFKEKFASIEMILSNPP 188 (271)
T ss_dssp CT-TSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CC-ceeEEeecccccccccccCcccEEEEccc
Confidence 76 6788888887654 233468999999865
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=1.9e-10 Score=94.37 Aligned_cols=121 Identities=15% Similarity=0.199 Sum_probs=90.0
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.+...++.... +.+|||+|||+|..+..+++.++ ++++++++|+++.+.+.+++.+...++
T Consensus 46 ~lL~~lv~~~k---pk~ILEiGt~~G~Sti~la~al~----------------~~g~v~sid~~~~~~~~a~~~~~~~gl 106 (214)
T d2cl5a1 46 QIMDAVIREYS---PSLVLELGAYCGYSAVRMARLLQ----------------PGARLLTMEMNPDYAAITQQMLNFAGL 106 (214)
T ss_dssp HHHHHHHHHHC---CSEEEEECCTTSHHHHHHHTTCC----------------TTCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhC---CCEEEEEccCchhHHHHHHHhCC----------------CccEEEEEeccHHHHHHHHHHHHHcCC
Confidence 34444555443 46999999999999999998864 468999999999999999999998888
Q ss_pred CCCceEEEEcccccC-C-----CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 150 PDKSLLWVEGDAEAL-C-----FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~-~-----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
. ++++++.+|..+. + ...+.||+|++...-... .....+.+..++|+|||.+++-+...+
T Consensus 107 ~-~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~-~~~~~l~~~~~lLkpGGvIv~Ddvl~~ 172 (214)
T d2cl5a1 107 Q-DKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRY-LPDTLLLEKCGLLRKGTVLLADNVIVP 172 (214)
T ss_dssp G-GGEEEEESCHHHHGGGHHHHSCCCCEEEEEECSCGGGH-HHHHHHHHHTTCEEEEEEEEESCCCCC
T ss_pred C-ccceeeeccccccccchhhcccccccceeeeccccccc-ccHHHHHHHhCccCCCcEEEEeCcCCC
Confidence 7 7899999998653 1 344679999986431111 123357778899999998775333333
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=3.5e-10 Score=93.01 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=91.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.+...++.... ..+|||||||+|..+..+++..+ ++++++.+|.+++..+.+++.+...++
T Consensus 49 ~lL~~L~~~~~---~k~vLEiGt~~GyStl~~a~al~----------------~~g~i~tie~~~~~~~~A~~~~~~ag~ 109 (219)
T d2avda1 49 QLLANLARLIQ---AKKALDLGTFTGYSALALALALP----------------ADGRVVTCEVDAQPPELGRPLWRQAEA 109 (219)
T ss_dssp HHHHHHHHHTT---CCEEEEECCTTSHHHHHHHTTSC----------------TTCEEEEEESCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccC---CCeEEEEechhhHHHHHHHHhCC----------------CCceEEEEeechhHHHHHHHHHHhcCc
Confidence 33344444443 57999999999999999999874 468999999999999999999999888
Q ss_pred CCCceEEEEcccccC------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 150 PDKSLLWVEGDAEAL------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
. +++++..+|+.+. ....++||+|+....- .+....++.+.++|+|||.+++-
T Consensus 110 ~-~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 110 E-HKIDLRLKPALETLDELLAAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp T-TTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred c-ceEEEEEeehhhcchhhhhhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEe
Confidence 7 7899999997553 1235689999986532 34567788899999999999863
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.09 E-value=9e-11 Score=93.01 Aligned_cols=102 Identities=12% Similarity=0.116 Sum_probs=72.9
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+|||+|.++..++... ++++++|.++.+++.+++++...++. .++....+|.
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~g-------------------a~vv~vD~~~~a~~~~~~N~~~~~~~-~~v~~~~~d~ 99 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEG-------------------WEAVLVEKDPEAVRLLKENVRRTGLG-ARVVALPVEV 99 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTT-------------------CEEEEECCCHHHHHHHHHHHHHHTCC-CEEECSCHHH
T ss_pred cCCCeEEEeccccchhhhhhhhcc-------------------chhhhcccCHHHHhhhhHHHHhhccc-cceeeeehhc
Confidence 347799999999999998877763 78999999999999999999888765 3443333332
Q ss_pred c--cCCCCCCCeeEEEeccccccccCHHHHHHHH--HhhccCCcEEEE
Q 036563 162 E--ALCFEDSTMDGYTIAFGIRNVTHIEKALAEA--YRVLKRGGRFLC 205 (288)
Q Consensus 162 ~--~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~--~~~L~pgG~l~i 205 (288)
. ......++||+|+++..++. +....+..+ ..+|+|||.+++
T Consensus 100 ~~~~~~~~~~~fD~If~DPPY~~--~~~~~l~~l~~~~ll~~~g~ivi 145 (171)
T d1ws6a1 100 FLPEAKAQGERFTVAFMAPPYAM--DLAALFGELLASGLVEAGGLYVL 145 (171)
T ss_dssp HHHHHHHTTCCEEEEEECCCTTS--CTTHHHHHHHHHTCEEEEEEEEE
T ss_pred ccccccccCCccceeEEcccccc--CHHHHHHHHHHcCCcCCCeEEEE
Confidence 1 11234568999999876542 222333333 357999998875
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.07 E-value=3.9e-10 Score=96.99 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=83.9
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||++||+|.++..++.. +++|+++|.|+.+++.+++++..+++...+++++..|+
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~-------------------GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~ 191 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA-------------------GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDA 191 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT-------------------TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCH
T ss_pred cCCCeEEEecCCCcHHHHHHHhC-------------------CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCH
Confidence 34679999999999999988765 37999999999999999999988887745799999998
Q ss_pred ccC----CCCCCCeeEEEeccccc---------cc-cCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 162 EAL----CFEDSTMDGYTIAFGIR---------NV-THIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 162 ~~~----~~~~~~~D~v~~~~~l~---------~~-~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
.+. .....+||+|++...-- .+ .+...++..+.++|+|||.+++...+
T Consensus 192 ~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 192 MKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp HHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred HHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 664 12346899999864411 01 12345677888999999976655443
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.00 E-value=1.4e-09 Score=86.88 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=89.5
Q ss_pred HHHHHHHhhcCC-CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 70 LWKDRLVSKLNP-FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 70 ~~~~~~~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..++.+...+.. ..+.+|||++||+|.++..++.+. ..+++++|.++.+++.+++++...+
T Consensus 27 ~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srG------------------a~~v~~ve~~~~a~~~~~~N~~~~~ 88 (182)
T d2fhpa1 27 KVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG------------------MDKSICIEKNFAALKVIKENIAITK 88 (182)
T ss_dssp HHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT------------------CSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCEEEEcccccccccceeeecc------------------hhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444555555543 457899999999999999988874 2689999999999999999988776
Q ss_pred CCCCceEEEEcccccC----CCCCCCeeEEEeccccccccCHHHHHHHHH--hhccCCcEEEE
Q 036563 149 YPDKSLLWVEGDAEAL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAY--RVLKRGGRFLC 205 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i 205 (288)
.. .++.++..|+... .....+||+|++..... ..+....+..+. .+|+++|.+++
T Consensus 89 ~~-~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY~-~~~~~~~l~~i~~~~~L~~~giIi~ 149 (182)
T d2fhpa1 89 EP-EKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVC 149 (182)
T ss_dssp CG-GGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cc-cccccccccchhhhhhhcccCCCcceEEechhhh-hhHHHHHHHHHHHCCCCCCCEEEEE
Confidence 65 6899999998653 12345799999988753 345666777765 46999998874
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.98 E-value=4.1e-09 Score=85.37 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=66.6
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
.....-.+.+|||+|||+|.++..++... ..+++++|+++.+++.+++++...+ .+..+
T Consensus 40 ~~~~dl~g~~vLDlg~GtG~l~i~a~~~g------------------~~~v~~vdi~~~~~~~a~~N~~~~~---~~~~~ 98 (201)
T d1wy7a1 40 YSLGDIEGKVVADLGAGTGVLSYGALLLG------------------AKEVICVEVDKEAVDVLIENLGEFK---GKFKV 98 (201)
T ss_dssp HHTTSSTTCEEEEETCTTCHHHHHHHHTT------------------CSEEEEEESCHHHHHHHHHHTGGGT---TSEEE
T ss_pred HhcCCCCCCEEEECcCcchHHHHHHHHcC------------------CCEEEEEcCcHHHHHHHHHHHHHcC---CCceE
Confidence 34444567899999999999998877653 3689999999999999999988766 35788
Q ss_pred EEcccccCCCCCCCeeEEEecccccc
Q 036563 157 VEGDAEALCFEDSTMDGYTIAFGIRN 182 (288)
Q Consensus 157 ~~~d~~~~~~~~~~~D~v~~~~~l~~ 182 (288)
+.+|+..+ .++||+|+++..+..
T Consensus 99 ~~~d~~~~---~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 99 FIGDVSEF---NSRVDIVIMNPPFGS 121 (201)
T ss_dssp EESCGGGC---CCCCSEEEECCCCSS
T ss_pred EECchhhh---CCcCcEEEEcCcccc
Confidence 99998765 457999999887654
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.98 E-value=2.5e-09 Score=86.09 Aligned_cols=115 Identities=13% Similarity=0.120 Sum_probs=73.8
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--------------
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER-------------- 147 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------------- 147 (288)
.+..+|+++|||||.-...++..+.... .......+++++|+++.+++.|++..-..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~---------~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~y 93 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADAL---------GMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRY 93 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHH---------CSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHH
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhh---------hhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhc
Confidence 4457999999999984433332221000 00012368999999999999997542110
Q ss_pred ----CCC-----------CCceEEEEcccccC-CCCCCCeeEEEeccccccccCH--HHHHHHHHhhccCCcEEEE
Q 036563 148 ----GYP-----------DKSLLWVEGDAEAL-CFEDSTMDGYTIAFGIRNVTHI--EKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 148 ----~~~-----------~~~v~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i 205 (288)
... ...+.+...+.... +.+.+.||+|+|.+++.+++.. .++++++++.|+|||+|++
T Consensus 94 f~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 94 FMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp EEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eeecCCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 000 01123333333222 2334679999999999999754 6799999999999999885
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=2e-09 Score=86.01 Aligned_cols=102 Identities=11% Similarity=0.065 Sum_probs=81.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.+|||++||+|.++..++.+. ..+++.+|.++.+++.+++++...+. .+..++..|+.
T Consensus 43 ~~~~vLDlfaGsG~~giealsrG------------------a~~v~~VE~~~~a~~~~k~N~~~~~~--~~~~ii~~d~~ 102 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRY------------------AAGATLIEMDRAVSQQLIKNLATLKA--GNARVVNSNAM 102 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT------------------CSEEEEECSCHHHHHHHHHHHHHTTC--CSEEEECSCHH
T ss_pred chhhhhhhhccccceeeeEEecC------------------cceeEEEEEeechhhHHHHHHhhccc--cceeeeeeccc
Confidence 36799999999999999888874 26899999999999999999887665 47888999976
Q ss_pred cC-CCCCCCeeEEEeccccccccCHHHHHHHHHh--hccCCcEEEE
Q 036563 163 AL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYR--VLKRGGRFLC 205 (288)
Q Consensus 163 ~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~--~L~pgG~l~i 205 (288)
.. .....+||+|++...... ......+..+.+ +|+++|.+++
T Consensus 103 ~~l~~~~~~fDlIf~DPPY~~-~~~~~~l~~l~~~~~L~~~~iIii 147 (183)
T d2fpoa1 103 SFLAQKGTPHNIVFVDPPFRR-GLLEETINLLEDNGWLADEALIYV 147 (183)
T ss_dssp HHHSSCCCCEEEEEECCSSST-TTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ccccccccccCEEEEcCcccc-chHHHHHHHHHHCCCCCCCeEEEE
Confidence 54 345668999999887543 345566666654 6999998885
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.95 E-value=1.8e-09 Score=86.98 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=61.0
Q ss_pred cCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 79 LNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 79 l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
...-.+.+|||+|||+|.++..++... ..+|+++|+++.+++.++++. .++.+..
T Consensus 44 ~~dl~Gk~VLDlGcGtG~l~i~a~~~g------------------a~~V~~vDid~~a~~~ar~N~-------~~~~~~~ 98 (197)
T d1ne2a_ 44 DGNIGGRSVIDAGTGNGILACGSYLLG------------------AESVTAFDIDPDAIETAKRNC-------GGVNFMV 98 (197)
T ss_dssp HTSSBTSEEEEETCTTCHHHHHHHHTT------------------BSEEEEEESCHHHHHHHHHHC-------TTSEEEE
T ss_pred cCCCCCCEEEEeCCCCcHHHHHHHHcC------------------CCcccccccCHHHHHHHHHcc-------ccccEEE
Confidence 344468899999999999988776653 368999999999999998875 4688999
Q ss_pred cccccCCCCCCCeeEEEeccccc
Q 036563 159 GDAEALCFEDSTMDGYTIAFGIR 181 (288)
Q Consensus 159 ~d~~~~~~~~~~~D~v~~~~~l~ 181 (288)
+|+..++ ++||+|+++..+.
T Consensus 99 ~D~~~l~---~~fD~Vi~NPPfg 118 (197)
T d1ne2a_ 99 ADVSEIS---GKYDTWIMNPPFG 118 (197)
T ss_dssp CCGGGCC---CCEEEEEECCCC-
T ss_pred EehhhcC---CcceEEEeCcccc
Confidence 9988763 5799999987753
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.94 E-value=1.7e-09 Score=89.25 Aligned_cols=114 Identities=16% Similarity=0.145 Sum_probs=92.2
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..+...++.... ..+|||+|+++|..+..+++..+ ++++++.+|.+++..+.|++.+...+
T Consensus 48 g~~L~~L~~~~~---~k~iLEiGT~~GyStl~la~al~----------------~~g~v~tie~~~~~~~~A~~~~~~~g 108 (227)
T d1susa1 48 GQFLSMLLKLIN---AKNTMEIGVYTGYSLLATALAIP----------------EDGKILAMDINKENYELGLPVIKKAG 108 (227)
T ss_dssp HHHHHHHHHHHT---CCEEEEECCGGGHHHHHHHHHSC----------------TTCEEEEEESCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC---CCcEEEecchhhhhHHHHHhhCC----------------CCcEEEEEeccchhHHHHHHHHHHhc
Confidence 344445555544 46999999999999999999875 56899999999999999999999988
Q ss_pred CCCCceEEEEcccccC-C------CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 149 YPDKSLLWVEGDAEAL-C------FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~-~------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+. ++++++.+++.+. + ...++||+|++...- ......++.+.++|+|||.+++
T Consensus 109 ~~-~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa~k---~~y~~~~e~~~~ll~~gGiii~ 168 (227)
T d1susa1 109 VD-HKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADK---DNYLNYHKRLIDLVKVGGVIGY 168 (227)
T ss_dssp CG-GGEEEEESCHHHHHHHHHHCGGGTTCBSEEEECSCS---TTHHHHHHHHHHHBCTTCCEEE
T ss_pred cc-cceeeeehHHHHHHHHHHhccccCCceeEEEeccch---hhhHHHHHHHHhhcCCCcEEEE
Confidence 87 7899999998653 1 124679999986532 3467788899999999999986
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=2.6e-08 Score=80.71 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=85.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
++.+|+|+|+|.|..+..++-.. |+.+++.+|.+..-....+......++. |+.++...++
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~-----------------p~~~~~Lves~~KK~~FL~~~~~~L~L~--nv~v~~~R~E 125 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVR-----------------PEAHFTLLDSLGKRVRFLRQVQHELKLE--NIEPVQSRVE 125 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC-----------------TTSEEEEEESCHHHHHHHHHHHHHTTCS--SEEEEECCTT
T ss_pred cCCceeeeeccCCceeeehhhhc-----------------ccceEEEEecchHHHHHHHHHHHHcCCc--ceeeeccchh
Confidence 45699999999999999998876 6799999999999998888888888774 8999999988
Q ss_pred cCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 163 ALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 163 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+.. ...+||+|++.. +.....++.-+.+.++++|.+++.
T Consensus 126 ~~~-~~~~fD~V~sRA----~~~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 126 EFP-SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp TSC-CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred hhc-cccccceehhhh----hcCHHHHHHHHHHhcCCCcEEEEE
Confidence 764 345799998744 456888999999999999999863
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.83 E-value=4.1e-08 Score=84.69 Aligned_cols=122 Identities=18% Similarity=0.199 Sum_probs=95.8
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.......+.++++.+|||++||+|.=+..+++... ..+.+++.|.++..++..++++...+..
T Consensus 105 S~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~----------------~~~~i~a~d~~~~r~~~l~~~~~r~~~~- 167 (313)
T d1ixka_ 105 SMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMR----------------NDGVIYAFDVDENRLRETRLNLSRLGVL- 167 (313)
T ss_dssp HHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTT----------------TCSEEEEECSCHHHHHHHHHHHHHHTCC-
T ss_pred ccchhhcccCCccceeeecccchhhhhHhhhhhcc----------------cccceeeeccCHHHHHHHHHHHHHHHhh-
Confidence 34455677888999999999999999999988864 4678999999999999999999888874
Q ss_pred CceEEEEcccccCCCCCCCeeEEEeccccccc------cC---------H-------HHHHHHHHhhccCCcEEEEEecc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRNV------TH---------I-------EKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~------~~---------~-------~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
++.....|...++.....||.|++....... ++ . .++|.+..+.|||||.++...++
T Consensus 168 -~i~~~~~d~~~~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS 246 (313)
T d1ixka_ 168 -NVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 246 (313)
T ss_dssp -SEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred -ccccccccccccccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence 7888888877776666789999984432111 11 1 34689999999999999987776
Q ss_pred CC
Q 036563 210 HV 211 (288)
Q Consensus 210 ~~ 211 (288)
..
