Citrus Sinensis ID: 036577
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | 2.2.26 [Sep-21-2011] | |||||||
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.819 | 0.639 | 0.376 | 2e-81 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.831 | 0.616 | 0.371 | 1e-78 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.831 | 0.607 | 0.372 | 4e-77 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.8 | 0.597 | 0.373 | 4e-77 | |
| Q9SH26 | 577 | Pentatricopeptide repeat- | no | no | 0.831 | 0.677 | 0.356 | 3e-76 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.8 | 0.612 | 0.358 | 9e-76 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.780 | 0.656 | 0.369 | 3e-75 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.829 | 0.619 | 0.342 | 4e-75 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.827 | 0.610 | 0.360 | 1e-74 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.8 | 0.596 | 0.356 | 3e-74 |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 303 bits (775), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 236/396 (59%), Gaps = 11/396 (2%)
Query: 71 RERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLF 130
RER +S I I ++A +F M+ RP P V F+ F +A+ K ++ VL
Sbjct: 57 RERLRSG----IVDIKKDDAIALFQEMIRSRPLPSLVD-FSRFFSAIARTKQFNLVLDFC 111
Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAE 190
K+L G+ ++YT NI+INCFC+ + + VLG++++ + PD TFN+LIKGL E
Sbjct: 112 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE 171
Query: 191 SRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCE 250
++ EA L ++ GC+P+V+TY++++NG+CR+G T +AL+L +M N +
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN------VK 225
Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCL 310
+ TY+TIID LC++G +D A LF +M+ + I +VVTYNSL+ G C A WN+ L
Sbjct: 226 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALL 285
Query: 311 LIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL 370
L +M+ + + PNV+TFNV++D K GK+ EA+ L MI G+ PN YNTLMDG+C+
Sbjct: 286 LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCM 345
Query: 371 TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVI 430
R++ A + M N+C D+ +++ LI GYC K ++ + ++ + +G+ + V
Sbjct: 346 QNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVT 405
Query: 431 YNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTY 466
Y+ L G + +++ A +LF EM GV D TY
Sbjct: 406 YSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTY 441
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 164/441 (37%), Positives = 236/441 (53%), Gaps = 50/441 (11%)
Query: 73 RFKSSGEGDITTITPN--------EAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYD 124
R SSG GD I N +A +F M+ RP P V FN L +AK K +D
Sbjct: 44 RAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVE-FNKLLSAIAKMKKFD 102
Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLI 184
V+SL +++ + LYTYNILINCFC+ ++S +LG++++ + P VT +SL+
Sbjct: 103 VVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162
Query: 185 KGLCAESRIM-----------------------------------EAAALFTKLKAFGCE 209
G C RI EA AL ++ GC+
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ 222
Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFV 269
PN++TY ++NGLC+ G T +ALNL +M E + V + TIID LCK V
Sbjct: 223 PNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK------IEADVVIFNTIIDSLCKYRHV 276
Query: 270 DKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVI 329
D A LF +M+ + I PNVVTY+SLI C W++A LL +M+++ + PN+VTFN +
Sbjct: 277 DDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 336
Query: 330 MDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRC 389
+D K GK EA +L D MI+ + P+ F YN+L++GFC+ R+++AK++F M S C
Sbjct: 337 IDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDC 396
Query: 390 MHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFK 449
DV +Y+ LI G+CK+K +E L+ EM +G+ D V Y TL GLF + A K
Sbjct: 397 FPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQK 456
Query: 450 LFDEMRRDGVAADTWTYRTFI 470
+F +M DGV D TY +
Sbjct: 457 VFKQMVSDGVPPDIMTYSILL 477
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (739), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 158/424 (37%), Positives = 239/424 (56%), Gaps = 33/424 (7%)
Query: 76 SSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNS 135
SSG + I ++A +F M+ RP P V FN LF +AK K Y+ VL+L K++ S
Sbjct: 61 SSG---LVGIKADDAVDLFRDMIQSRP-LPTVIDFNRLFSAIAKTKQYELVLALCKQMES 116
Query: 136 TGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIME 195
G+ +YT +I+INCFC+ ++S F +G+I++ + PD V FN+L+ GLC E R+ E
Sbjct: 117 KGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSE 176
Query: 196 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGE---------IG 246
A L ++ G +P +IT +TL+NGLC G A+ L + M + +
Sbjct: 177 ALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLN 236
Query: 247 VVCEP--------------------NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP 286
V+C+ + V Y+ IIDGLCK+G +D A LF +M+ +
Sbjct: 237 VMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKA 296
Query: 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 346
+++TYN+LI GFC A W++ LL +M+ + + PNVVTF+V++D K GK+ EA +LL
Sbjct: 297 DIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLL 356
Query: 347 DLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN 406
M+Q G+ PN YN+L+DGFC R+ A ++ M S C D+ +++ILINGYCK
Sbjct: 357 KEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKA 416
Query: 407 KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTY 466
I+ L L+ EM +G+ + V YNTL G + ++E A KLF EM V D +Y
Sbjct: 417 NRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSY 476
Query: 467 RTFI 470
+ +
Sbjct: 477 KILL 480
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 288 bits (738), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 156/418 (37%), Positives = 233/418 (55%), Gaps = 42/418 (10%)
Query: 88 NEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
++A +F M+ RP P V FN L +AK +D V+SL +R+ + + DLY+YNI
Sbjct: 62 DDAVDLFGEMVQSRPLPSIVE-FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120
Query: 148 LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAAL-------- 199
LINCFC+ ++ VLG++++ + PD VT +SL+ G C RI EA AL
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180
Query: 200 ---------------------------FTKLKAFGCEPNVITYSTLINGLCRTGHTIVAL 232
++ A GC+P++ TY T++NGLC+ G +AL
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240
Query: 233 NLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN 292
+L ++M G E + V YTTIID LC V+ A LF +M ++ I PNVVTYN
Sbjct: 241 SLLKKMEKGK------IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 294
Query: 293 SLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI 352
SLI C W++A LL +M+++ + PNVVTF+ ++D K GK+ EA +L D MI+
Sbjct: 295 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354
Query: 353 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGA 412
+ P+ F Y++L++GFC+ R++ AK +F M S C +V +Y+ LI G+CK K +E
Sbjct: 355 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEG 414
Query: 413 LSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRTFI 470
+ L+ EM +G+ + V YNTL GLF+ + A K+F +M DGV D TY +
Sbjct: 415 MELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 472
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 157/441 (35%), Positives = 237/441 (53%), Gaps = 50/441 (11%)
Query: 73 RFKSSGEGDITTITPN--------EAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYD 124
R SSG GD I N +A +F M+ RP P + FN L +AK K +D
Sbjct: 44 RAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRP-LPSIFEFNKLLSAIAKMKKFD 102
Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLI 184
V+SL +++ G+ +LYTYNILINCFC+ ++S +LG++++ + P VT +SL+
Sbjct: 103 LVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162
Query: 185 KGLCAESRI-----------------------------------MEAAALFTKLKAFGCE 209
G C RI EA AL ++ GC+
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ 222
Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFV 269
PN++TY ++NGLC+ G +A NL +M E N V Y+T+ID LCK
Sbjct: 223 PNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK------IEANVVIYSTVIDSLCKYRHE 276
Query: 270 DKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVI 329
D A LF +M+++ + PNV+TY+SLI C W++A LL +M+++ + PNVVTFN +
Sbjct: 277 DDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNAL 336
Query: 330 MDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRC 389
+D K GK+ EA +L D MI+ + P+ F Y++L++GFC+ R++ AK +F M S C
Sbjct: 337 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 396
Query: 390 MHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFK 449
+V +Y+ LING+CK K I+ + L+ EM +G+ + V Y TL G F+ + A
Sbjct: 397 FPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 456
Query: 450 LFDEMRRDGVAADTWTYRTFI 470
+F +M DGV + TY T +
Sbjct: 457 VFKQMVSDGVHPNIMTYNTLL 477
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (727), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 150/418 (35%), Positives = 231/418 (55%), Gaps = 42/418 (10%)
Query: 88 NEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
+EA +F M+ RP P V F+ L +AK K +D V+S +++ G+ +LYTYNI
Sbjct: 47 DEAVDLFGEMVKSRPFPSIVE-FSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105
Query: 148 LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFG 207
+INC C+ ++S +LG++++ + P VT NSL+ G C +RI EA AL ++ G
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165
Query: 208 -----------------------------------CEPNVITYSTLINGLCRTGHTIVAL 232
C+P+++TY +INGLC+ G +AL
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225
Query: 233 NLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN 292
NL +M G E + V Y+T+ID LCK VD A LF +M ++ I P+V TY+
Sbjct: 226 NLLNKMEKGK------IEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYS 279
Query: 293 SLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI 352
SLI C W++A LL +M+++ + PNVVTFN ++D K GK+ EA +L D MIQ
Sbjct: 280 SLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR 339
Query: 353 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGA 412
+ PN YN+L++GFC+ R++ A+++F M S C+ DV +Y+ LING+CK K++
Sbjct: 340 SIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDG 399
Query: 413 LSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRTFI 470
+ L+ +M +G+ + V Y TL G F+ + A +F +M DGV + TY T +
Sbjct: 400 MELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLL 457
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 283 bits (723), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 151/409 (36%), Positives = 224/409 (54%), Gaps = 42/409 (10%)
Query: 97 MLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
M+ RP P + FN L +AK K +D V+SL +++ G+ +LYTYNILINCFC+
Sbjct: 1 MVKSRP-LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRS 59
Query: 157 RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIM---------------------- 194
++S +LG++++ + P VT +SL+ G C RI
Sbjct: 60 QISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFT 119
Query: 195 -------------EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
EA AL ++ GC+PN++TY ++NGLC+ G +A NL +M
Sbjct: 120 TLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAA 179
Query: 242 NGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYA 301
E + V + TIID LCK VD A LF +M+ + I PNVVTY+SLI C
Sbjct: 180 K------IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSY 233
Query: 302 NDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVY 361
W++A LL +M+++ + PN+VTFN ++D K GK EA +L D MI+ + P+ F Y
Sbjct: 234 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTY 293
Query: 362 NTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLS 421
N+L++GFC+ R+++AK++F M S C D+ +Y+ LI G+CK+K +E L+ EM
Sbjct: 294 NSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSH 353
Query: 422 KGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRTFI 470
+G+ D V Y TL GLF + A K+F +M DGV D TY +
Sbjct: 354 RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILL 402
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 282 bits (722), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 149/435 (34%), Positives = 242/435 (55%), Gaps = 45/435 (10%)
Query: 71 RERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLF 130
RE+ +G ++ + ++A +F M+ RP P + F+ L +AK +D V+SL
Sbjct: 49 REKLSRNG---LSELKLDDAVALFGEMVKSRPFPSIIE-FSKLLSAIAKMNKFDVVISLG 104
Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR-------------------- 170
+++ + G+ + YTY+ILINCFC+ ++ VLG++++
Sbjct: 105 EQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHS 164
Query: 171 ---------------SCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITY 215
+ + P+ VTFN+LI GL ++ EA AL ++ A GC+P+++TY
Sbjct: 165 KRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTY 224
Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKEL 275
++NGLC+ G T +A NL +M G EP + Y TIIDGLCK +D A L
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGK------LEPGVLIYNTIIDGLCKYKHMDDALNL 278
Query: 276 FLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK 335
F +M+ + I PNVVTY+SLI C W++A LL +M+++ + P+V TF+ ++D K
Sbjct: 279 FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338
Query: 336 NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFS 395
GK+ EA +L D M++ + P+ Y++L++GFC+ R++ AK++F M S C DV +
Sbjct: 339 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVT 398
Query: 396 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMR 455
Y+ LI G+CK K +E + ++ EM +G+ + V YN L GLF+ + A ++F EM
Sbjct: 399 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV 458
Query: 456 RDGVAADTWTYRTFI 470
DGV + TY T +
Sbjct: 459 SDGVPPNIMTYNTLL 473
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (717), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 157/435 (36%), Positives = 241/435 (55%), Gaps = 46/435 (10%)
Query: 71 RERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLF 130
RER +S + I ++A +F M++ RP P V F+ LF +AK K YD VL+L
Sbjct: 57 RERLRSG----LVDIKADDAIDLFRDMIHSRP-LPTVIDFSRLFSAIAKTKQYDLVLALC 111
Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAE 190
K++ G+ +LYT +I+INCFC+ ++ F +G+I++ + P+ +TF++LI GLC E
Sbjct: 112 KQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLE 171
Query: 191 SRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCE 250
R+ EA L ++ G +P++IT +TL+NGLC +G A+ L ++M E G C+
Sbjct: 172 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMV----EYG--CQ 225
Query: 251 PNTVT-----------------------------------YTTIIDGLCKEGFVDKAKEL 275
PN VT Y+ IIDGLCK G +D A L
Sbjct: 226 PNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNL 285
Query: 276 FLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK 335
F +M+ + I N++TYN LI GFC A W++ LL +M+ + + PNVVTF+V++D K
Sbjct: 286 FNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 345
Query: 336 NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFS 395
GK+ EA L MI G+ P+ Y +L+DGFC +++A ++ M S C ++ +
Sbjct: 346 EGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRT 405
Query: 396 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMR 455
++ILINGYCK I+ L L+ +M +G+ D V YNTL G E+ ++ A +LF EM
Sbjct: 406 FNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMV 465
Query: 456 RDGVAADTWTYRTFI 470
V + TY+ +
Sbjct: 466 SRKVPPNIVTYKILL 480
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (713), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 149/418 (35%), Positives = 231/418 (55%), Gaps = 42/418 (10%)
Query: 88 NEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
++A +F M+ RP P V F+ L +AK +D V+SL +++ + G+ +LYTY+I
Sbjct: 63 DDAVNLFGDMVKSRPFPSIVE-FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121
Query: 148 LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIM------------- 194
LINCFC+ ++S VL ++++ + PD VT NSL+ G C +RI
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181
Query: 195 ----------------------EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVAL 232
EA AL ++ GC+P+++TY ++NGLC+ G +AL
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241
Query: 233 NLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN 292
+L ++M G EP V Y TIID LC V+ A LF +M ++ I PNVVTYN
Sbjct: 242 SLLKKMEQGK------IEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 295
Query: 293 SLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI 352
SLI C W++A LL +M+++ + PNVVTF+ ++D K GK+ EA +L D MI+
Sbjct: 296 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 355
Query: 353 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGA 412
+ P+ F Y++L++GFC+ R++ AK +F M S C +V +Y+ LI G+CK K ++
Sbjct: 356 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEG 415
Query: 413 LSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRTFI 470
+ L+ EM +G+ + V Y TL G F+ + + A +F +M DGV D TY +
Sbjct: 416 MELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILL 473
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | ||||||
| 359479583 | 627 | PREDICTED: pentatricopeptide repeat-cont | 0.921 | 0.690 | 0.495 | 1e-120 | |
| 449529622 | 618 | PREDICTED: pentatricopeptide repeat-cont | 0.919 | 0.699 | 0.461 | 1e-107 | |
| 449520325 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.819 | 0.636 | 0.481 | 1e-105 | |
| 449520323 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.925 | 0.719 | 0.448 | 1e-104 | |
| 255559961 | 628 | pentatricopeptide repeat-containing prot | 0.823 | 0.616 | 0.472 | 1e-101 | |
| 449462477 | 597 | PREDICTED: pentatricopeptide repeat-cont | 0.902 | 0.710 | 0.441 | 1e-99 | |
| 449462479 | 580 | PREDICTED: pentatricopeptide repeat-cont | 0.765 | 0.620 | 0.445 | 3e-91 | |
| 225452994 | 588 | PREDICTED: putative pentatricopeptide re | 0.802 | 0.641 | 0.440 | 6e-90 | |
| 147768816 | 653 | hypothetical protein VITISV_031897 [Viti | 0.802 | 0.577 | 0.440 | 6e-90 | |
| 147771991 | 586 | hypothetical protein VITISV_022964 [Viti | 0.795 | 0.638 | 0.443 | 5e-87 |
| >gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Vitis vinifera] gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/450 (49%), Positives = 292/450 (64%), Gaps = 17/450 (3%)
Query: 21 RCNFSSSFPHTGKPTSSILENEPSYPNTTAKLKESLRLTVKDRASLEKFLRERFKSSGEG 80
RC SS F H +P S P + K+++ DR LE FL+ KS
Sbjct: 23 RCKLSSLFEHPHRPIS---------PGPISLTKDTVS-NAPDRGQLENFLKSNCKSG--- 69
Query: 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFP 140
I +EAF +F+++++M+P+PP +SSFN L G +AK K Y V+SL+KR++ GL P
Sbjct: 70 ---HIKRSEAFSVFNHLIDMQPTPP-ISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAP 125
Query: 141 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALF 200
D T NILINC+C + +V G VLG +LR +P+ VTF SL+KGLC SRI EA L
Sbjct: 126 DFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLL 185
Query: 201 TKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTII 260
K+ G PNV+TY TL+NGLC TG+T++A+ L EEM NGNG GV +PN V Y TII
Sbjct: 186 RKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTII 245
Query: 261 DGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ 320
D LCK+G +DK KELFL+MK I+P+VV Y+S+IHG C+ W AK L EM+D+GV
Sbjct: 246 DSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVH 305
Query: 321 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKEL 380
PNVVTFNV++D LCK GKM+EA+ LL LMIQ G P+ F YNTL+DGFCL GR++ A++L
Sbjct: 306 PNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDL 365
Query: 381 FVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE 440
FVSMES D SY++LINGYCK+ + A LY EM+ K I P V+ YNTL GLF
Sbjct: 366 FVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFR 425
Query: 441 IHQVERAFKLFDEMRRDGVAADTWTYRTFI 470
+V A+ LF EM+ + ++ TY +
Sbjct: 426 EGKVRDAWNLFGEMKVHDLTPESCTYNILL 455
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/446 (46%), Positives = 281/446 (63%), Gaps = 14/446 (3%)
Query: 25 SSSFPHTGKPTSSILENEPSYPNTTAKLKESLRLTVKDRASLEKFLRERFKSSGEGDITT 84
SS+ P + TSS P P R + L FLR + G+IT
Sbjct: 23 SSTIPSSIPQTSSTHHPNPILPAAFN------REEISFHHPLSLFLR----NCKTGNITA 72
Query: 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 144
I +AF FD M+ P PP +SSFN L G LAK HY + SL+ + GL PDL+T
Sbjct: 73 I---QAFHFFDLMMRSHPIPP-ISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFT 128
Query: 145 YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLK 204
+IL NC C + RVS + ILR + P+ VT+ +LIKGLC E RI EA LF +++
Sbjct: 129 LSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQ 188
Query: 205 AFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC 264
GC PN +TY TLI GLC+TG+ +AL L +EM N + GV C+P +TY+ IIDGLC
Sbjct: 189 KLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLC 248
Query: 265 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVV 324
K G D+AKELF +MK + + P+V++Y++LIHGFC A W+++K L EM+DQGVQP++V
Sbjct: 249 KVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMV 308
Query: 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSM 384
TF+V++D LCK GK+ EA +LL++MIQ G+ PN YN+L+DGFC+ G +N A+ELF+SM
Sbjct: 309 TFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSM 368
Query: 385 ESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQV 444
S D SY+ LINGYCK +++ A++LY+EML G P+V Y TL GLF+ +V
Sbjct: 369 PSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKV 428
Query: 445 ERAFKLFDEMRRDGVAADTWTYRTFI 470
A KLF M+ GV+A++ Y F+
Sbjct: 429 GDAKKLFGVMKTYGVSANSQIYGIFL 454
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/386 (48%), Positives = 262/386 (67%), Gaps = 1/386 (0%)
Query: 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 144
+T A F M+ P+P +SSFN L LAK KHY V SL+ ++ +GL D T
Sbjct: 48 VTATHALHFFHLMMRSTPTPS-LSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCT 106
Query: 145 YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLK 204
NIL+NC C + R+ GF ILR ++P+ VT+N+LIKGLC E RI EA LF +++
Sbjct: 107 LNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ 166
Query: 205 AFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC 264
GC P+V+TY TLI GLC TG+ +AL L +EM N + C+PN +TY I+DGLC
Sbjct: 167 KLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLC 226
Query: 265 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVV 324
K G D+AK+LF +MK + + P++++YNSLIHGFC A W E+K LL EM+DQG+QP++V
Sbjct: 227 KVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMV 286
Query: 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSM 384
TFNV++D LCK GK+ EA +LL +MI+ G+ P+ YN+L++GFC+ G +N A+ELFVSM
Sbjct: 287 TFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM 346
Query: 385 ESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQV 444
S C DV SY++LINGY K ++E A+ LY+EML G +P+V+ Y++L G+F +V
Sbjct: 347 PSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKV 406
Query: 445 ERAFKLFDEMRRDGVAADTWTYRTFI 470
+ A KLF M+ G+A +++TY F+
Sbjct: 407 DDAKKLFSVMKAHGIAENSYTYGIFL 432
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/441 (44%), Positives = 277/441 (62%), Gaps = 6/441 (1%)
Query: 35 TSSILENEPSYPNT-----TAKLKESLRLTVKDRASLEKFLRERFKSSGEGDITTITPNE 89
+SS+ + P+ P++ +A +SL ++ ++ + F ++ IT +
Sbjct: 20 SSSLFTHSPTIPSSNPHFSSAVHHKSLNVSPQNFNTPISFQQQLSMFLHNCKTGNITATQ 79
Query: 90 AFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
AF F M+ P+PP +SSF L LAK KHY V L+ ++ +G+ PD T NIL+
Sbjct: 80 AFQFFHLMMYSNPTPP-LSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILL 138
Query: 150 NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCE 209
NC C + RV G V+ ILR + PD VT+ +LIKGLC E RI +AA LFT+++ GC
Sbjct: 139 NCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCT 198
Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFV 269
PN ITY TL+ GLCRTG+ +AL L +EM N + G+ +P ++Y+ IID LCK+
Sbjct: 199 PNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRE 258
Query: 270 DKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVI 329
D+A++LF +MK + + P V++Y SLIHGFC W EAK L EM++QGVQPNVVTFNV+
Sbjct: 259 DEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVL 318
Query: 330 MDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRC 389
+D LCK GK+ EA LL++MIQ G+ PN YN+L++GFCL G +N A+ELFVSM S C
Sbjct: 319 IDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGC 378
Query: 390 MHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFK 449
DV Y++LINGYCK ++E A+ LY+ ML G +PDV Y L GLF+ +V A K
Sbjct: 379 EPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKK 438
Query: 450 LFDEMRRDGVAADTWTYRTFI 470
LF M+ G+ D + Y F+
Sbjct: 439 LFGVMKVYGIPGDLYIYGIFL 459
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/404 (47%), Positives = 264/404 (65%), Gaps = 17/404 (4%)
Query: 66 LEKFLRERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDT 125
LE+FL KS GD T +EA F+ M++M+ +P +S FN LFG LAK K Y
Sbjct: 73 LEQFLEINCKS---GDFTL---HEALHFFNQMIHMQTTPA-LSRFNNLFGALAKKKQYLH 125
Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185
V+S+ R+NS GL + + NIL+NC C + RV GFVV G ILR + P+ TF +L+K
Sbjct: 126 VISMCGRMNSIGLLKNFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVK 185
Query: 186 GLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEI 245
GLC E +I EA +F + F C P+ IT LI+GLCRTG+T AL L E M NGN +
Sbjct: 186 GLCLEGKIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDF 245
Query: 246 GVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWN 305
G+ C+P V+Y+ IID LCK+G V++AKE F++MK++ I PNVVTY SL+HG C A++W
Sbjct: 246 GINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWE 305
Query: 306 EAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLM 365
EAK L IEM+D G+ P+VVTF+V++ LCK GK+ EAS L DLM+Q V P+ YN L+
Sbjct: 306 EAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILI 365
Query: 366 DGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK 425
+G+CL G V+ K++F+SM + RC HD SYSIL+ YCK+ E+ GA+ LY EM+ +GI+
Sbjct: 366 EGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQ 425
Query: 426 PDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRTF 469
P V+ Y+ +V A KLF E++ + D+ +Y +
Sbjct: 426 PTVITYS----------KVGDARKLFGEIQFQDMVLDSISYSIY 459
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 196/444 (44%), Positives = 277/444 (62%), Gaps = 20/444 (4%)
Query: 35 TSSILENEPSYPNT-----TAKLKESLRLTVKD---RASLEKFLRERFKSSGEGDITTIT 86
+SS+ + P+ P++ +A +SL ++ ++ S ++ L + G+IT I
Sbjct: 20 SSSLFTHSPTIPSSNPHFSSAVHHKSLNVSPQNFNTPISFQQQLSMFLHNCKTGNITAI- 78
Query: 87 PNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYN 146
+AF F M+ P+PP +SSF L LAK KHY V L+ ++ +G+ PD T N
Sbjct: 79 --QAFQFFHLMMYSNPTPP-LSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLN 135
Query: 147 ILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAF 206
IL+NC C + RV G V+ ILR + PD VT+ +LIKGLC E RI +AA LFT+++
Sbjct: 136 ILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKL 195
Query: 207 GCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKE 266
GC PN ITY TL+ GLCRTG+ +AL L +EM N + G+ +P ++Y+ IID LCK+
Sbjct: 196 GCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKD 255
Query: 267 GFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTF 326
D+A++LF +MK + + P V++Y SL+ W EAK L EM++QGVQPNVVTF
Sbjct: 256 RREDEARDLFEEMKVQGMTPTVISYTSLM--------WEEAKRLFNEMVNQGVQPNVVTF 307
Query: 327 NVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386
NV++D LCK GK+ EA LL++MIQ G+ PN YN+L++GFCL G +N A+ELFVSM S
Sbjct: 308 NVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPS 367
Query: 387 NRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVER 446
C DV Y++LINGYCK ++E A+ LY+ ML G +PDV Y L GLF+ +V
Sbjct: 368 KGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGD 427
Query: 447 AFKLFDEMRRDGVAADTWTYRTFI 470
A KLF M+ G+ D + Y F+
Sbjct: 428 AKKLFGVMKVYGIPGDLYIYGIFL 451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 172/386 (44%), Positives = 243/386 (62%), Gaps = 26/386 (6%)
Query: 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 144
+T A F M+ P+P +SSFN L LAK KHY V SL+ ++ +GL D T
Sbjct: 48 VTATHALHFFHLMMRSTPTPS-LSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCT 106
Query: 145 YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLK 204
NIL+NC C + R+ GF ILR ++P+ VT+N+LIKGLC E RI EA LF +++
Sbjct: 107 LNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ 166
Query: 205 AFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC 264
GC P+V+TY TLI GLC TG+ +AL L +EM N + C+PN +TY I+DGLC
Sbjct: 167 KLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLC 226
Query: 265 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVV 324
K G D+AK+LF +MK + + PN EM+DQG+QP++V
Sbjct: 227 KVGREDEAKQLFEEMKTQGMIPN-------------------------EMLDQGLQPDMV 261
Query: 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSM 384
TFNV++D LCK GK+ EA +LL +MI+ G+ P+ YN+L++GFC+ G +N A+ELFVSM
Sbjct: 262 TFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM 321
Query: 385 ESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQV 444
S C DV SY++LINGY K ++E A+ LY+EML G +P+V+ Y++L G+F +V
Sbjct: 322 PSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKV 381
Query: 445 ERAFKLFDEMRRDGVAADTWTYRTFI 470
+ A KLF M+ G+A +++TY F+
Sbjct: 382 DDAKKLFSVMKAHGIAENSYTYGIFL 407
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 169/384 (44%), Positives = 236/384 (61%), Gaps = 7/384 (1%)
Query: 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTY 145
T +EA F+ ML+ +P PP FN L +AK KH+ T+LSL ++++S G+ PD+YT
Sbjct: 50 TLDEALSTFNRMLHKQP-PPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108
Query: 146 NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKA 205
I+IN C + RV F L +IL+ PDA TF +LI+GLC E +I EA LF K+
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168
Query: 206 FGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK 265
G +PNV+TY TLINGLC+ G+T A+ L M GN C+PN V ++T+ID LCK
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPNVVVFSTLIDSLCK 222
Query: 266 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVT 325
+ V +A +F +M + I+PN+VTYNSLIHG C +W L+ EM+D + P+V T
Sbjct: 223 DRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 282
Query: 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385
N ++D LCK G + EA ++D+MI GV PN YN LMDG CL V+ A ++F +M
Sbjct: 283 LNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMV 342
Query: 386 SNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVE 445
C+ +V SY+ LINGYCK + ++ A+ L+ EM + + P+ V YNTL GL + +++
Sbjct: 343 HKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQ 402
Query: 446 RAFKLFDEMRRDGVAADTWTYRTF 469
A LF EM G D TYRT
Sbjct: 403 DAISLFHEMVARGQIPDLVTYRTL 426
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 169/384 (44%), Positives = 236/384 (61%), Gaps = 7/384 (1%)
Query: 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTY 145
T +EA F+ ML+ +P PP FN L +AK KH+ T+LSL ++++S G+ PD+YT
Sbjct: 50 TLDEALSTFNRMLHKQP-PPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108
Query: 146 NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKA 205
I+IN C + RV F L +IL+ PDA TF +LI+GLC E +I EA LF K+
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168
Query: 206 FGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK 265
G +PNV+TY TLINGLC+ G+T A+ L M GN C+PN V ++T+ID LCK
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPNVVVFSTLIDSLCK 222
Query: 266 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVT 325
+ V +A +F +M + I+PN+VTYNSLIHG C +W L+ EM+D + P+V T
Sbjct: 223 DRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 282
Query: 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385
N ++D LCK G + EA ++D+MI GV PN YN LMDG CL V+ A ++F +M
Sbjct: 283 LNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMV 342
Query: 386 SNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVE 445
C+ +V SY+ LINGYCK + ++ A+ L+ EM + + P+ V YNTL GL + +++
Sbjct: 343 HKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQ 402
Query: 446 RAFKLFDEMRRDGVAADTWTYRTF 469
A LF EM G D TYRT
Sbjct: 403 DAISLFHEMVARGQIPDLVTYRTL 426
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 169/381 (44%), Positives = 233/381 (61%), Gaps = 7/381 (1%)
Query: 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTY 145
T ++A F+ ML+M P PP ++ F L + K KHY TVLSL +++S G+ P++YT
Sbjct: 48 TLDDALSSFNRMLHMHP-PPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTL 106
Query: 146 NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKA 205
NILIN FC + R+ F VL +IL+ P+ TFN+LI+GLC E +I E LF K+
Sbjct: 107 NILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIG 166
Query: 206 FGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK 265
G +PNV+TY TLINGLC+ G T A+ L M GN C+P+ V YT+IID LCK
Sbjct: 167 EGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGN------CQPDVVVYTSIIDSLCK 220
Query: 266 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVT 325
+ V +A LF +M + I+P++ TYNSLIH C +W LL EM++ + PNVV
Sbjct: 221 DRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVI 280
Query: 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385
F+ ++D LCK GK+ EA ++D+MI+ GV PN YN LMDG CL ++ A ++F +M
Sbjct: 281 FSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMV 340
Query: 386 SNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVE 445
DV SYS LINGYCK + IE A+ L+ EM K + P+ V Y+TL GL + +++
Sbjct: 341 CKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQ 400
Query: 446 RAFKLFDEMRRDGVAADTWTY 466
A LF EM G D +Y
Sbjct: 401 DAIALFHEMVTRGQIPDFVSY 421
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | ||||||
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.748 | 0.555 | 0.385 | 1.7e-68 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.757 | 0.579 | 0.367 | 3.5e-68 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.772 | 0.577 | 0.383 | 4.4e-68 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.748 | 0.558 | 0.374 | 1.5e-67 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.757 | 0.565 | 0.359 | 1.3e-66 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.757 | 0.616 | 0.361 | 2.2e-66 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.827 | 0.610 | 0.35 | 7.4e-66 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.931 | 0.799 | 0.334 | 1.4e-64 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.819 | 0.597 | 0.349 | 3.7e-64 | |
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.748 | 0.559 | 0.357 | 4.7e-64 |
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 138/358 (38%), Positives = 210/358 (58%)
Query: 109 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 168
++NIL C + L+L ++ G P + T + L+N +C R+S ++ ++
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 169 LRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHT 228
+ + PD +TF +LI GL ++ EA AL ++ GC+PN++TY ++NGLC+ G T
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241
Query: 229 IVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 288
+ALNL +M E + E + V + TIID LCK VD A LF +M+ + I PNV
Sbjct: 242 DLALNLLNKM-----EAAKI-EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 295
Query: 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDL 348
VTY+SLI C W++A LL +M+++ + PN+VTFN ++D K GK EA +L D
Sbjct: 296 VTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDD 355
Query: 349 MIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKE 408
MI+ + P+ F YN+L++GFC+ R+++AK++F M S C DV +Y+ LI G+CK+K
Sbjct: 356 MIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 415
Query: 409 IEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTY 466
+E L+ EM +G+ D V Y TL GLF + A K+F +M DGV D TY
Sbjct: 416 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTY 473
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 133/362 (36%), Positives = 211/362 (58%)
Query: 109 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 168
++NI+ CL + L++ ++ G P + T N L+N FC R+S ++ ++
Sbjct: 102 TYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161
Query: 169 LRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHT 228
+ + PD VTF +L+ GL ++ EA AL ++ GC+P+++TY +INGLC+ G
Sbjct: 162 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEP 221
Query: 229 IVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 288
+ALNL +M G E + V Y+T+ID LCK VD A LF +M ++ I P+V
Sbjct: 222 DLALNLLNKMEKGK------IEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDV 275
Query: 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDL 348
TY+SLI C W++A LL +M+++ + PNVVTFN ++D K GK+ EA +L D
Sbjct: 276 FTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDE 335
Query: 349 MIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKE 408
MIQ + PN YN+L++GFC+ R++ A+++F M S C+ DV +Y+ LING+CK K+
Sbjct: 336 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKK 395
Query: 409 IEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRT 468
+ + L+ +M +G+ + V Y TL G F+ + A +F +M DGV + TY T
Sbjct: 396 VVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNT 455
Query: 469 FI 470
+
Sbjct: 456 LL 457
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 142/370 (38%), Positives = 218/370 (58%)
Query: 97 MLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
M N+R S + S+NIL C + L++ ++ G PD+ T + L+N +C
Sbjct: 106 MQNLRISYD-LYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGK 164
Query: 157 RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYS 216
R+S ++ ++ + P+ VTFN+LI GL ++ EA AL ++ A GC+P++ TY
Sbjct: 165 RISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYG 224
Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELF 276
T++NGLC+ G +AL+L ++M G E + V YTTIID LC V+ A LF
Sbjct: 225 TVVNGLCKRGDIDLALSLLKKMEKGK------IEADVVIYTTIIDALCNYKNVNDALNLF 278
Query: 277 LKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN 336
+M ++ I PNVVTYNSLI C W++A LL +M+++ + PNVVTF+ ++D K
Sbjct: 279 TEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 338
Query: 337 GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSY 396
GK+ EA +L D MI+ + P+ F Y++L++GFC+ R++ AK +F M S C +V +Y
Sbjct: 339 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 398
Query: 397 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456
+ LI G+CK K +E + L+ EM +G+ + V YNTL GLF+ + A K+F +M
Sbjct: 399 NTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVS 458
Query: 457 DGVAADTWTY 466
DGV D TY
Sbjct: 459 DGVPPDIITY 468
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 134/358 (37%), Positives = 210/358 (58%)
Query: 109 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 168
+++IL C + L++ ++ G PD+ T N L+N FC R+S ++G++
Sbjct: 118 TYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQM 177
Query: 169 LRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHT 228
+ + PD+ TFN+LI GL +R EA AL ++ GC+P+++TY ++NGLC+ G
Sbjct: 178 VEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDI 237
Query: 229 IVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 288
+AL+L ++M G EP V Y TIID LC V+ A LF +M ++ I PNV
Sbjct: 238 DLALSLLKKMEQGK------IEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 291
Query: 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDL 348
VTYNSLI C W++A LL +M+++ + PNVVTF+ ++D K GK+ EA +L D
Sbjct: 292 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 351
Query: 349 MIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKE 408
MI+ + P+ F Y++L++GFC+ R++ AK +F M S C +V +Y+ LI G+CK K
Sbjct: 352 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 411
Query: 409 IEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTY 466
++ + L+ EM +G+ + V Y TL G F+ + + A +F +M DGV D TY
Sbjct: 412 VDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTY 469
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 130/362 (35%), Positives = 213/362 (58%)
Query: 109 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 168
+++IL C + L++ ++ G P++ T + L+N +C R+S ++ ++
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177
Query: 169 LRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHT 228
+ + P+ VTFN+LI GL ++ EA AL ++ A GC+P+++TY ++NGLC+ G T
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237
Query: 229 IVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 288
+A NL +M G EP + Y TIIDGLCK +D A LF +M+ + I PNV
Sbjct: 238 DLAFNLLNKMEQGK------LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNV 291
Query: 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDL 348
VTY+SLI C W++A LL +M+++ + P+V TF+ ++D K GK+ EA +L D
Sbjct: 292 VTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDE 351
Query: 349 MIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKE 408
M++ + P+ Y++L++GFC+ R++ AK++F M S C DV +Y+ LI G+CK K
Sbjct: 352 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKR 411
Query: 409 IEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRT 468
+E + ++ EM +G+ + V YN L GLF+ + A ++F EM DGV + TY T
Sbjct: 412 VEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 471
Query: 469 FI 470
+
Sbjct: 472 LL 473
|
|
| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 131/362 (36%), Positives = 210/362 (58%)
Query: 109 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 168
++NIL C + L+L ++ G P + T + L+N +C R+S ++ ++
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 169 LRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHT 228
+ + PD +TF +LI GL ++ EA AL ++ GC+PN++TY ++NGLC+ G
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDI 241
Query: 229 IVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 288
+A NL +M E + E N V Y+T+ID LCK D A LF +M+++ + PNV
Sbjct: 242 DLAFNLLNKM-----EAAKI-EANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNV 295
Query: 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDL 348
+TY+SLI C W++A LL +M+++ + PNVVTFN ++D K GK+ EA +L D
Sbjct: 296 ITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDE 355
Query: 349 MIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKE 408
MI+ + P+ F Y++L++GFC+ R++ AK +F M S C +V +Y+ LING+CK K
Sbjct: 356 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKR 415
Query: 409 IEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRT 468
I+ + L+ EM +G+ + V Y TL G F+ + A +F +M DGV + TY T
Sbjct: 416 IDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNT 475
Query: 469 FI 470
+
Sbjct: 476 LL 477
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| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 140/400 (35%), Positives = 229/400 (57%)
Query: 71 RERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLF 130
RER +S + I ++A +F M++ RP P V F+ LF +AK K YD VL+L
Sbjct: 57 RERLRSG----LVDIKADDAIDLFRDMIHSRPLPT-VIDFSRLFSAIAKTKQYDLVLALC 111
Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAE 190
K++ G+ +LYT +I+INCFC+ ++ F +G+I++ + P+ +TF++LI GLC E
Sbjct: 112 KQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLE 171
Query: 191 SRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCE 250
R+ EA L ++ G +P++IT +TL+NGLC +G A+ L ++M E G C+
Sbjct: 172 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMV----EYG--CQ 225
Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCL 310
PN VTY +++ +CK G A EL KM++ NI + V Y+ +I G C + A L
Sbjct: 226 PNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNL 285
Query: 311 LIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL 370
EM +G+ N++T+N+++ C G+ D+ ++LL MI+ + PN ++ L+D F
Sbjct: 286 FNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 345
Query: 371 TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVI 430
G++ A+EL M D +Y+ LI+G+CK ++ A + M+SKG P++
Sbjct: 346 EGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRT 405
Query: 431 YNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRTFI 470
+N L G + ++++ +LF +M GV ADT TY T I
Sbjct: 406 FNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 445
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| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 153/458 (33%), Positives = 251/458 (54%)
Query: 14 SISVSALRCNFSSSFPHTGKPTSSILENEPSYPNTTAKLKESLRLTVKDRASLEKF-LRE 72
SI+++A R + GKP ++ + PS+ + + S R V+ +S+ LRE
Sbjct: 4 SIAMTAKRF-LHRNLLENGKPRTA---SSPSFSHCS-----SCRCWVRASSSVSGGDLRE 54
Query: 73 RFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKR 132
R + DI N+A +F M+ RP P V FN L + K K YD V+SL K+
Sbjct: 55 RLSKTRLRDIKL---NDAIDLFSDMVKSRPFPSIVD-FNRLLSAIVKLKKYDVVISLGKK 110
Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESR 192
+ G+ DLYT+NI+INCFC +VS +LG++L+ + PD VT SL+ G C +R
Sbjct: 111 MEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNR 170
Query: 193 IMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPN 252