T Consensus 247 l~ 248 (313)
T d1ixka_ 247 LE 248 (313)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.82 E-value=4.3e-08 Score=85.08 Aligned_cols=116 Identities=13% Similarity=0.113 Sum_probs=84.4
Q ss_pred HhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 76 VSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
...+...++.+|||.|||+|.++..+.+...... .....++|+|+++.++..|+......+ .+..
T Consensus 110 ~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~------------~~~~~~~g~di~~~~~~~a~~~~~~~~---~~~~ 174 (328)
T d2f8la1 110 EKVIQKKKNVSILDPACGTANLLTTVINQLELKG------------DVDVHASGVDVDDLLISLALVGADLQR---QKMT 174 (328)
T ss_dssp HHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTS------------SCEEEEEEEESCHHHHHHHHHHHHHHT---CCCE
T ss_pred HHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhcc------------CccceEEEecccHHHHHHHHHHHHHhh---hhhh
Confidence 3444566778999999999999999887753111 134589999999999999988876655 3466
Q ss_pred EEEcccccCCCCCCCeeEEEeccccccccC------------------HHHHHHHHHhhccCCcEEEEEe
Q 036563 156 WVEGDAEALCFEDSTMDGYTIAFGIRNVTH------------------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 156 ~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~------------------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
...+|.... ....+||+|+++..+..... ...++..+.+.|+|||++.++-
T Consensus 175 ~~~~d~~~~-~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~ 243 (328)
T d2f8la1 175 LLHQDGLAN-LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 243 (328)
T ss_dssp EEESCTTSC-CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhccccccc-cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEe
Confidence 777775433 34568999999987643221 1236999999999999987653
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.82 E-value=1.2e-08 Score=84.41 Aligned_cols=89 Identities=7% Similarity=0.158 Sum_probs=72.9
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+...+.+++.+...++.+|||||||+|.++..+++.. .+++++|+++.+.+..+++....
T Consensus 7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~-------------------~~v~avE~D~~l~~~l~~~~~~~- 66 (235)
T d1qama_ 7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-------------------NFVTAIEIDHKLCKTTENKLVDH- 66 (235)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-------------------SEEEEECSCHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc-------------------CceEEEeeccchHHHHHHHhhcc-
Confidence 3455678888888889999999999999999999874 78999999999999998887654
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEecccc
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGI 180 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l 180 (288)
+++.++.+|+.+.+++......|+++...
T Consensus 67 ---~n~~i~~~D~l~~~~~~~~~~~vv~NLPY 95 (235)
T d1qama_ 67 ---DNFQVLNKDILQFKFPKNQSYKIFGNIPY 95 (235)
T ss_dssp ---CSEEEECCCGGGCCCCSSCCCEEEEECCG
T ss_pred ---cchhhhhhhhhhccccccccceeeeeehh
Confidence 68999999999887665444456655543
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.76 E-value=6e-07 Score=73.89 Aligned_cols=141 Identities=12% Similarity=0.081 Sum_probs=99.0
Q ss_pred HHHHHHHhHhhHHHhhhhhhhhhhhhHHHHHHHHhhc------CCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcc
Q 036563 43 QLVSNVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKL------NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDV 116 (288)
Q Consensus 43 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~ 116 (288)
+++..|++-+...=...+-.......+.|.+++...+ +.....+|+|||+|.|..+..++-..
T Consensus 24 ~~l~~y~~lL~~wN~~~NLts~~~~~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~----------- 92 (239)
T d1xdza_ 24 EQFELYYDMLVEWNEKINLTSITEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICF----------- 92 (239)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSCCSHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHhcCceEEEecCCHHHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhC-----------
Confidence 4455555544432222221112233445554444322 22345789999999999999988776
Q ss_pred cccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCC---CCCCeeEEEeccccccccCHHHHHHHH
Q 036563 117 LEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCF---EDSTMDGYTIAFGIRNVTHIEKALAEA 193 (288)
Q Consensus 117 ~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~D~v~~~~~l~~~~~~~~~l~~~ 193 (288)
|+.+++.+|.+..-....+......++. ++.++...++.... ..+.||+|++.. +.....++.-+
T Consensus 93 ------p~~~v~Lves~~KK~~FL~~v~~~L~L~--n~~i~~~R~E~~~~~~~~~~~~D~v~sRA----va~l~~ll~~~ 160 (239)
T d1xdza_ 93 ------PHLHVTIVDSLNKRITFLEKLSEALQLE--NTTFCHDRAETFGQRKDVRESYDIVTARA----VARLSVLSELC 160 (239)
T ss_dssp ------TTCEEEEEESCHHHHHHHHHHHHHHTCS--SEEEEESCHHHHTTCTTTTTCEEEEEEEC----CSCHHHHHHHH
T ss_pred ------CCccceeecchHHHHHHHHHHHHHhCCC--CcEEEeehhhhccccccccccceEEEEhh----hhCHHHHHHHH
Confidence 5789999999999888888888887874 88998888876532 235799999854 45788899999
Q ss_pred HhhccCCcEEEEE
Q 036563 194 YRVLKRGGRFLCL 206 (288)
Q Consensus 194 ~~~L~pgG~l~i~ 206 (288)
.++++++|.+++.
T Consensus 161 ~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 161 LPLVKKNGLFVAL 173 (239)
T ss_dssp GGGEEEEEEEEEE
T ss_pred hhhcccCCEEEEE
Confidence 9999999999863
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.74 E-value=3.4e-08 Score=78.40 Aligned_cols=126 Identities=22% Similarity=0.283 Sum_probs=96.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
++++..+.+.+++.++|..+|.|..+..+++.. ++++++|.++.+++.+++.. . +
T Consensus 8 ~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~-------------------~~viaiD~D~~ai~~a~~~~-----~-~ 62 (182)
T d1wg8a2 8 QEALDLLAVRPGGVYVDATLGGAGHARGILERG-------------------GRVIGLDQDPEAVARAKGLH-----L-P 62 (182)
T ss_dssp HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT-------------------CEEEEEESCHHHHHHHHHTC-----C-T
T ss_pred HHHHHhcCCCCCCEEEEeCCCCcHHHHHHhccc-------------------CcEEEEhhhhhHHHHHhhcc-----c-c
Confidence 456677888899999999999999999998863 79999999999999887642 1 5
Q ss_pred ceEEEEcccccCC-----CCCCCeeEEEeccccccc--c-------CHHHHHHHHHhhccCCcEEEEEeccCCChHHHHH
Q 036563 153 SLLWVEGDAEALC-----FEDSTMDGYTIAFGIRNV--T-------HIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKE 218 (288)
Q Consensus 153 ~v~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~--~-------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~ 218 (288)
++.+++.++.++. ...+.+|.|++...+... . .....|......|+|||.++++.+...+...+..
T Consensus 63 ~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~ 142 (182)
T d1wg8a2 63 GLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKR 142 (182)
T ss_dssp TEEEEESCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHH
T ss_pred ceeEeehHHHHHHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHH
Confidence 8999998877652 344679999987754322 1 2355788999999999999998886655545555
Q ss_pred HHHHh
Q 036563 219 LYDYY 223 (288)
Q Consensus 219 ~~~~~ 223 (288)
++...
T Consensus 143 ~~~e~ 147 (182)
T d1wg8a2 143 FLRES 147 (182)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 54443
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.70 E-value=4.1e-08 Score=78.14 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=80.1
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+.+|||+.||||.++..++.+. ...++.+|.+...++..++++...+.......+...|+.
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRG------------------A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~ 104 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQ------------------AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSL 104 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT------------------CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHH
T ss_pred ccceEeecccCccceeeeeeeec------------------ceeeEEeecccchhhhHhhHHhhhccccccccccccccc
Confidence 36799999999999999999885 369999999999999999998887765345666767654
Q ss_pred cC---CCCCCCeeEEEeccccccccCHHHHHHHHH--hhccCCcEEEE
Q 036563 163 AL---CFEDSTMDGYTIAFGIRNVTHIEKALAEAY--RVLKRGGRFLC 205 (288)
Q Consensus 163 ~~---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i 205 (288)
.. ......||+|++...... ......+..+. .+|+++|.+++
T Consensus 105 ~~l~~~~~~~~fDlIFlDPPY~~-~~~~~~l~~l~~~~~L~~~~liii 151 (183)
T d2ifta1 105 DFLKQPQNQPHFDVVFLDPPFHF-NLAEQAISLLCENNWLKPNALIYV 151 (183)
T ss_dssp HHTTSCCSSCCEEEEEECCCSSS-CHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ccccccccCCcccEEEechhHhh-hhHHHHHHHHHHhCCcCCCcEEEE
Confidence 32 233457999999887643 33556677665 47999998875
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=2.6e-07 Score=78.44 Aligned_cols=123 Identities=19% Similarity=0.214 Sum_probs=91.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCC
Q 036563 70 LWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGY 149 (288)
Q Consensus 70 ~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 149 (288)
.-....+..+...++.+|||+++|+|.=+..+++.. .+..++++|+++..+...++++...+.
T Consensus 89 ~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~-----------------~~~~i~a~d~~~~R~~~l~~~~~r~g~ 151 (284)
T d1sqga2 89 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-----------------PEAQVVAVDIDEQRLSRVYDNLKRLGM 151 (284)
T ss_dssp HHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHC-----------------TTCEEEEEESSTTTHHHHHHHHHHTTC
T ss_pred ccccccccccCccccceeEeccCccccchhhhhhhh-----------------hhhhhhhhhcchhhhhhHhhhhhcccc
Confidence 334455667788899999999999999999998875 358899999999999999999998887
Q ss_pred CCCceEEEEcccccC-CCCCCCeeEEEeccc------cccccCH----------------HHHHHHHHhhccCCcEEEEE
Q 036563 150 PDKSLLWVEGDAEAL-CFEDSTMDGYTIAFG------IRNVTHI----------------EKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 150 ~~~~v~~~~~d~~~~-~~~~~~~D~v~~~~~------l~~~~~~----------------~~~l~~~~~~L~pgG~l~i~ 206 (288)
. ++.....|.... ......||.|++... +..-++. .++|.++.+.|+|||+++..
T Consensus 152 ~--~~~~~~~~~~~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYs 229 (284)
T d1sqga2 152 K--ATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYA 229 (284)
T ss_dssp C--CEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred c--ceeeeccccccchhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 4 455554443322 123457999998544 2222221 44788999999999999987
Q ss_pred eccCC
Q 036563 207 ELSHV 211 (288)
Q Consensus 207 ~~~~~ 211 (288)
.++..
T Consensus 230 TCS~~ 234 (284)
T d1sqga2 230 TCSVL 234 (284)
T ss_dssp ESCCC
T ss_pred eecCc
Confidence 77654
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.68 E-value=2.6e-07 Score=77.94 Aligned_cols=107 Identities=19% Similarity=0.128 Sum_probs=83.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEcc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~d 160 (288)
.+.+||-||.|.|..+..++++. +..+++++|+++++++.+++.+... .+.++++.++.+|
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~-----------------~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D 137 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHP-----------------SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDD 137 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-----------------TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESC
T ss_pred CcceEEecCCCCcHHHHHHHhcC-----------------CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEech
Confidence 45799999999999999998874 3579999999999999999987532 2345799999999
Q ss_pred cccC-CCCCCCeeEEEecccccccc--C--HHHHHHHHHhhccCCcEEEEE
Q 036563 161 AEAL-CFEDSTMDGYTIAFGIRNVT--H--IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 161 ~~~~-~~~~~~~D~v~~~~~l~~~~--~--~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+... ...+++||+|++...-..-. . -..+++.+++.|+|||.++..
T Consensus 138 ~~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 138 GFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp SHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence 8664 33456899999865421111 1 367899999999999999864
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.68 E-value=2.3e-08 Score=86.24 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=82.5
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc---CCCCCceEEEE
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER---GYPDKSLLWVE 158 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~---~~~~~~v~~~~ 158 (288)
+.+.+||.||+|.|..+..+++.. +..+++++|+++.+++.+++.+... ...+++++++.
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~-----------------~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~ 138 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHP-----------------TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVI 138 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-----------------TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcC-----------------CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEE
Confidence 345799999999999999888774 4579999999999999999987532 12347899999
Q ss_pred cccccC-CCCCCCeeEEEecccccc-ccC------HHHHHHHHHhhccCCcEEEEE
Q 036563 159 GDAEAL-CFEDSTMDGYTIAFGIRN-VTH------IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 159 ~d~~~~-~~~~~~~D~v~~~~~l~~-~~~------~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+|+... ...+++||+|++...-.. ... ...+++.+++.|+|||.+++.
T Consensus 139 ~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 139 DDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp SCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred chHHHHhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 998765 233567999997553111 111 267899999999999999863
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.68 E-value=2.6e-08 Score=84.40 Aligned_cols=108 Identities=14% Similarity=0.131 Sum_probs=81.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC--------CCCCc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG--------YPDKS 153 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--------~~~~~ 153 (288)
+++.+||-+|+|.|..+..+++. +..+++++|+++.+++.+++.+.... ..+++
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~------------------~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~r 132 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQH------------------DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEK 132 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS------------------CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSS
T ss_pred CCCceEEEecCCchHHHHHHHHh------------------CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCC
Confidence 44579999999999999888765 34689999999999999998664221 22378
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccccccccC----HHHHHHHHHhhccCCcEEEEEe
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVTH----IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
++++.+|+...--.+++||+|++...-..-.. -..+++.+++.|+|||.+++..
T Consensus 133 v~i~~~Da~~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 133 AKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEESCHHHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEChHHHHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 99999998765333568999998654221111 2578999999999999998643
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.68 E-value=2.4e-07 Score=78.90 Aligned_cols=107 Identities=18% Similarity=0.228 Sum_probs=81.7
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEcc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~d 160 (288)
.+.+||-||.|.|..+..++++. +..+++++|+++.+++.+++.+... .+.+++++++.+|
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~-----------------~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~D 151 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHD-----------------SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIAN 151 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTST-----------------TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESC
T ss_pred CCceEEEecCCchHHHHHHHhcC-----------------CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhh
Confidence 45799999999999999888874 3578999999999999999876432 2334799999999
Q ss_pred cccC-CCCCCCeeEEEeccccccc-c----CHHHHHHHHHhhccCCcEEEEE
Q 036563 161 AEAL-CFEDSTMDGYTIAFGIRNV-T----HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 161 ~~~~-~~~~~~~D~v~~~~~l~~~-~----~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+... ...+++||+|++...-... + --..+++.+++.|+|||.+++.
T Consensus 152 a~~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 152 GAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp HHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 8764 3345679999986542211 1 1267899999999999999864
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.65 E-value=8.6e-08 Score=77.99 Aligned_cols=109 Identities=19% Similarity=0.106 Sum_probs=80.4
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP 150 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 150 (288)
..+.|+..+...++.+|||.|||+|.++..+.+... ....++++|+++..+..+
T Consensus 7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~----------------~~~~i~g~ei~~~~~~~~---------- 60 (223)
T d2ih2a1 7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHG----------------TAYRFVGVEIDPKALDLP---------- 60 (223)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHC----------------SCSEEEEEESCTTTCCCC----------
T ss_pred HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhcc----------------ccceEEeeecCHHHHhhc----------
Confidence 446678888888889999999999999988887764 457899999998764322
Q ss_pred CCceEEEEcccccCCCCCCCeeEEEecccccccc----------------------------C-HHHHHHHHHhhccCCc
Q 036563 151 DKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT----------------------------H-IEKALAEAYRVLKRGG 201 (288)
Q Consensus 151 ~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~----------------------------~-~~~~l~~~~~~L~pgG 201 (288)
.......+|..... ....||+++++..+.... + ...++....+.|++||
T Consensus 61 -~~~~~~~~~~~~~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G 138 (223)
T d2ih2a1 61 -PWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGG 138 (223)
T ss_dssp -TTEEEEESCGGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEE
T ss_pred -ccceeeeeehhccc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCC
Confidence 24566777766544 345799999987753221 0 1345788899999999
Q ss_pred EEEEEe
Q 036563 202 RFLCLE 207 (288)
Q Consensus 202 ~l~i~~ 207 (288)
++.++-
T Consensus 139 ~~~~I~ 144 (223)
T d2ih2a1 139 VLVFVV 144 (223)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 988654
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.64 E-value=3e-07 Score=82.55 Aligned_cols=160 Identities=16% Similarity=0.106 Sum_probs=104.7
Q ss_pred HHHHHHHhHhhHHHhhhhhhhh--hhhhHHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccc
Q 036563 43 QLVSNVFSSVAKNYDLMNDLMS--GGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDD 120 (288)
Q Consensus 43 ~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~ 120 (288)
..+.++|+.+-..+....+.-. .-..+...+.|++.+.+.++.+|+|.+||+|.+...+.+.......... ...
T Consensus 120 d~~g~~yE~ll~~~~~~~~k~~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~----~~~ 195 (425)
T d2okca1 120 DVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKE----KRD 195 (425)
T ss_dssp HHHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCH----HHH
T ss_pred hHHHHHHHHHHHHHHHhhhccchhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchh----hhh
Confidence 4456667666555432211100 1112456678888888888899999999999999999887631110000 000
Q ss_pred cCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEecccccccc----------------
Q 036563 121 LQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVT---------------- 184 (288)
Q Consensus 121 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~---------------- 184 (288)
......++|+|+++.+...++.++.-.+.......+...|..... +...||+|+++..+....
T Consensus 196 ~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~ 274 (425)
T d2okca1 196 FLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETK 274 (425)
T ss_dssp HHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCS
T ss_pred hhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccc
Confidence 001245899999999999999887766655345567777765432 456799999998874221
Q ss_pred C-HHHHHHHHHhhccCCcEEEEEe
Q 036563 185 H-IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 185 ~-~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+ -..++..+...|++||++.++-
T Consensus 275 ~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 275 NNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp CHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEe
Confidence 0 1348999999999999987653
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.62 E-value=1.1e-08 Score=85.11 Aligned_cols=88 Identities=8% Similarity=0.164 Sum_probs=73.2
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+.+++.+...++.+|||||||+|.++..+++.. .+++++|+++.+++.++++....
T Consensus 18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~-------------------~~v~aIE~D~~l~~~l~~~~~~~---- 74 (245)
T d1yuba_ 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-------------------KQVTSIELDSHLFNLSSEKLKLN---- 74 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-------------------SEEEESSSSCSSSSSSSCTTTTC----
T ss_pred HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhc-------------------CceeEeeecccchhhhhhhhhhc----
Confidence 4567788888888999999999999999999874 79999999999988877665443
Q ss_pred CceEEEEcccccCCCCCCCeeEEEecccccc
Q 036563 152 KSLLWVEGDAEALCFEDSTMDGYTIAFGIRN 182 (288)
Q Consensus 152 ~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 182 (288)
+++.++.+|+.+++++....+.|+++...+-
T Consensus 75 ~n~~ii~~D~l~~~~~~~~~~~vv~NLPY~I 105 (245)
T d1yuba_ 75 TRVTLIHQDILQFQFPNKQRYKIVGNIPYHL 105 (245)
T ss_dssp SEEEECCSCCTTTTCCCSSEEEEEEECCSSS
T ss_pred cchhhhhhhhhccccccceeeeEeeeeehhh
Confidence 6899999999998888777777887776543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.59 E-value=2.8e-07 Score=78.84 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=80.5
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEcc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEGD 160 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~d 160 (288)
.+.+||-||.|.|..+..++++. +..+++.+|+++.+++.+++.+... ++.+++++++.+|
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~-----------------~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~D 168 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHE-----------------SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGD 168 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCT-----------------TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSC
T ss_pred CCCeEEEeCCCchHHHHHHHHcC-----------------CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEch
Confidence 45699999999999999998874 3579999999999999999986542 2335799999999
Q ss_pred cccC-CCCCCCeeEEEecccccccc----CHHHHHHHHHhhccCCcEEEEE
Q 036563 161 AEAL-CFEDSTMDGYTIAFGIRNVT----HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 161 ~~~~-~~~~~~~D~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
+... ....++||+|++...-..-. -...+++.+++.|+|||.++..
T Consensus 169 a~~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 169 GFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp HHHHHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 8764 23456899999865421111 1256899999999999999864
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.53 E-value=5.4e-07 Score=76.56 Aligned_cols=109 Identities=21% Similarity=0.259 Sum_probs=83.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~ 159 (288)
+.+.+||=||.|.|..+..+++.. +..+++++|+++++++.+++.+... ...+++++++.+
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~-----------------~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~ 141 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHA-----------------SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIG 141 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-----------------TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEES
T ss_pred CCCcceEEecCCchHHHHHHHhcc-----------------cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEc
Confidence 345799999999999999998875 3578999999999999999976432 233479999999
Q ss_pred ccccC--CCCCCCeeEEEeccccccc-c-C--HHHHHHHHHhhccCCcEEEEEe
Q 036563 160 DAEAL--CFEDSTMDGYTIAFGIRNV-T-H--IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 160 d~~~~--~~~~~~~D~v~~~~~l~~~-~-~--~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
|+... ...+++||+|++...-..- . . -..+++.+++.|+|||.+++..
T Consensus 142 Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 142 DGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp CHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cHHHHHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 97654 2345689999985542111 1 1 2678999999999999999753
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=3.6e-07 Score=77.47 Aligned_cols=110 Identities=20% Similarity=0.214 Sum_probs=82.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--CCCCCceEEEEc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER--GYPDKSLLWVEG 159 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~v~~~~~ 159 (288)
+.+.+||-||.|.|..+..+++.. +..+++++|+++.+++.+++.+... ...+++++++.+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~-----------------~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~ 139 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHP-----------------SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVG 139 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-----------------TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES
T ss_pred cCcCeEEEeCCCchHHHHHHHHcC-----------------CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEc
Confidence 345799999999999999998774 3579999999999999999887531 233479999999
Q ss_pred ccccC-CCCCCCeeEEEecccccc-cc-C--HHHHHHHHHhhccCCcEEEEEec
Q 036563 160 DAEAL-CFEDSTMDGYTIAFGIRN-VT-H--IEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 160 d~~~~-~~~~~~~D~v~~~~~l~~-~~-~--~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
|+... ....++||+|++...-.. .. . -..+++.+++.|+|||.+++...
T Consensus 140 Da~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 193 (285)
T d2o07a1 140 DGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 193 (285)
T ss_dssp CHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred cHHHHHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence 98664 234568999998653111 11 1 24579999999999999987543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.48 E-value=2.1e-06 Score=74.95 Aligned_cols=112 Identities=12% Similarity=0.159 Sum_probs=85.0
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+.+.+.+.+.+...++.+|||+-||+|.++..+++.. .+|+++|.++.+++.|+++...++
T Consensus 198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~-------------------~~V~gvE~~~~ai~~A~~na~~n~ 258 (358)
T d1uwva2 198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-------------------ASVVGVEGVPALVEKGQQNARLNG 258 (358)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-------------------SEEEEEESCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhhccCCCceEEEecccccccchhccccc-------------------cEEEeccCcHHHHHHHHHhHHhcc
Confidence 3444566777777788899999999999999998874 799999999999999999999888
Q ss_pred CCCCceEEEEcccccC----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 149 YPDKSLLWVEGDAEAL----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
+. |+.++.+|.+.. ......+|+|++...=... .+.++.+.+. +|.-.+++
T Consensus 259 i~--n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~---~~~~~~l~~~-~~~~ivYV 313 (358)
T d1uwva2 259 LQ--NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIKL-EPIRIVYV 313 (358)
T ss_dssp CC--SEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHHH-CCSEEEEE
T ss_pred cc--cceeeecchhhhhhhhhhhhccCceEEeCCCCccH---HHHHHHHHHc-CCCEEEEE
Confidence 84 899999988664 2234569999886653332 3456666554 55554443
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=3.1e-06 Score=71.91 Aligned_cols=118 Identities=15% Similarity=0.170 Sum_probs=88.0
Q ss_pred HHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 75 LVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
.+..+.+.++.+|||++||+|.-+.++++..+ +...++++|+++..++..++++...++. ++
T Consensus 86 ~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~----------------~~~~i~a~d~~~~R~~~l~~~l~r~g~~--~~ 147 (293)
T d2b9ea1 86 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLK----------------NQGKIFAFDLDAKRLASMATLLARAGVS--CC 147 (293)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHT----------------TCSEEEEEESCHHHHHHHHHHHHHTTCC--SE
T ss_pred cccccCCCccceEEecccchhhHHHHHHHHhc----------------CCceEeeecCCHHHHHHHHHHHHhcCcc--ce
Confidence 44566778899999999999999999988764 4689999999999999999999998884 89
Q ss_pred EEEEcccccCCCC---CCCeeEEEeccccccc------cC-----------H-------HHHHHHHHhhccCCcEEEEEe
Q 036563 155 LWVEGDAEALCFE---DSTMDGYTIAFGIRNV------TH-----------I-------EKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 155 ~~~~~d~~~~~~~---~~~~D~v~~~~~l~~~------~~-----------~-------~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.+...|...+... .+.||.|++....... ++ . ..+|..+. .++|||.++...
T Consensus 148 ~~~~~d~~~~~~~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsT 226 (293)
T d2b9ea1 148 ELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYST 226 (293)
T ss_dssp EEEECCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEE
T ss_pred eeeehhhhhhcccccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEee
Confidence 9999998776422 2569999986442111 00 0 12344444 478999988777
Q ss_pred ccCC
Q 036563 208 LSHV 211 (288)
Q Consensus 208 ~~~~ 211 (288)
.+..
T Consensus 227 CSl~ 230 (293)
T d2b9ea1 227 CSLC 230 (293)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7654
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.43 E-value=8e-07 Score=70.17 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=78.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
.++.+|||+||++|.++..+.+..+ +...++++|+.+- ... +++.++.+|+
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~----------------~~~~v~~vDl~~~-----------~~i--~~~~~~~~d~ 71 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIG----------------GKGRIIACDLLPM-----------DPI--VGVDFLQGDF 71 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHC----------------TTCEEEEEESSCC-----------CCC--TTEEEEESCT
T ss_pred CCCCeEEEEeccCCcceEEEEeecc----------------ccceEEEeecccc-----------ccc--CCceEeeccc
Confidence 5678999999999999999998875 4588999998662 112 5788999998
Q ss_pred ccCC--------CCCCCeeEEEeccccccccC-----------HHHHHHHHHhhccCCcEEEEEeccCCChHHHH
Q 036563 162 EALC--------FEDSTMDGYTIAFGIRNVTH-----------IEKALAEAYRVLKRGGRFLCLELSHVDIPVFK 217 (288)
Q Consensus 162 ~~~~--------~~~~~~D~v~~~~~l~~~~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~ 217 (288)
.... ....++|+|++..+..-..+ ....+.-+.++|++||.+++=-+.......+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~ 146 (180)
T d1ej0a_ 72 RDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYL 146 (180)
T ss_dssp TSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHH
T ss_pred ccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHH
Confidence 6531 34567999999887543321 13467778899999999998666655433333
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1.1e-06 Score=73.90 Aligned_cols=90 Identities=19% Similarity=0.308 Sum_probs=72.6
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
....+.+++.+...++..|||||+|+|.++..+++.. .+++++|+++.+++..++.+....
T Consensus 7 ~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-------------------~~v~aiE~D~~l~~~L~~~~~~~~ 67 (278)
T d1zq9a1 7 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-------------------KKVVACELDPRLVAELHKRVQGTP 67 (278)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-------------------SEEEEEESCHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC-------------------CcEEEEEEccchhHHHHHHHhhhc
Confidence 3455677788888888899999999999999999874 799999999999999998876654
Q ss_pred CCCCceEEEEcccccCCCCCCCeeEEEecccc
Q 036563 149 YPDKSLLWVEGDAEALCFEDSTMDGYTIAFGI 180 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l 180 (288)
.. .++.++.+|+....++. ++.|+.+...
T Consensus 68 ~~-~~~~~i~~D~l~~~~~~--~~~vV~NLPY 96 (278)
T d1zq9a1 68 VA-SKLQVLVGDVLKTDLPF--FDTCVANLPY 96 (278)
T ss_dssp TG-GGEEEEESCTTTSCCCC--CSEEEEECCG
T ss_pred cc-cchhhhHHHHhhhhhhh--hhhhhcchHH
Confidence 33 58999999998776543 5677776654
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=5.2e-06 Score=76.22 Aligned_cols=138 Identities=14% Similarity=0.042 Sum_probs=87.4
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhh-cccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQ-DVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
+.+.+.|++.+.+.++.+|+|.+||+|.+...+.+........... .-..........++|+|+++.+...++.++.-.
T Consensus 150 ~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~ 229 (524)
T d2ar0a1 150 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH 229 (524)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh
Confidence 4456788888888888899999999999998887765311100000 000000001236899999999999998877655
Q ss_pred CCCCCc----eEEEEcccccC-CCCCCCeeEEEecccccccc-------------C-HHHHHHHHHhhccCCcEEEEEe
Q 036563 148 GYPDKS----LLWVEGDAEAL-CFEDSTMDGYTIAFGIRNVT-------------H-IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 148 ~~~~~~----v~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~~-------------~-~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+.. .+ ..+...+.... .....+||+|+++..+.... + -..++.++.+.|++||++.++-
T Consensus 230 ~~~-~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 230 DIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 307 (524)
T ss_dssp TCC-CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc-ccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence 433 11 12233332211 12345799999998764221 1 1348999999999999988653
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=1.7e-06 Score=71.94 Aligned_cols=74 Identities=15% Similarity=0.245 Sum_probs=61.7
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 69 RLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
+...+.+++.+...++..|||||||+|.++..+++.. .+++++|+++.+.+..++.....
T Consensus 7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-------------------~~v~aiEiD~~l~~~L~~~~~~~- 66 (252)
T d1qyra_ 7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-------------------DQLTVIELDRDLAARLQTHPFLG- 66 (252)
T ss_dssp HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-------------------SCEEEECCCHHHHHHHHTCTTTG-
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccC-------------------CceEEEEeccchhHHHHHHhhhc-
Confidence 3445677888888888999999999999999999874 78999999999999887754433
Q ss_pred CCCCceEEEEcccccCC
Q 036563 149 YPDKSLLWVEGDAEALC 165 (288)
Q Consensus 149 ~~~~~v~~~~~d~~~~~ 165 (288)
+++.++.+|+..++
T Consensus 67 ---~~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 67 ---PKLTIYQQDAMTFN 80 (252)
T ss_dssp ---GGEEEECSCGGGCC
T ss_pred ---cchhHHhhhhhhhc
Confidence 68999999998764
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.11 E-value=1.9e-06 Score=70.66 Aligned_cols=110 Identities=11% Similarity=0.096 Sum_probs=70.6
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
++++..+. +.+|||||++.|..+..+++.+.. ..+.++++++|+++........ . ..
T Consensus 73 ~eli~~~K---Pk~ILEIGv~~GgS~~~~a~~l~~-------------~~~~~kI~giDId~~~~~~~~~---~----~~ 129 (232)
T d2bm8a1 73 HDMLWELR---PRTIVELGVYNGGSLAWFRDLTKI-------------MGIDCQVIGIDRDLSRCQIPAS---D----ME 129 (232)
T ss_dssp HHHHHHHC---CSEEEEECCTTSHHHHHHHHHHHH-------------TTCCCEEEEEESCCTTCCCCGG---G----CT
T ss_pred HHHHHHhC---CCEEEEECCCCchHHHHHHHHHHh-------------cCCCceEEecCcChhhhhhhhc---c----cc
Confidence 34445443 468999999999888776654410 0146899999998754322111 1 15
Q ss_pred ceEEEEcccccCC----CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 153 SLLWVEGDAEALC----FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 153 ~v~~~~~d~~~~~----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
++.++.+|..+.. +....+|+|+.... |.......-+ ...++|++||++++-+
T Consensus 130 ~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 130 NITLHQGDCSDLTTFEHLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp TEEEEECCSSCSGGGGGGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred ceeeeecccccHHHHHHHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEc
Confidence 8999999876542 33446888887654 4333223333 4568999999998644
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.96 E-value=1.8e-05 Score=69.21 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=78.2
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC-----------
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD----------- 151 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~----------- 151 (288)
.+.+|||..||+|..+...+.+.+ ..+|++.|+|+..++.+++++..++..+
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~-----------------~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~ 107 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETP-----------------AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILK 107 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-----------------CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEE
T ss_pred CCCEEEEcCCCccHHHHHHHHhCC-----------------CCEEEEecCCHHHHHHHHHHHHhcCcccccccccccccc
Confidence 357999999999999998888763 4689999999999999999988775431
Q ss_pred --CceEEEEcccccCC-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 152 --KSLLWVEGDAEALC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 152 --~~v~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..+.....|+..+- .....||+|.+.. +-.+..+|..+.+.++.||.+.+.
T Consensus 108 ~~~~~~~~~~Da~~~~~~~~~~fDvIDiDP----fGs~~pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 108 GEKTIVINHDDANRLMAERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp SSSEEEEEESCHHHHHHHSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred ccceeEeehhhhhhhhHhhcCcCCcccCCC----CCCcHHHHHHHHHHhccCCEEEEE
Confidence 12445555554331 2245699998754 345677999999999999999864
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.68 E-value=0.0002 Score=58.23 Aligned_cols=115 Identities=12% Similarity=0.033 Sum_probs=68.6
Q ss_pred HHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 74 RLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
++.+.....+.++|+|+|||+|.++..++... +...+.++++--.-.+ .-......++ +-
T Consensus 57 ~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~-----------------~v~~V~g~~iG~d~~e-~P~~~~~~~~--ni 116 (257)
T d2p41a1 57 WFVERNLVTPEGKVVDLGCGRGGWSYYCGGLK-----------------NVREVKGLTKGGPGHE-EPIPMSTYGW--NL 116 (257)
T ss_dssp HHHHTTSSCCCEEEEEETCTTSHHHHHHHTST-----------------TEEEEEEECCCSTTSC-CCCCCCSTTG--GG
T ss_pred HHHHhcCccCCCeEEEecCCCChHHHHHHhhc-----------------CCCceeEEEecCcccc-CCcccccccc--cc
Confidence 34455556778899999999999999998774 2467778877322100 0000000010 12
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccccccccCH-------HHHHHHHHhhccCCcEEEEEeccC
Q 036563 154 LLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHI-------EKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 154 v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~-------~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+.+...+.. ...+....|+|+|..+-. ..++ .++|+-+.+.|+|||.|++--+.+
T Consensus 117 ~~~~~~~dv-~~l~~~~~D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p 178 (257)
T d2p41a1 117 VRLQSGVDV-FFIPPERCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 178 (257)
T ss_dssp EEEECSCCT-TTSCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred ccchhhhhH-HhcCCCcCCEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence 333332211 223567899999987633 2222 346777889999999988755543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.57 E-value=0.0002 Score=55.80 Aligned_cols=106 Identities=21% Similarity=0.209 Sum_probs=69.2
Q ss_pred HHhhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 75 LVSKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
+.+....+++.+||-+|||. |..+..+++..+ ..+|+++|.+++.++.+++. +.