+ +A +L K+ G +P+++ Y+ +I+ LC+T A + F+E+ G+ PN
Sbjct: 171 VSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK----GI--RPN 224
Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLI 312
VTYT +++GLC A L M + I PNV+TY++L+ F EAK L
Sbjct: 225 VVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFE 284
Query: 313 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG 372
EM+ + P++VT++ +++ LC + ++DEA+++ DLM+ G + YNTL++GFC
Sbjct: 285 EMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAK 344
Query: 373 RVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYN 432
RV +LF M + + +Y+ LI G+ + +++ A +S+M GI PD+ YN
Sbjct: 345 RVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404
Query: 433 TLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRTFI 470
L GL + ++E+A +F++M++ + D TY T I
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVI 442
|
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| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 138/395 (34%), Positives = 222/395 (56%)
Query: 76 SSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNS 135
SSG + I ++A +F M+ RP P V FN LF +AK K Y+ VL+L K++ S
Sbjct: 61 SSG---LVGIKADDAVDLFRDMIQSRPLPT-VIDFNRLFSAIAKTKQYELVLALCKQMES 116
Query: 136 TGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIME 195
G+ +YT +I+INCFC+ ++S F +G+I++ + PD V FN+L+ GLC E R+ E
Sbjct: 117 KGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSE 176
Query: 196 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVT 255
A L ++ G +P +IT +TL+NGLC G A+ L + M E G +PN VT
Sbjct: 177 ALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMV----ETGF--QPNEVT 230
Query: 256 YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMM 315
Y +++ +CK G A EL KM++ NI + V Y+ +I G C + A L EM
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME 290
Query: 316 DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVN 375
+G + +++T+N ++ C G+ D+ ++LL MI+ + PN ++ L+D F G++
Sbjct: 291 IKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLR 350
Query: 376 RAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 435
A +L M + +Y+ LI+G+CK +E A+ + M+SKG PD++ +N L
Sbjct: 351 EADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILI 410
Query: 436 IGLFEIHQVERAFKLFDEMRRDGVAADTWTYRTFI 470
G + ++++ +LF EM GV A+T TY T +
Sbjct: 411 NGYCKANRIDDGLELFREMSLRGVIANTVTYNTLV 445
|
|
| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 128/358 (35%), Positives = 208/358 (58%)
Query: 109 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 168
+++I C + L++ ++ G PD+ T + L+N +C R+S ++ ++
Sbjct: 120 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179
Query: 169 LRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHT 228
+ + PD TF +LI GL ++ EA AL ++ GC+P+++TY T++NGLC+ G
Sbjct: 180 VEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDI 239
Query: 229 IVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 288
+ALNL +M E + + N V + TIID LCK V+ A +LF +M+ + I PNV
Sbjct: 240 DLALNLLNKM-----EAARI-KANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNV 293
Query: 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDL 348
VTYNSLI+ C W++A LL M+++ + PNVVTFN ++D K GK+ EA +L +
Sbjct: 294 VTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEE 353
Query: 349 MIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKE 408
MIQ + P+ YN L++GFC+ R++ AK++F M S C+ ++ +Y+ LING+CK K
Sbjct: 354 MIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKR 413
Query: 409 IEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTY 466
+E + L+ EM +G+ + V Y T+ G F+ + A +F +M + V D TY
Sbjct: 414 VEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTY 471
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00023872001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (660 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 470 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-35 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-26 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-20 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-09 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 1e-35
Identities = 91/381 (23%), Positives = 168/381 (44%), Gaps = 27/381 (7%)
Query: 89 EAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
EAF + N P +S+FN+L A ++ D L + + + GL D Y L
Sbjct: 424 EAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478
Query: 149 INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGC 208
I+ K G+V F V ++ + + TF +LI G CA + + KAFG
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG-CARAGQVA--------KAFGA 529
Query: 209 ---------EPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTI 259
+P+ + ++ LI+ ++G A ++ EM I +P+ +T +
Sbjct: 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI----DPDHITVGAL 585
Query: 260 IDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGV 319
+ G VD+AKE++ + + NI Y ++ DW+ A + +M +GV
Sbjct: 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645
Query: 320 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKE 379
+P+ V F+ ++D G +D+A +L + G++ Y++LM +A E
Sbjct: 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705
Query: 380 LFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF 439
L+ ++S + V + + LI C+ ++ AL + SEM G+ P+ + Y+ L +
Sbjct: 706 LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765
Query: 440 EIHQVERAFKLFDEMRRDGVA 460
+ L + + DG+
Sbjct: 766 RKDDADVGLDLLSQAKEDGIK 786
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-26
Identities = 79/327 (24%), Positives = 150/327 (45%), Gaps = 17/327 (5%)
Query: 118 AKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS-CFTPD 176
AK+ D + +F + + G+ +++T+ LI+ + G+V+ F G I+RS PD
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG-IMRSKNVKPD 541
Query: 177 AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCE-----PNVITYSTLINGLCRTGHTIVA 231
V FN+LI C +S ++ A F L E P+ IT L+ G A
Sbjct: 542 RVVFNALISA-CGQSGAVDRA--FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598
Query: 232 LNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 291
+++ + E + P YT ++ ++G D A ++ MK + + P+ V +
Sbjct: 599 KEVYQMIH----EYNIKGTPEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 292 NSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ 351
++L+ +A D ++A +L + QG++ V+++ +M +A L + +
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712
Query: 352 IGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEG 411
I +RP N L+ C ++ +A E+ M+ + +YSIL+ + + +
Sbjct: 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772
Query: 412 ALSLYSEMLSKGIKPDVVIYNTLFIGL 438
L L S+ GIKP++V+ + GL
Sbjct: 773 GLDLLSQAKEDGIKPNLVMCRCI-TGL 798
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 2e-20
Identities = 87/380 (22%), Positives = 156/380 (41%), Gaps = 60/380 (15%)
Query: 117 LAKNKHYDTVLSLFKRLNSTGLFP-DLYTYNILINCFCKMGRVSPGFV--VLGRILRSCF 173
L + L LF+ L + F TY+ L+ + S V V + S F
Sbjct: 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALK--SIRCVKAVYWHVESSGF 154
Query: 174 TPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALN 233
PD N ++ +++A LF ++ E N+ ++ T+I GL G+ A
Sbjct: 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFA 210
Query: 234 LFEEM------------------ANGNGEIGV------------VCEPNTVTYTTIIDGL 263
LF EM + G G V +T +ID
Sbjct: 211 LFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG-DTFVSCALIDMY 269
Query: 264 CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV 323
K G ++ A+ +F M ++ V +NS++ G+ EA CL EM D GV +
Sbjct: 270 SKCGDIEDARCVFDGMPEKT----TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNT-LMDGFCLTGRVNRAKELFV 382
TF++++ + ++ A + +I+ G P V NT L+D + GR+ A+ +F
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFD 384
Query: 383 SMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL-----FIG 437
M ++ S++ LI GY + A+ ++ M+++G+ P+ V + + + G
Sbjct: 385 RMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440
Query: 438 LFEIHQVERAFKLFDEMRRD 457
L E+ +++F M +
Sbjct: 441 L-----SEQGWEIFQSMSEN 455
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 82.8 bits (206), Expect = 5e-20
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 299
P+ VTY T+IDG CK+G V++A +LF +MK I PNV TY+ LI G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 6e-18
Identities = 77/322 (23%), Positives = 140/322 (43%), Gaps = 20/322 (6%)
Query: 136 TGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIME 195
TG D+ N LI + +G V R+ T DAV++ ++I G +
Sbjct: 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDK 372
Query: 196 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVT 255
A + ++ P+ IT +++++ G V + L E+A G I V N
Sbjct: 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL-HELAERKGLISYVVVANA-- 429
Query: 256 YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMM 315
+I+ K +DKA E+F + +++ V+++ S+I G N EA +M+
Sbjct: 430 ---LIEMYSKCKCIDKALEVFHNIPEKD----VISWTSIIAGLRLNNRCFEALIFFRQML 482
Query: 316 DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVN 375
++PN VT + + G + + +++ G+ + F+ N L+D + GR+N
Sbjct: 483 LT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541
Query: 376 RAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 435
A F N DV S++IL+ GY + + A+ L++ M+ G+ PD V + +L
Sbjct: 542 YAWNQF-----NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596
Query: 436 IGLFEIHQVERAFKLFDEMRRD 457
V + + F M
Sbjct: 597 CACSRSGMVTQGLEYFHSMEEK 618
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 7e-18
Identities = 80/361 (22%), Positives = 142/361 (39%), Gaps = 60/361 (16%)
Query: 140 PDLYTYNILINCFCKMGRVSPGFVVLGRILRSC--FTPDAVTFNSLIKGLCAESRIMEAA 197
PD +N LI+ + G V F VL + PD +T +L+K ++ A
Sbjct: 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599
Query: 198 ALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVV--------- 248
++ + + + Y+ +N + G AL+++++M + GV
Sbjct: 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK----KKGVKPDEVFFSAL 655
Query: 249 ------------------------CEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI 284
+ TV+Y++++ KA EL+ +K +
Sbjct: 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715
Query: 285 NPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASR 344
P V T N+LI C N +A +L EM G+ PN +T+++++ + D
Sbjct: 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775
Query: 345 LLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRA---KELFVSMESNRCMHDVFSYSILIN 401
LL + G++PN + + G CL R +A E VS +S R I
Sbjct: 776 LLSQAKEDGIKPNLVMCRCIT-GLCLR-RFEKACALGEPVVSFDSGRP-------QI--- 823
Query: 402 GYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAA 461
+NK AL +Y E +S G P + + + + L H +L + + G++A
Sbjct: 824 ---ENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENL---GISA 877
Query: 462 D 462
D
Sbjct: 878 D 878
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 8e-17
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 286 PNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK 335
P+VVTYN+LI G+C EA L EM +G++PNV T+++++D LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.2 bits (181), Expect = 1e-16
Identities = 22/49 (44%), Positives = 36/49 (73%)
Query: 321 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFC 369
P+VVT+N ++D CK GK++EA +L + M + G++PN + Y+ L+DG C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-15
Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 18/348 (5%)
Query: 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLG 166
+ S+N+L G AK ++D L L+ R+ G+ PD+YT+ ++ + ++ G V
Sbjct: 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211
Query: 167 RILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTG 226
++R F D N+LI ++ A +F ++ C I+++ +I+G G
Sbjct: 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENG 267
Query: 227 HTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP 286
+ L LF M + +P+ +T T++I G +E+ +
Sbjct: 268 ECLEGLELFFTM------RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321
Query: 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 346
+V NSLI + W EA+ + M + + V++ ++ KNG D+A
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETY 377
Query: 347 DLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN 406
LM Q V P+ +++ G ++ +L E + V + LI Y K
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 407 KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 454
K I+ AL ++ + K DV+ + ++ GL ++ A F +M
Sbjct: 438 KCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQM 481
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 3e-15
Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 175 PDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR 224
PD VT+N+LI G C + ++ EA LF ++K G +PNV TYS LI+GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 4e-15
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 356 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405
P+ YNTL+DG+C G+V A +LF M+ +V++YSILI+G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 6e-15
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK 265
P+V+TY+TLI+G C+ G AL LF EM +PN TY+ +IDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG------IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.0 bits (165), Expect = 2e-14
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 392 DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGL 438
DV +Y+ LI+GYCK ++E AL L++EM +GIKP+V Y+ L GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 1e-11
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 426 PDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRTFI 470
PDVV YNTL G + +VE A KLF+EM++ G+ + +TY I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 2e-11
Identities = 69/320 (21%), Positives = 126/320 (39%), Gaps = 40/320 (12%)
Query: 87 PNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYN 146
P++A + M SP ++ ++L C A D + L + GL + N
Sbjct: 370 PDKALETYALMEQDNVSPDEITIASVLSAC-ACLGDLDVGVKLHELAERKGLISYVVVAN 428
Query: 147 ILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAF 206
LI + K + V I D +++ S+I GL +R EA F ++
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLL- 483
Query: 207 GCEPNVITYSTLINGLCRTG-------------HTIVAL-----NLFEEMANGNGEIGV- 247
+PN +T ++ R G T + N ++ G +
Sbjct: 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543
Query: 248 -----VCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN 302
E + V++ ++ G G A ELF +M + +NP+ VT+ SL+ C +
Sbjct: 544 WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRS 602
Query: 303 DWNEAKCLLIEMMDQ--GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFV 360
M++ + PN+ + ++D L + GK+ EA ++ M + P+ V
Sbjct: 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAV 659
Query: 361 YNTLMDGFCLTGRVNRAKEL 380
+ L++ C R++R EL
Sbjct: 660 WGALLNA-C---RIHRHVEL 675
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 4e-11
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 249 CEPNTVTYTTIIDGLCKEGFVDKAKELFLKMK 280
+P+ VTY T+IDGLC+ G VD+A EL +M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 3e-10
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 206 FGCEPNVITYSTLINGLCRTGHTIVALNLFEEM 238
G +P+V+TY+TLI+GLCR G A+ L +EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 5e-10
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154
P V ++N L K + L LF + G+ P++YTY+ILI+ CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.5 bits (130), Expect = 8e-10
Identities = 17/33 (51%), Positives = 27/33 (81%)
Query: 317 QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLM 349
+G++P+VVT+N ++D LC+ G++DEA LLD M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 71/342 (20%), Positives = 144/342 (42%), Gaps = 24/342 (7%)
Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKG 186
L LF + + PDL T +I+ +G G + G ++++ F D NSLI+
Sbjct: 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332
Query: 187 LCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIG 246
+ EA +F++++ + ++++ +I+G + G AL + M N
Sbjct: 333 YLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDN---- 384
Query: 247 VVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNE 306
P+ +T +++ G +D +L + + + VV N+LI +++
Sbjct: 385 --VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI------EMYSK 436
Query: 307 AKCL--LIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTL 364
KC+ +E+ + +V+++ I+ L N + EA M+ + ++PN+
Sbjct: 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAA 495
Query: 365 MDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGI 424
+ G + KE+ + D F + L++ Y + + A + ++
Sbjct: 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----- 550
Query: 425 KPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTY 466
+ DVV +N L G + A +LF+ M GV D T+
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 292 NSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA-----SRLL 346
NS + C +A LL M + V + + V + LC+ + E SR L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAY-VALFRLCEWKRAVEEGSRVCSRAL 113
Query: 347 DLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN 406
+GVR + N ++ F G + A +F M R D+FS+++L+ GY K
Sbjct: 114 SSHPSLGVR----LGNAMLSMFVRFGELVHAWYVFGKM-PER---DLFSWNVLVGGYAKA 165
Query: 407 KEIEGALSLYSEMLSKGIKPDV 428
+ AL LY ML G++PDV
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDV 187
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 5e-09
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 394 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV 428
+Y+ LI+G CK +E AL L+ EM +GI+PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 4e-08
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 353 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385
G++P+ YNTL+DG C GRV+ A EL ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 6e-08
Identities = 66/294 (22%), Positives = 111/294 (37%), Gaps = 50/294 (17%)
Query: 178 VTFNSLIKGLCAESRIMEAAALFTKLKA-FGCEPNVITYSTLINGLCRTGHTIVALNLFE 236
V+ S I+ L A R EA LF L+A TY L+ ++
Sbjct: 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYW 147
Query: 237 EMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIH 296
+ + +G EP+ ++ K G + A+ LF +M + N+ ++ ++I
Sbjct: 148 HVES-SG-----FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIG 197
Query: 297 GFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRP 356
G A ++ EA L EM + G TF V++ G +L +++ GV
Sbjct: 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257
Query: 357 NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLY 416
+ FV L+D + G + A+ +F M +++ ++ GY AL Y
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGY--------ALHGY 305
Query: 417 SEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRTFI 470
SE A L+ EMR GV+ D +T+ I
Sbjct: 306 SE---------------------------EALCLYYEMRDSGVSIDQFTFSIMI 332
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 9e-08
Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 12/157 (7%)
Query: 275 LFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELC 334
+F KM + + + ++N L+ G+ A ++EA CL M+ GV+P+V TF ++ C
Sbjct: 143 VFGKMPERD----LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL-RTC 197
Query: 335 KNGKMDEA-SRLLDL-MIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHD 392
G D A R + +++ G + V N L+ + G V A+ +F M D
Sbjct: 198 -GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRD 252
Query: 393 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV 429
S++ +I+GY +N E L L+ M + PD++
Sbjct: 253 CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 9e-08
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 288
VTY T+IDGLCK G V++A ELF +MK+ I P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-07
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDENI 284
VTY ++I G CK G +++A ELF +MK++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 58/319 (18%), Positives = 122/319 (38%), Gaps = 28/319 (8%)
Query: 153 CKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEA-----AALFTKLKAFG 207
C G++ +L + D + +L + LC R +E + + + G
Sbjct: 62 CSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSHPSLG 120
Query: 208 CEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEG 267
+ +++ R G + A +F +M E + ++ ++ G K G
Sbjct: 121 VRLG----NAMLSMFVRFGELVHAWYVFGKMP----------ERDLFSWNVLVGGYAKAG 166
Query: 268 FVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFN 327
+ D+A L+ +M + P+V T+ ++ D + + ++ G + +V N
Sbjct: 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226
Query: 328 VIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387
++ K G + A + D M R + +N ++ G+ G ELF +M
Sbjct: 227 ALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFFTMREL 282
Query: 388 RCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERA 447
D+ + + +I+ + ++ ++ G DV + N+L + A
Sbjct: 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342
Query: 448 FKLFDEM-RRDGVAADTWT 465
K+F M +D V +WT
Sbjct: 343 EKVFSRMETKDAV---SWT 358
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 3e-07
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 283 NINPNVVTYNSLIHGFCYANDWNEAKCLLIEM 314
+ P+VVTYN+LI G C A +EA LL EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 4e-07
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 394 FSYSILINGYCKNKEIEGALSLYSEMLSKGI 424
+Y+ LI+GYCK ++E AL L+ EM KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 8e-07
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV 323
VTYN+LI G C A EA L EM ++G++P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 3e-06
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 389 CMHDVFSYSILINGYCKNKEIEGALSLYSEM 419
DV +Y+ LI+G C+ ++ A+ L EM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 3e-06
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 137 GLFPDLYTYNILINCFCKMGRV 158
GL PD+ TYN LI+ C+ GRV
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRV 23
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 6e-06
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 422 KGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMR 455
KG+KPDVV YNTL GL +V+ A +L DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 45/223 (20%), Positives = 99/223 (44%), Gaps = 19/223 (8%)
Query: 136 TGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIME 195
TG D+ L++ + K GR+ V R+ R + +++N+LI G R +
Sbjct: 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTK 409
Query: 196 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVT 255
A +F ++ A G PN +T+ +++ +G + +F+ M+ + +P +
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR-----IKPRAMH 464
Query: 256 YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCL---LI 312
Y +I+ L +EG +D+A + ++ P V + +L+ + + L
Sbjct: 465 YACMIELLGREGLLDEA---YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521
Query: 313 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR 355
M + + VV N+ +G+ EA+++++ + + G+
Sbjct: 522 GMGPEKLNNYVVLLNLYN----SSGRQAEAAKVVETLKRKGLS 560
|
Length = 697 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 1e-05
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 393 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP 426
+ +Y+ L+ K + + AL++ EM + G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 3e-05
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGV 354
VT+N ++ CK GK++EA L M + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 5e-05
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 173 FTPDAVTFNSLIKGLCAESRIMEAAALF 200
PD VT+N+LI GLC R+ EA L
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 5e-05
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQGV 319
VTYNSLI G+C A EA L EM ++GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 8e-05
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA 358
VT+N ++D LCK G+++EA L M + G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 9e-05
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 4/149 (2%)
Query: 322 NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELF 381
++ ++NV++ K G DEA L M+ GVRP+ + + ++ + R +E+
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210
Query: 382 VSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEI 441
+ DV + LI Y K ++ A ++ M + D + +N + G FE
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFEN 266
Query: 442 HQVERAFKLFDEMRRDGVAADTWTYRTFI 470
+ +LF MR V D T + I
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVI 295
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 178 VTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNV 212
VT+N+LI GLC R+ EA LF ++K G EP+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRC 389
YNTL+DG C GRV A ELF M+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 429 VIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADT 463
V YNTL GL + +VE A +LF EM+ G+ D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 3e-04
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 213 ITYSTLINGLCRTGHTIVALNLFEEM 238
+TY++LI+G C+ G AL LF+EM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRC 389
YN+L+ G+C G++ A ELF M+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 4e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 288 VVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQP 321
+ TYN+L+ A D + A +L EM G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 5e-04
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 323 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRP 356
+ T+N ++ L K G D A +L+ M G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 429 VIYNTLFIGLFEIHQVERAFKLFDEMRRDGV 459
V YN+L G + ++E A +LF EM+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 143 YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDA 177
TYN LI+ CK GRV + + PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.004
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP 286
TY ++ L K G D A + +MK + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.78 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.77 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.73 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.73 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.71 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.71 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.71 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.69 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.69 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.67 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.66 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.66 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.63 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.63 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.6 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.57 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.56 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.56 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.52 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.5 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.49 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.49 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.47 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.47 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.46 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.45 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.43 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.37 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.37 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.36 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.36 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.32 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.32 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.3 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.29 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.29 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.28 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.26 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.25 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.23 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.22 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.21 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.2 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.18 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.14 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.13 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.07 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.05 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.05 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.03 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.99 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.98 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.95 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.94 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.93 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.93 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.92 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.91 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.9 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.88 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.87 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.86 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.81 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.81 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.8 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.78 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.77 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.76 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.76 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.76 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.75 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.71 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.7 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.7 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.68 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.67 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.66 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.66 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.65 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.63 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.62 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.6 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.59 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.58 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.55 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.54 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.52 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.5 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.49 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.48 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.31 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.28 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.27 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.26 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.26 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.24 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.21 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.21 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.14 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.08 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.04 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.03 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.02 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.0 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.99 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.98 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.97 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.96 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.96 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.96 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.95 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.94 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.89 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.88 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.88 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.87 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.87 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.84 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.84 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.84 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.83 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.81 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.79 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.78 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.77 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.76 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.75 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.74 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.73 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.73 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.72 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.72 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.71 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.7 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.68 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.66 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.64 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.62 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.59 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.54 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.53 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.51 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.49 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.49 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.48 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.44 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.37 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.36 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.36 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.34 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.33 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.3 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.3 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.3 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.3 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.26 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.25 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.23 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.1 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.09 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.07 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.06 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.05 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.03 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.02 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.97 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.96 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.96 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.92 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.91 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.89 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.87 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.87 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.79 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.78 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.72 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.69 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.69 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.68 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.6 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.54 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.53 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.53 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.49 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.44 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.38 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.35 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.34 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.33 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.3 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.29 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.29 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.18 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.13 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.12 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.97 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.96 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.92 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.84 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.79 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.78 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.76 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.72 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.67 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.66 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.65 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.58 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.58 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.57 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.54 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.51 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.5 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.47 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.45 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.29 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.15 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.01 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.67 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.66 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.66 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.61 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.57 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.15 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.14 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.12 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.05 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.99 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.73 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.73 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.71 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.64 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.5 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.39 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.33 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.23 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.19 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.19 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.09 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.05 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.99 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.73 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.55 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.32 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.21 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.06 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.91 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 91.63 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.29 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.21 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.67 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.35 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.22 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.2 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.09 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.86 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.85 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.84 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.63 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.58 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.54 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.31 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.04 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.96 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.93 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.85 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.66 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.46 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 88.44 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.2 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.16 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.07 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.98 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 87.98 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.97 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 87.73 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.21 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.63 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.61 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 86.35 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 86.26 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.95 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.9 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 85.79 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.68 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.44 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.24 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 85.03 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.84 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.66 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.63 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.57 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 84.24 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.09 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.28 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.02 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 82.9 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 82.84 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 82.8 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 82.71 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.45 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.25 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 81.98 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 81.53 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.71 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=486.86 Aligned_cols=377 Identities=23% Similarity=0.414 Sum_probs=359.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVV 164 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 164 (470)
|.+++|+.+|+.|.. |+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++
T Consensus 420 g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~v 494 (1060)
T PLN03218 420 RAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494 (1060)
T ss_pred CCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 344444444444422 688899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 036577 165 LGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGE 244 (470)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 244 (470)
|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...+..
T Consensus 495 f~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g 574 (1060)
T PLN03218 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999863211
Q ss_pred CCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh
Q 036577 245 IGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVV 324 (470)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 324 (470)
+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 575 ----i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~ 650 (1060)
T PLN03218 575 ----IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650 (1060)
T ss_pred ----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYC 404 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (470)
+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.||.+|+
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~ 730 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhhhccC
Q 036577 405 KNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRTFI 470 (470)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 470 (470)
+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.|+.||..+|++||
T Consensus 731 k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999874
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=478.95 Aligned_cols=385 Identities=19% Similarity=0.308 Sum_probs=370.1
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 036577 79 EGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (470)
Q Consensus 79 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 158 (470)
..+.+.|++++|.++|+.|.+.+.. |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 3466789999999999999998887 899999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 036577 159 SPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKA--FGCEPNVITYSTLINGLCRTGHTIVALNLFE 236 (470)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 236 (470)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 5789999999999999999999999999999
Q ss_pred HHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 036577 237 EMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMD 316 (470)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (470)
.|.+.+ +.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+
T Consensus 604 ~M~e~g------i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 604 MIHEYN------IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHcC------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999988 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036577 317 QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSY 396 (470)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (470)
.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh-----------------------cCCHHHHHHHHHH
Q 036577 397 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE-----------------------IHQVERAFKLFDE 453 (470)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~ 453 (470)
+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ .+..++|..+|++
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e 837 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE 837 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876542 1234789999999
Q ss_pred HHHcCCCCChhhhhccC
Q 036577 454 MRRDGVAADTWTYRTFI 470 (470)
Q Consensus 454 m~~~g~~p~~~~~~~li 470 (470)
|.+.|+.||..||+.+|
T Consensus 838 M~~~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 838 TISAGTLPTMEVLSQVL 854 (1060)
T ss_pred HHHCCCCCCHHHHHHHH
Confidence 99999999999998875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-57 Score=451.89 Aligned_cols=373 Identities=21% Similarity=0.339 Sum_probs=350.3
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 036577 80 GDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 80 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
.+...|++++|+++|++|...++..|+..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.++.+|++.|+++
T Consensus 96 ~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~ 175 (697)
T PLN03081 96 KLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLI 175 (697)
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHH
Confidence 34567899999999999998776668999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 239 (470)
+|.++|++|. .||..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+++..|..+.+.+++..+.
T Consensus 176 ~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~ 251 (697)
T PLN03081 176 DARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251 (697)
T ss_pred HHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999996 479999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 036577 240 NGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGV 319 (470)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 319 (470)
+.+ ..+|..+|+.++.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 252 ~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 252 KTG------VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HhC------CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 888 789999999999999999999999999999864 5889999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036577 320 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSIL 399 (470)
Q Consensus 320 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 399 (470)
.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|+++|++++|.++|++|.+ ||..+|+.|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~l 397 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNAL 397 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998864 688999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCChhhhhccC
Q 036577 400 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR-DGVAADTWTYRTFI 470 (470)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li 470 (470)
|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|++||
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 999999999999999999999999999999999999999999999999999999975 69999999998875
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-55 Score=444.82 Aligned_cols=368 Identities=22% Similarity=0.328 Sum_probs=315.1
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 036577 79 EGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (470)
Q Consensus 79 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 158 (470)
..+.+.|++++|.++|+.|.. ++..+||.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 345678999999999999854 678899999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 036577 159 SPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (470)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 238 (470)
+.|.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|+++|++|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999974 79999999999999999999999999999
Q ss_pred HhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 036577 239 ANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQG 318 (470)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (470)
.+.+ +.||..+|+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+
T Consensus 381 ~~~g------~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-- 452 (857)
T PLN03077 381 EQDN------VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-- 452 (857)
T ss_pred HHhC------CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--
Confidence 8887 78999999999999999999999999998888888888888888888888888888888888877753
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------------------HcCCCCCHhHHHHH
Q 036577 319 VQPNVVTFNVIMDELCKNGKMDEASRLLDLMI----------------------------------QIGVRPNAFVYNTL 364 (470)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----------------------------------~~~~~~~~~~~~~l 364 (470)
+|..+|+.++.+|++.|+.++|..+|++|. +.|+.+|..+++.|
T Consensus 453 --~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 453 --KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred --CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 355556666666666666555555555554 44444444444455
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 036577 365 MDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQV 444 (470)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 444 (470)
+++|+++|++++|.++|+.+ .+|..+|+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++
T Consensus 531 i~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 55666666666666666655 4688899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HcCCCCChhhhhccC
Q 036577 445 ERAFKLFDEMR-RDGVAADTWTYRTFI 470 (470)
Q Consensus 445 ~~A~~~~~~m~-~~g~~p~~~~~~~li 470 (470)
++|.++|+.|. +.|+.|+..+|++|+
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999998 789999999998874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-54 Score=431.50 Aligned_cols=366 Identities=17% Similarity=0.288 Sum_probs=317.9
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 036577 80 GDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 80 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
.+.+.|++++|.++|+.|.+ |+..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|..++.+|++.|+.+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 45677888888888888853 6788889999999999999999999999988888888888888888888888888
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 239 (470)
.+.+++..+.+.|+.+|..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8888888888888888889999999999999999999999998864 688899999999999999999999999998
Q ss_pred hcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 036577 240 NGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGV 319 (470)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 319 (470)
..+ +.||..||+.++.+|++.|++++|.++++.|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.
T Consensus 318 ~~g------~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---- 387 (697)
T PLN03081 318 DSG------VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP---- 387 (697)
T ss_pred HcC------CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----
Confidence 877 7899999999999999999999999999999999999999999999999999999999999998886
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCCCHHHHHH
Q 036577 320 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES-NRCMHDVFSYSI 398 (470)
Q Consensus 320 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~ 398 (470)
.||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .++.|+..+|+.
T Consensus 388 ~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 4688899999999999999999999999999999999999999999999999999999999999975 588889999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhhhcc
Q 036577 399 LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAAD-TWTYRTF 469 (470)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 469 (470)
++++|++.|++++|.+++++| ++.|+..+|+.|+.+|..+|+.+.|.++++++.+ +.|+ ..+|..|
T Consensus 468 li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L 534 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVL 534 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHH
Confidence 999999999999999988876 6788888888888888888888888888777764 5554 3455543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-54 Score=438.59 Aligned_cols=370 Identities=24% Similarity=0.351 Sum_probs=262.6
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (470)
+.+.|+++.|+++|+.|.+ ++..+||.++.+|++.|++++|+++|++|...|+.||..||+.++.+|+..++++.
T Consensus 131 ~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 131 FVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 4577899999999999854 68889999999999999999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ||..+|++++.+|++.|+.++|+++|++|..
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888877777777777753 5777777777777777777777777777776
Q ss_pred cCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 036577 241 GNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ 320 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (470)
.+ +.||..+|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .
T Consensus 282 ~g------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~ 351 (857)
T PLN03077 282 LS------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----T 351 (857)
T ss_pred cC------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----C
Confidence 66 5666666666666666666666666666666666666666666666666655555555555555553 3
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036577 321 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILI 400 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (470)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555444444444444444
Q ss_pred HHHHHc-------------------------------CChhHHHHHHHHHHHCCC-------------------------
Q 036577 401 NGYCKN-------------------------------KEIEGALSLYSEMLSKGI------------------------- 424 (470)
Q Consensus 401 ~~~~~~-------------------------------g~~~~A~~~~~~~~~~~~------------------------- 424 (470)
.+|++. |+.++|+.+|++|.. ++
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 444444 444444444444442 23
Q ss_pred ----------------------------------------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 036577 425 ----------------------------------------KPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTW 464 (470)
Q Consensus 425 ----------------------------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (470)
.||..+|+.++.+|+++|+.++|.++|++|.+.|+.||..
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~ 590 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Confidence 3455678888899999999999999999999999999999
Q ss_pred hhhccC
Q 036577 465 TYRTFI 470 (470)
Q Consensus 465 ~~~~li 470 (470)
||+.+|
T Consensus 591 T~~~ll 596 (857)
T PLN03077 591 TFISLL 596 (857)
T ss_pred cHHHHH
Confidence 999875
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-26 Score=237.18 Aligned_cols=360 Identities=14% Similarity=0.149 Sum_probs=242.6
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 036577 80 GDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 80 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
.+...|++++|.+.|+.+....|. +..++..+...+.+.|++++|...++++.+.+ +.+...+..++..+...|+++
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPK--NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHH
Confidence 344566778888888887776665 67777777777777778888888777776654 455666777777777777777
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 239 (470)
+|.++++.+.+.. +.+..+|..++.+|...|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++++.
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777776643 4566677777777777777777777777776543 3345566777777777777777777777776
Q ss_pred hcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 036577 240 NGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGV 319 (470)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 319 (470)
... +.+..++..++..+...|++++|.++++.+.... +.+...+..+...+...|++++|...++.+...+
T Consensus 663 ~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~- 733 (899)
T TIGR02917 663 ELK-------PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA- 733 (899)
T ss_pred hcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 654 4456677777777777777777777777776653 3455666666667777777777777777766653
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036577 320 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSIL 399 (470)
Q Consensus 320 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 399 (470)
|+..++..++.++.+.|++++|...++.+.+..+. +...+..++..|...|+.++|...|+++.+.. +.+..+++.+
T Consensus 734 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 810 (899)
T TIGR02917 734 -PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNL 810 (899)
T ss_pred -CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 33355556666667777777777777766665433 56666666666766777777777777666654 4456666666
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036577 400 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (470)
+..+...|+ ++|+.+++++.+... -+..++..+...+...|++++|.++++++.+.+
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666666666 556666666665421 134455556666666666666666666666543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-25 Score=234.05 Aligned_cols=352 Identities=13% Similarity=0.064 Sum_probs=160.2
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
.|++++|...|+.+....|. +...+..++..+.+.|++++|..+++++.+.. +.+...|..+..++...|++++|..
T Consensus 546 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 622 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELNPQ--EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVS 622 (899)
T ss_pred cCCHHHHHHHHHHHHHhCcc--chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444444433 33444444444444455555555444444332 3344444444444444455555544
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 036577 164 VLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (470)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 243 (470)
.++++.+.. +.+...+..+..++...|++++|...|+++.+.. +.+..++..++..+...|++++|.++++.+....
T Consensus 623 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 699 (899)
T TIGR02917 623 SFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH- 699 (899)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 444444432 2233444444444444455555555444444321 2233444444444444455555555444444433
Q ss_pred CCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 036577 244 EIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV 323 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 323 (470)
+.+...+..+...+.+.|++++|.+.|+.+...+ |+..++..+..++.+.|++++|...++++.+.. +.+.
T Consensus 700 ------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~ 770 (899)
T TIGR02917 700 ------PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDA 770 (899)
T ss_pred ------cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 3334444444444444455555555444444432 222334444444444455555544444444432 3334
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
..+..+...|...|++++|...|+++.+..+ .+...++.++..+...|+ .+|..+++++.... +.+...+..+...+
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 4444444444444555555555544444432 234444444444444444 44444444444432 22333444444444
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 404 CKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 454 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (470)
...|++++|.++++++++.+.. +..++..+..++.+.|+.++|.+++++|
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555555444443322 4444444444444455555555444444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-23 Score=192.92 Aligned_cols=302 Identities=15% Similarity=0.109 Sum_probs=139.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCH
Q 036577 117 LAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD---AVTFNSLIKGLCAESRI 193 (470)
Q Consensus 117 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 193 (470)
+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..++..|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555555555555555543 33344455555555555555555555555544321111 12344445555555555
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHH
Q 036577 194 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAK 273 (470)
Q Consensus 194 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 273 (470)
++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+...++. .+...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~------------------- 178 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-----SLRVE------------------- 178 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-----cchHH-------------------
Confidence 55555555554431 223344444555555555555555555554443210 00000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036577 274 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG 353 (470)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 353 (470)
....+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+
T Consensus 179 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 179 -------------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred -------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 01122333444444555555555555544432 2223344444455555555555555555555433
Q ss_pred CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 036577 354 VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNT 433 (470)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 433 (470)
......+++.++.+|...|++++|...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...+..
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~ 320 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR 320 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence 22223344455555555555555555555554432 33333445555555555555555555555433 345555554
Q ss_pred HHHHHHh---cCCHHHHHHHHHHHHHcCCCCC
Q 036577 434 LFIGLFE---IHQVERAFKLFDEMRRDGVAAD 462 (470)
Q Consensus 434 l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~ 462 (470)
++..+.. .|+.+++..++++|.+.++.|+
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 4444442 3355555555555554444443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=187.62 Aligned_cols=369 Identities=15% Similarity=0.121 Sum_probs=311.9
Q ss_pred HhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHH
Q 036577 73 RFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT-YNILINC 151 (470)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~ 151 (470)
.+.+.+..+...|++++|+.+++.+++..|. .+.+|..+..++...|+.+.|.+.|.+.++. .|+... ...+...
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~p~--fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELKPK--FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcCch--hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHH
Confidence 3444444556678999999999999998887 8899999999999999999999999998886 465553 3446666
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChHH
Q 036577 152 FCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPN-VITYSTLINGLCRTGHTIV 230 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~ 230 (470)
+...|+..+|...+.+.++.. +-=..+|..|...+...|+...|+..|++..+. .|+ ...|..|...|...+.++.
T Consensus 194 lka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 777899999999998888763 233567889999999999999999999999875 455 6789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 036577 231 ALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCL 310 (470)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 310 (470)
|...|.+..... +-....+..+...|...|..+.|+..|++..+.. +.-...|+.|..++-..|+..+|.+.
T Consensus 271 Avs~Y~rAl~lr-------pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 271 AVSCYLRALNLR-------PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred HHHHHHHHHhcC-------CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHH
Confidence 999999998765 5567888899999999999999999999998863 22467899999999999999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 036577 311 LIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCM 390 (470)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 390 (470)
+.+..... +.-....+.|..+|...|.+++|..+|....+..+. -....+.|...|-.+|++++|...+++.++- .
T Consensus 343 YnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~ 418 (966)
T KOG4626|consen 343 YNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--K 418 (966)
T ss_pred HHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--C
Confidence 99998874 445678889999999999999999999999886433 3567889999999999999999999998875 4
Q ss_pred C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 036577 391 H-DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTW 464 (470)
Q Consensus 391 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (470)
| -...|+.+...|-..|+.+.|+..+.+.+.. .|. ...++.|...|...|+..+|+.-++...+ ++||..
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfp 490 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFP 490 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCc
Confidence 4 5678999999999999999999999999854 565 35888999999999999999999999988 778753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-21 Score=192.47 Aligned_cols=372 Identities=15% Similarity=0.062 Sum_probs=294.2
Q ss_pred HHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 71 RERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 150 (470)
...++..|..+...|++++|+..|+.++...| +...|..+..+|.+.|++++|++.++..++.+ +.+...+..+..
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~ 202 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 44566778888899999999999999998775 45678999999999999999999999999875 557789999999
Q ss_pred HHHhcCCcchHHHHHHHHHhCCC-----------------------------CCCHHHHHHH------------------
Q 036577 151 CFCKMGRVSPGFVVLGRILRSCF-----------------------------TPDAVTFNSL------------------ 183 (470)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l------------------ 183 (470)
++...|++++|+..|..+...+. +.+...+..+
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 99999999999876654432110 0000000000
Q ss_pred ------------HHHH------HhcCCHHHHHHHHHHHHhcC--CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 036577 184 ------------IKGL------CAESRIMEAAALFTKLKAFG--CEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (470)
Q Consensus 184 ------------~~~~------~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 243 (470)
+..+ ...+++++|.+.|++..+.+ .+.....|..+...+...|++++|+..+++.....
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~- 361 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD- 361 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 0000 12357889999999998764 22345678888889999999999999999998865
Q ss_pred CCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 036577 244 EIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV 323 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 323 (470)
+.+...|..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|...|++..+.. +.+.
T Consensus 362 ------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~ 433 (615)
T TIGR00990 362 ------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI 433 (615)
T ss_pred ------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence 4457788999999999999999999999998764 3467889999999999999999999999999875 5567
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH------HHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDV------FSYS 397 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~ 397 (470)
..+..+..++.+.|++++|+..+++.++..+. +...++.+...+...|++++|...|++........+. ..++
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 77888899999999999999999999987433 6788999999999999999999999998876422111 1122
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 398 ILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
..+..+...|++++|.+++++.++... .+...+..+...+.+.|++++|.++|++..+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 223334457999999999999987642 24457888999999999999999999999763
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-23 Score=193.11 Aligned_cols=297 Identities=15% Similarity=0.131 Sum_probs=209.2
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD---LYTYNILINCFCKMGR 157 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~ 157 (470)
....|++++|+..|..+++.+|. +..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPE--TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 45668999999999999998876 788999999999999999999999999987642222 3567889999999999
Q ss_pred cchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCChHHHHH
Q 036577 158 VSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNV----ITYSTLINGLCRTGHTIVALN 233 (470)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~a~~ 233 (470)
+++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++++.+.+..+.. ..+..+...+.+.|++++|.+
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999998763 557789999999999999999999999999876432211 134556667778888888888
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIE 313 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (470)
.|+++.+.. +.+...+..+...+.+.|++++|.++++++...+......+++.++.+|.+.|++++|...+++
T Consensus 202 ~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 202 LLKKALAAD-------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHhHC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888887654 3345566677777777777777777777776643222234455566666666666666666666
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCC
Q 036577 314 MMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL---TGRVNRAKELFVSMESNRCM 390 (470)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~ 390 (470)
+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.
T Consensus 275 ~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 6554 234344455555556666666666666655554 3455555555544442 33555555555555554433
Q ss_pred C
Q 036577 391 H 391 (470)
Q Consensus 391 ~ 391 (470)
|
T Consensus 351 ~ 351 (389)
T PRK11788 351 R 351 (389)
T ss_pred C
Confidence 3
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-21 Score=186.59 Aligned_cols=326 Identities=11% Similarity=0.040 Sum_probs=272.5
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (470)
....|++++|+.+++..+...|. +...+..++.++...|++++|+..|+++.+.. +.+...+..+...+...|++++
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 34678999999999999999987 66777778888889999999999999999875 6677889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
|...++++++.. +.+...+..++..+...|++++|...++++.... +.+...+..+ ..+...|++++|...++.+..
T Consensus 129 Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 129 VADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 999999999863 5567888999999999999999999999887653 2233333333 457889999999999999877
Q ss_pred cCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHHHH
Q 036577 241 GNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNE----AKCLLIEMMD 316 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~ 316 (470)
.. ..++...+..+...+...|++++|...++.+.... +.+...+..+...+...|++++ |...+++..+
T Consensus 206 ~~------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 206 FF------ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred cC------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 65 12344455666788899999999999999998864 4467888889999999999986 8999999988
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036577 317 QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSY 396 (470)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (470)
.. +.+...+..+...+.+.|++++|...+++..+..+. +...+..+..++...|++++|...++++...+ +.+...+
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~ 355 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWN 355 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHH
Confidence 74 556778999999999999999999999999988654 56778889999999999999999999998764 2233445
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 397 SILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
..+..++...|+.++|+..|++..+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55677899999999999999999876
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-20 Score=185.33 Aligned_cols=332 Identities=11% Similarity=0.039 Sum_probs=277.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 109 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLC 188 (470)
Q Consensus 109 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (470)
-...++..+.+.|++++|..+++...... +.+...+..++.++...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34556777889999999999999998875 5556677777888889999999999999999874 556788899999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC
Q 036577 189 AESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF 268 (470)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (470)
..|++++|...++++.... +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-------P~~~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-------PPRGDMIATC-LSFLNKSR 192 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------CCCHHHHHHH-HHHHHcCC
Confidence 9999999999999998752 3456788889999999999999999999887765 3344444444 34788999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH----HHH
Q 036577 269 VDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDE----ASR 344 (470)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~ 344 (470)
+++|...++.+......++...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 99999999998876433445555666788899999999999999999875 5567788889999999999986 899
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 036577 345 LLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGI 424 (470)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 424 (470)
.++++.+..+. +...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|+..++++.+.
T Consensus 272 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~-- 347 (656)
T PRK15174 272 HWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE-- 347 (656)
T ss_pred HHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 99999988654 77889999999999999999999999998864 446778888999999999999999999999875
Q ss_pred CCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 425 KPDVV-IYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 425 ~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.|+.. .+..+..++...|+.++|...|++..+
T Consensus 348 ~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 348 KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44443 344456788999999999999999986
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-20 Score=195.75 Aligned_cols=370 Identities=10% Similarity=0.049 Sum_probs=273.4
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHH-----------
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFP-DLYTY----------- 145 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~----------- 145 (470)
|..+...|++++|+..|+.+++..|. +..++..+..++.+.|++++|+..|++..+..-.. ....+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK--DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 44556789999999999999998886 88999999999999999999999999998764211 11111
Q ss_pred -HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHH------
Q 036577 146 -NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTL------ 218 (470)
Q Consensus 146 -~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l------ 218 (470)
......+.+.|++++|...++++++.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 223456778999999999999999874 4567788889999999999999999999988753 2223333222
Q ss_pred ------------------------------------HHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHH
Q 036577 219 ------------------------------------INGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDG 262 (470)
Q Consensus 219 ------------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (470)
...+...|++++|++.|++..+.. +.+...+..+...
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-------P~~~~~~~~LA~~ 504 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-------PGSVWLTYRLAQD 504 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 233456788899999999888765 4567778888889
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-------------------------
Q 036577 263 LCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ------------------------- 317 (470)
Q Consensus 263 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------------------- 317 (470)
|.+.|++++|...++++.+.. +.+...+..+...+...+++++|...++.+...
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999887643 223333333333333444444444443322100
Q ss_pred --------------CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHH
Q 036577 318 --------------GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVS 383 (470)
Q Consensus 318 --------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (470)
..+.+...+..+...+.+.|++++|+..++.+.+..+. +...+..++..+...|+.++|++.++.
T Consensus 584 ~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 584 RDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 12445556677788888999999999999999887544 678888899999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--C---CHhHHHHHHHHHHhcCCHHHHHHHHHHHH-Hc
Q 036577 384 MESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK--P---DVVIYNTLFIGLFEIHQVERAFKLFDEMR-RD 457 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~ 457 (470)
+.+.. +.+...+..+..++...|++++|.+++++++..... | +...+..+...+...|++++|+..|++.. ..
T Consensus 663 ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 663 LPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 77653 336667777888888999999999999998865322 1 22456666788889999999999998886 34
Q ss_pred CCCC
Q 036577 458 GVAA 461 (470)
Q Consensus 458 g~~p 461 (470)
|+.|
T Consensus 742 ~~~~ 745 (1157)
T PRK11447 742 GITP 745 (1157)
T ss_pred CCCC
Confidence 5544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-21 Score=173.62 Aligned_cols=338 Identities=17% Similarity=0.152 Sum_probs=291.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCH-HHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDA-VTFNSLI 184 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 184 (470)
-..+|..+...+-..|++++|+.+|+.+.+.. +.....|..+..++...|+.+.|.+.|...++. .|+. .+...+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 57789999999999999999999999999875 557889999999999999999999999999886 4543 3445566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHH
Q 036577 185 KGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC 264 (470)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (470)
..+...|++++|...|.+..+.. +--.+.|+.|...+-..|+.-.|++.|++....+ +.-...|-.|...|.
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-------P~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-------PNFLDAYINLGNVYK 263 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-------CcchHHHhhHHHHHH
Confidence 66777999999999998888752 2337789999999999999999999999999876 445678999999999
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 036577 265 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASR 344 (470)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 344 (470)
..+.++.|...|.+..... +.....+..+...|...|+.+-|+..+++.++.. +.-...|+.|..++-..|++.+|.+
T Consensus 264 e~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred HHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHH
Confidence 9999999999999887753 2356778888888999999999999999999874 3346789999999999999999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 036577 345 LLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGI 424 (470)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 424 (470)
.+.+....... .....+.|...|...|.+++|..+|....+-. +--...++.|...|-++|++++|+..+++.+ .+
T Consensus 342 cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI 417 (966)
T KOG4626|consen 342 CYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEAL--RI 417 (966)
T ss_pred HHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHH--hc
Confidence 99999988544 57788999999999999999999999988753 2246678999999999999999999999999 56
Q ss_pred CCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 036577 425 KPDV-VIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAAD 462 (470)
Q Consensus 425 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 462 (470)
.|+. ..|+.+...|-..|+.+.|.+.+.+.+. +.|.
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt 454 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPT 454 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcH
Confidence 7875 4899999999999999999999999987 5554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-18 Score=173.53 Aligned_cols=363 Identities=10% Similarity=0.022 Sum_probs=228.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVV 164 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 164 (470)
|+.++|++++.......+. +...+..+...+...|++++|.++|++..+.. +.+...+..+..++...|++++|+..
T Consensus 29 g~~~~A~~~~~~~~~~~~~--~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQL--PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred CCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555554442222 34444555555555555555555555544432 33344444444455555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh----------------
Q 036577 165 LGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHT---------------- 228 (470)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~---------------- 228 (470)
++++++.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...|..
T Consensus 106 l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~ 182 (765)
T PRK10049 106 AKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAE 182 (765)
T ss_pred HHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH
Confidence 55554431 22333 4444445555555555555555554432 11222233333333333333
Q ss_pred ------------------------------HHHHHHHHHHHhcCCCCCcccCCCHh-hH----HHHHHHHHhCCCHHHHH
Q 036577 229 ------------------------------IVALNLFEEMANGNGEIGVVCEPNTV-TY----TTIIDGLCKEGFVDKAK 273 (470)
Q Consensus 229 ------------------------------~~a~~~~~~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~~g~~~~a~ 273 (470)
++|++.++.+....+ ..|+.. .+ ...+..+...|++++|+
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~-----~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~ 257 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH-----DNPDATADYQRARIDRLGALLARDRYKDVI 257 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc-----cCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 445555555554321 112211 11 11134456779999999
Q ss_pred HHHHHHHhCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036577 274 ELFLKMKDENIN-PNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQP---NVVTFNVIMDELCKNGKMDEASRLLDLM 349 (470)
Q Consensus 274 ~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 349 (470)
..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+..... .......+..++...|++++|..+++.+
T Consensus 258 ~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 258 SEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred HHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 999999887532 332 22335778999999999999999987653111 1345666777889999999999999999
Q ss_pred HHcCC-----------CCC---HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 036577 350 IQIGV-----------RPN---AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSL 415 (470)
Q Consensus 350 ~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 415 (470)
.+..+ .|+ ...+..+...+...|+.++|+++++++.... +.+...+..++..+...|++++|++.
T Consensus 337 ~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 337 INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 87632 123 2345667788899999999999999998764 55788999999999999999999999
Q ss_pred HHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 036577 416 YSEMLSKGIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTW 464 (470)
Q Consensus 416 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (470)
+++.++. .|+ ...+..+...+...|++++|..+++++++ ..|+..
T Consensus 416 l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~ 461 (765)
T PRK10049 416 LKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDP 461 (765)
T ss_pred HHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCH
Confidence 9999975 455 55777778889999999999999999997 555543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-18 Score=178.98 Aligned_cols=256 Identities=13% Similarity=0.091 Sum_probs=197.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC------------------C------
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGL------------------F------ 139 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~------------------~------ 139 (470)
.|+.++|++.|+.+.+..|. +...+..+...+...|++++|+..++++.+... .
T Consensus 160 ~g~~~~A~~~L~~ll~~~P~--~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 160 PAQRPEAINQLQRLNADYPG--NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 47899999999999999887 788899999999999999999999998755320 0
Q ss_pred --------CCHHHH---------------------HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 140 --------PDLYTY---------------------NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAE 190 (470)
Q Consensus 140 --------~~~~~~---------------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (470)
|+.... ......+...|++++|+..|++.++.. +.+..++..+..+|.+.
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~ 316 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQ 316 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 100000 012345667899999999999999864 45788999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCc---chHH------------HHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhh
Q 036577 191 SRIMEAAALFTKLKAFGCEPNV---ITYS------------TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVT 255 (470)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~~---~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (470)
|++++|+..|++..+.. |+. ..|. .....+.+.|++++|++.|+++.... +.+...
T Consensus 317 g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-------P~~~~a 387 (1157)
T PRK11447 317 GDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-------NTDSYA 387 (1157)
T ss_pred CCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHH
Confidence 99999999999998754 322 1121 22446778999999999999999876 556778
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHH------------------------------------------
Q 036577 256 YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS------------------------------------------ 293 (470)
Q Consensus 256 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 293 (470)
+..+..++...|++++|++.|+++.+... .+...+..
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 466 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ 466 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH
Confidence 88899999999999999999999887532 22333222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036577 294 LIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG 353 (470)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 353 (470)
+...+...|++++|++.+++..+.. +-+...+..+...|.+.|++++|...++++.+..
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2234456788999999999888774 4456677788889999999999999999887753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-18 Score=166.61 Aligned_cols=344 Identities=11% Similarity=-0.002 Sum_probs=268.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 108 SSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGL 187 (470)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (470)
..+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34667788899999999999999998875 5788899999999999999999999999999874 45678899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcC-----------------------------CCCCcchHHHHHHH-----------------
Q 036577 188 CAESRIMEAAALFTKLKAFG-----------------------------CEPNVITYSTLING----------------- 221 (470)
Q Consensus 188 ~~~g~~~~a~~~~~~~~~~g-----------------------------~~~~~~~~~~l~~~----------------- 221 (470)
...|++++|+..|......+ .+.+...+..+...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 99999999987664432210 01111111111000
Q ss_pred -------------H------HhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 036577 222 -------------L------CRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 282 (470)
Q Consensus 222 -------------~------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (470)
. ...+++++|.+.|+.....+.. .+.....+..+...+...|++++|+..+++....
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~----~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL----GEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0 1235788999999998876421 1345567888889999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 036577 283 NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYN 362 (470)
Q Consensus 283 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 362 (470)
. +.....|..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|...|++.++..+. +...+.
T Consensus 361 ~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~ 437 (615)
T TIGR00990 361 D-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHI 437 (615)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHH
Confidence 3 2346688889999999999999999999998874 556788999999999999999999999999988644 677788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-----h-HHHHHHH
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV-----V-IYNTLFI 436 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~-~~~~l~~ 436 (470)
.+..++.+.|++++|...|++.+... +.+...|+.+..++...|++++|++.|++.++.....+. . .++..+.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 89999999999999999999988763 447889999999999999999999999999875322111 1 1122222
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 036577 437 GLFEIHQVERAFKLFDEMRRDGVAADTW 464 (470)
Q Consensus 437 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (470)
.+...|++++|.+++++..+ +.|+..
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~--l~p~~~ 542 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALI--IDPECD 542 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 33446999999999999887 455543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-16 Score=157.55 Aligned_cols=192 Identities=9% Similarity=-0.006 Sum_probs=102.7
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-----CCCCHhHHHHHHHHHHHc
Q 036577 262 GLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQG-----VQPNVVTFNVIMDELCKN 336 (470)
Q Consensus 262 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 336 (470)
++...|++.++++.|+.+...+.+....+-..+.++|...+++++|..++..+.... .+++......|.-++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 444555566666666666655544344455556666666666666666666654432 112222334555566666
Q ss_pred CCHHHHHHHHHHHHHcCC-------------CCCH-hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036577 337 GKMDEASRLLDLMIQIGV-------------RPNA-FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILING 402 (470)
Q Consensus 337 g~~~~a~~~~~~~~~~~~-------------~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (470)
+++++|..+++.+.+..+ .||- ..+..++..+...|++.+|++.++.+.... |-|......+...
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v 459 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASI 459 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 666666666666655211 1111 122334445555666666666666665442 3356666666666
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 403 YCKNKEIEGALSLYSEMLSKGIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+...|.+.+|.+.++..... .|+ ..+....+.++...|++++|..+.+.+.+
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 66666666666666554433 332 33444555556666666666666655554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-16 Score=160.74 Aligned_cols=345 Identities=10% Similarity=0.007 Sum_probs=262.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
+.....-.+.+....|+.++|++++.+..... +.+...+..+...+.+.|++++|.+++++.++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 55555566777888999999999999998633 5667789999999999999999999999998863 556777888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK 265 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (470)
.+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.... +.+...+..+..++..
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-------P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-------PQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHH
Confidence 9999999999999999998762 33455 8888899999999999999999999876 4566666667777766
Q ss_pred CCCHHHHHHHHH----------------------------------------------HHHhC-CCCCCHH-HH----HH
Q 036577 266 EGFVDKAKELFL----------------------------------------------KMKDE-NINPNVV-TY----NS 293 (470)
Q Consensus 266 ~g~~~~a~~~~~----------------------------------------------~~~~~-~~~~~~~-~~----~~ 293 (470)
.|..++|++.++ .+... ...|+.. .+ ..
T Consensus 163 ~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 163 NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 666665554444 33321 1112111 11 11
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHH
Q 036577 294 LIHGFCYANDWNEAKCLLIEMMDQGVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRP---NAFVYNTLMDGFC 369 (470)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 369 (470)
.+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+.+.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 133456779999999999999887532 332 22235778999999999999999988764321 1345666777889
Q ss_pred cCCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 370 LTGRVNRAKELFVSMESNRC-----------MHD---VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 435 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 435 (470)
..|++++|..+++.+.+... .|+ ...+..+...+...|++++|+++++++.... +.+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 99999999999999887531 122 2345677888999999999999999998763 33567888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 036577 436 IGLFEIHQVERAFKLFDEMRRDGVAADTWT 465 (470)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 465 (470)
..+...|++++|++.+++..+ +.|+...