T Consensus 20 l~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~G-----------------a~~Vi~~~~~~~~~~~a~~l----Ga---- 74 (182)
T d1vj0a2 20 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLG-----------------AENVIVIAGSPNRLKLAEEI----GA---- 74 (182)
T ss_dssp HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTT-----------------BSEEEEEESCHHHHHHHHHT----TC----
T ss_pred HHHHhCCCCCCEEEEECCCccchhheecccccc-----------------cccccccccccccccccccc----cc----
Confidence 33445567889999999985 888888888763 13899999999999888654 11
Q ss_pred eEEEEc---ccccC-----C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCC
Q 036563 154 LLWVEG---DAEAL-----C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHV 211 (288)
Q Consensus 154 v~~~~~---d~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 211 (288)
..++.. +..+. . .....+|+|+-.-. ....++...+.|++||+++++....+
T Consensus 75 ~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~vG------~~~~~~~a~~~l~~~G~iv~~G~~~~ 135 (182)
T d1vj0a2 75 DLTLNRRETSVEERRKAIMDITHGRGADFILEATG------DSRALLEGSELLRRGGFYSVAGVAVP 135 (182)
T ss_dssp SEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSS------CTTHHHHHHHHEEEEEEEEECCCCSC
T ss_pred eEEEeccccchHHHHHHHHHhhCCCCceEEeecCC------chhHHHHHHHHhcCCCEEEEEeecCC
Confidence 122211 11110 0 12335999874321 23457888999999999987655443
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.49 E-value=0.00096 Score=57.43 Aligned_cols=126 Identities=14% Similarity=0.137 Sum_probs=77.4
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE---EEcc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW---VEGD 160 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~---~~~d 160 (288)
..+|.|+||.+|..+..+....=. .++-...-+-..-++...++.-|.-.+.....-+.+....-. ...-| +.+.
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~-~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~-~~~~f~~gvpGS 129 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIK-TVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV-DGVCFINGVPGS 129 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHH-HHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSC-TTCEEEEEEESC
T ss_pred ceEEEEeCCCCCccHHHHHHHHHH-HHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccC-CCCeEEEecCCc
Confidence 367999999999877544443200 000000000001235678899998777766665555432211 11223 3344
Q ss_pred cccCCCCCCCeeEEEeccccccccC---------------------------------HHHHHHHHHhhccCCcEEEEEe
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVTH---------------------------------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~~---------------------------------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
+-.--+|.++.+++++..++|++.. ...+|+.-.+-|+|||.++++-
T Consensus 130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 4444588999999999999988631 1347888889999999999876
Q ss_pred ccCC
Q 036563 208 LSHV 211 (288)
Q Consensus 208 ~~~~ 211 (288)
+..+
T Consensus 210 ~gr~ 213 (359)
T d1m6ex_ 210 LGRR 213 (359)
T ss_dssp EECS
T ss_pred eccC
Confidence 6554
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.36 E-value=0.001 Score=50.83 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=68.9
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
+....+++.+||-+|||+ |..+..+++.. +++++++|.+++.++.+++.-. ...
T Consensus 20 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~------------------Ga~vi~v~~~~~r~~~a~~~ga-------~~~ 74 (170)
T d1e3ja2 20 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAY------------------GAFVVCTARSPRRLEVAKNCGA-------DVT 74 (170)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT------------------TCEEEEEESCHHHHHHHHHTTC-------SEE
T ss_pred HHhCCCCCCEEEEEcccccchhhHhhHhhh------------------cccccccchHHHHHHHHHHcCC-------cEE
Confidence 455677888999999985 77777777775 4899999999999988876421 122
Q ss_pred EEEcccccCC----------CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 156 WVEGDAEALC----------FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 156 ~~~~d~~~~~----------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+. .+..... .....+|+|+-.- .....+..+.+.|+++|++++.....
T Consensus 75 ~~-~~~~~~~~~~~~~~~~~~~g~g~D~vid~~------g~~~~~~~a~~~~~~~G~iv~~G~~~ 132 (170)
T d1e3ja2 75 LV-VDPAKEEESSIIERIRSAIGDLPNVTIDCS------GNEKCITIGINITRTGGTLMLVGMGS 132 (170)
T ss_dssp EE-CCTTTSCHHHHHHHHHHHSSSCCSEEEECS------CCHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred Ee-ccccccccchhhhhhhcccccCCceeeecC------CChHHHHHHHHHHhcCCceEEEecCC
Confidence 22 2111100 1124588887322 23567888899999999999865443
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.18 E-value=0.0017 Score=49.89 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=70.6
Q ss_pred HHhhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 75 LVSKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
+......+++.+||=+|||. |..+..+++..+ ...++++|.++.-++.+++. + -
T Consensus 20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g-----------------~~~v~~~~~~~~k~~~a~~~----G----a 74 (174)
T d1f8fa2 20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCG-----------------ASIIIAVDIVESRLELAKQL----G----A 74 (174)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHT-----------------CSEEEEEESCHHHHHHHHHH----T----C
T ss_pred HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccc-----------------cceeeeeccHHHHHHHHHHc----C----C
Confidence 45566778899999999986 667777777763 35788999999988888764 1 1
Q ss_pred eEEEEcccccC-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 154 LLWVEGDAEAL-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 154 v~~~~~d~~~~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
..++..+-.+. ...++.+|+|+-.- .....++.+.++++|+|+++++..
T Consensus 75 ~~~i~~~~~~~~~~i~~~t~gg~D~vid~~------G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 75 THVINSKTQDPVAAIKEITDGGVNFALEST------GSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp SEEEETTTSCHHHHHHHHTTSCEEEEEECS------CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred eEEEeCCCcCHHHHHHHHcCCCCcEEEEcC------CcHHHHHHHHhcccCceEEEEEee
Confidence 23343332221 12345799987322 235678889999999999987543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.0053 Score=46.62 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=65.8
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
+....+++.+||=+|||. |.++..+++.. +++++++|.+++.++.+++. +. ..
T Consensus 24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~------------------Ga~~i~~~~~~~~~~~a~~l----Ga----d~ 77 (168)
T d1uufa2 24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAM------------------GAHVVAFTTSEAKREAAKAL----GA----DE 77 (168)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHT------------------TCEEEEEESSGGGHHHHHHH----TC----SE
T ss_pred HHhCCCCCCEEEEeccchHHHHHHHHhhcc------------------cccchhhccchhHHHHHhcc----CC----cE
Confidence 456678899999999986 77888888876 37888999999888777653 21 12
Q ss_pred EEEcccccC-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 156 WVEGDAEAL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 156 ~~~~d~~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
++...-... ......+|.++-.-.- ...+....+.++++|++++..
T Consensus 78 ~i~~~~~~~~~~~~~~~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 78 VVNSRNADEMAAHLKSFDFILNTVAA------PHNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp EEETTCHHHHHTTTTCEEEEEECCSS------CCCHHHHHTTEEEEEEEEECC
T ss_pred EEECchhhHHHHhcCCCceeeeeeec------chhHHHHHHHHhcCCEEEEec
Confidence 232221111 1223569988754321 223666789999999999854
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.10 E-value=0.002 Score=48.97 Aligned_cols=99 Identities=22% Similarity=0.219 Sum_probs=64.3
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
+....+++.+||=+|+|. |..+..+++.. +.+++++|.+++.++.+++. +. ..
T Consensus 21 ~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~------------------G~~Vi~~~~~~~~~~~a~~~----Ga----~~ 74 (166)
T d1llua2 21 KQTNARPGQWVAISGIGGLGHVAVQYARAM------------------GLHVAAIDIDDAKLELARKL----GA----SL 74 (166)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT------------------TCEEEEEESCHHHHHHHHHT----TC----SE
T ss_pred HHhCCCCCCEEEEeeccccHHHHHHHHHHc------------------CCccceecchhhHHHhhhcc----Cc----cc
Confidence 445677888999999986 77777777775 38999999999988887653 21 22
Q ss_pred EEEcccccC-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 156 WVEGDAEAL-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 156 ~~~~d~~~~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
++...-.+. ....+.+|.|.+.. ....+....+.|+|+|+++++..
T Consensus 75 ~i~~~~~~~~~~~~~~~~g~~~~i~~~~-------~~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 75 TVNARQEDPVEAIQRDIGGAHGVLVTAV-------SNSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp EEETTTSCHHHHHHHHHSSEEEEEECCS-------CHHHHHHHHTTEEEEEEEEECCC
T ss_pred cccccchhHHHHHHHhhcCCcccccccc-------cchHHHHHHHHhcCCcEEEEEEe
Confidence 332221111 01122234444322 23567888999999999998644
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.99 E-value=0.0019 Score=49.76 Aligned_cols=104 Identities=14% Similarity=0.078 Sum_probs=69.7
Q ss_pred HhhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 76 VSKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 76 ~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
++....+++.+||=+|||. |..+..+++..+ ..+++++|.+++.++.+++.- . .
T Consensus 20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-----------------a~~Vi~~d~~~~r~~~a~~lG----a----~ 74 (174)
T d1jqba2 20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLRG-----------------AGRIIGVGSRPICVEAAKFYG----A----T 74 (174)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTT-----------------CSCEEEECCCHHHHHHHHHHT----C----S
T ss_pred HHHhCCCCCCEEEEEcCCcchhhhhhhhhccc-----------------ccccccccchhhhHHHHHhhC----c----c
Confidence 3556678889999999997 888888888763 247999999999888887541 1 1
Q ss_pred EEEEcccccC-----C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 155 LWVEGDAEAL-----C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 155 ~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.++...-.+. . .....+|+|+-.-. ....++...+.++|+|.++++....
T Consensus 75 ~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g------~~~~~~~a~~~~~~~G~iv~~G~~~ 130 (174)
T d1jqba2 75 DILNYKNGHIEDQVMKLTNGKGVDRVIMAGG------GSETLSQAVKMVKPGGIISNINYHG 130 (174)
T ss_dssp EEECGGGSCHHHHHHHHTTTSCEEEEEECSS------CTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred ccccccchhHHHHHHHHhhccCcceEEEccC------CHHHHHHHHHHHhcCCEEEEEeecC
Confidence 2222211111 1 12345999874332 2345777889999999999865443
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.98 E-value=0.0019 Score=49.23 Aligned_cols=101 Identities=17% Similarity=0.089 Sum_probs=66.2
Q ss_pred hcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEE
Q 036563 78 KLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLW 156 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~ 156 (288)
....+++.+||-+|+|. |..+..+++..+ ++++++|.+++.++.+++. +. -.+
T Consensus 22 ~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G------------------~~vi~~~~~~~k~~~a~~l----Ga----~~~ 75 (168)
T d1piwa2 22 RNGCGPGKKVGIVGLGGIGSMGTLISKAMG------------------AETYVISRSSRKREDAMKM----GA----DHY 75 (168)
T ss_dssp HTTCSTTCEEEEECCSHHHHHHHHHHHHHT------------------CEEEEEESSSTTHHHHHHH----TC----SEE
T ss_pred HhCcCCCCEEEEECCCCcchhHHHHhhhcc------------------ccccccccchhHHHHhhcc----CC----cEE
Confidence 45677899999999984 788888888763 8999999999999888764 21 122
Q ss_pred EEcc-ccc-CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEec
Q 036563 157 VEGD-AEA-LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLEL 208 (288)
Q Consensus 157 ~~~d-~~~-~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 208 (288)
+... -.+ .....+.+|.++..-.-.+.. .+....+.|+|+|+++++..
T Consensus 76 i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~----~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 76 IATLEEGDWGEKYFDTFDLIVVCASSLTDI----DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp EEGGGTSCHHHHSCSCEEEEEECCSCSTTC----CTTTGGGGEEEEEEEEECCC
T ss_pred eeccchHHHHHhhhcccceEEEEecCCccc----hHHHHHHHhhccceEEEecc
Confidence 2221 111 112235699887543221111 14457899999999998654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.0036 Score=47.69 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=68.4
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
++....++.+||=+|||+ |..+..+++..+ ..+++++|.++..++.+++. +. -.
T Consensus 20 ~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G-----------------~~~Vi~~d~~~~rl~~a~~~----Ga----~~ 74 (171)
T d1pl8a2 20 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG-----------------AAQVVVTDLSATRLSKAKEI----GA----DL 74 (171)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-----------------CSEEEEEESCHHHHHHHHHT----TC----SE
T ss_pred HHhCCCCCCEEEEECCCccHHHHHHHHHHcC-----------------CceEEeccCCHHHHHHHHHh----CC----cc
Confidence 445677888999999987 667777777653 24899999999999988764 11 11
Q ss_pred EEEcccccCC--------CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 156 WVEGDAEALC--------FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 156 ~~~~d~~~~~--------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
+...+-.+.. -....+|+|+-.- .....++...+.+++||++++.....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~------G~~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 75 VLQISKESPQEIARKVEGQLGCKPEVTIECT------GAEASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp EEECSSCCHHHHHHHHHHHHTSCCSEEEECS------CCHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred cccccccccccccccccccCCCCceEEEecc------CCchhHHHHHHHhcCCCEEEEEecCC
Confidence 2222211110 0123589887432 23567888999999999999865543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.86 E-value=0.0041 Score=48.72 Aligned_cols=108 Identities=18% Similarity=0.130 Sum_probs=71.1
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
+....+++.+||-+|||. |..+..+++..+ ..+++++|.++..++.+++.- -..
T Consensus 19 ~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~g-----------------a~~Vi~~d~~~~rl~~a~~~G--------a~~ 73 (195)
T d1kola2 19 VTAGVGPGSTVYVAGAGPVGLAAAASARLLG-----------------AAVVIVGDLNPARLAHAKAQG--------FEI 73 (195)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHTT-----------------CSEEEEEESCHHHHHHHHHTT--------CEE
T ss_pred HHhCCCCCCEEEEECcCHHHHHHHHHHHhhc-----------------ccceeeecccchhhHhhhhcc--------ccE
Confidence 456778899999999998 667777777653 468999999999998887642 112
Q ss_pred EEEcccccC-----CC-CCCCeeEEEeccccc---------cccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 156 WVEGDAEAL-----CF-EDSTMDGYTIAFGIR---------NVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 156 ~~~~d~~~~-----~~-~~~~~D~v~~~~~l~---------~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
.+...-.++ .. ....+|+++-.-... ........++.+.+.++|+|++.++...
T Consensus 74 ~~~~~~~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~ 142 (195)
T d1kola2 74 ADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY 142 (195)
T ss_dssp EETTSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred EEeCCCcCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence 221111111 01 233589988533211 1112457899999999999999986543
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.74 E-value=0.0023 Score=54.31 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=48.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+..|||||+|.|.++..+++..+ ..+++++|+++...+..++.... .++.++.+|+.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~-----------------~~~v~~iE~D~~~~~~L~~~~~~-----~~~~ii~~D~l 100 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYC-----------------PRQYSLLEKRSSLYKFLNAKFEG-----SPLQILKRDPY 100 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC-----------------CSEEEEECCCHHHHHHHHHHTTT-----SSCEEECSCTT
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-----------------CCEEEEEECCHHHHHHHHHhccC-----CCcEEEeCchh
Confidence 466899999999999999998752 25899999999999988876542 57889999876
Q ss_pred c
Q 036563 163 A 163 (288)
Q Consensus 163 ~ 163 (288)
.
T Consensus 101 ~ 101 (322)
T d1i4wa_ 101 D 101 (322)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.69 E-value=0.017 Score=43.71 Aligned_cols=98 Identities=14% Similarity=0.202 Sum_probs=65.5
Q ss_pred CCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEc
Q 036563 81 PFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEG 159 (288)
Q Consensus 81 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~ 159 (288)
.+|+.+||=+|+|. |..+..+++..+ ...++++|.+++.++.+++.. ...++..
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g-----------------~~~vv~~~~~~~k~~~~~~~g--------a~~~i~~ 84 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMT-----------------PATVIALDVKEEKLKLAERLG--------ADHVVDA 84 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHC-----------------CCEEEEEESSHHHHHHHHHTT--------CSEEEET
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhc-----------------CcccccccchhHHHHHHhhcc--------cceeecC
Confidence 46788999999987 666677777653 368899999998888777542 1233333
Q ss_pred ccccC----C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 160 DAEAL----C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 160 d~~~~----~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
+-+.. . .....+|+|+-.. .....++...+.|+++|+++++...
T Consensus 85 ~~~~~~~~~~~~~~~g~d~vid~~------g~~~~~~~a~~~l~~~G~iv~~G~~ 133 (172)
T d1h2ba2 85 RRDPVKQVMELTRGRGVNVAMDFV------GSQATVDYTPYLLGRMGRLIIVGYG 133 (172)
T ss_dssp TSCHHHHHHHHTTTCCEEEEEESS------CCHHHHHHGGGGEEEEEEEEECCCS
T ss_pred cccHHHHHHHhhCCCCceEEEEec------CcchHHHHHHHHHhCCCEEEEEeCc
Confidence 21111 0 1234589887432 2345688899999999999986543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.65 E-value=0.011 Score=44.79 Aligned_cols=103 Identities=20% Similarity=0.235 Sum_probs=68.1
Q ss_pred hhcCCCCCCeEEEecC-C-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAG-G-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
......++.+||=+|| | .|..+..+++..+ ..+++++|.+++.++.+++. +. .
T Consensus 21 ~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-----------------~~~V~~~~~~~~~~~~~~~~----Ga----~ 75 (170)
T d1jvba2 21 RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-----------------GATIIGVDVREEAVEAAKRA----GA----D 75 (170)
T ss_dssp HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHT-----------------CCEEEEEESSHHHHHHHHHH----TC----S
T ss_pred HHhCCCCCCEEEEEeccccceeeeeecccccc-----------------cccccccccchhhHHHHHHc----CC----c
Confidence 4566778889999997 4 4666666777653 36899999999988888764 11 1
Q ss_pred EEEEcccccC-----C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccC
Q 036563 155 LWVEGDAEAL-----C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSH 210 (288)
Q Consensus 155 ~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 210 (288)
.++..+-.+. . -....+|+++-.. .....++...+.++|+|+++++....
T Consensus 76 ~~i~~~~~~~~~~~~~~~~~~~~d~vid~~------g~~~~~~~a~~~l~~~G~iv~~G~~~ 131 (170)
T d1jvba2 76 YVINASMQDPLAEIRRITESKGVDAVIDLN------NSEKTLSVYPKALAKQGKYVMVGLFG 131 (170)
T ss_dssp EEEETTTSCHHHHHHHHTTTSCEEEEEESC------CCHHHHTTGGGGEEEEEEEEECCSSC
T ss_pred eeeccCCcCHHHHHHHHhhcccchhhhccc------ccchHHHhhhhhcccCCEEEEecccc
Confidence 2232222211 0 1234599888432 23556778899999999999865543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.56 E-value=0.012 Score=45.05 Aligned_cols=104 Identities=15% Similarity=0.066 Sum_probs=71.2
Q ss_pred HHhhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 75 LVSKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
+......+++.+||=+|||. |..+..+++..+ ...++++|.++..++.+++.- -
T Consensus 20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-----------------a~~Vi~~d~~~~r~~~a~~~G--------a 74 (174)
T d1e3ia2 20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAG-----------------ASRIIAIDINGEKFPKAKALG--------A 74 (174)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTT-----------------CSEEEEECSCGGGHHHHHHTT--------C
T ss_pred HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhC-----------------CceeeeeccchHHHHHHHHhC--------C
Confidence 34556678899999999998 889999988874 357999999999888887642 1
Q ss_pred eEEEEccccc-C------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEEecc
Q 036563 154 LLWVEGDAEA-L------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCLELS 209 (288)
Q Consensus 154 v~~~~~d~~~-~------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~~ 209 (288)
..++...-.+ . ......+|+++-. ......+....+.++++ |.++++...
T Consensus 75 ~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~------~G~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 75 TDCLNPRELDKPVQDVITELTAGGVDYSLDC------AGTAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp SEEECGGGCSSCHHHHHHHHHTSCBSEEEES------SCCHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred CcccCCccchhhhhhhHhhhhcCCCcEEEEe------cccchHHHHHHHHhhcCCeEEEecCCC
Confidence 1222211111 0 0123468988732 23466788999999996 999986543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.50 E-value=0.0098 Score=44.76 Aligned_cols=99 Identities=19% Similarity=0.182 Sum_probs=62.6
Q ss_pred hhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceE
Q 036563 77 SKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLL 155 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~ 155 (288)
......|+.+||=.|+|+ |.....+++.. +.+++++|.+++.++.+++. +. .
T Consensus 21 ~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~------------------g~~v~~~~~~~~r~~~~k~~----Ga-----~ 73 (168)
T d1rjwa2 21 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAM------------------GLNVVAVDIGDEKLELAKEL----GA-----D 73 (168)
T ss_dssp HHHTCCTTCEEEEECCSTTHHHHHHHHHHT------------------TCEEEEECSCHHHHHHHHHT----TC-----S
T ss_pred HHhCCCCCCEEEEeecccchhhhhHHHhcC------------------CCeEeccCCCHHHhhhhhhc----Cc-----c
Confidence 344567889999999987 66666666664 47899999999988877653 21 1
Q ss_pred EEEccccc-C-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 156 WVEGDAEA-L-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 156 ~~~~d~~~-~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
........ . ....+.+|.|+. .. -...+....+.|+|+|.+++....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~------~~~~~~~a~~~l~~~G~i~~~g~~ 126 (168)
T d1rjwa2 74 LVVNPLKEDAAKFMKEKVGGVHAAVVT-AV------SKPAFQSAYNSIRRGGACVLVGLP 126 (168)
T ss_dssp EEECTTTSCHHHHHHHHHSSEEEEEES-SC------CHHHHHHHHHHEEEEEEEEECCCC
T ss_pred eecccccchhhhhcccccCCCceEEee-cC------CHHHHHHHHHHhccCCceEecccc
Confidence 11111111 1 012223444432 21 245688899999999999986543
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.46 E-value=0.006 Score=49.57 Aligned_cols=91 Identities=10% Similarity=0.012 Sum_probs=62.8
Q ss_pred HHHhhcCCCCC--CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC-
Q 036563 74 RLVSKLNPFPG--MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP- 150 (288)
Q Consensus 74 ~~~~~l~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~- 150 (288)
.+.+.+..+++ .+|||.-||.|..+..++... ++|+++|.++.+....+..+......
T Consensus 77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G-------------------~~V~~iEr~p~l~~ll~d~l~r~~~~~ 137 (250)
T d2oyra1 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG-------------------CRVRMLERNPVVAALLDDGLARGYADA 137 (250)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHT-------------------CCEEEEECCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCC-------------------CEEEEEccCHHHHHHHHHHHHHHHhCc
Confidence 34455544333 489999999999999998763 89999999997665554443221100
Q ss_pred ------CCceEEEEcccccC-CCCCCCeeEEEeccccccc
Q 036563 151 ------DKSLLWVEGDAEAL-CFEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 151 ------~~~v~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~ 183 (288)
..+++++.+|..+. .-..+.||+|++...+.+-
T Consensus 138 ~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIYlDPMFp~~ 177 (250)
T d2oyra1 138 EIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_dssp TTHHHHHHHEEEEESCHHHHSTTCSSCCSEEEECCCCCCC
T ss_pred hhHHHHhhhheeecCcHHHHHhccCCCCCEEEECCCCccc
Confidence 03789999997553 3334579999998887544
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.27 E-value=0.0021 Score=48.95 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=70.9
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccc
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDA 161 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~ 161 (288)
++.+|+=+|+|. |..+...+..++ +.++++|.+++.++..+..... ++.+...+-
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lG------------------A~V~~~D~~~~~l~~l~~~~~~------~~~~~~~~~ 86 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLG------------------AQVQIFDINVERLSYLETLFGS------RVELLYSNS 86 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT------------------CEEEEEESCHHHHHHHHHHHGG------GSEEEECCH
T ss_pred CCcEEEEECCChHHHHHHHHHhhCC------------------CEEEEEeCcHHHHHHHHHhhcc------cceeehhhh
Confidence 567999999997 888888888874 9999999999999888776643 455555544
Q ss_pred ccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEE
Q 036563 162 EALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 162 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
+.+...-...|+|+..-.+..-.-+.-+=+++.+.+|||..++
T Consensus 87 ~~l~~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 87 AEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp HHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred hhHHHhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEE
Confidence 3332112358999987665444444444567889999999886
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.018 Score=43.67 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=66.2
Q ss_pred HHhhcCCCCCCeEEEecC-C-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 75 LVSKLNPFPGMKHLDVAG-G-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+....+++.+||-.|+ | .|..+..+++.. ++++++++.+++..+.+++. +..
T Consensus 20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~------------------G~~vi~~~~~~~~~~~~~~~----Ga~-- 75 (174)
T d1yb5a2 20 LIHSACVKAGESVLVHGASGGVGLAACQIARAY------------------GLKILGTAGTEEGQKIVLQN----GAH-- 75 (174)
T ss_dssp HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHT------------------TCEEEEEESSHHHHHHHHHT----TCS--
T ss_pred HHHHhCCCCCCEEEEEecccccccccccccccc------------------Cccccccccccccccccccc----Ccc--
Confidence 445556778999999996 3 477788888776 48999999888777766542 221
Q ss_pred ceEEEEcccccC------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 153 SLLWVEGDAEAL------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 153 ~v~~~~~d~~~~------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.++...-.++ ......+|+|+.... ...++...+.|+|+|.++++.
T Consensus 76 --~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 76 --EVFNHREVNYIDKIKKYVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp --EEEETTSTTHHHHHHHHHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred --cccccccccHHHHhhhhhccCCceEEeeccc-------HHHHHHHHhccCCCCEEEEEe
Confidence 2222111111 112456999985332 346788899999999999754
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.06 E-value=0.042 Score=41.69 Aligned_cols=106 Identities=12% Similarity=0.002 Sum_probs=66.7
Q ss_pred HHhhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 75 LVSKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
+.+....+++.+||=+|||. |..+..+++..+ ..+++++|.+++.++.+++.- .
T Consensus 19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G-----------------~~~Vi~~d~~~~kl~~a~~lG--------a 73 (174)
T d1p0fa2 19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAG-----------------ASRIIGVGTHKDKFPKAIELG--------A 73 (174)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-----------------CSEEEEECSCGGGHHHHHHTT--------C
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcC-----------------CceeeccCChHHHHHHHHHcC--------C
Confidence 44556778899999999986 667777777763 368999999999999887642 1
Q ss_pred eEEEEcccccC-------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccC-CcEEEEEeccCC
Q 036563 154 LLWVEGDAEAL-------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKR-GGRFLCLELSHV 211 (288)
Q Consensus 154 v~~~~~d~~~~-------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~i~~~~~~ 211 (288)
..++...-.+. ......+|.++-.- .....+......+++ +|.++++....+
T Consensus 74 ~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~------g~~~~~~~~~~~~~~~~G~~v~vG~~~~ 133 (174)
T d1p0fa2 74 TECLNPKDYDKPIYEVICEKTNGGVDYAVECA------GRIETMMNALQSTYCGSGVTVVLGLASP 133 (174)
T ss_dssp SEEECGGGCSSCHHHHHHHHTTSCBSEEEECS------CCHHHHHHHHHTBCTTTCEEEECCCCCT
T ss_pred cEEEcCCCchhHHHHHHHHhcCCCCcEEEEcC------CCchHHHHHHHHHHHhcCceEEEEEecC
Confidence 22232111110 11234588887422 234455556665654 699887655443
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=95.57 E-value=0.19 Score=41.49 Aligned_cols=103 Identities=18% Similarity=0.157 Sum_probs=67.9
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC-CCceEEEEccccc
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP-DKSLLWVEGDAEA 163 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~v~~~~~d~~~ 163 (288)
..|+.+|||-=.-...+ ... ++..++=+|. |++++.-++.+.+.+.. ..+...+..|+..
T Consensus 91 ~qvV~LGaGlDTr~~Rl-~~~-----------------~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 151 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRL-DWP-----------------TGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQ 151 (297)
T ss_dssp CEEEEETCTTCCHHHHS-CCC-----------------TTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred CeEEEeCcccCChhhhc-CCC-----------------cCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccc
Confidence 35777999976554433 111 3567788884 77877767777665443 2456677777764
Q ss_pred C--------CCCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEE
Q 036563 164 L--------CFEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 164 ~--------~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
. .+..+.--++++-.++.+++ +...+|+.+.+...||+.+++-
T Consensus 152 ~~~~~L~~~g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 152 DWPPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp CHHHHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred hHHHHHHhcCCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 2 12233455677777777775 4577899999999999998853
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.51 E-value=0.083 Score=40.05 Aligned_cols=105 Identities=12% Similarity=0.070 Sum_probs=64.6
Q ss_pred HHhhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 75 LVSKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
+.+....+++..|+=+|||. |..+..+++..+ ..+|+++|.+++.++.+++.-..
T Consensus 21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G-----------------~~~Vi~vd~~~~kl~~Ak~~GA~------- 76 (176)
T d1d1ta2 21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAG-----------------ASRIIGIDLNKDKFEKAMAVGAT------- 76 (176)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTT-----------------CSEEEEECSCGGGHHHHHHHTCS-------
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcC-----------------CceEEEecCcHHHHHHHHhcCCc-------
Confidence 44556678899999999986 667777777753 36899999999999999876322
Q ss_pred eEEEEc-ccccC------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 154 LLWVEG-DAEAL------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 154 v~~~~~-d~~~~------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
.++.. +.... ......+|.++-.. .........+..+++++|.++++...
T Consensus 77 -~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~-----g~~~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 77 -ECISPKDSTKPISEVLSEMTGNNVGYTFEVI-----GHLETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp -EEECGGGCSSCHHHHHHHHHTSCCCEEEECS-----CCHHHHHHHHTTSCTTTCEEEECSCC
T ss_pred -EEECccccchHHHHHHHHhccccceEEEEeC-----CchHHHHHHHHHhhcCCeEEEEEEcc
Confidence 22221 11110 01234588876322 22333333444455566999875543
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.23 E-value=0.025 Score=45.22 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=44.1
Q ss_pred HHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhh
Q 036563 73 DRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRAL 145 (288)
Q Consensus 73 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 145 (288)
+.+++... .++..|||.=||+|..+.++.+. +.+++|+|++++..+.|++++.
T Consensus 203 ~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~-------------------~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 203 ERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL-------------------GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT-------------------TCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCCEEEECCCCchHHHHHHHHc-------------------CCeEEEEeCCHHHHHHHHHHHc
Confidence 44555554 46789999999999999888776 4899999999999999999874
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=95.04 E-value=0.11 Score=44.30 Aligned_cols=60 Identities=10% Similarity=0.194 Sum_probs=41.3
Q ss_pred hhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhh
Q 036563 77 SKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALE 146 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 146 (288)
..+..++...|+|+|+|+|.++..++....... ..+ ...+++.+|.|+...+.-++.+..
T Consensus 73 ~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~-~~~---------~~~~~~~vE~s~~L~~~Q~~~l~~ 132 (365)
T d1zkda1 73 KAADEPQTLRLIEIGPGRGTMMADALRALRVLP-ILY---------QSLSVHLVEINPVLRQKQQTLLAG 132 (365)
T ss_dssp HHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSH-HHH---------TTEEEEEECCCHHHHHHHHHHSTT
T ss_pred HHhCCCccceEEecCCcccHHHHhhhhhhcccc-ccc---------ccceEEEeccchhHHHHHHHHhcc
Confidence 345555556899999999999988877653100 000 346799999999877766665543
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=94.96 E-value=0.038 Score=44.62 Aligned_cols=126 Identities=11% Similarity=-0.024 Sum_probs=78.6
Q ss_pred CCCCCCeEEEecCCccHHHHHHHHhhhhhhhh-----------hhhc-----cc-------ccccCCCceEEEEeCChhH
Q 036563 80 NPFPGMKHLDVAGGTGDVAFRILDTVNSIKRR-----------ALQD-----VL-------EDDLQEETRIYVCDINPNM 136 (288)
Q Consensus 80 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~-----------~~~~-----~~-------~~~~~~~~~v~~~D~s~~~ 136 (288)
.-..+..++|..||+|.+.+..+........+ .... .. ....+....+++.|+++.+
T Consensus 47 ~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~a 126 (249)
T d1o9ga_ 47 PGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEA 126 (249)
T ss_dssp SCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred cCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHH
Confidence 33445679999999999998876643211000 0000 00 0112223567899999999
Q ss_pred HHHHH---HHhhhcCCCCCceEEEEcccccCC-----CCCCCeeEEEeccccccc----cC-----HHHHHHHHHhhccC
Q 036563 137 LNVGK---KRALERGYPDKSLLWVEGDAEALC-----FEDSTMDGYTIAFGIRNV----TH-----IEKALAEAYRVLKR 199 (288)
Q Consensus 137 ~~~a~---~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~~D~v~~~~~l~~~----~~-----~~~~l~~~~~~L~p 199 (288)
++.++ .++...++. ..+.+...|+.+.. .+....++|++|.....- .+ ...+...+.+.+..
T Consensus 127 i~~A~~~r~n~~~Agl~-~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~ 205 (249)
T d1o9ga_ 127 AQAARRLRERLTAEGGA-LPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA 205 (249)
T ss_dssp HHHHHHHHHHHHHTTSS-CCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCC-ceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCC
Confidence 98884 577777776 77899999976542 123567999998874321 11 34566667777866
Q ss_pred CcEEEEE
Q 036563 200 GGRFLCL 206 (288)
Q Consensus 200 gG~l~i~ 206 (288)
...+++.