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~--l~Pd~~~ 428 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEV--LEPRNIN 428 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHh--hCCCChH
Confidence 999999999999999999998 6687543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-14 Score=147.75 Aligned_cols=354 Identities=10% Similarity=0.027 Sum_probs=257.2
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCcc-
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST--GLFPDLYTYNILINCFCKMGRVS- 159 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~- 159 (470)
..+...+|....+.+.+..|. +....-.+.-...+.|+.++|.++|+..... +...+......++..|.+.+...
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~--~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPA--NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 446777888888888887665 6666667777778899999999999988763 12234445557788888776632
Q ss_pred --hHHHH----------------------HHHHHh-CC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 036577 160 --PGFVV----------------------LGRILR-SC-FTP--DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPN 211 (470)
Q Consensus 160 --~a~~~----------------------~~~~~~-~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~ 211 (470)
++..+ .+.... .+ -++ +...|..+..++.. ++.++|...+.+.... .|+
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd 508 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPD 508 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCc
Confidence 22222 111111 01 133 66778888888776 7888898877777664 355
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 036577 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 291 (470)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 291 (470)
......+...+...|++++|...|+++... +|+...+..+..++.+.|+.++|...++.....+ +.+...+
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--------~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~ 579 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--------DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALY 579 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHH
Confidence 444334445556889999999999987553 3444556677788888999999999999888764 2233333
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT 371 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (470)
..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++..+..+. +...++.+..++...
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 34444455669999999999998877 456778888888999999999999999999888654 677888888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCCHHHHHHH
Q 036577 372 GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV-VIYNTLFIGLFEIHQVERAFKL 450 (470)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 450 (470)
|+.++|+..+++..+.. +-+...+..+..++...|++++|+..+++.++. .|+. .+.........+..+++.|.+-
T Consensus 657 G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~ 733 (987)
T PRK09782 657 GDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEE 733 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999888764 447888889999999999999999999999865 4544 4555556666777777788777
Q ss_pred HHHHHH
Q 036577 451 FDEMRR 456 (470)
Q Consensus 451 ~~~m~~ 456 (470)
+++...
T Consensus 734 ~~r~~~ 739 (987)
T PRK09782 734 VGRRWT 739 (987)
T ss_pred HHHHhh
Confidence 777665
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-15 Score=128.55 Aligned_cols=348 Identities=13% Similarity=0.141 Sum_probs=265.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
+..++..+|.++++--..+.|.++|++......+.+..+||.+|.+-.-. ...+++.+|.+....||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 77899999999999999999999999998887789999999999765432 33789999999999999999999999
Q ss_pred HHHhcCCHHH----HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH-HHHHHHHHHhc--CCCCCcccCCCHhhHHH
Q 036577 186 GLCAESRIME----AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIV-ALNLFEEMANG--NGEIGVVCEPNTVTYTT 258 (470)
Q Consensus 186 ~~~~~g~~~~----a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 258 (470)
+..+.|+++. |.+++.+|++.|+.|...+|..++..+++.++..+ +..++.++.+. |+.+....+.|...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999998776 46778889999999999999999999999888744 45555554432 33334445567778888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhC----CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 036577 259 IIDGLCKEGFVDKAKELFLKMKDE----NINPN---VVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMD 331 (470)
Q Consensus 259 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 331 (470)
.+..|.+..+.+-|.++...+... -+.|+ ..-|..+....++....+.....|+.|.-.-+-|+..+...++.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 999999999999999988776543 11222 23356677777888889999999999998888889999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC-CH--------H-----HHHHHH-------HHHHHCCCC
Q 036577 332 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG-RV--------N-----RAKELF-------VSMESNRCM 390 (470)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~A~~~~-------~~~~~~~~~ 390 (470)
+..-.|.++-.-+++.+++..|...+.....-++..+++.. +. . -|..++ .++.+. .
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~ 519 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--D 519 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--c
Confidence 99999999999999999988876555554444444444333 11 0 111111 122222 3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 036577 391 HDVFSYSILINGYCKNKEIEGALSLYSEMLSKGI----KPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGV 459 (470)
Q Consensus 391 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (470)
......+.++..+.+.|+.++|.+++.-+..++- .|......-+++.-.+.+....|..+++-|...+.
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 3566778888889999999999999999865532 23333444566777788899999999998876554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-15 Score=144.83 Aligned_cols=390 Identities=14% Similarity=0.093 Sum_probs=263.9
Q ss_pred HHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 71 RERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 150 (470)
++.+--.|..+-..|++++|...|....+..+. ..+..+-.+...+.+.|+++.+...|+...+.. +.+..+...|..
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d-~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADND-NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC-CccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHh
Confidence 344445666777888999999999888887776 226667778888999999999999999988874 556677777777
Q ss_pred HHHhcC----CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhcCCCCCcchHHHHHHHH
Q 036577 151 CFCKMG----RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKL----KAFGCEPNVITYSTLINGL 222 (470)
Q Consensus 151 ~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~g~~~~~~~~~~l~~~~ 222 (470)
.|...+ ..+.|..++.+..+.- +.|...|-.+...|-....+.. +.+|... ...+.++.....|.+....
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 777765 4566666666666553 4566677666666654443333 5555443 3444456667777777777
Q ss_pred HhcCChHHHHHHHHHHHhcCC---CCCcccCCCHhhHHHHHHHHHhCCCHH-----------------------------
Q 036577 223 CRTGHTIVALNLFEEMANGNG---EIGVVCEPNTVTYTTIIDGLCKEGFVD----------------------------- 270 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~----------------------------- 270 (470)
...|++++|...|......-. .....-.++..+-..+....-..++.+
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD 542 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHh
Confidence 777777777777777665511 000000122222223333333344444
Q ss_pred -----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHH---------
Q 036577 271 -----KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQG-VQPNVVTFNVIMDELCK--------- 335 (470)
Q Consensus 271 -----~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--------- 335 (470)
+|...+......+ ..++..+..+...+.+...|..|.+-|....+.- ..+|..+...|...|.+
T Consensus 543 k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 4444444444331 2244445555556666666666666555554432 13466666666665543
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q 036577 336 ---NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGA 412 (470)
Q Consensus 336 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 412 (470)
.+..++|+++|.++++..++ |...-|.+.-+++..|++.+|..+|.++.+.. .....+|-.+.++|...|++..|
T Consensus 622 ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHH
Confidence 23567899999999988765 88888999999999999999999999998864 23556889999999999999999
Q ss_pred HHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhhh
Q 036577 413 LSLYSEMLSK-GIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYR 467 (470)
Q Consensus 413 ~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 467 (470)
+++|+...+. ...-+..+...|..++.+.|++.+|.+.+.........-..+.|+
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 9999987664 445567788899999999999999999999998854444444444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-14 Score=144.43 Aligned_cols=323 Identities=10% Similarity=0.006 Sum_probs=250.6
Q ss_pred cccCChhHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCC---hHHHHHH----------------------HHHHHh
Q 036577 82 ITTITPNEAFCIFDYMLNMRP-SPPPVSSFNILFGCLAKNKH---YDTVLSL----------------------FKRLNS 135 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~-~~~~~~~~~~l~~~~~~~~~---~~~A~~~----------------------~~~m~~ 135 (470)
+..|+.++|..+|+......+ ...+...-..++..|.+.+. ..++..+ ++....
T Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
T PRK09782 387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR 466 (987)
T ss_pred HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHH
Confidence 467889999999999987422 22445556688888888766 3333333 111111
Q ss_pred C-CC-CC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 036577 136 T-GL-FP--DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPN 211 (470)
Q Consensus 136 ~-~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~ 211 (470)
. +. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~ 541 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMS 541 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCC
Confidence 1 11 34 67788888888877 8999999988888776 456555444556667899999999999998654 455
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 036577 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 291 (470)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 291 (470)
...+..+...+.+.|+.++|...+++..... +.+...+..+.......|++++|...+++..+. .|+...+
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-------P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~ 612 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-------LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAY 612 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHH
Confidence 5667777888999999999999999998765 344444445555556679999999999999986 4678899
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT 371 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (470)
..+..++.+.|++++|+..+++..+.. +.+...++.+..++...|++++|+..+++..+..+. +...+..+..++...
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~l 690 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 999999999999999999999999885 556778888889999999999999999999998654 778899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 372 GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
|++++|+..+++..+.. +-+..+.........+..+++.|.+-+++...
T Consensus 691 Gd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 691 DDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred CCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998864 23445666667777777788888887777654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-14 Score=136.38 Aligned_cols=363 Identities=14% Similarity=0.108 Sum_probs=283.6
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGF 162 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 162 (470)
..|++++|.+++.+++++.|. ...+|.+|..+|-+.|+.+++...+-..-..+ +.|...|..+.....+.|.+++|.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 458999999999999999987 88999999999999999999998875554443 667889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc----hHHHHHHHHHhcCChHHHHHHHHHH
Q 036577 163 VVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVI----TYSTLINGLCRTGHTIVALNLFEEM 238 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~ 238 (470)
-.|.+.++.. +++...+---+..|-+.|+...|..-|.++.....+.|.. .-..++..+...++.+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999985 5566666667888999999999999999998764222222 2234466677788889999999998
Q ss_pred HhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC---------------------------CCCHHHH
Q 036577 239 ANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI---------------------------NPNVVTY 291 (470)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------------------------~~~~~~~ 291 (470)
..... ...+...++.++..+.+...++.|......+..... .++..++
T Consensus 307 ~s~~~-----~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 307 LSKEK-----DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred Hhhcc-----ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 87443 245667788999999999999999988877766221 2222221
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQGV--QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFC 369 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (470)
-+.-++...+..+....+.....+..+ .-+...|.-+..++...|++.+|+.++..+......-+...|-.++.+|.
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 122334455555555566666666653 33566788899999999999999999999998866667889999999999
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH--------CCCCCCHhHHHHHHHHHHhc
Q 036577 370 LTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLS--------KGIKPDVVIYNTLFIGLFEI 441 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~p~~~~~~~l~~~~~~~ 441 (470)
..|..++|.+.|+.++... +.+...--.|...+.+.|+.|+|.+.++.+.. .+..|+..........+...
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998864 33666667788889999999999999998542 24566666667777888899
Q ss_pred CCHHHHHHHHHHHHH
Q 036577 442 HQVERAFKLFDEMRR 456 (470)
Q Consensus 442 g~~~~A~~~~~~m~~ 456 (470)
|+.++-......|+.
T Consensus 540 gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 540 GKREEFINTASTLVD 554 (895)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999887666666654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.2e-14 Score=138.74 Aligned_cols=336 Identities=13% Similarity=0.104 Sum_probs=220.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
.|++++|+++|+.+++..|. ++..+..++..+...++.++|++.++++.+. .|+...+..++..+...++..+|++
T Consensus 115 ~gdyd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPT--NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 35566666666666665555 4455555555555566666666666555554 2333333333333333444444666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH------------------------------------------
Q 036577 164 VLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFT------------------------------------------ 201 (470)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~------------------------------------------ 201 (470)
.++++.+.. +.+...+..+...+.+.|-...|.++..
T Consensus 191 ~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 191 ASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 666665553 3344444555555444443333332222
Q ss_pred ------HHHhc-CCCCCc-chH----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCH
Q 036577 202 ------KLKAF-GCEPNV-ITY----STLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFV 269 (470)
Q Consensus 202 ------~~~~~-g~~~~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 269 (470)
.+... +..|.. ..| .-.+-++...|+..++++.|+.+...+ .+....+-..+.++|...+++
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~------~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG------YKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC------CCCCHHHHHHHHHHHHhcCCc
Confidence 11110 000111 111 112334556677777788888777665 333456778899999999999
Q ss_pred HHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----------CC--CH-hHHHHHH
Q 036577 270 DKAKELFLKMKDEN-----INPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGV-----------QP--NV-VTFNVIM 330 (470)
Q Consensus 270 ~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~--~~-~~~~~l~ 330 (470)
++|..+|+.+.... .+++......|..+|...+++++|..+++.+.+... .| |- ..+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 99999999987643 233444567899999999999999999999987411 12 22 2344567
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q 036577 331 DELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIE 410 (470)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 410 (470)
..+...|+..+|++.++.+....+. |......+.+.+...|.+.+|+..++...... +-+..+....+.++...|+++
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHH
Confidence 7889999999999999999888655 89999999999999999999999997776653 447888888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHH
Q 036577 411 GALSLYSEMLSKGIKPDVVIYNTL 434 (470)
Q Consensus 411 ~A~~~~~~~~~~~~~p~~~~~~~l 434 (470)
+|..+.+.+.+. .|+......|
T Consensus 502 ~A~~~~~~l~~~--~Pe~~~~~~l 523 (822)
T PRK14574 502 QMELLTDDVISR--SPEDIPSQEL 523 (822)
T ss_pred HHHHHHHHHHhh--CCCchhHHHH
Confidence 999999999865 5554433333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-14 Score=137.49 Aligned_cols=368 Identities=11% Similarity=0.093 Sum_probs=244.8
Q ss_pred cccCChhHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCc
Q 036577 82 ITTITPNEAFCIFDYMLNMRPS-PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL--YTYNILINCFCKMGRV 158 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~ 158 (470)
...|++..+..+...+...... +.-...|-.+.+++-..|++++|...|.+..+.. ++. ..+.-+.+.+...|+.
T Consensus 281 yfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dl 358 (1018)
T KOG2002|consen 281 YFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDL 358 (1018)
T ss_pred hhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchH
Confidence 4567999999999988775532 1235568899999999999999999998877663 444 4455688999999999
Q ss_pred chHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 036577 159 SPGFVVLGRILRSCFTPDAVTFNSLIKGLCAES----RIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNL 234 (470)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~ 234 (470)
+.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+..+. .+.|...|-.+...+....-+. ++.+
T Consensus 359 e~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~~~-sL~~ 435 (1018)
T KOG2002|consen 359 EESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDPWA-SLDA 435 (1018)
T ss_pred HHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcChHH-HHHH
Confidence 99999999999873 556777778888887765 567777888777765 3567778888877776554443 3666
Q ss_pred HHHHH----hcCCCCCcccCCCHhhHHHHHHHHHh-CCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCHH--
Q 036577 235 FEEMA----NGNGEIGVVCEPNTVTYTTIIDGLCK-EGFVDKAKELFLKMKDE--NINPNVVTYNSLIHGFCYANDWN-- 305 (470)
Q Consensus 235 ~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~-- 305 (470)
|..+. ..+..++..+.-|..++...+..+.+ .+.++.|......-... |-.+++.+--.+..++-..++.+
T Consensus 436 ~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A 515 (1018)
T KOG2002|consen 436 YGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVA 515 (1018)
T ss_pred HHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHH
Confidence 65544 33333222223355555555544443 23455555553322211 11122222222333333333444
Q ss_pred --------------------------------HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036577 306 --------------------------------EAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG 353 (470)
Q Consensus 306 --------------------------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 353 (470)
+|...+.+..... ..++..+..+...+.....+..|..-|+.+.+.-
T Consensus 516 ~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~ 594 (1018)
T KOG2002|consen 516 EEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT 594 (1018)
T ss_pred HHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh
Confidence 4444444444432 3344444545555555555555555555444331
Q ss_pred -CCCCHhHHHHHHHHHHc------------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 036577 354 -VRPNAFVYNTLMDGFCL------------TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 354 -~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (470)
..+|......|.+.|.. .+..++|.++|.++++.. +.|...-|.+.-+++..|++.+|..+|.+.+
T Consensus 595 ~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVr 673 (1018)
T KOG2002|consen 595 STKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVR 673 (1018)
T ss_pred ccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHH
Confidence 22466666667765542 245788999999988875 5588889999999999999999999999999
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 421 SKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 421 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
+... -...+|-.+.++|..+|++..|+++|+...+.
T Consensus 674 Ea~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 674 EATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8643 35678999999999999999999999998754
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-14 Score=126.49 Aligned_cols=370 Identities=15% Similarity=0.163 Sum_probs=239.5
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPP----VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 153 (470)
|..+++..++..|+++++-.+.+-|. .+ ....+.+...+.+.|+++.|+..|+...+. .|+..+-..|+-++.
T Consensus 244 gni~~kkr~fskaikfyrmaldqvps-ink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f 320 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPS-INKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAF 320 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccc-cchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhe
Confidence 34566677899999999988887665 33 334566666778899999999999988776 577777666777777
Q ss_pred hcCCcchHHHHHHHHHhCCC------------CCCHHHHHHHH-----HHHHhcC--CHHHHHHHHHHHHhcCCCCCcch
Q 036577 154 KMGRVSPGFVVLGRILRSCF------------TPDAVTFNSLI-----KGLCAES--RIMEAAALFTKLKAFGCEPNVIT 214 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~------------~~~~~~~~~l~-----~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~ 214 (470)
..|+-++..+.|.+|+.... .|+....+.-+ +-.-+.+ +-++++-.--++..--+.|+-..
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~ 400 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA 400 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc
Confidence 78888999999998876322 22222222221 1111111 11222211112221111222100
Q ss_pred ---H------------------HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCccc------------------------
Q 036577 215 ---Y------------------STLINGLCRTGHTIVALNLFEEMANGNGEIGVVC------------------------ 249 (470)
Q Consensus 215 ---~------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------------------------ 249 (470)
| ..-...+.+.|+++.|.++++-+...+.......
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 0 0011235677888888888777765542110000
Q ss_pred ------CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 036577 250 ------EPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV 323 (470)
Q Consensus 250 ------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 323 (470)
.-+......-.+.....|++++|.+.|++.+..+-.-....|+ +.-.+-..|+.++|++.|-++...- ..+.
T Consensus 481 ~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~ 558 (840)
T KOG2003|consen 481 IALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNA 558 (840)
T ss_pred HHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhH
Confidence 0011111111112224688899999998888753222222233 2334667889999999988765431 3466
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
..+..+...|....+..+|++++.+.... ++.|+..+..|...|-+.|+-..|.+.+-.--.. ++-+..+...|...|
T Consensus 559 evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayy 636 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYY 636 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHH
Confidence 77778888888889999999998887765 4557888999999999999999888776443222 344888888888888
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 036577 404 CKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF-EIHQVERAFKLFDEMRR 456 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 456 (470)
....-+++|+.+|++.. -+.|+..-|..++..|. +.|++++|.++++...+
T Consensus 637 idtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88889999999999876 46899999988886554 67999999999988865
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-14 Score=130.82 Aligned_cols=284 Identities=13% Similarity=0.107 Sum_probs=164.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHH
Q 036577 120 NKHYDTVLSLFKRLNSTGLFPDLYTY-NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFN--SLIKGLCAESRIMEA 196 (470)
Q Consensus 120 ~~~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a 196 (470)
.|++++|.+.+....+.. +++..+ ........+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555544331 122222 22233335666666666666666553 33332221 224555666666666
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCH------hhHHHHHHHHHhCCCHH
Q 036577 197 AALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNT------VTYTTIIDGLCKEGFVD 270 (470)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~ 270 (470)
...++++.+.. |-+......+...|.+.|++++|.+++..+.+... ..+.. .+|..++.......+.+
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-----~~~~~~~~l~~~a~~~l~~~~~~~~~~~ 246 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-----GDEEHRAMLEQQAWIGLMDQAMADQGSE 246 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 66666665543 23445555566666666666666666666655443 12221 23334444444444555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036577 271 KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMI 350 (470)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 350 (470)
...++++.+... .+.+......+...+...|+.++|..++++..+. +++.... ++.+....++.+++.+..+...
T Consensus 247 ~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 247 GLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHH
Confidence 555666555433 2346666667777777777777777777777664 4444211 2233334577777777777777
Q ss_pred HcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 351 QIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+..+. |...+..+...+.+.|++++|.+.|+...+. .|+...+..+..++.+.|+.++|..++++...
T Consensus 322 k~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 322 KQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66443 5666777777777777777777777777765 46777777777777777777777777776653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-14 Score=131.47 Aligned_cols=121 Identities=4% Similarity=-0.054 Sum_probs=64.4
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCcc
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL--YTYNILINCFCKMGRVS 159 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~ 159 (470)
...|+++.|.+.+....+..|. +...+-....++.+.|+++.|.+.+.+..+.. |+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~--~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE--PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 3455666666666555554433 23333344455555566666666666654432 222 22233355555566666
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFG 207 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 207 (470)
.|.+.++.+.+.. +.+..++..+...+...|++++|.+.+..+.+.+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 6666666665553 3344555556666666666666666666665554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-13 Score=120.05 Aligned_cols=340 Identities=15% Similarity=0.172 Sum_probs=188.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCcchH-HHHHHHHHhCC----------
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM--GRVSPG-FVVLGRILRSC---------- 172 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~a-~~~~~~~~~~~---------- 172 (470)
.+.+=|.|+.. ..+|...++.-+|+.|.+.|++-+...-..|+..-+-. .++--+ .+.|-.|.+.|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34444555543 34667777777777777777666655554444332221 111111 11111111111
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 036577 173 ---------FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (470)
Q Consensus 173 ---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 243 (470)
.+.+..+|..+|.++|+--..+.|.++|++-.....+.+..+||.+|.+-.-.. ..+++.+|....
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqk- 268 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQK- 268 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhh-
Confidence 234556777777777777777777777777766666667777777765533222 256667777666
Q ss_pred CCCcccCCCHhhHHHHHHHHHhCCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHC-
Q 036577 244 EIGVVCEPNTVTYTTIIDGLCKEGFVDK----AKELFLKMKDENINPNVVTYNSLIHGFCYANDWNE-AKCLLIEMMDQ- 317 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~- 317 (470)
..||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.++..+ +..++.+++..
T Consensus 269 -----m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 269 -----MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred -----cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 67777777777777777776554 45566667777777777777777777777666533 33344443321
Q ss_pred ---CC----CCCHhHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------------------------
Q 036577 318 ---GV----QPNVVTFNVIMDELCKNGKMDEASRLLDLM----------------------------------------- 349 (470)
Q Consensus 318 ---~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----------------------------------------- 349 (470)
.+ +.|...|...|..|.+..+.+.|.++..-+
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 223444555556666666655555554433
Q ss_pred -HHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-Ch--------hH-----HHH
Q 036577 350 -IQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNK-EI--------EG-----ALS 414 (470)
Q Consensus 350 -~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~-----A~~ 414 (470)
+-.-.-|+..+...++++....|.++-..++|..++..|...+...-.-++..+++.. .+ .. |..
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad 503 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAAD 503 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 3222334444555555555555666666666666655553333333333333333322 11 00 011
Q ss_pred HH-------HHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036577 415 LY-------SEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 415 ~~-------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (470)
++ .+|... .......+..+-.+.+.|..++|.+++..+.+.+
T Consensus 504 ~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 11 112222 2234455666677889999999999999986543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-13 Score=129.79 Aligned_cols=291 Identities=8% Similarity=-0.055 Sum_probs=190.6
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChH
Q 036577 153 CKMGRVSPGFVVLGRILRSCFTPD-AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVI--TYSTLINGLCRTGHTI 229 (470)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~ 229 (470)
...|+++.|.+.+.+..+.. |+ ...+-.....+...|+.+.|.+.+.+..+.. |+.. ........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 35677888887777766652 33 3334444566777788888888887776542 4432 2333466677788888
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HccCCHH
Q 036577 230 VALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN-SLIHGF---CYANDWN 305 (470)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~---~~~~~~~ 305 (470)
.|...++.+.+.. +.+..++..+...+...|++++|.+.++.+.+.+.. +...+. .-..++ ...+..+
T Consensus 171 ~Al~~l~~l~~~~-------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 171 AARHGVDKLLEMA-------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888887765 456677778888888888888888888888776543 222221 111111 2222333
Q ss_pred HHHHHHHHHHHCCC---CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHH-HHHHHHHHcCCCHHHHHHHH
Q 036577 306 EAKCLLIEMMDQGV---QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVY-NTLMDGFCLTGRVNRAKELF 381 (470)
Q Consensus 306 ~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~ 381 (470)
++.+.+..+.+... +.+...+..++..+...|+.++|.+++++..+..+......+ ..........++.+.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 33334444443321 236777888888888888999999888888886443221111 11112223457778888888
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 382 VSMESNRCMHDV--FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 382 ~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+...+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 323 e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 323 EKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8777653 3355 667788888999999999999999543334578888888888999999999999999888653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.1e-17 Score=143.50 Aligned_cols=262 Identities=16% Similarity=0.122 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHH
Q 036577 182 SLIKGLCAESRIMEAAALFTKLKAFG-CEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTII 260 (470)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (470)
.+...+.+.|++++|++++++..... .+.+...|..+.......++.++|.+.++++...+ +.+...+..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-------~~~~~~~~~l~ 85 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-------KANPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------ccccccccccc
Confidence 45667777788888888885544332 23344555556666667778888888888887665 33555666666
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHHcCCH
Q 036577 261 DGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQG-VQPNVVTFNVIMDELCKNGKM 339 (470)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 339 (470)
.. ...+++++|.++++...+.. ++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred cc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 66 67788888888877765542 455666777777888888888888888866532 245666777777888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 340 DEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
++|...+++.++..+. |......++..+...|+.+++..+++...+.. +.|...+..+..+|...|+.++|+.+|++.
T Consensus 163 ~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 163 DKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc
Confidence 8888888888887543 56777788888888888888777777766543 345567778888888888888888888888
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 420 LSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+.. +.|+.....+..++...|+.++|.++.+++.+
T Consensus 241 ~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 241 LKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred cccc-cccccccccccccccccccccccccccccccc
Confidence 7642 22667777788888888888888888776643
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-13 Score=128.87 Aligned_cols=284 Identities=11% Similarity=0.030 Sum_probs=223.1
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHH--HHHHHHHhcCChHH
Q 036577 154 KMGRVSPGFVVLGRILRSCFTPDAVTFNSL-IKGLCAESRIMEAAALFTKLKAFGCEPNVITYS--TLINGLCRTGHTIV 230 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~g~~~~ 230 (470)
..|++++|.+.+....+.. ++...+..+ .....+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3699999998888766542 223333333 45558999999999999999874 45654333 33668889999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCC
Q 036577 231 ALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV-------VTYNSLIHGFCYAND 303 (470)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~ 303 (470)
|.+.++++.+.. +.++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+
T Consensus 172 Al~~l~~~~~~~-------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 172 ARHGVDKLLEVA-------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred HHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999998876 667889999999999999999999999999987654322 133334444445556
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHH
Q 036577 304 WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVS 383 (470)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (470)
.+...++++...+. .+.++.....+...+...|+.++|..++++..+. .++.... ++.+....++.+++.+..+.
T Consensus 245 ~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 245 SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHH
Confidence 66777777766443 2557788889999999999999999999999885 4455322 33444466999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 384 MESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
..+.. +-|...+..+...+.+.|++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 320 ~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98774 558888999999999999999999999999965 78999999999999999999999999998764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=141.26 Aligned_cols=262 Identities=16% Similarity=0.145 Sum_probs=87.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 112 ILFGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAE 190 (470)
Q Consensus 112 ~l~~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (470)
.+...+.+.|++++|++++++..... .+.+...|..+...+...++++.|.+.++++.+.+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44666667777777777775443332 13344455555556666677777777777776654 2244555556655 567
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHH
Q 036577 191 SRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVD 270 (470)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 270 (470)
+++++|.+++++..+. .++...+..++..+.+.++++++.++++.+..... .+.+...|..+...+.+.|+.+
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-----APDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T--------T-HHHHHHHHHHHHHCCHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCCHH
Confidence 7777777776665443 24555566666667777777777777777654332 2456666777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036577 271 KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMI 350 (470)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 350 (470)
+|++.+++..+.. +.|......++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|...+++..
T Consensus 164 ~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 164 KALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 7777777776652 2245566667777777777777666666665553 3444556666777777777777777777776
Q ss_pred HcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 351 QIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
+..+. |+.....+.+++...|+.++|.++..++.
T Consensus 242 ~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 242 KLNPD-DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHSTT--HHHHHHHHHHHT----------------
T ss_pred ccccc-ccccccccccccccccccccccccccccc
Confidence 65433 66666677777777777777777665543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-13 Score=114.66 Aligned_cols=291 Identities=17% Similarity=0.124 Sum_probs=121.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 036577 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP---DAVTFNSLIKGLCAESRIMEAA 197 (470)
Q Consensus 121 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 197 (470)
++.++|+++|-+|.+.. +.+..+..+|.+.|.+.|..+.|+.+++.+.++.--+ ...+...|.+-|...|-++.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 33444444444444322 2223333344444444444444444444444321000 0112233444444455555555
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHH
Q 036577 198 ALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFL 277 (470)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 277 (470)
.+|..+.+.| .--......|+..|-...+|++|+++-+++...++... -..=...|.-+...+....+.+.|..++.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~--~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY--RVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc--hhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 5555444432 11223344444455555555555555544444432100 00001223344444444455555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 036577 278 KMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN 357 (470)
Q Consensus 278 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 357 (470)
+..+.+. ..+..--.+.+.+...|+++.|.+.++...+++..--..+...+..+|.+.|+.++...++..+.+....++
T Consensus 205 kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 205 KALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 5544321 122222233444555555555555555555553222234445555555555555555555555555432222
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHH
Q 036577 358 AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK---NKEIEGALSLYSEML 420 (470)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 420 (470)
. -..+.+......-.+.|..++.+-+.. .|+...+..+|..-.. .|...+.+.+++.|+
T Consensus 284 ~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 284 A--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred H--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 2 222222222233333444333333322 3555555555554332 233444444555554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-12 Score=119.42 Aligned_cols=353 Identities=12% Similarity=0.054 Sum_probs=264.2
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPG 161 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 161 (470)
.+.+.++-|+.+|..+++..|. +...|...+..--..|..++...+|++.... ++.....|......+...|++..|
T Consensus 527 ~k~~~~~carAVya~alqvfp~--k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQVFPC--KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HhcchHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHH
Confidence 3445567788888888877765 6777877777666778888888888887765 244455566666777777888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036577 162 FVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (470)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 241 (470)
..++..+.+.. +.+...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+...--.+..++|++++++..+.
T Consensus 604 r~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 604 RVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 88888887764 446778888888888888888888888887764 477777777666666678888888888888776
Q ss_pred CCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 036577 242 NGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQP 321 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 321 (470)
. +.-...|..+...+-+.++.+.|.+.|..-.+. ++-..-.|-.+...=-+.|.+-.|..+++.....+ +.
T Consensus 681 f-------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk 751 (913)
T KOG0495|consen 681 F-------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PK 751 (913)
T ss_pred C-------CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CC
Confidence 5 444566777778888888888888877665543 34455567777777777788888888888887665 66
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036577 322 NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILIN 401 (470)
Q Consensus 322 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (470)
+...|-..|..-.+.|+.++|..+..+..+.- +.+...|..-|....+.++-....+.+++ +.-|....-.+..
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~ 825 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAK 825 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHH
Confidence 77788888888888888888888888887763 33667777777776666664444444332 2447778888889
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 402 GYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+....++++|.+.|.+.++.+.. +-.+|..+...+.++|.-+.-.+++++...
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 999999999999999999976432 456899899999999998888899888875
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.6e-13 Score=126.60 Aligned_cols=332 Identities=13% Similarity=0.094 Sum_probs=258.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 112 ILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAES 191 (470)
Q Consensus 112 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (470)
..+..+...|++++|.+++.+.++.. +.+...|..|...|-+.|+.+++...+-.+.... +.|...|..+.....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 33444455699999999999999986 6788899999999999999999988776655443 557799999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHh----hHHHHHHHHHhCC
Q 036577 192 RIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTV----TYTTIIDGLCKEG 267 (470)
Q Consensus 192 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g 267 (470)
.++.|.-.|.+..+.. +++...+-.-...|-+.|+...|...|.++.+..+ +.|.. .....++.+...+
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p------~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP------PVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC------chhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999864 34555555567788999999999999999988762 22222 2334456677788
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC---------------------------
Q 036577 268 FVDKAKELFLKMKDE-NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGV--------------------------- 319 (470)
Q Consensus 268 ~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------------------------- 319 (470)
+.+.|.+.++..... +-..+...++.++..|.+...++.+......+.....
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 889999999887763 2234566788899999999999999998888766211
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036577 320 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG--VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYS 397 (470)
Q Consensus 320 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (470)
.++... -.++-++......+....+.......+ +.-+...|.-+.+++...|++.+|..+|..+.....--+...|-
T Consensus 375 s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 375 SYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred Cccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 222222 123344555556666666666666665 44456788999999999999999999999998875555788999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 398 ILINGYCKNKEIEGALSLYSEMLSKGIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
.+..+|...|.+++|.+.|+..+.. .|+ ...-.+|...+.+.|+.++|.+.++.+.
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999965 443 4466678888999999999999999876
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.3e-13 Score=117.09 Aligned_cols=373 Identities=14% Similarity=0.099 Sum_probs=259.9
Q ss_pred HHHHHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHH
Q 036577 68 KFLRERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTYN 146 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~ 146 (470)
.-.+..++..|..+...|++++|++.+.+++...|. .+.-|.....+|...|+|+++++.--+.++.+ |+ ...+.
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~ 187 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD--EPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALL 187 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC--CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHH
Confidence 334556788888999999999999999999998876 36778999999999999999999888887763 43 34566
Q ss_pred HHHHHHHhcCCcchHHHH------------------HHHHH------------h-CC--CCCCHHHHHHHHHHHHh----
Q 036577 147 ILINCFCKMGRVSPGFVV------------------LGRIL------------R-SC--FTPDAVTFNSLIKGLCA---- 189 (470)
Q Consensus 147 ~li~~~~~~g~~~~a~~~------------------~~~~~------------~-~~--~~~~~~~~~~l~~~~~~---- 189 (470)
.-..++-..|++++|+.= .++.+ + .+ +-|+....++....+..
T Consensus 188 RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 188 RRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred HHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 666666677776665431 11111 1 11 22343333333332210
Q ss_pred ---------------------cC---CHHHHHHHHHHHHh---cCCCCC---------cchHHHHHHHHHhcCChHHHHH
Q 036577 190 ---------------------ES---RIMEAAALFTKLKA---FGCEPN---------VITYSTLINGLCRTGHTIVALN 233 (470)
Q Consensus 190 ---------------------~g---~~~~a~~~~~~~~~---~g~~~~---------~~~~~~l~~~~~~~g~~~~a~~ 233 (470)
.+ .+..|...+.+-.. .....+ ..+.......+.-.|+...|.+
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 00 12222222221110 000111 1111112222345688889999
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIE 313 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (470)
-|+..+... +.+...|--+..+|....+.++..+.|++..+.+ +.+..+|.--.+.+.-.+++++|..=|++
T Consensus 348 d~~~~I~l~-------~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 348 DFDAAIKLD-------PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred hHHHHHhcC-------cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 999998876 3344448888889999999999999999998875 33667777777778888999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC---
Q 036577 314 MMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCM--- 390 (470)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 390 (470)
.+... +.+...|..+..+..+.+++++++..|++.++. ++--+..|+.....+..++++++|.+.|+..++....
T Consensus 420 ai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 420 AISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred HhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 98875 445667777777778899999999999999987 3446789999999999999999999999998775311
Q ss_pred --CCHH--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 391 --HDVF--SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 391 --~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+.. +.-.++..-. .+++..|++++++.++.+.+ ....|..|...-.+.|+.++|+++|++...
T Consensus 498 ~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 1222222222 38999999999999976443 456888999999999999999999998753
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-12 Score=115.06 Aligned_cols=294 Identities=10% Similarity=0.041 Sum_probs=206.0
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHhcC
Q 036577 149 INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCE--PNVITYSTLINGLCRTG 226 (470)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g 226 (470)
..++....+.+++.+-.+.....|++.+...-+....+.-...++++|+.+|+++.+...- -|..+|..++-. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 3455555667777777777777777766666666666677778888888888888765210 134555555433 222
Q ss_pred ChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 036577 227 HTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNE 306 (470)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 306 (470)
+-. .--+-+...+.+ +--+.|...+.+-|+-.++.++|...|+...+.+ +.....|+.+..-|....+...
T Consensus 312 ~sk-Ls~LA~~v~~id-------KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 312 KSK-LSYLAQNVSNID-------KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred hHH-HHHHHHHHHHhc-------cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHH
Confidence 111 111112222222 3344567777788888888899999998888764 2356778888888888888899
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 307 AKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
|+.-++..++.+ +.|-..|..+.++|.-.+...-|+-.|++..+..+. |...|.+|+++|.+.++.++|++.|.+...
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999998888876 668888888999999888888888888888887544 788899999999999999999999988887
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 387 NRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIKPD--VVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 387 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+ ..+...+..+...|-+.++.++|...|++-++. |...+ .....-|..-+.+.+++++|..+......
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 76 335578888888899999999988888876652 32222 11222245566677888777766555443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-12 Score=113.06 Aligned_cols=364 Identities=14% Similarity=0.140 Sum_probs=249.5
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPG 161 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 161 (470)
.+.+++..|..+|+.++..+.. +...|-..+..-.+++....|..++++....- +.-...|-..+.+=-..|++.-|
T Consensus 84 esq~e~~RARSv~ERALdvd~r--~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYR--NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHH
Confidence 3456788999999999987755 88899999999999999999999999988762 22334566666666778999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036577 162 FVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (470)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 241 (470)
.++|++-.+- .|+...|++.|+.=.+.+.++.|..+|++..- +.|++.+|.-....-.+.|....|..+|+.+.+.
T Consensus 161 RqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 161 RQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 9999998874 89999999999999999999999999999875 3588888887777777888888888887777654
Q ss_pred CCCC-----------------------------------------------------C---------------------c
Q 036577 242 NGEI-----------------------------------------------------G---------------------V 247 (470)
Q Consensus 242 ~~~~-----------------------------------------------------~---------------------~ 247 (470)
-++- | .
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 3210 0 0
Q ss_pred ccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHH---HccCCHHHHHHHHHHHHHC
Q 036577 248 VCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV-------VTYNSLIHGF---CYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~---~~~~~~~~a~~~~~~~~~~ 317 (470)
..+-|-.+|-..++.-...|+.+...++|+..... ++|-. .+|.-+-.++ ....|.+.+.++++..++.
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 01111122222233333334444444444444332 12110 0000000000 1233444444444444432
Q ss_pred CCCCCHhHHHHH----HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 036577 318 GVQPNVVTFNVI----MDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDV 393 (470)
Q Consensus 318 ~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 393 (470)
++....||..+ ...-.++.++..|.+++...+ |.-|-..+|...|..-.+.++++.+..+++..++.+ +-|.
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c 471 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENC 471 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhh
Confidence 12222333322 222234566667777776665 446777888888888888999999999999999875 4488
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 394 FSYSILINGYCKNKEIEGALSLYSEMLSKG-IKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
.+|......-...|+.|.|..+|+-+++.. +......|...|+--...|.++.|..+++++.+.
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 899988888889999999999999998763 2334567888888888999999999999999874
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-12 Score=115.36 Aligned_cols=357 Identities=15% Similarity=0.112 Sum_probs=247.3
Q ss_pred HHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------
Q 036577 71 RERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD--------- 141 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~--------- 141 (470)
...+.+.|...++.|+++.|+.-|+.+.+..|. -...+|.++ ++..-|+-++..+.|.+|......+|
T Consensus 276 ikil~nigvtfiq~gqy~dainsfdh~m~~~pn--~~a~~nl~i-~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~d 352 (840)
T KOG2003|consen 276 IKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN--FIAALNLII-CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKD 352 (840)
T ss_pred HHHHhhcCeeEEecccchhhHhhHHHHHHhCcc--HHhhhhhhh-hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcC
Confidence 345678888899999999999999999988764 344555554 44557888999999999877532332
Q ss_pred ---HHHHHHHHH-----HHHhcC--CcchHHHHHHHHHhCCCCCCHH-------------HH--------HHHHHHHHhc
Q 036577 142 ---LYTYNILIN-----CFCKMG--RVSPGFVVLGRILRSCFTPDAV-------------TF--------NSLIKGLCAE 190 (470)
Q Consensus 142 ---~~~~~~li~-----~~~~~g--~~~~a~~~~~~~~~~~~~~~~~-------------~~--------~~l~~~~~~~ 190 (470)
....+..+. -.-+.+ +.++++-.-.+++.--+.|+-. .+ -.-...|.++
T Consensus 353 dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 353 DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 222222221 111111 1122221112222111122210 00 0123467889
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHH------------------------------------HHHhcCChHHHHHH
Q 036577 191 SRIMEAAALFTKLKAFGCEPNVITYSTLIN------------------------------------GLCRTGHTIVALNL 234 (470)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~------------------------------------~~~~~g~~~~a~~~ 234 (470)
|+++.|+++++-+.+..-+.....-+.|.. .....|++++|.+.
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHH
Confidence 999999998887765421111111111100 01236789999999
Q ss_pred HHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036577 235 FEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEM 314 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (470)
|++....+ ..-+.....+.-.+-..|+.++|++.|-++..- +..+..+...+...|....+..+|++++.+.
T Consensus 513 ykeal~nd-------asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 513 YKEALNND-------ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHcCc-------hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99998765 233344444555677899999999999877653 2347778888899999999999999999776
Q ss_pred HHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 036577 315 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVF 394 (470)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 394 (470)
... ++.|+..+..+...|-+.|+-.+|.+.+-+-.+. ++-+..+...|...|....-+++++.+|++..- +.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 544 4778899999999999999999999988776655 345788888899999999999999999998754 479999
Q ss_pred HHHHHHHHH-HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 036577 395 SYSILINGY-CKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQ 443 (470)
Q Consensus 395 ~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 443 (470)
-|..++..| .+.|++++|+++++....+ ++-|.....-|++.+...|.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 999887655 5689999999999998875 56688888888888887774
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-13 Score=126.50 Aligned_cols=200 Identities=11% Similarity=0.027 Sum_probs=97.4
Q ss_pred CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIM 330 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 330 (470)
-.+.+|..+.++|..+++.+.|++.|++..+.+ +-...+|+.+..=+.....+|.|...|+..+... +-+-..|.-+.
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG 496 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLG 496 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhh
Confidence 344555555555555555555555555555432 1134455555444555555555555555544321 11122233344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q 036577 331 DELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIE 410 (470)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 410 (470)
..|.+.++++.|+-.|+.+.+.++. +.+....+...+-+.|+.++|++++++....+ +.|+..--..+..+...++++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchH
Confidence 4555555555555555555555443 44444555555555555555555555554443 123333333444444555555
Q ss_pred HHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 411 GALSLYSEMLSKGIKP-DVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 411 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+|+..++++.+. .| +...+..+...|.+.|+.+.|+.-|--+.+
T Consensus 575 eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 575 EALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 555555555542 22 233444444555555555555555555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-12 Score=110.54 Aligned_cols=290 Identities=10% Similarity=0.043 Sum_probs=132.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036577 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALF 200 (470)
Q Consensus 121 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 200 (470)
|+|.+|..+..+-.+.+ ......|..-..+.-+.|+.+.+-.++.++.+..-.++..++-+..+.....|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44444444444433333 11122333333444444444444444444444322333334444444444444444444444
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcc-cCCCHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 036577 201 TKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVV-CEPNTVTYTTIIDGLCKEGFVDKAKELFLKM 279 (470)
Q Consensus 201 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 279 (470)
+++.+.+ +.+.........+|.+.|++.+...++..+.+.+--.... ..-...+|..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 4444332 2233344444444444444444444444444333210000 0112234444444444444444444444444
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHh
Q 036577 280 KDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAF 359 (470)
Q Consensus 280 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 359 (470)
..+ .+-++..-..++.-+.++|+.++|.++..+..+++..|... ..-.+.+-++.+.-.+..+.-.+.... ++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE-DPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC-Chh
Confidence 332 22234444455555556666666666665555554333311 111233445555555555444443222 345
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 036577 360 VYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (470)
.+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+.++|.++.++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5556666666666666666666655443 3556666666666666666666666655544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-13 Score=126.64 Aligned_cols=290 Identities=14% Similarity=0.077 Sum_probs=230.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036577 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC--FTPDAVTFNSLIKGLCAESRIMEAAAL 199 (470)
Q Consensus 122 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 199 (470)
+.++|+.+|+++... +.....+...+..+|...+++++|.++|+.+.+.. ...+..+|.+.+-.+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 677899999995443 45566778889999999999999999999998752 12367778777765533 222223
Q ss_pred H-HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHH
Q 036577 200 F-TKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLK 278 (470)
Q Consensus 200 ~-~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 278 (470)
+ +.+.+. -+-.+.+|.++..+|.-+++.+.|++.|++..+.+ +....+|+.+..-+....++|.|...|+.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-------p~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-------PRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-------CccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 2 223332 23468899999999999999999999999999876 45889999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 036577 279 MKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA 358 (470)
Q Consensus 279 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 358 (470)
.+.... -+-..|..+...|.+.++++.|+-.|+++.+.+ +.+.+....+...+.+.|+.++|+++++++...+.+ |+
T Consensus 481 Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~ 557 (638)
T KOG1126|consen 481 ALGVDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NP 557 (638)
T ss_pred hhcCCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cc
Confidence 887521 133445556778999999999999999999886 667788888899999999999999999999988766 44
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV 428 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 428 (470)
-.--.-+..+...++.++|...++++.+. ++.+...|..+...|-+.|+.+.|+.-|.-+.+.+.+++.
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 44334556677789999999999999885 2447778889999999999999999999999876555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-12 Score=106.85 Aligned_cols=287 Identities=12% Similarity=0.099 Sum_probs=227.4
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc------hHHHHHHHHHhcCCh
Q 036577 155 MGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVI------TYSTLINGLCRTGHT 228 (470)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~------~~~~l~~~~~~~g~~ 228 (470)
.++.++|.+.|-+|.+.. +.+..+--+|.+.|-+.|.++.|+++.+.+.+. ||.. +...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 468899999999999853 445666778999999999999999999999875 5533 345567778899999
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCCH
Q 036577 229 IVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV----VTYNSLIHGFCYANDW 304 (470)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~ 304 (470)
+.|+.+|..+.+.+ .--......|+..|-...+|++|+++-+++...+-.+.. .-|.-+...+....+.
T Consensus 124 DRAE~~f~~L~de~-------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 124 DRAEDIFNQLVDEG-------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred hHHHHHHHHHhcch-------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 99999999998765 344567888999999999999999999988887544332 3456666777778899
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 036577 305 NEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSM 384 (470)
Q Consensus 305 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (470)
+.|..++.+..+.+ +..+..-..+.......|+++.|.+.++.+.+.++.--..+...|..+|.+.|+.++....+.++
T Consensus 197 d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 197 DRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999998874 34444555667789999999999999999999977666788899999999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 036577 385 ESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE---IHQVERAFKLFDEMRRD 457 (470)
Q Consensus 385 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~ 457 (470)
.+.. ++...-..+.+.-....-.+.|...+.+-+.+ +|+...+..|+..-.. .|..++-...++.|...
T Consensus 276 ~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 276 METN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 8864 34444455555555566677777777666654 7999999999877654 35577777888888744
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.4e-12 Score=108.40 Aligned_cols=293 Identities=12% Similarity=0.027 Sum_probs=234.8
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 036577 154 KMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALN 233 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~ 233 (470)
..|++.+|.+...+-.+.+ +.....|..-+++.-..|+.+.+-.++.+.-+.--.++....-+........|+...|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4689999999999987776 334455666677788899999999999999875334455666677788889999999999
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCCHHH
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV-------VTYNSLIHGFCYANDWNE 306 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~ 306 (470)
-++++.+.. +-++.......++|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.
T Consensus 175 ~v~~ll~~~-------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 175 NVDQLLEMT-------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred HHHHHHHhC-------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 999998876 678889999999999999999999999999998765554 456777776666666666
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 307 AKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
-...|+..... ...++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ... .-.+.+-++.+.-++..+.-.+
T Consensus 248 L~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 248 LKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHH
Confidence 66666665443 245667777888899999999999999999999877665 222 2345677888887777776665
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 036577 387 NRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAAD 462 (470)
Q Consensus 387 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 462 (470)
.. +.++..+.+|...|.+.+.|.+|.+.|+..++. .|+..+|+.+.+++.+.|+..+|.+..++....-..|+
T Consensus 323 ~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 323 QH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 43 446688999999999999999999999988854 89999999999999999999999999998875444444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-10 Score=107.00 Aligned_cols=357 Identities=12% Similarity=0.034 Sum_probs=279.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKR----LNSTGLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
...++.|.++++.+.+.-|. +..+|-+-...--.+|+.+....+..+ +...|+.-+...|..=...|-..|..-
T Consensus 419 LetYenAkkvLNkaRe~ipt--d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 419 LETYENAKKVLNKAREIIPT--DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChh
Confidence 34567777777777776665 677777766666777877777777665 344577777777777777777778887
Q ss_pred hHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 036577 160 PGFVVLGRILRSCFTP--DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEE 237 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 237 (470)
.+..+....+..|+.. -..+|+.-...|.+.+.++-|..+|...... .+.+...|......--..|..++...++++
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 7777777777766543 2457777788888888888888888887764 344566777777666677888888889998
Q ss_pred HHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 238 MANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
+...- +.....|......+-..|+...|..++..+.+... .+...|-.-+..-..+..++.|..+|.+....
T Consensus 576 av~~~-------pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 576 AVEQC-------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHhC-------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 88764 55667777778888889999999999999888743 37788888888889999999999999888775
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036577 318 GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYS 397 (470)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (470)
.|+...|.--+...--.++.++|.+++++.++. ++.-...|..+.+.+-..++.+.|...|..-.+. ++-.+..|-
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWl 723 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWL 723 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHH
Confidence 667777777777777788999999999998886 2223567888889999999999999888765544 355677888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 398 ILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+...--+.|.+-.|..++++.+-++.+ +...|-..|..-.+.|+.+.|..+.-+..+
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888899999999999999877654 778899999999999999999888877764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.3e-11 Score=105.74 Aligned_cols=329 Identities=11% Similarity=0.046 Sum_probs=237.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-H-HHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD-A-VTFNSL 183 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~l 183 (470)
|...+-.....+.+.|....|++.|......- +-.-..|..|...+. + .+........ .+.| . ..--.+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~----~e~~~~l~~~-l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---D----IEILSILVVG-LPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---h----HHHHHHHHhc-CcccchHHHHHHH
Confidence 44344444445566777788888887766542 333334444433321 1 1222222222 2222 1 111224
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHH
Q 036577 184 IKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGL 263 (470)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 263 (470)
..++....+.+++.+=.+.+...|.+-+...-+....+.....|+++|+.+|+++..+++= --.|..+|+.++..-
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPY----Rl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPY----RLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC----cchhHHHHhHHHHHH
Confidence 4566666788888888888888887665555555566677788999999999999887531 123667777776544
Q ss_pred HhCCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHH
Q 036577 264 CKEGFVD-KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 342 (470)
Q Consensus 264 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 342 (470)
....... -|..+++ + ... -+.|...+.+.|.-.++.++|...|+...+.+ +.....|+.+..-|....+...|
T Consensus 310 ~~~skLs~LA~~v~~-i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVSN-I--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred hhhHHHHHHHHHHHH-h--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 3322221 1222221 1 122 34577778888999999999999999999886 55667889899999999999999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 343 SRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
++-++.+++.++. |-..|-.|+++|.-.+...-|.-+|++..... +.|...|.+|..+|.+.++.++|++.|+.....
T Consensus 384 i~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999998765 89999999999999999999999999998863 449999999999999999999999999999986
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 423 GIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 423 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
|-. +...+..|...+-+.++..+|.++|++-++
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 533 667899999999999999999999988875
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-11 Score=110.01 Aligned_cols=375 Identities=12% Similarity=0.031 Sum_probs=219.7
Q ss_pred cCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 036577 76 SSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCK 154 (470)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~ 154 (470)
-.|..+....+.++|..-|...+..+.. .-..+..++....-. .++-+.+++.+.-. -...+......+.....-
T Consensus 146 lRgk~y~al~n~~~ar~~Y~~Al~~D~~--c~Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~ 221 (611)
T KOG1173|consen 146 LRGKVYVALDNREEARDKYKEALLADAK--CFEAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEILYELKLC 221 (611)
T ss_pred eeeehhhhhccHHHHHHHHHHHHhcchh--hHHHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhh
Confidence 3445566667788888888888775443 344444444333211 11223333221000 011222222222222111
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 036577 155 MGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNL 234 (470)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~ 234 (470)
...-+.....-++..-.+...+........+-+...+++.+..++.+.+.+. .++....+..-|.++...|+..+-..+
T Consensus 222 k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~l 300 (611)
T KOG1173|consen 222 KNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLL 300 (611)
T ss_pred hhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHH
Confidence 1110111111110111122345555555666666777788888877777764 355666666666777777777777777
Q ss_pred HHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036577 235 FEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEM 314 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (470)
=.++.... |..+.+|-++.-.|...|+.++|++.|.+....+. .-...|-.+...|.-.|..++|+..+...
T Consensus 301 sh~LV~~y-------P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tA 372 (611)
T KOG1173|consen 301 SHKLVDLY-------PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTA 372 (611)
T ss_pred HHHHHHhC-------CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHH
Confidence 77776665 55667777777777777888888888777655421 12345667777777777777777777666
Q ss_pred HHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC----C--
Q 036577 315 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN----R-- 388 (470)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-- 388 (470)
-+.- +-...-+--+..-|.+.++.+.|.++|.+.....+. |+..++-+.-.....+.+.+|..+|+..... +
T Consensus 373 arl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e 450 (611)
T KOG1173|consen 373 ARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE 450 (611)
T ss_pred HHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc
Confidence 5431 111111222344566777777888888777766433 6677777777666777777777777665521 0
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhhhc
Q 036577 389 CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRT 468 (470)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 468 (470)
......+++.|.++|.+.+++++|+..+++.+....+ +..++.++.-.|...|+++.|.+.|.+..- +.||..+-+.
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~ 527 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISE 527 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHH
Confidence 0113445677777778888888888888777765333 666777777777777888888887777765 6676655443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-10 Score=100.78 Aligned_cols=185 Identities=15% Similarity=0.209 Sum_probs=145.1
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 036577 265 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF----CYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMD 340 (470)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 340 (470)
...+.+.+.++|+...+. ++....||.-+--+| .++.+...|.+++...+. ..|...+|...|..-.+.++++
T Consensus 378 e~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHH
Confidence 467899999999999884 555666666554444 467899999999988764 4888899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 341 EASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR-CMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
.+..++++.++-++. +..+|......-...|+.+.|..+|...++.. .......|-+.|+.-...|.++.|..+++++
T Consensus 455 RcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 999999999998765 88899988888889999999999999988753 2224566777787778899999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 036577 420 LSKGIKPDVVIYNTLFIGLF-----EIH-----------QVERAFKLFDEMR 455 (470)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 455 (470)
++. .+-...|.+...--. ..| ....|.++|++..
T Consensus 534 L~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 534 LDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 976 333446655543322 334 5667888888775
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.6e-12 Score=123.45 Aligned_cols=251 Identities=13% Similarity=0.065 Sum_probs=157.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------CCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM---------GRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAES 191 (470)
Q Consensus 121 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (470)
+++++|+++|++..+.. +.+...|..+..++... +++++|...+++.++.. +.+..++..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 45677888888877764 33455565555544322 33677888888877764 446677777777777888
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHH
Q 036577 192 RIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDK 271 (470)
Q Consensus 192 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 271 (470)
++++|...|++..+.+ +.+...+..+...+...|++++|+..+++..+.+ +.+...+..++..+...|++++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-------P~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-------PTRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCChhhHHHHHHHHHhccCHHH
Confidence 8888888888877754 3345567777777888888888888888887765 2233333344445666778888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036577 272 AKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ 351 (470)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 351 (470)
|...++++.....+-+...+..+..++...|++++|...+.++.... +.+....+.+...|...| +.|...++.+.+
T Consensus 425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 88888777654322244556667777778888888888887765542 223334455555666666 366666666554
Q ss_pred cC-CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 352 IG-VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 352 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
.. ..+....+ +...+.-.|+-+.+... +++.+.
T Consensus 502 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 502 SEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 31 11221222 33334445666665544 666654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-11 Score=118.33 Aligned_cols=268 Identities=12% Similarity=0.044 Sum_probs=193.1
Q ss_pred CCCHHHHHHHHHHHHh-----cCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 036577 139 FPDLYTYNILINCFCK-----MGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCA---------ESRIMEAAALFTKLK 204 (470)
Q Consensus 139 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 204 (470)
..+...|...+.+... .++.++|.+.|++.++.. +.+...|..+..+|.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4455555555554322 134678999999999863 3356667666665542 345899999999999
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 036577 205 AFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI 284 (470)
Q Consensus 205 ~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 284 (470)
+.. +.+...+..+...+...|++++|...|+++.+.+ +.+...+..+..++...|++++|...+++..+...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-------PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP 403 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 864 3467778888888999999999999999999876 56778889999999999999999999999988743
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 036577 285 NPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTL 364 (470)
Q Consensus 285 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 364 (470)
. +...+..++..+...|++++|...+++..+...+.+...+..+..++...|+.++|...+.++...... +....+.+
T Consensus 404 ~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l 481 (553)
T PRK12370 404 T-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLL 481 (553)
T ss_pred C-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHH
Confidence 2 233334445556778999999999999887642334556777888899999999999999998765322 34455666
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 365 MDGFCLTGRVNRAKELFVSMESNR-CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
...|...| ++|...++.+.+.. ..+....+ +-..|.-.|+.+.+..+ +++.+.
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 66777777 47877777765531 11221222 44456667887777777 888765
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-11 Score=105.38 Aligned_cols=200 Identities=10% Similarity=0.000 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35566677777777777777777777776653 4445666667777777777777777777776653 334556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHH
Q 036577 186 GLCAESRIMEAAALFTKLKAFGC-EPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC 264 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (470)
.+...|++++|.+.+++...... +.....+..+...+...|++++|.+.+++..... +.+...+..+...+.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-------PQRPESLLELAELYY 180 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCChHHHHHHHHHHH
Confidence 77777777777777777665321 1123345555566666666666666666666543 334455556666666
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036577 265 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMM 315 (470)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (470)
..|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 181 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666666665554 22344444455555556666666666555544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.1e-11 Score=102.95 Aligned_cols=202 Identities=13% Similarity=0.053 Sum_probs=170.8
Q ss_pred CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIM 330 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 330 (470)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 346678888999999999999999999988763 3457788889999999999999999999998875 45667788889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 036577 331 DELCKNGKMDEASRLLDLMIQIGVR-PNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEI 409 (470)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (470)
..+...|++++|...++.+.+.... .....+..+...+...|++++|...+++..... +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 9999999999999999999875322 234567778889999999999999999998764 34677888999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 410 EGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999876 344566777788888899999999999888765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.4e-12 Score=106.01 Aligned_cols=233 Identities=12% Similarity=0.007 Sum_probs=200.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 036577 216 STLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLI 295 (470)
Q Consensus 216 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 295 (470)
+-+..+|.+.|.+.+|.+-++...... |-+.||..|-.+|.+..+.+.|+.++.+-.+. .+.++.....+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--------~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhH
Confidence 567899999999999999999988754 66778999999999999999999999998876 344555556677
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHH
Q 036577 296 HGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVN 375 (470)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 375 (470)
+.+...++.++|.++++...+.. +.++.....+...|.-.++++.|+..++++.+.|+. ++..|+.+.-+|.-.+++|
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 88889999999999999998875 667778888888999999999999999999999988 8999999999999999999
Q ss_pred HHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 036577 376 RAKELFVSMESNRCMH--DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDE 453 (470)
Q Consensus 376 ~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (470)
-+..-|++....--.| -...|-.+.......|++.-|.+.|+-.+..+.. ....++.|...-.+.|+.++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 9999999987754333 4567888888889999999999999998876433 567899999888999999999999999
Q ss_pred HHHcCCCCC
Q 036577 454 MRRDGVAAD 462 (470)
Q Consensus 454 m~~~g~~p~ 462 (470)
... +.|+
T Consensus 455 A~s--~~P~ 461 (478)
T KOG1129|consen 455 AKS--VMPD 461 (478)
T ss_pred hhh--hCcc
Confidence 887 4554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-10 Score=105.64 Aligned_cols=290 Identities=14% Similarity=0.113 Sum_probs=164.4
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHH-HHHHHHh-----
Q 036577 151 CFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYST-LINGLCR----- 224 (470)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~~----- 224 (470)
.+...|++++|++.++.-.+. +.............+.+.|+.++|..+|..+.+.+ |+...|.. +..+..-
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 344555555555555443322 22233444455555555566666666666555543 33333322 2222211
Q ss_pred cCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 036577 225 TGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFV-DKAKELFLKMKDENINPNVVTYNSLIHGFCYAND 303 (470)
Q Consensus 225 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 303 (470)
..+.+...++|+++.... |.......+.-.+.....+ ..+...+..+..+|++ .+|+.+-..|.....
T Consensus 90 ~~~~~~~~~~y~~l~~~y--------p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--------PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred cccHHHHHHHHHHHHHhC--------ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 123455566666655443 1111111111111111112 2334444555556643 245555555554444
Q ss_pred HHHHHHHHHHHHHC--------------CCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 036577 304 WNEAKCLLIEMMDQ--------------GVQPNV--VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG 367 (470)
Q Consensus 304 ~~~a~~~~~~~~~~--------------~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (470)
.+-...++...... .-+|.. .++..+...|...|++++|+..++..+++.+. .+..|..-.+.
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 44444444444321 113333 34456677788888888888888888887433 36778888888
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh------HHH--HHHHHHH
Q 036577 368 FCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV------IYN--TLFIGLF 439 (470)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~--~l~~~~~ 439 (470)
+-+.|++.+|.+.++.....+ .-|...-+-.+..+.++|++++|.+++......+..|-.. .|. ....+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887765 3477777777888888888888888888887665433221 232 2357788
Q ss_pred hcCCHHHHHHHHHHHHH
Q 036577 440 EIHQVERAFKLFDEMRR 456 (470)
Q Consensus 440 ~~g~~~~A~~~~~~m~~ 456 (470)
+.|++..|++.|..+.+
T Consensus 317 r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 88888888888777754
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-10 Score=104.55 Aligned_cols=287 Identities=11% Similarity=0.042 Sum_probs=228.7
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHH
Q 036577 139 FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTL 218 (470)
Q Consensus 139 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 218 (470)
..+........+-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-.-+=.++.+. .|-.+.+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 4566677777788888999999999999998864 566667777777888999988888887888775 45678899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 219 INGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF 298 (470)
Q Consensus 219 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 298 (470)
.--|...|+..+|.+.|.+....+ +.-...|-.+...|+-.|..++|+..+...-+. ++-...-+--+.--|
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEY 390 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHH
Confidence 999999999999999999998876 444568899999999999999999998877654 111111222344457
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-C-CCHhHHHHHHHHHHcCC
Q 036577 299 CYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI----GV-R-PNAFVYNTLMDGFCLTG 372 (470)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~-~~~~~~~~l~~~~~~~g 372 (470)
.+.+..+-|.+.|.+..... |.|+..++-+.-.....+.+.+|..+|+..+.. +. . -...+++.|+.+|.+.+
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 78899999999999888765 667888888888778888999999999887632 11 1 13456889999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 036577 373 RVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF 439 (470)
Q Consensus 373 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (470)
.+++|+..++..+... +.+..++.++.-.|...|+++.|++.|.+.+ .+.|+..+...++..+.
T Consensus 470 ~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred hHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 9999999999988864 5589999999999999999999999999998 66888876666665443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-11 Score=103.09 Aligned_cols=229 Identities=16% Similarity=0.025 Sum_probs=125.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHH
Q 036577 181 NSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTII 260 (470)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (470)
+.+.++|.+.|.+.+|.+.++.-.+. .|-+.||..|..+|.+..+.+.|+.++.+-.+.. +-++.......
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-------P~~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-------PFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-------CchhhhhhhhH
Confidence 44555566666666666555555443 3455555555556666666666666655554432 33333334445
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 036577 261 DGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMD 340 (470)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 340 (470)
+.+...++.++|.++|+...+.. +.++.....+...|.-.++++-|+..++++.+.|+ -++..|+.+.-+|.-.++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchh
Confidence 55555556666666665555442 22444444455555555666666666666666552 34555555555666666666
Q ss_pred HHHHHHHHHHHcCCCCC--HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 036577 341 EASRLLDLMIQIGVRPN--AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSE 418 (470)
Q Consensus 341 ~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 418 (470)
-++.-|.+....--.|+ ..+|-.+.......||+..|.+.|+.....+ ..+...++.|.-.-.+.|++++|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 66666655554422222 2345555555556666666666666555543 33555566666666666666666666665
Q ss_pred HHH
Q 036577 419 MLS 421 (470)
Q Consensus 419 ~~~ 421 (470)
...