T Consensus 206 ~s~~~it 212 (249)
T d1o9ga_ 206 HAVIAVT 212 (249)
T ss_dssp TCEEEEE
T ss_pred CcEEEEe
Confidence 6666654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.88 E-value=0.22 Score=37.11 Aligned_cols=101 Identities=16% Similarity=0.066 Sum_probs=65.7
Q ss_pred HHhhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 75 LVSKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
+.+....+|+.+||=.|||. |..+..+++..+ ...++++|.++..++.+++.- .
T Consensus 20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-----------------~~~vi~~~~~~~k~~~ak~lG--------a 74 (176)
T d2fzwa2 20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG-----------------ASRIIGVDINKDKFARAKEFG--------A 74 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-----------------CSEEEEECSCGGGHHHHHHHT--------C
T ss_pred HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHh-----------------cCceEEEcccHHHHHHHHHhC--------C
Confidence 44566678899999999874 566666777663 368999999999888877642 1
Q ss_pred eEEEEcccc-cC------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 154 LLWVEGDAE-AL------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 154 v~~~~~d~~-~~------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..++...-. +. ......+|+|+-.- .....++.+...+++||.++++
T Consensus 75 ~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~------G~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 75 TECINPQDFSKPIQEVLIEMTDGGVDYSFECI------GNVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp SEEECGGGCSSCHHHHHHHHTTSCBSEEEECS------CCHHHHHHHHHTBCTTTCEEEE
T ss_pred cEEEeCCchhhHHHHHHHHHcCCCCcEeeecC------CCHHHHHHHHHhhcCCceeEEE
Confidence 222222111 10 01234689987432 2356788889999999877654
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.83 E-value=0.025 Score=46.72 Aligned_cols=56 Identities=14% Similarity=0.257 Sum_probs=45.7
Q ss_pred HHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 72 KDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 72 ~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
.+.+++... .++..|||.-||+|..+.++.+. +.+++|+|++++..+.+++++...
T Consensus 240 ~~rlI~~~s-~~gdiVlDpF~GSGTT~~AA~~l-------------------gR~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 240 PEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERE-------------------SRKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp HHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHT-------------------TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred HHHhhhhcc-cCCCEEEecCCCCcHHHHHHHHc-------------------CCcEEEEeCCHHHHHHHHHHHHhc
Confidence 345555554 46789999999999999888776 389999999999999999887654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.54 E-value=0.031 Score=42.91 Aligned_cols=104 Identities=15% Similarity=0.016 Sum_probs=64.2
Q ss_pred CCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCC-C---CceEEE
Q 036563 83 PGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYP-D---KSLLWV 157 (288)
Q Consensus 83 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~---~~v~~~ 157 (288)
++.+|+=||+|. |..+...+..++ +.++++|.++..++..++.....-.. . ...+-.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lG------------------A~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~ 89 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLG------------------AVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETA 89 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT------------------CEEEEECSCSTTHHHHHHTTCEECCC-----------
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcC------------------CEEEEEeccHHHHHHHHHhhcceEEEecccccccccc
Confidence 467999999997 777777777764 99999999999998887754321000 0 000000
Q ss_pred EcccccCC------------CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEE
Q 036563 158 EGDAEALC------------FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFL 204 (288)
Q Consensus 158 ~~d~~~~~------------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 204 (288)
.+.+..+. ..-...|+|+..-.+..-.-+.-+=+++.+.+|||..++
T Consensus 90 ~gyA~~~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 90 GGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp ------------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred ccchhhcCHHHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 00010000 001258999987766554444445567889999999886
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.49 E-value=0.12 Score=38.98 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=64.0
Q ss_pred HHhhcCCCCCCeEEEecC-C-ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 75 LVSKLNPFPGMKHLDVAG-G-TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~-G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+....+++.+||=.|+ | .|..+..+++..+ +++++++.+++..+.+++ .+.
T Consensus 17 l~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g------------------~~vi~~~~~~~~~~~l~~----~Ga--- 71 (183)
T d1pqwa_ 17 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIG------------------ARIYTTAGSDAKREMLSR----LGV--- 71 (183)
T ss_dssp HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHT------------------CEEEEEESSHHHHHHHHT----TCC---
T ss_pred HHHHhCCCCCCEEEEECCCCCcccccchhhcccc------------------ccceeeeccccccccccc----ccc---
Confidence 445556778889998774 3 4778888888764 888888878876666653 222
Q ss_pred ceEEEEcccccC-----C-CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 153 SLLWVEGDAEAL-----C-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 153 ~v~~~~~d~~~~-----~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
-..+...-.++ . .....+|+|+.... ...++.+.+.|+++|+++..
T Consensus 72 -~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 72 -EYVGDSRSVDFADEILELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp -SEEEETTCSTHHHHHHHHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred -cccccCCccCHHHHHHHHhCCCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEE
Confidence 12222221111 0 12356999986433 23577788999999999874
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.01 E-value=0.26 Score=36.84 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=65.5
Q ss_pred HHhhcCCCCCCeEEEecCC--ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 75 LVSKLNPFPGMKHLDVAGG--TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+.+....+++.+||=.|+| .|..+..+++.. ++++++++.+++..+.+++. +.
T Consensus 20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~------------------Ga~Vi~~~~s~~k~~~~~~l----Ga--- 74 (179)
T d1qora2 20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKAL------------------GAKLIGTVGTAQKAQSALKA----GA--- 74 (179)
T ss_dssp HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHH------------------TCEEEEEESSHHHHHHHHHH----TC---
T ss_pred HHHHhCCCCCCEEEEEccccccchHHHHHHHHh------------------CCeEeecccchHHHHHHHhc----CC---
Confidence 4445566788899888666 477888888876 48999999999988887754 21
Q ss_pred ceEEEEcccccCC-----C-CCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 153 SLLWVEGDAEALC-----F-EDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 153 ~v~~~~~d~~~~~-----~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
-..+...-.++. . ....+|+|+-... ...+......++++|.+++..
T Consensus 75 -~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 75 -WQVINYREEDLVERLKEITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp -SEEEETTTSCHHHHHHHHTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECC
T ss_pred -eEEEECCCCCHHHHHHHHhCCCCeEEEEeCcc-------HHHHHHHHHHHhcCCeeeecc
Confidence 123322212110 1 2346898875332 124677889999999987643
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.96 E-value=0.076 Score=42.83 Aligned_cols=57 Identities=25% Similarity=0.248 Sum_probs=46.4
Q ss_pred HHHHHHhhcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc
Q 036563 71 WKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER 147 (288)
Q Consensus 71 ~~~~~~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 147 (288)
+.+.+++... .++..|||.=||+|..+.++.+. +.+++|+|+++...+.+++++...
T Consensus 196 L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~l-------------------gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 196 VIERLVRALS-HPGSTVLDFFAGSGVTARVAIQE-------------------GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHH-------------------TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred HHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHh-------------------CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 3345555554 46889999999999999888776 389999999999999999998654
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.82 E-value=0.35 Score=36.38 Aligned_cols=101 Identities=16% Similarity=0.034 Sum_probs=67.1
Q ss_pred HHHhhcCCCCCCeEEEecCCc--cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 74 RLVSKLNPFPGMKHLDVAGGT--GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 74 ~~~~~l~~~~~~~vLDiG~G~--G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+.+..+.+++.+||=.|++. |..+..+++.. ++++++++-+++..+.+++. +.
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~------------------Ga~vi~~~~~~~~~~~~~~~----Ga-- 75 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK------------------GCKVVGAAGSDEKIAYLKQI----GF-- 75 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT------------------TCEEEEEESSHHHHHHHHHT----TC--
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc------------------CCEEEEeCCCHHHHHHHHhh----hh--
Confidence 344566778899999878754 66777777775 48999999888877766654 21
Q ss_pred CceEEEEcccccC------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 152 KSLLWVEGDAEAL------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 152 ~~v~~~~~d~~~~------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
-..+..+-++. ......+|+|+- .. . ...++...+.|+++|.+++..
T Consensus 76 --~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D-----~v-G-~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 76 --DAAFNYKTVNSLEEALKKASPDGYDCYFD-----NV-G-GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp --SEEEETTSCSCHHHHHHHHCTTCEEEEEE-----SS-C-HHHHHHHGGGEEEEEEEEECC
T ss_pred --hhhcccccccHHHHHHHHhhcCCCceeEE-----ec-C-chhhhhhhhhccCCCeEEeec
Confidence 22233222211 112346999873 22 2 356889999999999999753
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.09 E-value=0.1 Score=39.21 Aligned_cols=94 Identities=20% Similarity=0.246 Sum_probs=60.9
Q ss_pred hhcCCCCCCeEEEecC-Cc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCce
Q 036563 77 SKLNPFPGMKHLDVAG-GT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSL 154 (288)
Q Consensus 77 ~~l~~~~~~~vLDiG~-G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v 154 (288)
.....+|+.+||=.|+ |. |..+..+++.. ++++++++.+++.++.+++. +.+
T Consensus 21 ~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~------------------G~~vi~~~~~~~~~~~~~~l----Ga~---- 74 (171)
T d1iz0a2 21 KRAQARPGEKVLVQAAAGALGTAAVQVARAM------------------GLRVLAAASRPEKLALPLAL----GAE---- 74 (171)
T ss_dssp HHTTCCTTCEEEESSTTBHHHHHHHHHHHHT------------------TCEEEEEESSGGGSHHHHHT----TCS----
T ss_pred HHhCCCCCCEEEEEeccccchhhhhhhhccc------------------cccccccccccccccccccc----ccc----
Confidence 3456778899998885 43 67777788876 48999999988877777653 221
Q ss_pred EEEEcccccC---CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 155 LWVEGDAEAL---CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 155 ~~~~~d~~~~---~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
..+ |..+. .-....+|+|+-.. . ..+....+.|+|+|++++.
T Consensus 75 ~~i--~~~~~~~~~~~~~g~D~v~d~~--G------~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 75 EAA--TYAEVPERAKAWGGLDLVLEVR--G------KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEE--EGGGHHHHHHHTTSEEEEEECS--C------TTHHHHHTTEEEEEEEEEC
T ss_pred eee--ehhhhhhhhhcccccccccccc--c------hhHHHHHHHHhcCCcEEEE
Confidence 111 11111 01124599987421 1 1256778999999999874
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.05 E-value=0.7 Score=34.26 Aligned_cols=102 Identities=16% Similarity=0.070 Sum_probs=62.9
Q ss_pred HHhhcCCCCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 75 LVSKLNPFPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
+.+....+++.+||=+|+|. |..+..+++..+ ..+++++|.+++.++.+++.-.
T Consensus 20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g-----------------~~~Vi~~~~~~~k~~~a~~~Ga-------- 74 (176)
T d2jhfa2 20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAG-----------------AARIIGVDINKDKFAKAKEVGA-------- 74 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTT-----------------CSEEEEECSCGGGHHHHHHTTC--------
T ss_pred HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcC-----------------CceEEeecCcHHHHHHHHHhCC--------
Confidence 44556678899999999975 445555555552 4799999999999888876521
Q ss_pred eEEEEc-ccccC------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEEe
Q 036563 154 LLWVEG-DAEAL------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCLE 207 (288)
Q Consensus 154 v~~~~~-d~~~~------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~ 207 (288)
...+.. +..+. ....+.+|+++-... ....++.....++++ |.+++..
T Consensus 75 ~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G------~~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 75 TECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG------RLDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp SEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC------CHHHHHHHHHHBCTTTCEEEECS
T ss_pred eeEEecCCchhHHHHHHHHHhcCCCCEEEecCC------chhHHHHHHHHHhcCCcceEEec
Confidence 122211 11111 122346898874332 345566677788886 5555543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.86 E-value=0.3 Score=36.16 Aligned_cols=104 Identities=17% Similarity=0.138 Sum_probs=61.0
Q ss_pred eEEEecCCc-cH-HHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 86 KHLDVAGGT-GD-VAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 86 ~vLDiG~G~-G~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+|+=||||. |. ++..+.+.. ...+++++|.+++.++.+++.- .+.....+...
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g-----------------~~~~I~~~D~~~~~~~~a~~~~--------~~~~~~~~~~~ 57 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSG-----------------FKGKIYGYDINPESISKAVDLG--------IIDEGTTSIAK 57 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTT-----------------CCSEEEEECSCHHHHHHHHHTT--------SCSEEESCGGG
T ss_pred EEEEEccCHHHHHHHHHHHhcC-----------------CCeEEEEEECChHHHHHHHHhh--------cchhhhhhhhh
Confidence 577789875 33 444443332 2468999999999998887642 12222223222
Q ss_pred CCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHH
Q 036563 164 LCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYD 221 (288)
Q Consensus 164 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 221 (288)
. .....|+|+..-... .....+.++.+.++++..+. +...........+..
T Consensus 58 ~--~~~~~dlIila~p~~---~~~~vl~~l~~~~~~~~ii~--d~~s~k~~~~~~~~~ 108 (171)
T d2g5ca2 58 V--EDFSPDFVMLSSPVR---TFREIAKKLSYILSEDATVT--DQGSVKGKLVYDLEN 108 (171)
T ss_dssp G--GGTCCSEEEECSCHH---HHHHHHHHHHHHSCTTCEEE--ECCSCCTHHHHHHHH
T ss_pred h--hccccccccccCCch---hhhhhhhhhhcccccccccc--ccccccHHHHHHHHH
Confidence 2 223579988655432 35678888999998886654 344433444444333
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.51 E-value=1.1 Score=31.38 Aligned_cols=91 Identities=13% Similarity=0.157 Sum_probs=55.0
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
++|+=+|+ |.++..+++.+.. .+.+++++|.+++.++.+... ....++.+|..+.
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~---------------~g~~v~vid~d~~~~~~~~~~--------~~~~vi~Gd~~~~ 55 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSE---------------KGHDIVLIDIDKDICKKASAE--------IDALVINGDCTKI 55 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHH---------------TTCEEEEEESCHHHHHHHHHH--------CSSEEEESCTTSH
T ss_pred CEEEEECC--CHHHHHHHHHHHH---------------CCCCcceecCChhhhhhhhhh--------hhhhhccCcccch
Confidence 35666665 6677767666531 347899999999988776543 2467788988764
Q ss_pred C----CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEE
Q 036563 165 C----FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRF 203 (288)
Q Consensus 165 ~----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 203 (288)
. ..-+..|.+++...- ++....+....+.+.+.-.+
T Consensus 56 ~~l~~~~i~~a~~vv~~t~~---d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 56 KTLEDAGIEDADMYIAVTGK---EEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp HHHHHTTTTTCSEEEECCSC---HHHHHHHHHHHHHTTCCCEE
T ss_pred hhhhhcChhhhhhhcccCCc---HHHHHHHHHHHHHcCCceEE
Confidence 2 223468888763221 11122334455666776443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=92.42 E-value=0.38 Score=35.45 Aligned_cols=66 Identities=12% Similarity=-0.049 Sum_probs=42.6
Q ss_pred CceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEE
Q 036563 124 ETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRF 203 (288)
Q Consensus 124 ~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 203 (288)
+.+|++.|.+++.++.+++. + .+.....+.+.. ...|+|+..-.. .....+++++...++++..+
T Consensus 23 g~~V~~~d~~~~~~~~a~~~----~----~~~~~~~~~~~~----~~~DiIilavp~---~~~~~vl~~l~~~l~~~~iv 87 (165)
T d2f1ka2 23 GHYLIGVSRQQSTCEKAVER----Q----LVDEAGQDLSLL----QTAKIIFLCTPI---QLILPTLEKLIPHLSPTAIV 87 (165)
T ss_dssp TCEEEEECSCHHHHHHHHHT----T----SCSEEESCGGGG----TTCSEEEECSCH---HHHHHHHHHHGGGSCTTCEE
T ss_pred CCEEEEEECCchHHHHHHHh----h----ccceeeeecccc----cccccccccCcH---hhhhhhhhhhhhhcccccce
Confidence 47999999999887776543 1 122222333222 357998864432 24567889999988888866
Q ss_pred E
Q 036563 204 L 204 (288)
Q Consensus 204 ~ 204 (288)
+
T Consensus 88 ~ 88 (165)
T d2f1ka2 88 T 88 (165)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.99 E-value=0.85 Score=33.64 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=60.2
Q ss_pred HHhhcCCCCCCeEEEecCCcc-HHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCc
Q 036563 75 LVSKLNPFPGMKHLDVAGGTG-DVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKS 153 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G~G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 153 (288)
+.+....+++.+|+=+|+|.+ ..+..++... ....++++|.+++.++.+++. + -
T Consensus 20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~-----------------g~~~Vi~~~~~~~rl~~a~~~----G----A 74 (175)
T d1cdoa2 20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSA-----------------GAKRIIAVDLNPDKFEKAKVF----G----A 74 (175)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHT-----------------TCSEEEEECSCGGGHHHHHHT----T----C
T ss_pred HHHhhCCCCCCEEEEEecCCccchHHHHHHHH-----------------hhchheeecchHHHHHHHHHc----C----C
Confidence 445566788999999999984 4444455554 246899999999998888764 2 1
Q ss_pred eEEEEcccccC-------CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCC-cEEEEE
Q 036563 154 LLWVEGDAEAL-------CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRG-GRFLCL 206 (288)
Q Consensus 154 v~~~~~d~~~~-------~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~ 206 (288)
..++...-.+. ......+|+++-.- .....+......++++ |.+++.
T Consensus 75 d~~in~~~~~~~~~~~~~~~~~~G~d~vid~~------G~~~~~~~a~~~~~~g~~~~~~~ 129 (175)
T d1cdoa2 75 TDFVNPNDHSEPISQVLSKMTNGGVDFSLECV------GNVGVMRNALESCLKGWGVSVLV 129 (175)
T ss_dssp CEEECGGGCSSCHHHHHHHHHTSCBSEEEECS------CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred cEEEcCCCcchhHHHHHHhhccCCcceeeeec------CCHHHHHHHHHHhhCCCcceeEE
Confidence 23332211111 01234588886322 2344566667776665 544443
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.74 E-value=1 Score=35.82 Aligned_cols=81 Identities=14% Similarity=0.102 Sum_probs=55.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
+++.+|=.|++.|. +..+++.+.. .+++|+.+|.+++.++.+.+.+...+.+ .++.++.+|+.
T Consensus 9 k~Kv~lITGas~GI-G~aiA~~la~---------------~G~~Vv~~~r~~~~l~~~~~~l~~~~~~-~~~~~~~~Dls 71 (257)
T d1xg5a_ 9 RDRLALVTGASGGI-GAAVARALVQ---------------QGLKVVGCARTVGNIEELAAECKSAGYP-GTLIPYRCDLS 71 (257)
T ss_dssp TTCEEEEESTTSHH-HHHHHHHHHH---------------TTCEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEEECCTT
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHH---------------CCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEEccCC
Confidence 35678888877654 4444444321 4589999999999998888877776544 57888899987
Q ss_pred cCC----------CCCCCeeEEEecccc
Q 036563 163 ALC----------FEDSTMDGYTIAFGI 180 (288)
Q Consensus 163 ~~~----------~~~~~~D~v~~~~~l 180 (288)
+.. -.-+..|+++.+...
T Consensus 72 ~~~~v~~~v~~~~~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 72 NEEDILSMFSAIRSQHSGVDICINNAGL 99 (257)
T ss_dssp CHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEecccc
Confidence 631 112468988876543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.23 E-value=0.26 Score=37.22 Aligned_cols=105 Identities=13% Similarity=0.056 Sum_probs=64.3
Q ss_pred HHhhcCCCCCCeEEEecCC--ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCC
Q 036563 75 LVSKLNPFPGMKHLDVAGG--TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDK 152 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 152 (288)
+...-..+++.+||=-|++ .|.++..+++.. +++++++.-+++-.+.+++.-...
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~------------------Ga~Viat~~s~~k~~~~~~lGa~~----- 79 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKR------------------GYTVEASTGKAAEHDYLRVLGAKE----- 79 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHT------------------TCCEEEEESCTTCHHHHHHTTCSE-----
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHc------------------CCceEEecCchHHHHHHHhcccce-----
Confidence 3344445567788888864 467888888886 489999998888888776542211
Q ss_pred ceEEEEcccccC-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 153 SLLWVEGDAEAL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 153 ~v~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
-+.....+.+.. ....+.+|+|+=... ...+....+.|+|+|+++++...
T Consensus 80 vi~~~~~~~~~~~~~~~~gvD~vid~vg-------g~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 80 VLAREDVMAERIRPLDKQRWAAAVDPVG-------GRTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp EEECC---------CCSCCEEEEEECST-------TTTHHHHHHTEEEEEEEEECSCC
T ss_pred eeecchhHHHHHHHhhccCcCEEEEcCC-------chhHHHHHHHhCCCceEEEeecc
Confidence 111111111111 123457998873221 22477889999999999986554
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.78 E-value=0.18 Score=41.71 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=51.1
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCc-eEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEET-RIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
+++|+|+-||.|.+...+.+.. -.. -+.++|+++.+.+.-+.+. +....+.+|+.
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG-----------------~~~~~~~a~E~~~~a~~~~~~n~-------~~~~~~~~di~ 57 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESC-----------------IPAQVVAAIDVNTVANEVYKYNF-------PHTQLLAKTIE 57 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHT-----------------CSEEEEEEECCCHHHHHHHHHHC-------TTSCEECSCGG
T ss_pred CCEEEEcCcCccHHHHHHHHcC-----------------CCCeEEEEEECCHHHHHHHHHHC-------CCCCcccCchh
Confidence 4689999999999887665442 123 3678999998888777664 34556777877
Q ss_pred cCC---CCCCCeeEEEeccccccc
Q 036563 163 ALC---FEDSTMDGYTIAFGIRNV 183 (288)
Q Consensus 163 ~~~---~~~~~~D~v~~~~~l~~~ 183 (288)
++. ++...+|+++.......+
T Consensus 58 ~~~~~~~~~~~~Dll~ggpPCq~f 81 (343)
T d1g55a_ 58 GITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp GCCHHHHHHHCCSEEEECCC----
T ss_pred hCCHhHcCCCCccEEEeecccccc
Confidence 663 222358999987776554
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.72 E-value=1.2 Score=35.52 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=70.7
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
+++|.=|-.|++.++..+++.+... .+.+|+.++.+++.++.+.+.+...+ .++.++.+|+.+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~--------------~g~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dvs~ 64 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRL--------------FSGDVVLTARDVTRGQAAVQQLQAEG---LSPRFHQLDIDD 64 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHH--------------SSSEEEEEESSHHHHHHHHHHHHHTT---CCCEEEECCTTC
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHh--------------CCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEEecCC
Confidence 5677555445555555555543210 24799999999999988888877665 468899999876
Q ss_pred CC----------CCCCCeeEEEecccccccc---C----------------HHHHHHHHHhhccCCcEEEEEe
Q 036563 164 LC----------FEDSTMDGYTIAFGIRNVT---H----------------IEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 164 ~~----------~~~~~~D~v~~~~~l~~~~---~----------------~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
.. -.-+..|+++.+..+.... + ...+.+.+.+.|+++|.++.+.
T Consensus 65 ~~sv~~~~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 65 LQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 42 1124799999877643221 1 1234677788889999987643
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=89.60 E-value=1 Score=36.47 Aligned_cols=73 Identities=11% Similarity=0.116 Sum_probs=51.8
Q ss_pred CeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccC
Q 036563 85 MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEAL 164 (288)
Q Consensus 85 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 164 (288)
++|||+-||-|.+..-+.+.. -..+.++|+++.+.+.-+.+.. -.+..+|+.++
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG------------------~~~~~a~e~d~~a~~~~~~N~~--------~~~~~~Di~~~ 54 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAG------------------FRIICANEYDKSIWKTYESNHS--------AKLIKGDISKI 54 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHT------------------CEEEEEEECCHHHHHHHHHHCC--------SEEEESCTTTS
T ss_pred CeEEEeCcCcCHHHHHHHHCC------------------CEEEEEEeCCHHHHHHHHHHCC--------CCCccCChhhC
Confidence 479999999999987765542 2456799999988877766642 34567888876
Q ss_pred CCC-CCCeeEEEeccccccc
Q 036563 165 CFE-DSTMDGYTIAFGIRNV 183 (288)
Q Consensus 165 ~~~-~~~~D~v~~~~~l~~~ 183 (288)
... -...|+++.....+.+
T Consensus 55 ~~~~~~~~dll~~g~PCq~f 74 (324)
T d1dcta_ 55 SSDEFPKCDGIIGGPPCQSW 74 (324)
T ss_dssp CGGGSCCCSEEEECCCCTTT
T ss_pred CHhHcccccEEeeccccccc
Confidence 321 2358999987765544
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=88.89 E-value=1.4 Score=30.75 Aligned_cols=85 Identities=12% Similarity=0.153 Sum_probs=56.1
Q ss_pred CCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC----CC
Q 036563 92 GGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC----FE 167 (288)
Q Consensus 92 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~----~~ 167 (288)
||.|..+..+++.+. +..+..+|.++...+..+. .++.++.+|+.+.. ..
T Consensus 6 ~G~g~~g~~l~~~L~-----------------~~~i~vi~~d~~~~~~~~~---------~~~~~i~Gd~~~~~~L~~a~ 59 (129)
T d2fy8a1 6 CGWSESTLECLRELR-----------------GSEVFVLAEDENVRKKVLR---------SGANFVHGDPTRVSDLEKAN 59 (129)
T ss_dssp ESCCHHHHHHHHTSC-----------------GGGEEEEESCTTHHHHHHH---------TTCEEEESCTTSHHHHHHTT
T ss_pred ECCCHHHHHHHHHHc-----------------CCCCEEEEcchHHHHHHHh---------cCccccccccCCHHHHHHhh
Confidence 567888888888873 4678899999988776543 35788899986532 22
Q ss_pred CCCeeEEEeccccccccCHH-HHHHHHHhhccCCcEEEEE
Q 036563 168 DSTMDGYTIAFGIRNVTHIE-KALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 168 ~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i~ 206 (288)
-++.+.+++... ++.. ..+....+.+.|...+++.
T Consensus 60 i~~A~~vi~~~~----~d~~n~~~~~~~r~~~~~~~iia~ 95 (129)
T d2fy8a1 60 VRGARAVIVNLE----SDSETIHCILGIRKIDESVRIIAE 95 (129)
T ss_dssp CTTCSEEEECCS----SHHHHHHHHHHHHHHCSSSCEEEE
T ss_pred hhcCcEEEEecc----chhhhHHHHHHHHHHCCCceEEEE
Confidence 345777775332 1222 2344556778888887754
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=88.73 E-value=1.7 Score=30.24 Aligned_cols=86 Identities=14% Similarity=0.068 Sum_probs=49.9
Q ss_pred CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC----CCC
Q 036563 93 GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC----FED 168 (288)
Q Consensus 93 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~----~~~ 168 (288)
|-|.++..+++.+.. .+.+++++|.+++.++.++. .....+.+|..+.. ..-
T Consensus 7 G~G~~G~~la~~L~~---------------~g~~vvvid~d~~~~~~~~~---------~~~~~~~gd~~~~~~l~~a~i 62 (134)
T d2hmva1 7 GLGRFGGSIVKELHR---------------MGHEVLAVDINEEKVNAYAS---------YATHAVIANATEENELLSLGI 62 (134)
T ss_dssp CCSHHHHHHHHHHHH---------------TTCCCEEEESCHHHHHHTTT---------TCSEEEECCTTCTTHHHHHTG
T ss_pred CCCHHHHHHHHHHHH---------------CCCeEEEecCcHHHHHHHHH---------hCCcceeeecccchhhhccCC
Confidence 556777777776532 34789999999988776642 23456678876643 112
Q ss_pred CCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEE
Q 036563 169 STMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLC 205 (288)
Q Consensus 169 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 205 (288)
...|.+++...- .+....+....+.+.+...+++
T Consensus 63 ~~a~~vi~~~~~---~~~~~~~~~~~~~~~~~~~iia 96 (134)
T d2hmva1 63 RNFEYVIVAIGA---NIQASTLTTLLLKELDIPNIWV 96 (134)
T ss_dssp GGCSEEEECCCS---CHHHHHHHHHHHHHTTCSEEEE
T ss_pred ccccEEEEEcCc---hHHhHHHHHHHHHHcCCCcEEe
Confidence 347777654331 1122333444444556667664
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=88.63 E-value=0.79 Score=37.48 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=52.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.+++|||+-||-|.+...+.+.. -..+.++|+++.+.+.-+.+.... ..+|+.
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG------------------~~~v~a~e~d~~a~~~~~~N~~~~---------~~~Di~ 62 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCG------------------AECVYSNEWDKYAQEVYEMNFGEK---------PEGDIT 62 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTT------------------CEEEEEECCCHHHHHHHHHHHSCC---------CBSCGG
T ss_pred CCCeEEEECccccHHHHHHHHCC------------------CeEEEEEeCCHHHHHHHHHHCCCC---------CcCchh
Confidence 56899999999999988775542 234678999999998888776322 246776
Q ss_pred cCCCC-CCCeeEEEeccccccc
Q 036563 163 ALCFE-DSTMDGYTIAFGIRNV 183 (288)
Q Consensus 163 ~~~~~-~~~~D~v~~~~~l~~~ 183 (288)
++... -..+|+++.....+.+
T Consensus 63 ~~~~~~~~~~Dll~ggpPCq~f 84 (327)
T d2c7pa1 63 QVNEKTIPDHDILCAGFPCQAF 84 (327)
T ss_dssp GSCGGGSCCCSEEEEECCCTTT
T ss_pred cCchhhcceeeeeecccccchh
Confidence 65321 2358999987765444
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=88.47 E-value=0.47 Score=37.22 Aligned_cols=52 Identities=8% Similarity=0.013 Sum_probs=36.3
Q ss_pred EEEEcccccC--CCCCCCeeEEEeccccccc-------cC-------HHHHHHHHHhhccCCcEEEEE
Q 036563 155 LWVEGDAEAL--CFEDSTMDGYTIAFGIRNV-------TH-------IEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 155 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~~~-------~~-------~~~~l~~~~~~L~pgG~l~i~ 206 (288)
++.++|..+. .++++++|+|+.......- .+ ....++++.++|+|+|.+++.
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~ 73 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence 3677787553 4677889999987654211 11 245788999999999998753
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.68 E-value=7.2 Score=31.89 Aligned_cols=121 Identities=5% Similarity=-0.052 Sum_probs=69.2
Q ss_pred CCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhc--------------
Q 036563 82 FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALER-------------- 147 (288)
Q Consensus 82 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------------- 147 (288)
.+...|+-+|||.=.....+.+.. ++..++=+|. |+.++.=++.+...
T Consensus 95 ~~~~QVV~LGaG~DTr~~Rl~~~~-----------------~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~ 156 (328)
T d1rjda_ 95 NEKVQVVNLGCGSDLRMLPLLQMF-----------------PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDT 156 (328)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHC-----------------TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCC
T ss_pred CCCcEEEEeCCccchHHHHhhccC-----------------CCcEEEECCc-HHHHHHHHHHHHhchhhhhhcccccccc
Confidence 445679999999987777776654 3455666665 33333222222110
Q ss_pred -----CCCCCceEEEEcccccCC---------CCCCCeeEEEecccccccc--CHHHHHHHHHhhccCCcEEEEEeccC-
Q 036563 148 -----GYPDKSLLWVEGDAEALC---------FEDSTMDGYTIAFGIRNVT--HIEKALAEAYRVLKRGGRFLCLELSH- 210 (288)
Q Consensus 148 -----~~~~~~v~~~~~d~~~~~---------~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~- 210 (288)
....++...+..|+.+.. +..+..-++++=.++.+++ ...++|+.+.+... +|.+++-|...
T Consensus 157 ~~~~~~~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~~ 235 (328)
T d1rjda_ 157 AKSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIGG 235 (328)
T ss_dssp CCTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCC
T ss_pred ccccccCCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCCC
Confidence 001245677778876541 2233455777777777775 34567777777664 56666666653
Q ss_pred --CChHHHHHHHH
Q 036563 211 --VDIPVFKELYD 221 (288)
Q Consensus 211 --~~~~~~~~~~~ 221 (288)
|+..+-..+..
T Consensus 236 ~~p~D~FG~~M~~ 248 (328)
T d1rjda_ 236 SQPNDRFGAIMQS 248 (328)
T ss_dssp CSTTCCHHHHHHH
T ss_pred CCCCChHHHHHHH
Confidence 44444444333
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=86.29 E-value=0.93 Score=38.65 Aligned_cols=53 Identities=9% Similarity=0.076 Sum_probs=42.4
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcC
Q 036563 81 PFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERG 148 (288)
Q Consensus 81 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 148 (288)
..++..++||||-.|.++..++..... ...+|+++|+++...+..++++....
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~---------------~~~kV~aFEP~p~n~~~LkkNi~~n~ 262 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKG---------------KFERVWMIEPDRINLQTLQNVLRRYT 262 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTS---------------CCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCC---------------CCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence 456778999999999999888776520 23689999999999999988876554
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.91 E-value=0.28 Score=39.19 Aligned_cols=52 Identities=19% Similarity=0.129 Sum_probs=37.2
Q ss_pred EEEEcccccC--CCCCCCeeEEEecccccc-----------ccCHHHHHHHHHhhccCCcEEEEE
Q 036563 155 LWVEGDAEAL--CFEDSTMDGYTIAFGIRN-----------VTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 155 ~~~~~d~~~~--~~~~~~~D~v~~~~~l~~-----------~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
.++.+|..+. .++++++|+|+......- .......+.++.++|+|+|.+++.
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~ 70 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 70 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence 4566776553 467888999998776321 111366788999999999999874
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=84.85 E-value=1.5 Score=32.87 Aligned_cols=104 Identities=17% Similarity=0.092 Sum_probs=59.1
Q ss_pred HHhhcCCCCCCeEEEecCC---ccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 75 LVSKLNPFPGMKHLDVAGG---TGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 75 ~~~~l~~~~~~~vLDiG~G---~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
+......+|+.+||=+.+| .|..+..+++..+ ++++++--+++..+...+.+.+.+..