T Consensus 455 A~s 457 (478)
T KOG1129|consen 455 AKS 457 (478)
T ss_pred hhh
Confidence 553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-10 Score=108.50 Aligned_cols=245 Identities=18% Similarity=0.132 Sum_probs=181.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhH-HHHHHHHHhCCCHHHHHHHHHHHHhC-----C-
Q 036577 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTY-TTIIDGLCKEGFVDKAKELFLKMKDE-----N- 283 (470)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~-----~- 283 (470)
-..+...+...|...|++++|..+++...+.-........|...+. +.+...|...+++++|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456667888999999999999999988776100000023444443 44778899999999999999998652 2
Q ss_pred -CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CC-CCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 036577 284 -INPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ-----GV-QPNV-VTFNVIMDELCKNGKMDEASRLLDLMIQI--- 352 (470)
Q Consensus 284 -~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 352 (470)
.+.-..+++.|..+|.+.|++++|...++...+. +. .|.+ ..++.+...+...+++++|..++....+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1223456788888999999999999888876542 11 2222 34667778899999999999999876553
Q ss_pred CCCC----CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 353 GVRP----NAFVYNTLMDGFCLTGRVNRAKELFVSMESNR-------CMHDVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 353 ~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
-+.+ -..+++.|...|.+.|++++|+++++.++... ..-....++.+...|.+.+++++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1112 24679999999999999999999999886531 112356678899999999999999999987653
Q ss_pred ----CCC-CCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 422 ----KGI-KPD-VVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 422 ----~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
.|. .|+ ..+|..|...|...|++++|.++.+.+.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 233 3588999999999999999999998886
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-09 Score=96.33 Aligned_cols=338 Identities=14% Similarity=0.108 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 036577 108 SSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD-AVTFNSLIK 185 (470)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 185 (470)
..+.....-|.++|++++|++.|...+.. .|+ +..|.....+|...|++++..+.-...++. .|+ +..+..-..
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRAS 191 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHH
Confidence 34666778888999999999999999986 677 778888999999999999988887777765 333 344555555
Q ss_pred HHHhcCCHHHHH----------------------HHHHH---------HHhcC--CCCCcchHHHHHHHHHh--------
Q 036577 186 GLCAESRIMEAA----------------------ALFTK---------LKAFG--CEPNVITYSTLINGLCR-------- 224 (470)
Q Consensus 186 ~~~~~g~~~~a~----------------------~~~~~---------~~~~g--~~~~~~~~~~l~~~~~~-------- 224 (470)
++-..|++++|+ +++++ +.+.+ +-|+.....+....+..
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 555566655543 22222 11111 11222222222222210
Q ss_pred -----------------cC---ChHHHHHHHHHHHhcCCCCCcccCCC---------HhhHHHHHHHHHhCCCHHHHHHH
Q 036577 225 -----------------TG---HTIVALNLFEEMANGNGEIGVVCEPN---------TVTYTTIIDGLCKEGFVDKAKEL 275 (470)
Q Consensus 225 -----------------~g---~~~~a~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~a~~~ 275 (470)
.+ .+.+|.+.+.+-...... ....+ ..+.......+.-.|+.-.|..-
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~---~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSES---SLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhh---hccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 11 122222222221111100 00111 12222222334457888999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 036577 276 FLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR 355 (470)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 355 (470)
|+........++ ..|--+..+|...++.++....|++..+.+ +-++.+|..-...+.-.+++++|..=|++.+..++.
T Consensus 349 ~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe 426 (606)
T KOG0547|consen 349 FDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE 426 (606)
T ss_pred HHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 999988744332 337777888999999999999999998876 667778888888888899999999999999988654
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-------H
Q 036577 356 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD-------V 428 (470)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~ 428 (470)
+...|.-+..+..+.+.+++++..|++.+.+ ++.-+..|+.....+...++++.|.+.|+..++. .|+ .
T Consensus 427 -~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~ 502 (606)
T KOG0547|consen 427 -NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNA 502 (606)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccc
Confidence 6777888888888999999999999999876 3557889999999999999999999999998864 332 2
Q ss_pred h--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 036577 429 V--IYNTLFIGLFEIHQVERAFKLFDEMRRDGVAA 461 (470)
Q Consensus 429 ~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 461 (470)
. +-..++..- -.+++..|.+++++..+ +.|
T Consensus 503 ~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dp 534 (606)
T KOG0547|consen 503 APLVHKALLVLQ-WKEDINQAENLLRKAIE--LDP 534 (606)
T ss_pred hhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCc
Confidence 1 222222222 34899999999999987 444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-09 Score=91.31 Aligned_cols=266 Identities=15% Similarity=0.127 Sum_probs=148.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHH-HHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHH
Q 036577 183 LIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLI-NGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIID 261 (470)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 261 (470)
|.......-.+++|+++|++....+ |+-...|..+ -+|.+..-++-+.++++-..++- +.++...|..+.
T Consensus 157 LAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-------pdStiA~NLkac 227 (557)
T KOG3785|consen 157 LASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-------PDSTIAKNLKAC 227 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-------CCcHHHHHHHHH
Confidence 3444444456788899998887643 5555555544 45667777788888888877764 445555555444
Q ss_pred HHHhCCCHHHHHHHHHH--------------HHhCCC------------CC-----CHHHHHHHHHHHHccCCHHHHHHH
Q 036577 262 GLCKEGFVDKAKELFLK--------------MKDENI------------NP-----NVVTYNSLIHGFCYANDWNEAKCL 310 (470)
Q Consensus 262 ~~~~~g~~~~a~~~~~~--------------~~~~~~------------~~-----~~~~~~~li~~~~~~~~~~~a~~~ 310 (470)
...+.=.-..|..-... +.++++ -| -+.....|+-.|.+.++..+|..+
T Consensus 228 n~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L 307 (557)
T KOG3785|consen 228 NLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISL 307 (557)
T ss_pred HHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHH
Confidence 33332111111111111 111100 00 112223345567788888888888
Q ss_pred HHHHHHCCCCCCHhHHHHHH-----------------------------------------HHHHHcCCHHHHHHHHHHH
Q 036577 311 LIEMMDQGVQPNVVTFNVIM-----------------------------------------DELCKNGKMDEASRLLDLM 349 (470)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~l~-----------------------------------------~~~~~~g~~~~a~~~~~~~ 349 (470)
..++.-. .|-....-.++ .++.-..++++.+..+..+
T Consensus 308 ~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi 385 (557)
T KOG3785|consen 308 CKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI 385 (557)
T ss_pred HhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665311 12111111111 1111122233333333333
Q ss_pred HHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 036577 350 IQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSY-SILINGYCKNKEIEGALSLYSEMLSKGIKPDV 428 (470)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 428 (470)
..--...|...+ .+.++++..|++.+|+++|-++....+. |..+| ..+.++|.+.|+++.|++++-++ +-+.+.
T Consensus 386 ~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~ 460 (557)
T KOG3785|consen 386 ESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSER 460 (557)
T ss_pred HHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhH
Confidence 322222222223 4677888899999999999777654433 44455 56778999999999998887665 333344
Q ss_pred hHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhh
Q 036577 429 VIYN-TLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTY 466 (470)
Q Consensus 429 ~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 466 (470)
.+.- .+..-|.+.+++=-|.+.|+.+.. +.|+..-|
T Consensus 461 fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 461 FSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 4333 344788899999999999998887 45555444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.6e-09 Score=98.71 Aligned_cols=293 Identities=12% Similarity=0.131 Sum_probs=167.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 036577 114 FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAE--- 190 (470)
Q Consensus 114 ~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 190 (470)
...+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ +.+..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 34455667777777776554332 23334455556666677777777777777777664 33444444444444221
Q ss_pred --CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH-HHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCC
Q 036577 191 --SRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTI-VALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEG 267 (470)
Q Consensus 191 --g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (470)
.+.+...++|+++...- |.......+.-.+.....+. .+..++..+...| .| .+|+.+-..|....
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg-------vP--slF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG-------VP--SLFSNLKPLYKDPE 157 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC-------Cc--hHHHHHHHHHcChh
Confidence 24566666666665532 33333322222222211222 3444444555444 12 24555555555444
Q ss_pred CHHHHHHHHHHHHhC--------------CCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 036577 268 FVDKAKELFLKMKDE--------------NINPNVV--TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMD 331 (470)
Q Consensus 268 ~~~~a~~~~~~~~~~--------------~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 331 (470)
...-..+++...... .-+|+.. ++..+...|-..|++++|++.+++.++.. +..+..|..-..
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Kar 236 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 444444444443321 0123332 34555667777888888888888877773 333556667777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--H----HH--HHHHHHH
Q 036577 332 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDV--F----SY--SILINGY 403 (470)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~----~~--~~l~~~~ 403 (470)
.+-..|++.+|.+.++.....+.. |...-+-.+..+.+.|++++|.+++....+.+..|.. . .| .....+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 788888888888888888777655 6666667777777888888888888777665533311 1 12 3445677
Q ss_pred HHcCChhHHHHHHHHHHH
Q 036577 404 CKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~ 421 (470)
.+.|++..|++.|....+
T Consensus 316 ~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 788888888776665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-10 Score=107.56 Aligned_cols=244 Identities=18% Similarity=0.141 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHhC-----C--
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNST-----G-LFPDLY-TYNILINCFCKMGRVSPGFVVLGRILRS-----C-- 172 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-- 172 (470)
..+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++++|..+|++++.. |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455666999999999999999999987665 2 123333 3344778899999999999999998762 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 036577 173 FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAF-----GC-EPN-VITYSTLINGLCRTGHTIVALNLFEEMANGNGEI 245 (470)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 245 (470)
.+.-..+++.|...|.+.|++++|...+++..+. |. .+. ...++.+...+...+++++|..+++...+.....
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1223456788888999999999999888876532 11 112 2345677788899999999999998876544211
Q ss_pred -CcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 246 -GVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-----N--INPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 246 -~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
+.....-..+++.|...|.+.|++++|.++++++... | ..-....++.|...|.+.+++.+|..+|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1101123457888888899999999999988887642 1 1122345666777777777777777777664331
Q ss_pred ----C--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036577 318 ----G--VQPNVVTFNVIMDELCKNGKMDEASRLLDLMI 350 (470)
Q Consensus 318 ----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 350 (470)
| .+....+|..|...|.+.|+++.|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 12224567777777777777777777776665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-08 Score=92.90 Aligned_cols=362 Identities=14% Similarity=0.124 Sum_probs=246.2
Q ss_pred ccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036577 75 KSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (470)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 154 (470)
.-.|......|+-++|....+..++.++. +...|..+.-.+...+++++|+..|......+ +.|...+.-+.-.-++
T Consensus 45 AmkGL~L~~lg~~~ea~~~vr~glr~d~~--S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 45 AMKGLTLNCLGKKEEAYELVRLGLRNDLK--SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQ 121 (700)
T ss_pred HhccchhhcccchHHHHHHHHHHhccCcc--cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 33455566778999999999998887665 88899999999999999999999999999886 6778888888877888
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCcchHHHHH------HHHHhcCC
Q 036577 155 MGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFG-CEPNVITYSTLI------NGLCRTGH 227 (470)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~l~------~~~~~~g~ 227 (470)
.|+++-........++.. +.....|..+..++.-.|+...|..++++..+.. ..|+...+.... ......|.
T Consensus 122 mRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~ 200 (700)
T KOG1156|consen 122 MRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS 200 (700)
T ss_pred HHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 899888888877777652 3456678888888889999999999999987654 245555554332 33456788
Q ss_pred hHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-ccCCHHH
Q 036577 228 TIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC-YANDWNE 306 (470)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~ 306 (470)
.++|++.+......- ......-..-...+.+.+++++|..++..+... .||...|...+..+. +-.+..+
T Consensus 201 ~q~ale~L~~~e~~i-------~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 201 LQKALEHLLDNEKQI-------VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred HHHHHHHHHhhhhHH-------HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHH
Confidence 888888777654432 222333345567788899999999999999887 466666555443333 3333333
Q ss_pred HH-HHHHHH----------------------------------HHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036577 307 AK-CLLIEM----------------------------------MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ 351 (470)
Q Consensus 307 a~-~~~~~~----------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 351 (470)
+. .+|... .+.|+++ ++..+...|-.-. .+. ++++++.
T Consensus 272 ~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~---k~~-~le~Lvt 344 (700)
T KOG1156|consen 272 ALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPE---KVA-FLEKLVT 344 (700)
T ss_pred HHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchh---HhH-HHHHHHH
Confidence 33 333332 2333222 1222222221111 111 3333221
Q ss_pred c------C------------CCCCHhHH--HHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChh
Q 036577 352 I------G------------VRPNAFVY--NTLMDGFCLTGRVNRAKELFVSMESNRCMH-DVFSYSILINGYCKNKEIE 410 (470)
Q Consensus 352 ~------~------------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 410 (470)
. | -+|....| -.++..+-+.|+++.|..+.+..+.+ .| -+..|..=.+.+...|+++
T Consensus 345 ~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~ 422 (700)
T KOG1156|consen 345 SYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLD 422 (700)
T ss_pred HHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChH
Confidence 1 1 13454444 45677788999999999999998886 34 3455666678888999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 036577 411 GALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGV 459 (470)
Q Consensus 411 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (470)
+|..++++..+.+. +|..+=..-..-..+..+.++|.++.-.+.+.|.
T Consensus 423 eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 423 EAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 99999999986542 2433332445556678899999999988887764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.5e-11 Score=111.39 Aligned_cols=276 Identities=16% Similarity=0.239 Sum_probs=186.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036577 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFG 207 (470)
Q Consensus 128 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 207 (470)
.++-.+...|+.|+..||..+|.-||..|+.+.|- +|.-|.-...+.+..+++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35566777788888888888888888888888887 8887777767777888888888888888777665
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCC
Q 036577 208 CEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-NINP 286 (470)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~ 286 (470)
.|...+|..+..+|...||... ++..++ ....+...+...|.-.....++..+... +.-|
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lp 140 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLP 140 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHH-----------------HHHHHHhhhhhhccCcHHHHHHhhcccCcccch
Confidence 4778888888888888888765 222222 1122334455556555555555554322 3334
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLM 365 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 365 (470)
|..+ .+......|-|+.+++++..+..... .|... ++.-+.... .-..++........-.|+..+|..++
T Consensus 141 da~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l 211 (1088)
T KOG4318|consen 141 DAEN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVL 211 (1088)
T ss_pred hHHH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHH
Confidence 4432 34444556777777777766533210 11111 233222222 22233333333222257889999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 036577 366 DGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVE 445 (470)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 445 (470)
.+-...|+.+.|..++.+|.+.|.+.+..-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+..+|...
T Consensus 212 ~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 212 KRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred HHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 9989999999999999999999988887777777655 7888888888999999999999999988888888866533
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=110.93 Aligned_cols=273 Identities=13% Similarity=0.113 Sum_probs=199.9
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036577 93 IFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 172 (470)
Q Consensus 93 ~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 172 (470)
++-.+...+.. |+..+|.++|.-|+..|+.+.|- +|.-|.-...+-+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34445555555 88899999999999999999888 9999988887888889999999999999888775
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCC
Q 036577 173 FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPN 252 (470)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (470)
.|...+|..|...|...||+.. .+..++ -.-.+...+...|--..-..++..+.-..+ .-||
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~-----~lpd 141 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPH-----SLPD 141 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcc-----cchh
Confidence 6788999999999999999876 222333 122334455666666666666655443322 2444
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 253 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENI-NPNVVTYNSLIHGFCYAN-DWNEAKCLLIEMMDQGVQPNVVTFNVIM 330 (470)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 330 (470)
.. ..+....-.|-++.+++++..+..... .|..+ +++-+.... .+++-..+.....+ .|+..+|..++
T Consensus 142 a~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l 211 (1088)
T KOG4318|consen 142 AE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVL 211 (1088)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHH
Confidence 43 344445566778888888877654321 12222 244443333 33443333333332 58999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036577 331 DELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKE 408 (470)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (470)
.+-...|+.+.|..++.+|.+.|++.+..-|..|+-+ .++...++.+...|.+.|+.|+..|+...+..+...|.
T Consensus 212 ~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 212 KRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999999999999999898888887766 88899999999999999999999999988888777555
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-08 Score=89.03 Aligned_cols=306 Identities=12% Similarity=0.025 Sum_probs=217.5
Q ss_pred CCHHHHHHHHHHHHhc--CCcchHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cchH
Q 036577 140 PDLYTYNILINCFCKM--GRVSPGFVVLGRILR-SCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPN-VITY 215 (470)
Q Consensus 140 ~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~ 215 (470)
|...+....+.+++.. ++...|.+.+--+.. .-++.|+.....+..++...|+.++|+..|++....+ |+ ....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~M 269 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAM 269 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhH
Confidence 3333444445444443 444444444433332 3356788888999999999999999999999987642 33 2222
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 036577 216 STLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLI 295 (470)
Q Consensus 216 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 295 (470)
....-.+.+.|+.+....+...+.... .-....|..-+......++++.|+.+-++..+.+ +.+...+-.-.
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG 341 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKG 341 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhcc
Confidence 333444567889988888888887654 3344455555556666788899999888887753 22444554445
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH-HHHHc-CCC
Q 036577 296 HGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLM-DGFCL-TGR 373 (470)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~ 373 (470)
..+...|++++|.-.|+..+... +-+...|.-++.+|...|++.+|..+-+...+. .+.+..+.+.+. ..+.. ..-
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchh
Confidence 67788899999999999888764 457789999999999999999999888877665 334666766653 33332 233
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 036577 374 VNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDE 453 (470)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (470)
-++|.++++.....+ +.-....+.+...+...|..+.++.++++.+.. .||....+.|.+.+...+.+++|.+.|..
T Consensus 420 rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 420 REKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 578888888877653 224556677888899999999999999998853 78999999999999999999999999988
Q ss_pred HHHcCCCCC
Q 036577 454 MRRDGVAAD 462 (470)
Q Consensus 454 m~~~g~~p~ 462 (470)
..+ +.|.
T Consensus 497 ALr--~dP~ 503 (564)
T KOG1174|consen 497 ALR--QDPK 503 (564)
T ss_pred HHh--cCcc
Confidence 876 5554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.8e-12 Score=79.37 Aligned_cols=50 Identities=50% Similarity=0.868 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 036577 391 HDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE 440 (470)
Q Consensus 391 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (470)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.3e-08 Score=88.84 Aligned_cols=371 Identities=13% Similarity=0.127 Sum_probs=201.4
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (470)
...+|++...+..|+.++..-|..-....|...+......+-++.++++|++.++. ++..-...+..++..+++++
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDE 187 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHH
Confidence 34567788888888888877765444567888888888888888888888887764 23345666777777788877
Q ss_pred HHHHHHHHHhCC------CCCCHH--------------------------------------HHHHHHHHHHhcCCHHHH
Q 036577 161 GFVVLGRILRSC------FTPDAV--------------------------------------TFNSLIKGLCAESRIMEA 196 (470)
Q Consensus 161 a~~~~~~~~~~~------~~~~~~--------------------------------------~~~~l~~~~~~~g~~~~a 196 (470)
|.+.+..++... .+.+.. .|++|.+-|.+.|.++.|
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 777776654321 011222 356666666666666666
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH----------------------HHHHHHHHHhcCCCCC-----ccc
Q 036577 197 AALFTKLKAFGCEPNVITYSTLINGLCRTGHTIV----------------------ALNLFEEMANGNGEIG-----VVC 249 (470)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~----------------------a~~~~~~~~~~~~~~~-----~~~ 249 (470)
..+|++.... ..+..-|..+.++|++-....- .+..|+.+.+..+... .+.
T Consensus 268 rDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 268 RDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 6666665542 2344445555555554221111 1111111111110000 000
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-
Q 036577 250 EPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP------NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN- 322 (470)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~- 322 (470)
+.++..|..-+. ...|+..+....|.++... +.| -...|..+.+.|-..|+.+.|..+|++..+...+.-
T Consensus 346 ~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 346 PHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 111111111111 1234555556666655543 112 234577778888888888888888888876543221
Q ss_pred --HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------CCHhHHHHHHHHHHcCCCHHHHHHHHHH
Q 036577 323 --VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-----------------PNAFVYNTLMDGFCLTGRVNRAKELFVS 383 (470)
Q Consensus 323 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (470)
..+|..-...-.++.+++.|.++.+.....--. -+...|...++..-..|-++....++++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 334555555566777888888887776543111 0223455555555667778888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHh---cCCHHHHHHHHHHHHHcCC
Q 036577 384 MESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV-IYNTLFIGLFE---IHQVERAFKLFDEMRRDGV 459 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~ 459 (470)
+++..+. ++.........+-.+.-++++.+++++-+..=..|+.. .|+..+..+.+ .-+.+.|..+|++..+ |.
T Consensus 503 iidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C 580 (835)
T KOG2047|consen 503 IIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC 580 (835)
T ss_pred HHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC
Confidence 7765432 22222222223334444555555555544332223332 55554443332 1245666666666665 44
Q ss_pred CCC
Q 036577 460 AAD 462 (470)
Q Consensus 460 ~p~ 462 (470)
+|+
T Consensus 581 pp~ 583 (835)
T KOG2047|consen 581 PPE 583 (835)
T ss_pred CHH
Confidence 443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-09 Score=93.88 Aligned_cols=218 Identities=11% Similarity=-0.020 Sum_probs=138.8
Q ss_pred ChhHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 86 TPNEAFCIFDYMLNMRPSP--PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
..+.++.-+.+++...+.. .....|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4456666666676544321 124567777788888888888888888888765 5567788888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 036577 164 VLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (470)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 243 (470)
.|++.++.. +.+..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...|++.....
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 888888753 3356677778888888888888888888887653 443222222223345677888888886655332
Q ss_pred CCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC---CC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 244 EIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE---NI---NPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
.++...+ . ......|+...+ +.++.+.+. .. +.....|..+...+.+.|++++|...|++..+.
T Consensus 196 ------~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 ------DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred ------CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2222211 2 222234544433 233333321 10 012346677777777777777777777777766
Q ss_pred C
Q 036577 318 G 318 (470)
Q Consensus 318 ~ 318 (470)
+
T Consensus 266 ~ 266 (296)
T PRK11189 266 N 266 (296)
T ss_pred C
Confidence 4
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.7e-09 Score=84.40 Aligned_cols=193 Identities=12% Similarity=0.009 Sum_probs=94.0
Q ss_pred cCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 76 SSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (470)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 155 (470)
-.+.+++..|++..|.+.++++++.+|. +..+|..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+|..
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 3344455555555555555555555544 45555555555555555555555555555443 33444555555555555
Q ss_pred CCcchHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 036577 156 GRVSPGFVVLGRILRSC-FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNL 234 (470)
Q Consensus 156 g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~ 234 (470)
|++++|.+.|++.+... +..-..+|..+.-+..+.|+++.|...|++..+.. +-...+.-.+.......|++..|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 55555555555554421 11122344444444555555555555555554432 11233444444445555555555555
Q ss_pred HHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 036577 235 FEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKM 279 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 279 (470)
++.....+ .++....-..|+.--..|+.+.+-+.=..+
T Consensus 196 ~~~~~~~~-------~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 196 LERYQQRG-------GAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHhcc-------cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 55554443 344444444444444455544444433333
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-08 Score=90.19 Aligned_cols=357 Identities=14% Similarity=0.141 Sum_probs=239.3
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 036577 80 GDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 80 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
......++++|++.|..++..+++ |...|.-+.-.-++.|+++.....-..+.+.. +.....|..+..++.-.|+..
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~d--N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKD--NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHH
Confidence 344567899999999999999887 89999888888888999998888888887763 445667888888899999999
Q ss_pred hHHHHHHHHHhCC-CCCCHHHHHHHHH------HHHhcCCHHHHHHHHHHHHhcCCCCCcchH-HHHHHHHHhcCChHHH
Q 036577 160 PGFVVLGRILRSC-FTPDAVTFNSLIK------GLCAESRIMEAAALFTKLKAFGCEPNVITY-STLINGLCRTGHTIVA 231 (470)
Q Consensus 160 ~a~~~~~~~~~~~-~~~~~~~~~~l~~------~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~-~~l~~~~~~~g~~~~a 231 (470)
.|..+++...+.. -.|+...+..... ...+.|.++.|.+.+..-... ..|-..+ ..-...+.+.++.++|
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 9999999988754 2466666554433 345677888888777665432 1232222 3445677889999999
Q ss_pred HHHHHHHHhcCCCCCcccCCCHhhHH-HHHHHHHhCCCHHHHH-HHHHHHHh----------------------------
Q 036577 232 LNLFEEMANGNGEIGVVCEPNTVTYT-TIIDGLCKEGFVDKAK-ELFLKMKD---------------------------- 281 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~-~~~~~~~~---------------------------- 281 (470)
..++..+.... ||...|. .+..++.+-.+.-++. .+|....+
T Consensus 239 ~~~y~~Ll~rn--------Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdky 310 (700)
T KOG1156|consen 239 VKVYRRLLERN--------PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKY 310 (700)
T ss_pred HHHHHHHHhhC--------chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHH
Confidence 99999998865 4444444 4444443332323333 44444332
Q ss_pred ------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----CC----------CCCCHhH--HHHHHHHHHHcCCH
Q 036577 282 ------ENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMD----QG----------VQPNVVT--FNVIMDELCKNGKM 339 (470)
Q Consensus 282 ------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~--~~~l~~~~~~~g~~ 339 (470)
.|++ .++..+...|-.-...+-..++.-.+.. .| -+|.... +..++..+-+.|++
T Consensus 311 L~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~ 387 (700)
T KOG1156|consen 311 LRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDY 387 (700)
T ss_pred HHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccH
Confidence 2222 1222333333221211111111111111 01 1455444 45567789999999
Q ss_pred HHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 036577 340 DEASRLLDLMIQIGVRPN-AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSE 418 (470)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 418 (470)
+.|...++..+.+ .|+ ...|..-.+.+.+.|++++|...+++..+.+ .+|...-.--+.-..++++.++|.++...
T Consensus 388 ~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 388 EVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSK 464 (700)
T ss_pred HHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 9999999999987 444 4566677789999999999999999998875 55666555677777889999999999998
Q ss_pred HHHCCCCC--C----HhHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 036577 419 MLSKGIKP--D----VVIYNTL--FIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 419 ~~~~~~~p--~----~~~~~~l--~~~~~~~g~~~~A~~~~~~m~ 455 (470)
....|... + .-+|..+ ..+|.++|++.+|++-|..+.
T Consensus 465 FTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 465 FTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 88766410 1 1134333 367888888888887776664
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.7e-08 Score=90.80 Aligned_cols=305 Identities=11% Similarity=0.004 Sum_probs=156.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGL-FPDL-YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSL 183 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (470)
.+..|..+...+...|+.+.+...+....+... ..+. .........+...|++++|.+.+++.++.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 456666677777777777776666666544321 1121 222233345566777888888877777652 334434432
Q ss_pred HHHHH----hcCCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHH
Q 036577 184 IKGLC----AESRIMEAAALFTKLKAFGCEPN-VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTT 258 (470)
Q Consensus 184 ~~~~~----~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (470)
...+. ..+..+.+.+.++.. ....|+ ......+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------p~~~~~~~~ 153 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-------PDDAWAVHA 153 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCcHHHHH
Confidence 22222 234444444444431 111122 2233344556677788888888888877765 455666777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHhHH-H--HHHH
Q 036577 259 IIDGLCKEGFVDKAKELFLKMKDENI-NPNV--VTYNSLIHGFCYANDWNEAKCLLIEMMDQGV-QPNVVTF-N--VIMD 331 (470)
Q Consensus 259 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~ 331 (470)
+..++...|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW 233 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH
Confidence 77777778888888888777665421 1222 2344566777777888888888777654321 1111111 1 2222
Q ss_pred HHHHcCCHHHHHHH--HHHHHHcCC--CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC------C--CHHHHHHH
Q 036577 332 ELCKNGKMDEASRL--LDLMIQIGV--RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCM------H--DVFSYSIL 399 (470)
Q Consensus 332 ~~~~~g~~~~a~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~--~~~~~~~l 399 (470)
-+...|....+.++ +........ ............++...|+.+.|..+++.+...... . .....-..
T Consensus 234 ~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~ 313 (355)
T cd05804 234 RLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAE 313 (355)
T ss_pred HHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHH
Confidence 23333333322222 111111100 001111124455566677777777777666542111 0 11112222
Q ss_pred HHHHHHcCChhHHHHHHHHHHH
Q 036577 400 INGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
..++...|+.++|.+.+.+.+.
T Consensus 314 A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 314 ALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3334566667777666666553
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.3e-09 Score=83.20 Aligned_cols=197 Identities=13% Similarity=0.021 Sum_probs=115.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHH
Q 036577 180 FNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTI 259 (470)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (470)
...|.-.|...|+...|..-+++.+++. +-+..+|..+...|.+.|+.+.|.+.|++..... +.+..+.|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------p~~GdVLNNY 109 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-------PNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-------CCccchhhhh
Confidence 4445556666666666666666666542 2234556666666666666666666666666654 4455666666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC
Q 036577 260 IDGLCKEGFVDKAKELFLKMKDE-NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK 338 (470)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 338 (470)
...+|..|++++|...|+..... ....-..+|..+.-+..+.|+.+.|...|++..+.. +-.....-.+.....+.|+
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGD 188 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhccc
Confidence 66666666666666666666553 112233455566666666666666666666666553 2233445555555666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 339 MDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
+..|...++.....+. ++...+-..|+.-...|+.+.+.++=.++.+
T Consensus 189 y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 189 YAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred chHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666666666655544 4555555555555566666665555444443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-07 Score=87.28 Aligned_cols=341 Identities=16% Similarity=0.067 Sum_probs=230.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC-CHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP-DAVTFNSLI 184 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 184 (470)
++..|..+.-++...|+++.+.+.|++....- .-..+.|..+...+...|.-..|..+++.-....-.| +...+-..-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 68889999999999999999999999876542 4456789999999999999999999998876543223 344444444
Q ss_pred HHHH-hcCCHHHHHHHHHHHHhc--CC--CCCcchHHHHHHHHHh-----------cCChHHHHHHHHHHHhcCCCCCcc
Q 036577 185 KGLC-AESRIMEAAALFTKLKAF--GC--EPNVITYSTLINGLCR-----------TGHTIVALNLFEEMANGNGEIGVV 248 (470)
Q Consensus 185 ~~~~-~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~l~~~~~~-----------~g~~~~a~~~~~~~~~~~~~~~~~ 248 (470)
..|. +.+.+++++.+-.+..+. +. ......|..+.-+|.. .....++++.+++..+.++
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~----- 475 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP----- 475 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-----
Confidence 4443 456777777777666652 11 1223344444444432 1224568888888887763
Q ss_pred cCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CC--------
Q 036577 249 CEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ-GV-------- 319 (470)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~-------- 319 (470)
.|+.+...+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+..... |.
T Consensus 476 --~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 --TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred --CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 3444444444556667788888888888877755567777877777777777777777766544321 00
Q ss_pred --------------------------------------------------------------------------------
Q 036577 320 -------------------------------------------------------------------------------- 319 (470)
Q Consensus 320 -------------------------------------------------------------------------------- 319 (470)
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence
Q ss_pred -----C--CC------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 320 -----Q--PN------VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 320 -----~--~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
. |+ ...|......+.+.++.++|...+.+..... ......|......+...|..++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 0 00 0111222333444444555554444444432 22344455555666677888888888877776
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHH--HHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 387 NRCMHDVFSYSILINGYCKNKEIEGALS--LYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 387 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
.+ +.++....++..++.+.|+..-|.. ++.++.+.+.. +...|..+...+.+.|+.+.|.+.|....+.
T Consensus 713 ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 54 3467788999999999999888888 99999987644 7889999999999999999999999998863
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.7e-09 Score=92.89 Aligned_cols=94 Identities=15% Similarity=0.001 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHH
Q 036577 180 FNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTI 259 (470)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (470)
|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|.+.|++..+.. +.+..+|..+
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~l 138 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTYNYAYLNR 138 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHH
Confidence 4444444444555555555554444432 1233444444445555555555555555544433 2233444444
Q ss_pred HHHHHhCCCHHHHHHHHHHHHh
Q 036577 260 IDGLCKEGFVDKAKELFLKMKD 281 (470)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~ 281 (470)
..++...|++++|.+.|+...+
T Consensus 139 g~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 139 GIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 4444445555555555544444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-11 Score=76.29 Aligned_cols=49 Identities=49% Similarity=0.931 Sum_probs=27.0
Q ss_pred CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 299 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 299 (470)
||..+|+.++++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-08 Score=86.27 Aligned_cols=287 Identities=15% Similarity=0.051 Sum_probs=201.9
Q ss_pred CChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 036577 121 KHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD-AVTFNSLIKGLCAESRIMEAAA 198 (470)
Q Consensus 121 ~~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 198 (470)
++...|.+.+-.+... -++.|+.....+..++...|+.++|...|+..... .|+ ........-.+.+.|+.+....