T Consensus 20 l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~G------------------a~vI~~v~~~~~~~~~~~~~~~lGad- 80 (189)
T d1gu7a2 20 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN------------------FNSISVIRDRPNLDEVVASLKELGAT- 80 (189)
T ss_dssp HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHT------------------CEEEEEECCCTTHHHHHHHHHHHTCS-
T ss_pred HHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcC------------------CeEEEEEecccccchHHhhhhhcccc-
Confidence 4455567777777776333 3667777777764 77777654544444444444444432
Q ss_pred CceEEEEc---ccccCC--------CCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEe
Q 036563 152 KSLLWVEG---DAEALC--------FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLE 207 (288)
Q Consensus 152 ~~v~~~~~---d~~~~~--------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 207 (288)
..+.. +..+.. .....+|+|+=. . . ...+....+.|+|+|+++...
T Consensus 81 ---~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~-----v-g-~~~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 81 ---QVITEDQNNSREFGPTIKEWIKQSGGEAKLALNC-----V-G-GKSSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp ---EEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEES-----S-C-HHHHHHHHHTSCTTCEEEECC
T ss_pred ---EEEeccccchhHHHHHHHHHHhhccCCceEEEEC-----C-C-cchhhhhhhhhcCCcEEEEEC
Confidence 22222 111110 013458888721 1 1 234677789999999998753
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=83.95 E-value=1.3 Score=32.72 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=60.7
Q ss_pred CCCCCeEEEecC--CccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEE
Q 036563 81 PFPGMKHLDVAG--GTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVE 158 (288)
Q Consensus 81 ~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~ 158 (288)
.+++.+||=-|+ |-|..+..+++..+ ++++++.-+++..+.+++.-.. .+ +..
T Consensus 21 ~~~~~~VLV~gaaGgVG~~avQlAk~~G------------------a~Viat~~s~~k~~~~~~lGad------~v-i~~ 75 (167)
T d1tt7a2 21 SPEKGSVLVTGATGGVGGIAVSMLNKRG------------------YDVVASTGNREAADYLKQLGAS------EV-ISR 75 (167)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHT------------------CCEEEEESSSSTHHHHHHHTCS------EE-EEH
T ss_pred CCCCCEEEEeCCcchHHHHHHHHHHHcC------------------CceEEEecCHHHHHHHHhhccc------ce-Eec
Confidence 344556776664 34778888888874 8999999888877777654211 11 111
Q ss_pred ccc--ccC-CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEecc
Q 036563 159 GDA--EAL-CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS 209 (288)
Q Consensus 159 ~d~--~~~-~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 209 (288)
.|. ... ....+.+|+|+=. .- ...+.+..+.|+|+|++++....
T Consensus 76 ~~~~~~~~~~~~~~gvd~vid~-----vg--g~~~~~~~~~l~~~G~iv~~G~~ 122 (167)
T d1tt7a2 76 EDVYDGTLKALSKQQWQGAVDP-----VG--GKQLASLLSKIQYGGSVAVSGLT 122 (167)
T ss_dssp HHHCSSCCCSSCCCCEEEEEES-----CC--THHHHHHHTTEEEEEEEEECCCS
T ss_pred cchhchhhhcccCCCceEEEec-----Cc--HHHHHHHHHHhccCceEEEeecc
Confidence 111 111 1234569988632 21 34678899999999999875443
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=83.37 E-value=7.2 Score=30.29 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=53.7
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
++.+|=.|++. .++..+++.+.. .+++|..+|.+++.++.+.+.+...+ .++.++.+|+.+
T Consensus 10 nKvalITGas~-GIG~a~a~~la~---------------~Ga~V~~~~r~~~~l~~~~~~l~~~g---~~~~~~~~Dvt~ 70 (251)
T d2c07a1 10 NKVALVTGAGR-GIGREIAKMLAK---------------SVSHVICISRTQKSCDSVVDEIKSFG---YESSGYAGDVSK 70 (251)
T ss_dssp SCEEEEESTTS-HHHHHHHHHHTT---------------TSSEEEEEESSHHHHHHHHHHHHTTT---CCEEEEECCTTC
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHH---------------cCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCC
Confidence 45566666655 466666666531 45899999999999888888776654 468888999876
Q ss_pred CC----------CCCCCeeEEEecccc
Q 036563 164 LC----------FEDSTMDGYTIAFGI 180 (288)
Q Consensus 164 ~~----------~~~~~~D~v~~~~~l 180 (288)
.. -.-+..|+++.+...
T Consensus 71 ~~~v~~~~~~~~~~~g~iDilvnnag~ 97 (251)
T d2c07a1 71 KEEISEVINKILTEHKNVDILVNNAGI 97 (251)
T ss_dssp HHHHHHHHHHHHHHCSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhcCCceeeeecccc
Confidence 31 112469988876654
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.01 E-value=7.1 Score=28.75 Aligned_cols=100 Identities=11% Similarity=-0.044 Sum_probs=59.8
Q ss_pred HhhcCCCCC--CeEEEec--CCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCC
Q 036563 76 VSKLNPFPG--MKHLDVA--GGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPD 151 (288)
Q Consensus 76 ~~~l~~~~~--~~vLDiG--~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 151 (288)
.+....+++ .+||=.| .|.|..+..+++..+ ...++++..+++......+.. +
T Consensus 21 ~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~G-----------------a~~vi~~~~~~e~~~~l~~~~---g--- 77 (187)
T d1vj1a2 21 QEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLG-----------------CSRVVGICGTQEKCLFLTSEL---G--- 77 (187)
T ss_dssp HHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTT-----------------CSEEEEEESSHHHHHHHHHHS---C---
T ss_pred HHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcC-----------------CcceecccchHHHHhhhhhcc---c---
Confidence 344444544 6788777 356999999999874 245777777766554443332 2
Q ss_pred CceEEEEcccccC-----CCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEE
Q 036563 152 KSLLWVEGDAEAL-----CFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 152 ~~v~~~~~d~~~~-----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 206 (288)
....+...-.++ ......+|+|+=.. . ...+....+.|+++|++++.
T Consensus 78 -ad~vi~~~~~~~~~~~~~~~~~GvDvv~D~v------G-g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 78 -FDAAVNYKTGNVAEQLREACPGGVDVYFDNV------G-GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp -CSEEEETTSSCHHHHHHHHCTTCEEEEEESS------C-HHHHHHHHTTEEEEEEEEEC
T ss_pred -ceEEeeccchhHHHHHHHHhccCceEEEecC------C-chhHHHHhhhccccccEEEe
Confidence 122232221111 11234699997222 1 34688899999999999874
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.39 E-value=3.3 Score=32.44 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=56.3
Q ss_pred CCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEccccc
Q 036563 84 GMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEA 163 (288)
Q Consensus 84 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 163 (288)
++.+|=-|++.| ++..+++.+.. .+++|..+|.+++.++.+.+.+...... .++.++.+|+.+
T Consensus 3 GKvalITGas~G-IG~aia~~la~---------------~Ga~V~i~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dv~~ 65 (254)
T d2gdza1 3 GKVALVTGAAQG-IGRAFAEALLL---------------KGAKVALVDWNLEAGVQCKAALHEQFEP-QKTLFIQCDVAD 65 (254)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHH---------------TTCEEEEEESCHHHHHHHHHHHTTTSCG-GGEEEEECCTTS
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHH---------------CCCEEEEEECCHHHHHHHHHHHHHhcCC-CcEEEEEeecCC
Confidence 556666676654 45555555421 4589999999999888777766543222 478889999876
Q ss_pred CC----------CCCCCeeEEEeccccccccCH
Q 036563 164 LC----------FEDSTMDGYTIAFGIRNVTHI 186 (288)
Q Consensus 164 ~~----------~~~~~~D~v~~~~~l~~~~~~ 186 (288)
.. ..-+..|+++.+.......+.
T Consensus 66 ~~~v~~~~~~~~~~~G~iDilVnnAg~~~~~~~ 98 (254)
T d2gdza1 66 QQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNW 98 (254)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCSSSH
T ss_pred HHHHHHHHHHHHHHcCCcCeecccccccccccc
Confidence 42 111468998887776655543
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=81.98 E-value=4.5 Score=28.74 Aligned_cols=95 Identities=7% Similarity=-0.022 Sum_probs=55.7
Q ss_pred eEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccccCC
Q 036563 86 KHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAEALC 165 (288)
Q Consensus 86 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 165 (288)
+|+=+|+ |..+..+++.+.. .+..++.+|.+++........... .++.++.+|..+..
T Consensus 5 HiII~G~--g~~g~~l~~~L~~---------------~~~~v~vId~d~~~~~~~~~~~~~-----~~~~vi~Gd~~d~~ 62 (153)
T d1id1a_ 5 HFIVCGH--SILAINTILQLNQ---------------RGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSS 62 (153)
T ss_dssp CEEEECC--SHHHHHHHHHHHH---------------TTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHH
T ss_pred EEEEECC--CHHHHHHHHHHHH---------------cCCCEEEEeccchhHHHHHHHhhc-----CCcEEEEccCcchH
Confidence 5665555 5677777776531 347899999988654433333222 36888999986642
Q ss_pred ----CCCCCeeEEEeccccccccCHH-HHHHHHHhhccCCcEEEEE
Q 036563 166 ----FEDSTMDGYTIAFGIRNVTHIE-KALAEAYRVLKRGGRFLCL 206 (288)
Q Consensus 166 ----~~~~~~D~v~~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i~ 206 (288)
..-+..|.+++... .|.. ..+....+.+.|...+++.
T Consensus 63 ~L~~a~i~~a~~vi~~~~----~d~~n~~~~~~~r~~~~~~~iia~ 104 (153)
T d1id1a_ 63 VLKKAGIDRCRAILALSD----NDADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp HHHHHTTTTCSEEEECSS----CHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred HHHHhccccCCEEEEccc----cHHHHHHHHHHHHHhCCCCceEEE
Confidence 12345788876432 1222 2333455666788777753
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=81.77 E-value=9.9 Score=29.58 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=53.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.++++|=-|++.| ++..+++.+.. .+++|+.+|.+++.++.+.+.+...+ .++.++.+|+.
T Consensus 7 ~GK~alITGas~G-IG~aia~~la~---------------~Ga~V~~~~r~~~~l~~~~~~~~~~g---~~~~~~~~Dv~ 67 (259)
T d2ae2a_ 7 EGCTALVTGGSRG-IGYGIVEELAS---------------LGASVYTCSRNQKELNDCLTQWRSKG---FKVEASVCDLS 67 (259)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHH---------------TTCEEEEEESCHHHHHHHHHHHHHTT---CEEEEEECCTT
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH---------------CCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEeeCC
Confidence 3667777776654 44455554421 35899999999999988887776654 46788889986
Q ss_pred cCC-----------CCCCCeeEEEecccc
Q 036563 163 ALC-----------FEDSTMDGYTIAFGI 180 (288)
Q Consensus 163 ~~~-----------~~~~~~D~v~~~~~l 180 (288)
+.. .-....|+++.+...
T Consensus 68 ~~~~v~~~~~~~~~~~~~~idilvnnAG~ 96 (259)
T d2ae2a_ 68 SRSERQELMNTVANHFHGKLNILVNNAGI 96 (259)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCCceEEEECCce
Confidence 531 112368999876654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.60 E-value=4.6 Score=31.45 Aligned_cols=81 Identities=15% Similarity=0.039 Sum_probs=54.7
Q ss_pred CCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcccc
Q 036563 83 PGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGDAE 162 (288)
Q Consensus 83 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 162 (288)
.|..+|=-|++.|. +..++..+.. .+.+|+.+|.+++.++...+.+...+ .++..+.+|+.
T Consensus 6 ~Gkv~lITGas~GI-G~~ia~~la~---------------~G~~V~l~~r~~~~l~~~~~~~~~~~---~~~~~~~~Dvs 66 (244)
T d1yb1a_ 6 TGEIVLITGAGHGI-GRLTAYEFAK---------------LKSKLVLWDINKHGLEETAAKCKGLG---AKVHTFVVDCS 66 (244)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHH---------------TTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTT
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHH---------------CCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCC
Confidence 35556666666654 3444444321 35899999999999988888877654 57888999987
Q ss_pred cCC----------CCCCCeeEEEecccccc
Q 036563 163 ALC----------FEDSTMDGYTIAFGIRN 182 (288)
Q Consensus 163 ~~~----------~~~~~~D~v~~~~~l~~ 182 (288)
+.. ...+..|+++.+.....
T Consensus 67 ~~~~v~~~~~~i~~~~g~idilinnag~~~ 96 (244)
T d1yb1a_ 67 NREDIYSSAKKVKAEIGDVSILVNNAGVVY 96 (244)
T ss_dssp CHHHHHHHHHHHHHHTCCCSEEEECCCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCceeEeeccccc
Confidence 642 12346899887766543
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=80.16 E-value=8.2 Score=27.80 Aligned_cols=108 Identities=16% Similarity=0.108 Sum_probs=56.4
Q ss_pred hcCCCCCCeEEEecCCccHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEE
Q 036563 78 KLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWV 157 (288)
Q Consensus 78 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~ 157 (288)
.+....+.+||=||. |..+..+++.+... ...+++.+.-+..-.+...+.+ + ....
T Consensus 18 ~~~~l~~~~ilviGa--G~~g~~v~~~L~~~--------------g~~~i~v~nRt~~ka~~l~~~~---~-----~~~~ 73 (159)
T d1gpja2 18 ELGSLHDKTVLVVGA--GEMGKTVAKSLVDR--------------GVRAVLVANRTYERAVELARDL---G-----GEAV 73 (159)
T ss_dssp HHSCCTTCEEEEESC--CHHHHHHHHHHHHH--------------CCSEEEEECSSHHHHHHHHHHH---T-----CEEC
T ss_pred HhCCcccCeEEEECC--CHHHHHHHHHHHhc--------------CCcEEEEEcCcHHHHHHHHHhh---h-----cccc
Confidence 334445779999987 55555555543210 1247888887755433333322 1 2222
Q ss_pred EcccccCCCCCCCeeEEEecccccc-ccCHHHHHHHHHhhccCCcEEEEEeccCCC
Q 036563 158 EGDAEALCFEDSTMDGYTIAFGIRN-VTHIEKALAEAYRVLKRGGRFLCLELSHVD 212 (288)
Q Consensus 158 ~~d~~~~~~~~~~~D~v~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 212 (288)
++.++...-..+|+|+....-.+ +-+ ...++...+.-+.+..++++|...|.
T Consensus 74 --~~~~~~~~l~~~Divi~atss~~~ii~-~~~i~~~~~~r~~~~~~~iiDlavPr 126 (159)
T d1gpja2 74 --RFDELVDHLARSDVVVSATAAPHPVIH-VDDVREALRKRDRRSPILIIDIANPR 126 (159)
T ss_dssp --CGGGHHHHHHTCSEEEECCSSSSCCBC-HHHHHHHHHHCSSCCCEEEEECCSSC
T ss_pred --cchhHHHHhccCCEEEEecCCCCcccc-HhhhHHHHHhcccCCCeEEEeecCCC
Confidence 22333211136999988665332 212 33445444444455667778887763
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=80.02 E-value=7.1 Score=28.28 Aligned_cols=111 Identities=13% Similarity=0.050 Sum_probs=57.7
Q ss_pred CCCCeEEEecCCc-cHHHHHHHHhhhhhhhhhhhcccccccCCCceEEEEeCChhHHHHHHHHhhhcCCCCCceEEEEcc
Q 036563 82 FPGMKHLDVAGGT-GDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYPDKSLLWVEGD 160 (288)
Q Consensus 82 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d 160 (288)
.++++||=+|||- +......+... +.+++.+.-+.+..+...+.+... ..+... +
T Consensus 16 ~~~k~vlIlGaGGaarai~~al~~~------------------g~~i~I~nRt~~ka~~l~~~~~~~----~~~~~~--~ 71 (170)
T d1nyta1 16 RPGLRILLIGAGGASRGVLLPLLSL------------------DCAVTITNRTVSRAEELAKLFAHT----GSIQAL--S 71 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT------------------TCEEEEECSSHHHHHHHHHHTGGG----SSEEEC--C
T ss_pred CCCCEEEEECCcHHHHHHHHHhccc------------------ceEEEeccchHHHHHHHHHHHhhc----cccccc--c
Confidence 4578999999975 33333333333 357899988887666655555443 133333 2
Q ss_pred cccCCCCCCCeeEEEeccccccccCHHHHHHHHHhhccCCcEEEEEeccCCChHHHHHHHH
Q 036563 161 AEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYD 221 (288)
Q Consensus 161 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 221 (288)
..+. ....+|+|+-.-.+....+.... -...++++..++=+-+.+...+++.....
T Consensus 72 ~~~~--~~~~~dliIN~Tp~G~~~~~~~~---~~~~~~~~~~v~D~vY~P~~T~ll~~A~~ 127 (170)
T d1nyta1 72 MDEL--EGHEFDLIINATSSGISGDIPAI---PSSLIHPGIYCYDMFYQKGKTPFLAWCEQ 127 (170)
T ss_dssp SGGG--TTCCCSEEEECCSCGGGTCCCCC---CGGGCCTTCEEEESCCCSSCCHHHHHHHH
T ss_pred cccc--cccccceeecccccCcccCCCCC---cHHHhccCcEEEEeecCCCCCHHHHHHHH
Confidence 2222 23468998866554332221110 12346666654422223335555555443
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