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 4444444443333222 34667888888999999999999999999887754 333 2223333444567888888888
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHH
Q 036577 199 LFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLK 278 (470)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 278 (470)
+...+.... +-+...|-.-+.......+++.|+.+-++.++.+ +.+...|-.-...+...|+.++|.-.|+.
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-------~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-------PRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-------cccchHHHhccHHHHhccchHHHHHHHHH
Confidence 887776531 2234445555555667788888998888888765 55666777777788888999999988888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHH-HcCCHHHHHHHHHHHHHcCCCC
Q 036577 279 MKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIM-DELC-KNGKMDEASRLLDLMIQIGVRP 356 (470)
Q Consensus 279 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~ 356 (470)
..... +-+..+|..|+.+|...|.+.+|..+-+...+.- +.+..+...+. ..+. ....-++|..+++...+..+.
T Consensus 360 Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~- 436 (564)
T KOG1174|consen 360 AQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI- 436 (564)
T ss_pred HHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-
Confidence 77652 3477889999999999999998887777665541 34555555552 3332 223357788888888776332
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 357 NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
-....+.+...+...|..+.++.+++..... .||....+.|.+.+...+.+++|.+.|...+..
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 2445667778888889999999998887764 578888888999898899999999988888754
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-07 Score=84.51 Aligned_cols=364 Identities=16% Similarity=0.116 Sum_probs=207.2
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPG 161 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 161 (470)
...+++++|.+....++...|. +..++..-+.++.+.++|++|+.+.+.-... .-+..-+..-.-+..+.+..++|
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHH
Confidence 3567899999999999998876 7778888888899999999999655432211 11111111223344577889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------------------------CCcch
Q 036577 162 FVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCE---------------------------PNVIT 214 (470)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~---------------------------~~~~~ 214 (470)
+..++... +.+..+...-...+.+.|++++|..+|+.+.+.+.+ ....+
T Consensus 99 lk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 99 LKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDS 174 (652)
T ss_pred HHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcch
Confidence 88887322 223446666677788899999999999888544311 01223
Q ss_pred HHHH---HHHHHhcCChHHHHHHHHHHHhcCCCCC-------cccCCCH-hhHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 036577 215 YSTL---INGLCRTGHTIVALNLFEEMANGNGEIG-------VVCEPNT-VTYTTIIDGLCKEGFVDKAKELFLKMKDEN 283 (470)
Q Consensus 215 ~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 283 (470)
|..+ ...++..|++.+|+++++.....+.+.- ..+.... ..-.-+..++-..|+-++|..++.......
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 3333 3345678999999999999833221100 0001111 112334556778999999999999988764
Q ss_pred CCCCH----HHHHHHHHHHHccCCHH----------------HHHHHHH-------------------------HHHHC-
Q 036577 284 INPNV----VTYNSLIHGFCYANDWN----------------EAKCLLI-------------------------EMMDQ- 317 (470)
Q Consensus 284 ~~~~~----~~~~~li~~~~~~~~~~----------------~a~~~~~-------------------------~~~~~- 317 (470)
. +|. +.-|.|+..-....-++ .+..-+. +....
T Consensus 255 ~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 255 P-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred C-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 3 232 12222222111110000 0000000 00000
Q ss_pred -CCCCCHhHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHH--------HHHH
Q 036577 318 -GVQPNVVTFNVIMDELCK--NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFV--------SMES 386 (470)
Q Consensus 318 -~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~ 386 (470)
+..|. ..+..++..+.+ ......+..++...-+....-...+.-..+......|+++.|.+++. .+.+
T Consensus 334 p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~ 412 (652)
T KOG2376|consen 334 PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE 412 (652)
T ss_pred CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence 11222 233333333222 22355666666666555333334455566677778888888888888 4555
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 387 NRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK--GIKPD----VVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 387 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
.+..|. +...+...+.+.++-+.|..++.+.+.. .-.+. ..++.-+...-.+.|+.++|..+++++.+.
T Consensus 413 ~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 413 AKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 444443 4445666677777777777776665531 00111 123333444455678888888888888773
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-07 Score=86.63 Aligned_cols=307 Identities=12% Similarity=0.016 Sum_probs=193.4
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHH
Q 036577 141 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCF-TPDA-VTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTL 218 (470)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 218 (470)
....|..+...+...|+.+.+.+.+....+... ..+. .........+...|++++|.+.+++..+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 345666777777788888887777777665321 1222 222233445667899999999999988753 334444442
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 219 INGLCR----TGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSL 294 (470)
Q Consensus 219 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 294 (470)
...+.. .+....+.+.++..... .+........+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~l 154 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPE-------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAV 154 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcC-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 222222 44555555555541111 23344555667788899999999999999999874 3456778888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCC-CCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHhHH-H--HHHHH
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGV-QPNV--VTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PNAFVY-N--TLMDG 367 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~-~--~l~~~ 367 (470)
...+...|++++|...+++..+... .++. ..|..+...+...|++++|..++++....... +..... + .++..
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR 234 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH
Confidence 9999999999999999999887532 1232 34557888899999999999999998654331 122111 1 23333
Q ss_pred HHcCCCHHHHHHH---HHHHHHCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-------C-CHhHHHHHH
Q 036577 368 FCLTGRVNRAKEL---FVSMESNRC-MHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK-------P-DVVIYNTLF 435 (470)
Q Consensus 368 ~~~~g~~~~A~~~---~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------p-~~~~~~~l~ 435 (470)
+...|....+.+. ......... ............++...|+.++|..+++.+...... . .........
T Consensus 235 ~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A 314 (355)
T cd05804 235 LELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEA 314 (355)
T ss_pred HHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHH
Confidence 4445543333332 111111100 111222235667788899999999999988763211 0 112222233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 036577 436 IGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
.++...|++++|.+.+......
T Consensus 315 ~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 315 LYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5566899999999999988754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-07 Score=85.81 Aligned_cols=374 Identities=12% Similarity=0.121 Sum_probs=227.8
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 036577 77 SGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKM 155 (470)
Q Consensus 77 ~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~ 155 (470)
.|...++.|+++.|+.+|...+...|. +...|..-..+|+..|+|++|++=-.+-.+. .|+ ...|.....++.-.
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPT--NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhc
Confidence 344567789999999999999998876 8889999999999999999998877766665 454 45899999999999
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHhc---CCCCCcchHHHHHHHHHh-----
Q 036577 156 GRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAA---ALFTKLKAF---GCEPNVITYSTLINGLCR----- 224 (470)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~---g~~~~~~~~~~l~~~~~~----- 224 (470)
|++++|+.-|.+-++.. +.+...++.+..++.......+.. .++..+... ........|..++..+-+
T Consensus 84 g~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred ccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999999988763 445667777777762110000000 000000000 000001112222221110
Q ss_pred -----cCChHHHHHHHHHH-----HhcCCCC-CcccCC----------------------CHhhHHHHHHHHHhCCCHHH
Q 036577 225 -----TGHTIVALNLFEEM-----ANGNGEI-GVVCEP----------------------NTVTYTTIIDGLCKEGFVDK 271 (470)
Q Consensus 225 -----~g~~~~a~~~~~~~-----~~~~~~~-~~~~~~----------------------~~~~~~~l~~~~~~~g~~~~ 271 (470)
-.++..+...+... ...+... .....| -..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 00011111111000 0000000 000000 11236677777778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHH-------HHHHHHHcCCHHHHHH
Q 036577 272 AKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNV-------IMDELCKNGKMDEASR 344 (470)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~~~~a~~ 344 (470)
|.+-+....... -+..-++....+|...|.+.++...-....+.|.. ...-|+. +..+|.+.++++.++.
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 888887777653 35555566667777777777777776666655421 2222322 2334555666777777
Q ss_pred HHHHHHHcCCCCCHhH-------------------------HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036577 345 LLDLMIQIGVRPNAFV-------------------------YNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSIL 399 (470)
Q Consensus 345 ~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 399 (470)
.|.+.......|+... ...-...+.+.|++..|...|.+++... +.|...|...
T Consensus 320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNR 398 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNR 398 (539)
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHH
Confidence 7776655433333221 1112445667888899999888888876 5588888888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 036577 400 INGYCKNKEIEGALSLYSEMLSKGIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADT 463 (470)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 463 (470)
.-||.+.|.+..|++=.+..++. .|+ ...|.-=..++....+++.|.+.|++.++ +.|+.
T Consensus 399 Aac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~ 459 (539)
T KOG0548|consen 399 AACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSN 459 (539)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchh
Confidence 88899999988888887777765 333 33555555666667788888888888776 33543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-07 Score=79.03 Aligned_cols=296 Identities=11% Similarity=0.058 Sum_probs=214.2
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcC
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT-YNILINCFCKMG 156 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g 156 (470)
|...+..|++.+|+.-|..+++.+|. +-.++-.-...|...|+-..|+.-+.+.++. +||-.. --.-...+.+.|
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGDPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 34456678899999999999997776 6666667778888999999999999998886 677442 233456778999
Q ss_pred CcchHHHHHHHHHhCCCCCC--HH------------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 036577 157 RVSPGFVVLGRILRSCFTPD--AV------------TFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGL 222 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~--~~------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 222 (470)
.+++|..-|+.+++...... .. .....+..+...|+...|+.....+++.. +-|...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 99999999999988642111 11 12223445566889999999999988753 45777778888899
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHH----HHH----
Q 036577 223 CRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY----NSL---- 294 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l---- 294 (470)
...|+...|+.-++...... ..++.++.-+-..+...|+.+.++...++.++. .||.... ..+
T Consensus 200 i~~~e~k~AI~Dlk~askLs-------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLS-------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcc-------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 99999999988888776654 557778888888888999999999998888875 4554322 111
Q ss_pred -----HHHHHccCCHHHHHHHHHHHHHCCCCCCHhH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 036577 295 -----IHGFCYANDWNEAKCLLIEMMDQGVQPNVVT---FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 366 (470)
Q Consensus 295 -----i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (470)
+......++|.++++-.+..++......... +..+-.++...|++.+|++...+++..... |+.++.--..
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAe 349 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHH
Confidence 1223456777788877777777642212222 334445666778888888888888876432 5778888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHCC
Q 036577 367 GFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
+|.-...++.|+.-|+...+.+
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcC
Confidence 8888888888888888887764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-06 Score=79.08 Aligned_cols=394 Identities=12% Similarity=0.101 Sum_probs=253.8
Q ss_pred HHHHHhhhhccCChhhHHHHHHHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 036577 50 AKLKESLRLTVKDRASLEKFLRERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSL 129 (470)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 129 (470)
....++|+..+.+..-....+..+....-+.+.-...++.--..|+..+..... -+..|...+..+.++|+...-...
T Consensus 47 ~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHk--mpRIwl~Ylq~l~~Q~~iT~tR~t 124 (835)
T KOG2047|consen 47 LLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHK--MPRIWLDYLQFLIKQGLITRTRRT 124 (835)
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHhcchHHHHHHH
Confidence 344556664444444344444333333322222223344444445544442222 345788889999999999999999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Q 036577 130 FKRLNST-GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFG- 207 (470)
Q Consensus 130 ~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g- 207 (470)
|+..+.. .+......|...+.-....|-++.+..++++-++. ++..-+-.+..+++.+++++|-+.+.......
T Consensus 125 fdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~ 200 (835)
T KOG2047|consen 125 FDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDE 200 (835)
T ss_pred HHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchh
Confidence 9987664 33344557888888888888899999999999875 33446778888999999999999998876431
Q ss_pred -----CCCCcchHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 036577 208 -----CEPNVITYSTLINGLCRTGHTI---VALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKM 279 (470)
Q Consensus 208 -----~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 279 (470)
.+.+-..|..+.....+.-+.. ....+++.+.... ...-...|.+|.+.|.+.|.+++|..+|++.
T Consensus 201 f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf------tDq~g~Lw~SLAdYYIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 201 FVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF------TDQLGFLWCSLADYYIRSGLFEKARDVYEEA 274 (835)
T ss_pred hhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC------cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2344556666666665554433 2344455554433 1223467899999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHccC----------------------CHHHHHHHHHHHHHCC-----------CCCCHhHH
Q 036577 280 KDENINPNVVTYNSLIHGFCYAN----------------------DWNEAKCLLIEMMDQG-----------VQPNVVTF 326 (470)
Q Consensus 280 ~~~~~~~~~~~~~~li~~~~~~~----------------------~~~~a~~~~~~~~~~~-----------~~~~~~~~ 326 (470)
... ..++.-|..+.+.|+.-. +++-...-|+.+...+ -+.++..|
T Consensus 275 i~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW 352 (835)
T KOG2047|consen 275 IQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEW 352 (835)
T ss_pred HHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHH
Confidence 775 234444555555444221 1222333333333321 12233344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHH
Q 036577 327 NVIMDELCKNGKMDEASRLLDLMIQIGVRP------NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHD---VFSYS 397 (470)
Q Consensus 327 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~ 397 (470)
..-+. ...|+..+-...+.++++. +.| -...|..+.+.|-..|+++.|+.+|++......+-- ..+|.
T Consensus 353 ~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~ 429 (835)
T KOG2047|consen 353 HKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWC 429 (835)
T ss_pred Hhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHH
Confidence 33333 2356777778888887765 222 235688889999999999999999999887643322 45566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCC----------C-------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036577 398 ILINGYCKNKEIEGALSLYSEMLSKGIK----------P-------DVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVA 460 (470)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 460 (470)
.....-.+..+++.|+++.+......-. | +...|..+++.....|-++....+++++++..+.
T Consensus 430 ~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 430 AWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 6666677788999999998877532111 1 2456667777777789999999999999886543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-07 Score=95.82 Aligned_cols=342 Identities=13% Similarity=-0.006 Sum_probs=216.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC------CCC--HHHHHHHHHH
Q 036577 115 GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCF------TPD--AVTFNSLIKG 186 (470)
Q Consensus 115 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~ 186 (470)
..+...|+++.+..+++.+.......+..........+...|+++++..+++.....-- .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34445677777767666552211112222334455566778999999998887754210 111 1222333455
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHH
Q 036577 187 LCAESRIMEAAALFTKLKAFGCEPN----VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDG 262 (470)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (470)
+...|++++|...+++....-...+ ....+.+...+...|++++|...+++........+. ......++..+...
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~-~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV-YHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHHH
Confidence 6689999999999998876311111 123455666778899999999999988754321110 11123455667778
Q ss_pred HHhCCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCC--CHhHHHHHHH
Q 036577 263 LCKEGFVDKAKELFLKMKDE----NIN--P-NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQG--VQP--NVVTFNVIMD 331 (470)
Q Consensus 263 ~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~ 331 (470)
+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88999999999998886542 211 1 22344555667778899999999998875531 112 2334455666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-HhHH-----HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 036577 332 ELCKNGKMDEASRLLDLMIQIGVRPN-AFVY-----NTLMDGFCLTGRVNRAKELFVSMESNRCMHD---VFSYSILING 402 (470)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~ 402 (470)
.+...|++++|...++.......... ...+ ...+..+...|+.+.|...+........... ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 78899999999999988765311111 1111 1122444568999999998876544221111 1124567778
Q ss_pred HHHcCChhHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 403 YCKNKEIEGALSLYSEMLSK----GIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
+...|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999988753 33322 235666778889999999999999999864
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.4e-07 Score=85.97 Aligned_cols=259 Identities=12% Similarity=0.048 Sum_probs=163.9
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 239 (470)
++++.+++..+.+ +.|..+...+.--|+..++++.|.+...+..+.+-..+...|..+.-.+...+++.+|+.+.+...
T Consensus 462 kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 462 KSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4445555555543 223333333444566677777777777777776555667777777777777777777777777766
Q ss_pred hcCCCCCc-------------ccCCCHhhHHHHHHHHHh------C-----------------CCHHHHHHHHHHHH---
Q 036577 240 NGNGEIGV-------------VCEPNTVTYTTIIDGLCK------E-----------------GFVDKAKELFLKMK--- 280 (470)
Q Consensus 240 ~~~~~~~~-------------~~~~~~~~~~~l~~~~~~------~-----------------g~~~~a~~~~~~~~--- 280 (470)
+.-+.... ....-..|...++..+-. . ++..++.+....+.
T Consensus 541 ~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 541 EEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred HHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 54321000 000011122222222210 0 01111111111100
Q ss_pred -----hCC----C-------CCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC
Q 036577 281 -----DEN----I-------NPN------VVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK 338 (470)
Q Consensus 281 -----~~~----~-------~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 338 (470)
..+ . .|+ ...|......+.+.+..++|...+.+..+.. +.....|......+...|.
T Consensus 621 a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 621 ASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred HhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHh
Confidence 000 0 011 1223344556667777777777776666553 4556677777788889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 036577 339 MDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKE--LFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLY 416 (470)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (470)
.++|.+.|......++. ++...+++..++.+.|+...|.. ++..+.+.+ +.+...|..+...+-+.|+.+.|.+.|
T Consensus 700 ~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 700 LEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred hHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 99999999999987654 67788999999999999888888 999998876 559999999999999999999999999
Q ss_pred HHHHHC
Q 036577 417 SEMLSK 422 (470)
Q Consensus 417 ~~~~~~ 422 (470)
....+.
T Consensus 778 ~aa~qL 783 (799)
T KOG4162|consen 778 QAALQL 783 (799)
T ss_pred HHHHhh
Confidence 988764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-06 Score=73.13 Aligned_cols=301 Identities=12% Similarity=0.069 Sum_probs=226.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHH-HHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT-FNSLI 184 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~ 184 (470)
++.-..-+...+...|++..|+.-|....+.+ +.+-.++..-...|...|+...|+.-+.+.++. +||-.. --.-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 44455567777888999999999999988753 334446666678899999999999999999886 676432 22234
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcc----h------------HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcc
Q 036577 185 KGLCAESRIMEAAALFTKLKAFGCEPNVI----T------------YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVV 248 (470)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~----~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 248 (470)
..+.+.|.++.|..=|+..+.+. |+.. . ....+..+.-.|+...|+.....+.+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~------ 185 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ------ 185 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC------
Confidence 56789999999999999998764 3211 1 1233455667899999999999999875
Q ss_pred cCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhH---
Q 036577 249 CEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVT--- 325 (470)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--- 325 (470)
+-|...|..-..+|...|++..|+.-++...+..- .+..++--+-..+...|+.+.++...++.++. .||...
T Consensus 186 -~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~ 261 (504)
T KOG0624|consen 186 -PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP 261 (504)
T ss_pred -cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH
Confidence 66888889999999999999999988877766532 35666777788889999999999999998876 455322
Q ss_pred -HHHH---------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHH---HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 036577 326 -FNVI---------MDELCKNGKMDEASRLLDLMIQIGVRPNAFVY---NTLMDGFCLTGRVNRAKELFVSMESNRCMHD 392 (470)
Q Consensus 326 -~~~l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 392 (470)
|-.+ +......+++.++.+-.+...+..+......| ..+-.++...|++.+|++...++++.. +.|
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~d 340 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDD 340 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chH
Confidence 2111 12234567788888888888877554333333 345566778899999999999988763 336
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 393 VFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 393 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+.++.--..+|.-...+|+|+.-|+...+.
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 888888889999999999999999988765
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-07 Score=77.78 Aligned_cols=317 Identities=14% Similarity=0.141 Sum_probs=176.9
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCcch
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNI-LINCFCKMGRVSP 160 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~ 160 (470)
+...++++|++++..-.++.|. +......+..+|....++..|-+.|+.+-.. .|...-|.. -.+.+.+.+.+.+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHH
Confidence 3445677777777777666654 6666777777777777777787777777654 454444433 3455667777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLI----KGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFE 236 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 236 (470)
|+.+...|... ++ ..+..+ ......+++..+..+.++.... .+..+.+.......+.|++++|.+-|+
T Consensus 97 ALrV~~~~~D~---~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 97 ALRVAFLLLDN---PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHHHhcCC---HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHH
Confidence 77777766532 11 112111 1223456777777777776643 245555555555667788888888887
Q ss_pred HHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-------------CH---------------
Q 036577 237 EMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP-------------NV--------------- 288 (470)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~--------------- 288 (470)
...+-++ -.....|+.-+ +..+.|+++.|++...++.++|++. |+
T Consensus 169 aAlqvsG------yqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 169 AALQVSG------YQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHhhcC------CCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 7776653 22334554433 4455677778888777777776531 11
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 036577 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG 367 (470)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (470)
..+|.-...+.+.|+++.|.+.+..|.-. ....|++|...+.-. -..+++.+..+-+.-+...++- ...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 11222223345666777777666666422 123455555544322 1234455555555555555442 44666667777
Q ss_pred HHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 368 FCLTGRVNRAKELFVSMESNRC-MHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
|++..-++.|-+++.+-..... -.+...|+.+=......-..++|.+-++.+
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7777777777666643222110 013333432222222334556666555544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8e-07 Score=80.94 Aligned_cols=236 Identities=14% Similarity=0.069 Sum_probs=160.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHH-
Q 036577 180 FNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTT- 258 (470)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 258 (470)
...+.+...+..+++.|++.+....+.. -+..-++....+|...|.+.++........+.+++ ....|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-------~rad~klI 297 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-------LRADYKLI 297 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-------HHHHHHHH
Confidence 4557777778888999999999888764 45555677778899999999988888887777643 2233333
Q ss_pred ------HHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHH
Q 036577 259 ------IIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV-VTFNVIMD 331 (470)
Q Consensus 259 ------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 331 (470)
+..+|.+.++++.+...|.+.......|+. ..+....+++....+...-. .|.. .-...-..
T Consensus 298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGN 366 (539)
T ss_pred HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHH
Confidence 334566678889999999887665433332 22334445555554443332 2222 11222255
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q 036577 332 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEG 411 (470)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 411 (470)
.+.+.|++..|+..|.++++..+. |...|+.-.-+|.+.|.+..|..-.+..++.+ ++....|..=..++....++++
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHH
Confidence 677888899999999888888744 78888888888888898888888877777764 4456666666677777788888
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 036577 412 ALSLYSEMLSKGIKPDVVIYNTLFIGLF 439 (470)
Q Consensus 412 A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (470)
|.+.|.+.++.+ |+..-+..-+.-|.
T Consensus 445 Aleay~eale~d--p~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 445 ALEAYQEALELD--PSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHHHHH
Confidence 888888888663 44443333333333
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-08 Score=89.47 Aligned_cols=250 Identities=14% Similarity=0.053 Sum_probs=141.4
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 036577 152 FCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVA 231 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a 231 (470)
+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344577777665554 222221223444556677777888766543 3333322 45555554444443333444455
Q ss_pred HHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 036577 232 LNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLL 311 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 311 (470)
+.-+++...... ...+.........++...|++++|++++... .+.......+..|.+.++++.|.+.+
T Consensus 86 l~~l~~~~~~~~-----~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l 154 (290)
T PF04733_consen 86 LEELKELLADQA-----GESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKEL 154 (290)
T ss_dssp HHHHHHCCCTS--------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhcc-----ccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHH
Confidence 554444333321 1123333333334555678888887776542 25566667777888888888888888
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 312 IEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
+.|.+.+ .| .+...+..++.. .+++.+|..+|+++.+. ..+++.+.+.++.++...|++++|.+++.+....
T Consensus 155 ~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 155 KNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8877653 23 333334444332 33577888888886554 4567777777888888888888888888777655
Q ss_pred CCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHC
Q 036577 388 RCMHDVFSYSILINGYCKNKEI-EGALSLYSEMLSK 422 (470)
Q Consensus 388 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 422 (470)
+ +-+..+...++.+....|+. +.+.+++.++...
T Consensus 231 ~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 231 D-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp --CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred c-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 4 33666777777777777776 5566677777643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.2e-09 Score=91.30 Aligned_cols=247 Identities=15% Similarity=0.123 Sum_probs=122.4
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGF 162 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 162 (470)
-.|++..++.-.+ .....+. ........+.+++...|+++.++ .++.... .|.......+...+...++-+.+.
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~-~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPE-NKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCH-HHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HhhhHHHHHHHhh-ccCCCch-hHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 3466777665555 2222221 23444555667777777766543 2333322 455555544444333323334444
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036577 163 VVLGRILRSCFTP-DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (470)
Q Consensus 163 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 241 (470)
.-++......... +..+......++...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4443333222221 2222222334455567777776666432 24445555666667777777777777777654
Q ss_pred CCCCCcccCCCHhhHHHHHHHH----HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 242 NGEIGVVCEPNTVTYTTIIDGL----CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
+ .| .+...+..++ ...+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.
T Consensus 161 ~--------eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 161 D--------ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp S--------CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred C--------Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3 12 2222222222 2233566677777776553 3456666666666666677777777666666554
Q ss_pred CCCCCHhHHHHHHHHHHHcCCH-HHHHHHHHHHHHc
Q 036577 318 GVQPNVVTFNVIMDELCKNGKM-DEASRLLDLMIQI 352 (470)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 352 (470)
+ +-+..++..++.+....|+. +.+.+.+.++...
T Consensus 231 ~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 231 D-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp --CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred c-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3 33455555555555556655 4455566665554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-06 Score=74.82 Aligned_cols=319 Identities=14% Similarity=0.152 Sum_probs=190.6
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNIL-FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPG 161 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 161 (470)
..-.+++|++++..++..+|. -...|.. .-+|.+..-++-+.+++.-.++. ++.+....+.......+.-.-..|
T Consensus 163 mR~HYQeAIdvYkrvL~dn~e---y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~a 238 (557)
T KOG3785|consen 163 MRMHYQEAIDVYKRVLQDNPE---YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTA 238 (557)
T ss_pred HHHHHHHHHHHHHHHHhcChh---hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchh
Confidence 334689999999999987654 4444544 44567888888888888877765 344555556555555454444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 036577 162 FVVLGRILRSCFTPDAVTFNSLIKGLCA-----ESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFE 236 (470)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 236 (470)
.+-...+...+-.. |- .+.-+++ -..-+.|++++-.+.+. -|. .--.++--|.+.+++.+|..+.+
T Consensus 239 e~E~k~ladN~~~~----~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~K 309 (557)
T KOG3785|consen 239 EDEKKELADNIDQE----YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCK 309 (557)
T ss_pred HHHHHHHHhccccc----ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHh
Confidence 44444444432111 11 1222222 23446677777666543 232 22344556778899999988877
Q ss_pred HHHhcCCCCCcccCCCHhhHHHHHHHHHhCC-------CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHH
Q 036577 237 EMANGNGEIGVVCEPNTVTYTTIIDGLCKEG-------FVDKAKELFLKMKDENINPNV-VTYNSLIHGFCYANDWNEAK 308 (470)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~ 308 (470)
.+. +.++.-|-.-.-.+...| ...-|.+.|+..-..+..-|. .-...+..++.-..++++.+
T Consensus 310 dl~----------PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 310 DLD----------PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred hcC----------CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 663 223333322222233333 244566666555444433222 22345566666667788888
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHH-HHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 309 CLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVY-NTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
..++.+...-...|...+| +..+++..|++.+|+++|-.+....++ |..+| ..|.++|.+++.++.|++++-.+..
T Consensus 380 ~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t- 456 (557)
T KOG3785|consen 380 TYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT- 456 (557)
T ss_pred HHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC-
Confidence 8888777654444444444 678888899999999999888766555 45555 4556788899999998877644432
Q ss_pred CCCCCHHH-HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHH
Q 036577 388 RCMHDVFS-YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIY 431 (470)
Q Consensus 388 ~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 431 (470)
+.+..+ ...+..-|.+.+.+=-|-+.|+.+... .|++.-|
T Consensus 457 --~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 457 --PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred --chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 223333 334456677888888888888877754 4444444
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-07 Score=76.98 Aligned_cols=294 Identities=13% Similarity=0.049 Sum_probs=180.9
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCC
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSF-NILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC--FCKMGR 157 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~ 157 (470)
+....++..|-..++++....|. ..-| -.-...+.+.+.+..|+++...|... ++...-..-+.+ ....++
T Consensus 54 YY~~Q~f~~AA~CYeQL~ql~P~---~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~D 127 (459)
T KOG4340|consen 54 YYRLQEFALAAECYEQLGQLHPE---LEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGD 127 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhChH---HHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhccccc
Confidence 34456788888888888877654 2222 22356677888899999988777642 222222222222 335677
Q ss_pred cchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 036577 158 VSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEE 237 (470)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 237 (470)
+..+..+++.....| +..+.+.......+.|+++.|.+-|+...+.|--.....|+..+. ..+.|+...|+++..+
T Consensus 128 l~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 128 LPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISE 203 (459)
T ss_pred CcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHH
Confidence 888888887765433 555666666677788999999999988876543334556665554 4467888999999999
Q ss_pred HHhcCCCCCcccC-------CCH---------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCCCHHHHHHH
Q 036577 238 MANGNGEIGVVCE-------PNT---------------VTYTTIIDGLCKEGFVDKAKELFLKMKDE-NINPNVVTYNSL 294 (470)
Q Consensus 238 ~~~~~~~~~~~~~-------~~~---------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l 294 (470)
+.+.|-.-..... +|+ ..+|.-...+.+.|+++.|.+.+-+|.-+ ....|++|...+
T Consensus 204 IieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 204 IIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 8887732111100 011 11333334556788888888888887543 234466666554
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHcCCC
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PNAFVYNTLMDGFCLTGR 373 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 373 (470)
.-. -..+++.+..+-+.-+...+ +-...||..++-.||+..-++.|-.++.+-.....+ .+...|+.|=....-.-.
T Consensus 284 Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~ 361 (459)
T KOG4340|consen 284 ALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTA 361 (459)
T ss_pred HHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCC
Confidence 422 23455666666666666664 445678888888899988888888777653322111 234444433222233456
Q ss_pred HHHHHHHHHHHHH
Q 036577 374 VNRAKELFVSMES 386 (470)
Q Consensus 374 ~~~A~~~~~~~~~ 386 (470)
.++|.+-++.+..
T Consensus 362 pEea~KKL~~La~ 374 (459)
T KOG4340|consen 362 PEEAFKKLDGLAG 374 (459)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766665543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-06 Score=90.68 Aligned_cols=313 Identities=13% Similarity=0.008 Sum_probs=203.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC--C----CCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC----HH
Q 036577 111 NILFGCLAKNKHYDTVLSLFKRLNSTG--L----FPD--LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD----AV 178 (470)
Q Consensus 111 ~~l~~~~~~~~~~~~A~~~~~~m~~~~--~----~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~ 178 (470)
......+...|++++|..++......- . .+. ......+...+...|++++|...++...+.-...+ ..
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 344555667899999999998775431 0 111 12223344556788999999999999876311122 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C--CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcc-cCCC
Q 036577 179 TFNSLIKGLCAESRIMEAAALFTKLKAFGCE---P--NVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVV-CEPN 252 (470)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~---~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ 252 (470)
..+.+...+...|++++|...+++....... + ...++..+...+...|++++|...+++........+.. ....
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4566677788899999999999887643111 1 12344566777889999999999998876543211100 0112
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHhHH-
Q 036577 253 TVTYTTIIDGLCKEGFVDKAKELFLKMKDE--NINP--NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQP-NVVTF- 326 (470)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~- 326 (470)
...+..+...+...|++++|...+++.... ...+ ....+..+...+...|++++|...+.+........ ....+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 334556667778889999999999887553 1112 23445556677889999999999998875421111 11111
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHH
Q 036577 327 ----NVIMDELCKNGKMDEASRLLDLMIQIGVRPN---AFVYNTLMDGFCLTGRVNRAKELFVSMESN----RCMH-DVF 394 (470)
Q Consensus 327 ----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~ 394 (470)
...+..+...|+.+.|..++........... ...+..+..++...|+.++|...+++.... +... ...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 1122445668899999999877654321111 112346777888999999999999887653 2222 234
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSKG 423 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (470)
+...+..++.+.|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 56777888999999999999999998753
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-07 Score=85.07 Aligned_cols=251 Identities=16% Similarity=0.054 Sum_probs=135.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036577 117 LAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEA 196 (470)
Q Consensus 117 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 196 (470)
+.+.|++.+|.-.|+..++.+ +.+...|..|.......++-..|+..+.+.++.. +.+..+.-.|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 445556666666666655554 4455566666666666666666666666655543 33455555555566666666666
Q ss_pred HHHHHHHHhcCC------C--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC
Q 036577 197 AALFTKLKAFGC------E--PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF 268 (470)
Q Consensus 197 ~~~~~~~~~~g~------~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (470)
++.++....... . .+...-.. ..+.....+....++|-++....+ ...|+.+...|.-.|.-.|+
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~-----~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLP-----TKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCC-----CCCChhHHhhhHHHHhcchH
Confidence 666555432210 0 00000000 122223333444455555544432 23566666666666666777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHH
Q 036577 269 VDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN-VVTFNVIMDELCKNGKMDEASRLLD 347 (470)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 347 (470)
+++|...|+.++... +-|...||-|...++...+.++|+..|.+.++. .|+ +.....|.-+|...|.+++|...|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 777777776666643 235566777776666666777777777766665 343 2344445566666777777666665
Q ss_pred HHHHc---------CCCCCHhHHHHHHHHHHcCCCHHHHHH
Q 036577 348 LMIQI---------GVRPNAFVYNTLMDGFCLTGRVNRAKE 379 (470)
Q Consensus 348 ~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 379 (470)
.++.. ...++...|..|=.++.-.++.|.+..
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 54332 112234555555555555555554433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-05 Score=72.93 Aligned_cols=148 Identities=14% Similarity=0.069 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH--------HHHHcCCCCCHhHHHHHHHHHHcCCCH
Q 036577 303 DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLD--------LMIQIGVRPNAFVYNTLMDGFCLTGRV 374 (470)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 374 (470)
.+..+.+++...-+....-.....-.++......|+++.|.+++. .+.+.+..| .+...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCC
Confidence 466777777766655322223455566778889999999999999 555554444 4556677788888887
Q ss_pred HHHHHHHHHHHHCC--CCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 036577 375 NRAKELFVSMESNR--CMH----DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAF 448 (470)
Q Consensus 375 ~~A~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 448 (470)
+.|..++...+..- -.+ -..++..++..-.+.|+-++|..+++++.+.. ++|..+...++.+|++. +.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 77877777665420 011 22233444444557899999999999999853 55788888999999876 467777
Q ss_pred HHHHHH
Q 036577 449 KLFDEM 454 (470)
Q Consensus 449 ~~~~~m 454 (470)
.+-+.+
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 665544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-06 Score=82.42 Aligned_cols=337 Identities=15% Similarity=0.099 Sum_probs=199.6
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-C-------CCCCHHHHHHHHHHH
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST-G-------LFPDLYTYNILINCF 152 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~-------~~~~~~~~~~li~~~ 152 (470)
++..|+.+.|.+-...+ .+...|..+.+.|.+.++.+-|.-.+..|... | ...+..+=.......
T Consensus 738 yvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 45678999999888777 35678999999999999998887777666432 1 111113333344445
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 036577 153 CKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVAL 232 (470)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~ 232 (470)
.+.|.+++|..+|.+-.+. ..|-..|...|.+++|.++-+.=-... =..||.....-+...++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHH
Confidence 6789999999999887653 345567788999999998765432211 1235556666666788888888
Q ss_pred HHHHHHHhcCCCC-------------CcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 233 NLFEEMANGNGEI-------------GVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 299 (470)
Q Consensus 233 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 299 (470)
+.|++.....-+. -+.-..|...|......+...|+.+.|+.+|....+ |-.+++..|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 8887642211000 000122445566666667778888888888877654 344555555
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------CCCCCHhHH--------
Q 036577 300 YANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI----------GVRPNAFVY-------- 361 (470)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~~~-------- 361 (470)
-.|+.++|-++-++ .-|......+...|...|++.+|..+|.+.... +.+ ...+
T Consensus 950 ~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~--d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK--DRLANLALMSGG 1021 (1416)
T ss_pred eccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHhhcCc
Confidence 56666666655443 224455555666666666666666665543221 111 1111
Q ss_pred -----------------HHHHHHHHcCCCHHHHHHHHHH--------HHHCCCC--CCHHHHHHHHHHHHHcCChhHHHH
Q 036577 362 -----------------NTLMDGFCLTGRVNRAKELFVS--------MESNRCM--HDVFSYSILINGYCKNKEIEGALS 414 (470)
Q Consensus 362 -----------------~~l~~~~~~~g~~~~A~~~~~~--------~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~ 414 (470)
...+..|-+.|.+.+|+++--+ ++..+.. .|+...+...+.++...++++|..
T Consensus 1022 ~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~ 1101 (1416)
T KOG3617|consen 1022 SDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVN 1101 (1416)
T ss_pred hhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHH
Confidence 1122234455555555543211 1222222 366666666666666666777666
Q ss_pred HHHHHHH--------------------------CCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHH
Q 036577 415 LYSEMLS--------------------------KGIKPDV----VIYNTLFIGLFEIHQVERAFKLFDE 453 (470)
Q Consensus 415 ~~~~~~~--------------------------~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (470)
++-..++ ++-.|+. .....+...|.++|.+..|-+-|-+
T Consensus 1102 lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1102 LLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 5543321 1112333 3555677889999999888766544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.7e-07 Score=85.97 Aligned_cols=215 Identities=17% Similarity=0.124 Sum_probs=170.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 215 YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSL 294 (470)
Q Consensus 215 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 294 (470)
-..+...+...|-...|..+|++.. .|..++.+|+..|+..+|..+..+..++ +|+...|..+
T Consensus 401 q~~laell~slGitksAl~I~Erle---------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3556677888899999999988874 4566788899999999999988887774 6888888888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCH
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRV 374 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 374 (470)
.+......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.++- -..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhh
Confidence 88887777788888888765432 1222222233478899999999988776533 567788888888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 375 NRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 454 (470)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (470)
..|.+.|....... +-+...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999998887753 4478889999999999999999999999999876 346677888888888999999999999988
Q ss_pred HH
Q 036577 455 RR 456 (470)
Q Consensus 455 ~~ 456 (470)
.+
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 74
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.6e-07 Score=83.88 Aligned_cols=262 Identities=12% Similarity=0.070 Sum_probs=194.4
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 036577 150 NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTI 229 (470)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 229 (470)
.-+.+.|++.+|.-.|+..++.. +.+...|..|.......++-..|+..+.+..+.. +-|..+...|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34578899999999999999875 5678999999999999999999999999999863 335677788888899999999
Q ss_pred HHHHHHHHHHhcCCCCCcccC--CCHhhHHHHHHHHHhCCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHccCCHHH
Q 036577 230 VALNLFEEMANGNGEIGVVCE--PNTVTYTTIIDGLCKEGFVDKAKELFLKM-KDENINPNVVTYNSLIHGFCYANDWNE 306 (470)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~ 306 (470)
+|++.++.............. ++...-.. ..+..........++|-++ ...+..+|..+...|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999998665421100000 00000000 1222222334455555444 444545677788888888999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 307 AKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
|.+.|+..+... +-|...||.|...++...+.++|+..|.+.++..+. -+.+.-.|.-.|...|.+++|.+.|-..+.
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999999875 667889999999999999999999999999997433 234445577789999999999999876543
Q ss_pred ---C------CCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 036577 387 ---N------RCMHDVFSYSILINGYCKNKEIEGALSLYS 417 (470)
Q Consensus 387 ---~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 417 (470)
+ ...++...|..|=.++.-.++.|-+.+...
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 2 122356788888888888888886665543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-06 Score=88.11 Aligned_cols=218 Identities=11% Similarity=0.052 Sum_probs=111.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHH
Q 036577 93 IFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST-GLFPD---LYTYNILINCFCKMGRVSPGFVVLGRI 168 (470)
Q Consensus 93 ~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~ 168 (470)
=|+..+...|. +...|-..|......++.+.|.++.++.+.. ++.-. .-.|..+++.-...|.-+...++|+++
T Consensus 1446 DferlvrssPN--SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1446 DFERLVRSSPN--SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHhcCCC--cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 34444444444 5555666666666666666666666665543 11111 124444444444445555555566665
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcc
Q 036577 169 LRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVV 248 (470)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 248 (470)
.+.. ..-.+|..|...|.+.+.+++|.++++.|.+. ..-....|...+..+.+..+-+.|..++.++...-+
T Consensus 1524 cqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP----- 1595 (1710)
T KOG1070|consen 1524 CQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP----- 1595 (1710)
T ss_pred HHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc-----
Confidence 5532 12234555556666666666666666665543 123445555555555555555566666555554321
Q ss_pred cCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 036577 249 CEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQP 321 (470)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 321 (470)
-........-.+..-.+.|+.+.+..+|+...... +--...|+..++.-.++|+.+.+..+|++....++.|
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 00122333334444445555555555555554431 2234455555555555555555555555555554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.1e-06 Score=75.77 Aligned_cols=219 Identities=13% Similarity=0.031 Sum_probs=100.5
Q ss_pred cCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 036577 225 TGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEG-FVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND 303 (470)
Q Consensus 225 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 303 (470)
.+..++|+.+..++.... +.+..+|+....++...| ++++++..++++..... .+..+|+.....+.+.|+
T Consensus 50 ~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCc
Confidence 344455555555555443 233344444444444444 34555555555544321 233344433333333333
Q ss_pred H--HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC---CCH----
Q 036577 304 W--NEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT---GRV---- 374 (470)
Q Consensus 304 ~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~---- 374 (470)
. ++++..++++.+.. +-+..+|+....++...|+++++++.++++++.++. |...|+.....+.+. |..
T Consensus 122 ~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccH
Confidence 2 34455555555443 334455555555555555555555555555555444 444444444333332 111
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC--------
Q 036577 375 NRAKELFVSMESNRCMHDVFSYSILINGYCKN----KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH-------- 442 (470)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------- 442 (470)
++...+...++... +-|...|+-+...+... ++..+|.+.+.+..+.++. +......|++.|+...
T Consensus 200 e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~ 277 (320)
T PLN02789 200 DSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRD 277 (320)
T ss_pred HHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhh
Confidence 23444444444432 23555555555555442 2234455555554443211 3444555555555421
Q ss_pred ----------CHHHHHHHHHHHH
Q 036577 443 ----------QVERAFKLFDEMR 455 (470)
Q Consensus 443 ----------~~~~A~~~~~~m~ 455 (470)
..++|.++++.+.
T Consensus 278 ~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 278 TVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhccccccccHHHHHHHHHHHH
Confidence 3356777777773
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-06 Score=75.45 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc---CC----HHHHH
Q 036577 271 KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN---GK----MDEAS 343 (470)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a~ 343 (470)
+++..++.+.+.+ +-|..+|+....++...|+++++++.++++++.+ +-+...|+.....+.+. |. .++.+
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 3444444444332 1244444444444444444555555554444443 22333333333333222 11 12344
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 344 RLLDLMIQIGVRPNAFVYNTLMDGFCLT----GRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
....+++...+. |...|+-+...+... +...+|...+.+....+ +.+......|++.|+.
T Consensus 204 ~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 444455544433 445555555555442 22344555555544432 2345555556665554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.1e-05 Score=69.56 Aligned_cols=367 Identities=13% Similarity=0.134 Sum_probs=217.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCcchHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK-MGRVSPGF 162 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~ 162 (470)
....++++..++++...-|. ++..|..-|....+.++++....+|.+-+.. ..+...|...+.--.+ .|+...+.
T Consensus 32 t~~~~~~R~~YEq~~~~FP~--s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r 107 (656)
T KOG1914|consen 32 TQPIDKVRETYEQLVNVFPS--SPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSYVRETKGKLFGYR 107 (656)
T ss_pred cCCHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHHHHHHccCcchHH
Confidence 34788999999999887665 7888999999999999999999999887765 3456667666643332 23333322
Q ss_pred ----HHHHHHH-hCCCCC-CHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHhcCCCCCcchHH------HHHHH
Q 036577 163 ----VVLGRIL-RSCFTP-DAVTFNSLIKGL---------CAESRIMEAAALFTKLKAFGCEPNVITYS------TLING 221 (470)
Q Consensus 163 ----~~~~~~~-~~~~~~-~~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~~g~~~~~~~~~------~l~~~ 221 (470)
+.|+-.+ +.|+.+ +-..|+..+..+ ..+.+++...++|+++...-..-=...|+ .=++.
T Consensus 108 ~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~ 187 (656)
T KOG1914|consen 108 EKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINI 187 (656)
T ss_pred HHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHH
Confidence 2233322 234332 234455555443 34445667777777776421100011111 10100
Q ss_pred H-------HhcCChHHHHHHHHHHHhcCCCC--------------------------------CcccC-CC------Hhh
Q 036577 222 L-------CRTGHTIVALNLFEEMANGNGEI--------------------------------GVVCE-PN------TVT 255 (470)
Q Consensus 222 ~-------~~~g~~~~a~~~~~~~~~~~~~~--------------------------------~~~~~-~~------~~~ 255 (470)
. -+...+-.|.++++++...-... ++... -+ ..+
T Consensus 188 ~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~ya 267 (656)
T KOG1914|consen 188 ITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYA 267 (656)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHH
Confidence 0 01122333444444332211100 00000 00 001
Q ss_pred HHHHH---------------------HHHHhCCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---ccCCH
Q 036577 256 YTTII---------------------DGLCKEGF-------VDKAKELFLKMKDENINPNVVTYNSLIHGFC---YANDW 304 (470)
Q Consensus 256 ~~~l~---------------------~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~~~~ 304 (470)
|.-.+ +.+...|+ -+++..+++.....-...+..+|..+...-- +.+..
T Consensus 268 yeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~ 347 (656)
T KOG1914|consen 268 YEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKE 347 (656)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchh
Confidence 11111 11222333 3445555555444322223333333332211 11235
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHH
Q 036577 305 NEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAKELFVS 383 (470)
Q Consensus 305 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (470)
+.....+++.......--..+|...|..-.+..-+..|..+|.++.+.+..+ ++.+.++++..++ .++.+-|.++|+.
T Consensus 348 ~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeL 426 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFEL 426 (656)
T ss_pred hhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHH
Confidence 5566666666554322233567788888888899999999999999987776 7788889998887 7899999999987
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 384 MESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV--VIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
-..+- ..+..--...++-+...++-..|..+|++.+..++.|+. .+|..++.--..-|+...+.++-+++..
T Consensus 427 GLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 427 GLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 65542 234444567788888999999999999999988666654 5999999999999999999999888764
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.88 E-value=0.00011 Score=71.54 Aligned_cols=226 Identities=15% Similarity=0.169 Sum_probs=154.7
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPG 161 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 161 (470)
+..+++..|++..+.+++..|..+...++.++ .+.+.|+.++|..+++.....+. .|..|...+-.+|.+.|+.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHH
Confidence 45678999999999999999873333344333 35689999999999998877763 4888999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC----------hHHH
Q 036577 162 FVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGH----------TIVA 231 (470)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~----------~~~a 231 (470)
..+|++..+. -|+......+..+|.+.+.+.+-.++--+|.+. .+-+...+=++++...+.-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999999986 466888888889999988876655444444332 33445555555555443221 2346
Q ss_pred HHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 036577 232 LNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFL-KMKDENINPNVVTYNSLIHGFCYANDWNEAKCL 310 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 310 (470)
.+.++.+.+.++. -.+..-.......+...|.+++|.+++. ...+.-...+...-+.-+..+...++|.+..++
T Consensus 174 ~~m~~~~l~~~gk-----~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 174 EKMVQKLLEKKGK-----IESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred HHHHHHHhccCCc-----cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 6677777665521 1222223334455667888999999984 333333333444445566777777888887777
Q ss_pred HHHHHHCC
Q 036577 311 LIEMMDQG 318 (470)
Q Consensus 311 ~~~~~~~~ 318 (470)
-.++...|
T Consensus 249 ~~~Ll~k~ 256 (932)
T KOG2053|consen 249 SSRLLEKG 256 (932)
T ss_pred HHHHHHhC
Confidence 77777665
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.6e-06 Score=84.94 Aligned_cols=234 Identities=12% Similarity=0.039 Sum_probs=134.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH
Q 036577 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 290 (470)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 290 (470)
+...|...|......++.++|.++.+++...-.... -..-...|.++++.-..-|.-+...++|+++.+. ......
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE--eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFRE--EEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch--hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 345566666666666666666666666554321000 0111234555555555556666666666666653 123345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHH
Q 036577 291 YNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PNAFVYNTLMDGFC 369 (470)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 369 (470)
|..|...|.+.+.+++|.++++.|.+.- .-....|...+..+.+..+-+.|..++.++.+.-++ -......-.+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 6666666666667777777776666542 234456666666666666666777777666654222 12333444455556
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh--HHHHHHHHHHhcCCHHHH
Q 036577 370 LTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV--IYNTLFIGLFEIHQVERA 447 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A 447 (470)
+.|+.+.++.+|+...... +--...|+..++.-.++|+.+.+..+|++.+..++.|--. .|...+.---.+|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 6777777777777766653 3356667777777777777777777777777766655432 445555444455665444
Q ss_pred HHH
Q 036577 448 FKL 450 (470)
Q Consensus 448 ~~~ 450 (470)
..+
T Consensus 1691 E~V 1693 (1710)
T KOG1070|consen 1691 EYV 1693 (1710)
T ss_pred HHH
Confidence 333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-07 Score=86.66 Aligned_cols=221 Identities=17% Similarity=0.110 Sum_probs=142.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCH
Q 036577 174 TPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNT 253 (470)
Q Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (470)
+|--..-..+...+...|-..+|..+|+++.. |...+.+|+..|+..+|..+..+..+ . +|+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le-k-------~~d~ 457 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE-K-------DPDP 457 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc-C-------CCcc
Confidence 34444445566667777777777777776643 45566677777777777777776665 2 5677
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDEL 333 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 333 (470)
..|..+++......-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.+ +....+|-....+.
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~A 529 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAA 529 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHH
Confidence 77777777666666667777776654332 11111222234567777777777666554 44556666666677
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 036577 334 CKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGAL 413 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 413 (470)
.+.++++.|.+.|.......+. +...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|+
T Consensus 530 Lqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence 7777777777777776665433 45667777777777777777777777777665 335556666666677777777777
Q ss_pred HHHHHHHH
Q 036577 414 SLYSEMLS 421 (470)
Q Consensus 414 ~~~~~~~~ 421 (470)
+.+.++.+
T Consensus 608 ~A~~rll~ 615 (777)
T KOG1128|consen 608 KAYHRLLD 615 (777)
T ss_pred HHHHHHHH
Confidence 77776654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.4e-06 Score=83.38 Aligned_cols=185 Identities=10% Similarity=-0.003 Sum_probs=128.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVV 164 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 164 (470)
.+...|+..|-+.++.++. -...|..|...|+...+...|...|++..+.+ ..+..........|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld~~--~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS--LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 3577888888888887765 56788899999988888899999999988876 56777888888999999999998887
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 165 LGRILRSCFTPD--AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 165 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
.-..-+.. +.- ...|....-.|.+.++...|+.-|+...... |.|...|..++.+|.+.|++..|+++|.++..-+
T Consensus 549 ~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 549 CLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 33332211 111 1223334445667778888888888777643 3467778888888888888888888888876644
Q ss_pred CCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 036577 243 GEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKD 281 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (470)
+.+...-.-..-.-+..|.+.+|+..+..+..
T Consensus 627 -------P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 -------PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -------cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22323222333344556777777777666543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-06 Score=75.04 Aligned_cols=189 Identities=10% Similarity=0.018 Sum_probs=126.5
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC-HhH
Q 036577 250 EPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENIN-P-NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ-PN-VVT 325 (470)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~ 325 (470)
......+..++..+...|++++|...|+++...... | ....+..+..++.+.|++++|...++++.+.... +. ...
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 556677788888888899999999999888775311 1 1245677788888889999999999988876311 11 113
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036577 326 FNVIMDELCKN--------GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYS 397 (470)
Q Consensus 326 ~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (470)
+..+..++.+. |+.++|.+.++.+.+..+. +...+..+..... ... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 44555555554 6778888888888776433 2222222211110 000 00 01122
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 398 ILINGYCKNKEIEGALSLYSEMLSKGI-KP-DVVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
.+...|.+.|++++|+..+++.++... .| ....+..+..++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566778899999999999999987632 12 3468889999999999999999999888753
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-06 Score=72.54 Aligned_cols=148 Identities=13% Similarity=0.150 Sum_probs=112.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 036577 260 IDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKM 339 (470)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 339 (470)
+..|...|+++.+....+.+... . ..+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 45678888888875554332221 1 12223667788888888877765 67788888888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHH-HcCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 036577 340 DEASRLLDLMIQIGVRPNAFVYNTLMDGF-CLTGR--VNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLY 416 (470)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (470)
++|...+++..+..+. +...+..+..++ ...|+ .++|.+++++..+.+ +.+...+..+...+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999888655 777888888764 66676 489999999988875 447888888888999999999999999
Q ss_pred HHHHHC
Q 036577 417 SEMLSK 422 (470)
Q Consensus 417 ~~~~~~ 422 (470)
+++++.
T Consensus 168 ~~aL~l 173 (198)
T PRK10370 168 QKVLDL 173 (198)
T ss_pred HHHHhh
Confidence 998875
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-06 Score=71.11 Aligned_cols=158 Identities=15% Similarity=0.048 Sum_probs=83.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 111 NILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAE 190 (470)
Q Consensus 111 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (470)
..+...+...|+-+....+.....-. .+.|......++....+.|++..|...+.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444444455555554444443221 13344444445555556666666666665555432 45555666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHH
Q 036577 191 SRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVD 270 (470)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 270 (470)
|+++.|..-|.+..+.. +-+....+.+.-.+.-.|+.+.|..++....... ..|..+-..+.......|+++
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-------~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-------AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-------CCchHHHHHHHHHHhhcCChH
Confidence 66666666555555431 2234455555555555566666666665555443 335555555555555566666
Q ss_pred HHHHHHHH
Q 036577 271 KAKELFLK 278 (470)
Q Consensus 271 ~a~~~~~~ 278 (470)
+|.++...
T Consensus 220 ~A~~i~~~ 227 (257)
T COG5010 220 EAEDIAVQ 227 (257)
T ss_pred HHHhhccc
Confidence 55555433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-05 Score=80.75 Aligned_cols=240 Identities=10% Similarity=0.058 Sum_probs=166.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 104 PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSL 183 (470)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (470)
|.+..+|..|+..+...+++++|.++.+...+.. +.....|-.+...+.+.++.+++..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 3578899999999999999999999999777653 33344454555566667765554433 33
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHH
Q 036577 184 IKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGL 263 (470)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 263 (470)
+.......++..+.-++..|.+.+ -+..++..+..+|-+.|+.++|..+++++.+.+ +.|+.+.|.+...|
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n~~aLNn~AY~~ 160 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDNPEIVKKLATSY 160 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHH
Confidence 444444555555555556666643 455688889999999999999999999999887 67889999999999
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 036577 264 CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 343 (470)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 343 (470)
... +.++|.+++.+.... +...+++.++.++|.++.... +.+...+..+
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i-------------- 209 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRI-------------- 209 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHH--------------
Confidence 999 999999999887664 666778888888888888763 2222222222
Q ss_pred HHHHHHHHc-CCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036577 344 RLLDLMIQI-GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYC 404 (470)
Q Consensus 344 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (470)
.+.+... +..--..++-.+-..|...++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 210 --~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 210 --ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred --HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 2222221 112233445556666777788888888888888764 336666666776665
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.3e-06 Score=70.25 Aligned_cols=156 Identities=13% Similarity=0.046 Sum_probs=79.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT 371 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (470)
..+-..+...|+-+....+........ +.|.......+....+.|++.+|...+.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 334444445555555555444433221 3333444445555555555555555555555543 23555555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 036577 372 GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
|+++.|..-|.+..+.. +-+...++.+...|.-.|+.+.|..++......+.. |..+-..|..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 55555555555555432 224444555555555555555555555555543222 4444445555555555555555543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.5e-07 Score=73.57 Aligned_cols=127 Identities=13% Similarity=0.190 Sum_probs=108.9
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--cc
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF-CKMGR--VS 159 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~--~~ 159 (470)
..++.+++...++..++.+|. +...|..+...|...|++++|+..|++..+.. +.+...+..+..++ ...|+ .+
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~--~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcH
Confidence 466789999999999998887 99999999999999999999999999999876 66788888888864 67777 58
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcch
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVIT 214 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 214 (470)
+|.+++++.++.. +.+..++..+...+...|++++|+..|+++.+.. +|+..-
T Consensus 128 ~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r 180 (198)
T PRK10370 128 QTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccH
Confidence 9999999999975 5577889999999999999999999999998764 444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-06 Score=74.21 Aligned_cols=100 Identities=14% Similarity=0.051 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC--HHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL---YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD--AVTF 180 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~ 180 (470)
....+..++..+...|++++|...|+++.... +.+. .++..+..++...|++++|...++++.+...... ..++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45555666666666666777766666665542 2121 3455566666666666667666666665421111 1133
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhc
Q 036577 181 NSLIKGLCAE--------SRIMEAAALFTKLKAF 206 (470)
Q Consensus 181 ~~l~~~~~~~--------g~~~~a~~~~~~~~~~ 206 (470)
..+..++... |+.++|.+.|+++...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 4444444433 5566677777766654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-06 Score=84.69 Aligned_cols=168 Identities=11% Similarity=0.050 Sum_probs=135.2
Q ss_pred HHHHHHHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 036577 66 LEKFLRERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTY 145 (470)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 145 (470)
+.+.+.+.+...+..+....++.+++.+ .+.++. ++.++-.|..+..+.|++++|..+++...+.. +.+....
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~ 123 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDY----VRRYPH--TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAF 123 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHH----HHhccc--cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHH
Confidence 4444555565665554444444444443 444454 78999999999999999999999999999874 5566788
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 036577 146 NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRT 225 (470)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 225 (470)
..+...+.+.+++++|+...++.++.. +.+......+..++.+.|++++|..+|+++... .+-+..++..+..++...
T Consensus 124 ~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 124 ILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRR 201 (694)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHc
Confidence 889999999999999999999999875 556778888899999999999999999999974 334578899999999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 036577 226 GHTIVALNLFEEMANGN 242 (470)
Q Consensus 226 g~~~~a~~~~~~~~~~~ 242 (470)
|+.++|...|++..+..
T Consensus 202 G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 202 GALWRARDVLQAGLDAI 218 (694)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999998775
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.2e-08 Score=56.21 Aligned_cols=32 Identities=56% Similarity=0.911 Sum_probs=17.2
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 423 GIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 454 (470)
Q Consensus 423 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (470)
|+.||..+|+.|+.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.3e-06 Score=81.64 Aligned_cols=369 Identities=13% Similarity=0.052 Sum_probs=208.4
Q ss_pred HHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 036577 72 ERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTYNILIN 150 (470)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~ 150 (470)
..|.+.|..++...+...|.+.|+.+.+.++. +..++......|+...+++.|..+.-..-+.. ...-...|....-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 34455566666666889999999999998887 89999999999999999999999843322221 0011223444556
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHH--HHHHHHhcCCh
Q 036577 151 CFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYST--LINGLCRTGHT 228 (470)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~--l~~~~~~~g~~ 228 (470)
.|.+.++...|..-|+..++.. +.|...|..++.+|.+.|++..|.++|.+.... .|+. .|.. ....-+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhH
Confidence 6778889999999999998875 568889999999999999999999999998764 3432 2222 22345678999
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHH-------HHhCCCCCCHHHHHHHHHH----
Q 036577 229 IVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLK-------MKDENINPNVVTYNSLIHG---- 297 (470)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-------~~~~~~~~~~~~~~~li~~---- 297 (470)
.+|+..+................-..++-.+...+.-.|-..++...+++ ...+....+...|-.+-++
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 99999888876543210000011122232222222223332333333322 2222111122222221111
Q ss_pred -------------------HHccCCH---H---HHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----c----CCHHHHHH
Q 036577 298 -------------------FCYANDW---N---EAKCLLIEMMDQGVQPNVVTFNVIMDELCK----N----GKMDEASR 344 (470)
Q Consensus 298 -------------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----g~~~~a~~ 344 (470)
.-..+.. + -+.+.+-.-.+ ...+..+|..++..|.+ . .+...|+.
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~ 804 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIR 804 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHH
Confidence 1111111 1 01111111111 12234555555554443 1 12346777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 036577 345 LLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGI 424 (470)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 424 (470)
.+...++..-. +..+|+.|.-. ...|++.-|...|-.-.... +....+|..+...+.+..+++-|...|...+...+
T Consensus 805 c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP 881 (1238)
T KOG1127|consen 805 CCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP 881 (1238)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCc
Confidence 77777766433 66677766655 55566666666665444432 33556666666666666677777776666654321
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 036577 425 KPDVVIYNTLFIGLFEIHQVERAFKLFD 452 (470)
Q Consensus 425 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (470)
. |...|-.........|+.-++..+|.
T Consensus 882 ~-nl~~WlG~Ali~eavG~ii~~~~lfa 908 (1238)
T KOG1127|consen 882 L-NLVQWLGEALIPEAVGRIIERLILFA 908 (1238)
T ss_pred h-hhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1 33444433333334454444444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00013 Score=67.07 Aligned_cols=361 Identities=13% Similarity=0.147 Sum_probs=210.0
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCC
Q 036577 95 DYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFT 174 (470)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 174 (470)
++-++.+|. |..+|+.|++-+..+ .++++.+.++++... .+-....|..-+..-....+++....+|.+.+.. .
T Consensus 10 ~~rie~nP~--di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--v 83 (656)
T KOG1914|consen 10 RERIEENPY--DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--V 83 (656)
T ss_pred HHHHhcCCc--cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--H
Confidence 555566776 999999999988766 999999999999876 3566778999999999999999999999998876 3
Q ss_pred CCHHHHHHHHHHHHh-cCCHHHH----HHHHHH-HHhcCCCCC-cchHHHHHHH---------HHhcCChHHHHHHHHHH
Q 036577 175 PDAVTFNSLIKGLCA-ESRIMEA----AALFTK-LKAFGCEPN-VITYSTLING---------LCRTGHTIVALNLFEEM 238 (470)
Q Consensus 175 ~~~~~~~~l~~~~~~-~g~~~~a----~~~~~~-~~~~g~~~~-~~~~~~l~~~---------~~~~g~~~~a~~~~~~~ 238 (470)
.+...|...+.--.+ .|+...+ .+.|+- +.+.|..+- ...|+..+.- |....+++...++|+++
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 456666665553332 2332222 222332 233443332 2234444432 33444667788888888
Q ss_pred HhcCCCCCcccCCCHhhHHHHHHHH-------HhCCCHHHHHHHHHHHHh--CCCCCCH---------------HHHHHH
Q 036577 239 ANGNGEIGVVCEPNTVTYTTIIDGL-------CKEGFVDKAKELFLKMKD--ENINPNV---------------VTYNSL 294 (470)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~g~~~~a~~~~~~~~~--~~~~~~~---------------~~~~~l 294 (470)
....-..-...-.|-..|..-|+.. -+...+-.|.++++++.. +|...+. ..|..+
T Consensus 164 l~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~ 243 (656)
T KOG1914|consen 164 LVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNW 243 (656)
T ss_pred hcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHH
Confidence 7533100000000111121111111 123345566666666543 1221111 112222
Q ss_pred HHH-------------------------------------------------HHccCC-------HHHHHHHHHHHHHCC
Q 036577 295 IHG-------------------------------------------------FCYAND-------WNEAKCLLIEMMDQG 318 (470)
Q Consensus 295 i~~-------------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~ 318 (470)
|.- +...|+ -+++..+++.....-
T Consensus 244 I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l 323 (656)
T KOG1914|consen 244 IKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL 323 (656)
T ss_pred HHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 211 111111 122333333322211
Q ss_pred CCCCHhHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHH
Q 036577 319 VQPNVVTFNVIMDELCKN---GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMH-DVF 394 (470)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~ 394 (470)
..-+..+|..+.+.--.. ...+.....++++...-..--..+|..+++...+..-++.|+.+|.+..+.+..+ ++.
T Consensus 324 ~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVf 403 (656)
T KOG1914|consen 324 LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVF 403 (656)
T ss_pred HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhh
Confidence 111222222222211111 1244455555555544222233568888888889999999999999999887666 788
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADT 463 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 463 (470)
.+++++.-|| .++.+-|.++|+--+.+ +..+..--...++-+...++-..|..+|++....++.||.
T Consensus 404 Va~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 404 VAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 8888888766 57889999999987664 2223444456778888889999999999999987777663
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-08 Score=55.40 Aligned_cols=32 Identities=44% Similarity=0.943 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 388 RCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 388 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56778888888888888888888888888776
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-06 Score=68.13 Aligned_cols=108 Identities=8% Similarity=-0.065 Sum_probs=75.6
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 036577 309 CLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
.++++..+. .|+ .+......+...|++++|...|.......+. +...|..+..++...|++++|...|++....+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555544 233 3445666777777888888777777776543 66777777777777788888888887777654
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 389 CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+.+...+..+..++...|++++|+..|+..++.
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 447777777777777778888888887777754
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.4e-05 Score=72.79 Aligned_cols=188 Identities=18% Similarity=0.216 Sum_probs=120.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhC
Q 036577 187 LCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKE 266 (470)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 266 (470)
....+-+++|..+|++.. .+..+.+.++.- -+..+.|.++-++.. .+.+|+.+..+-.+.
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------------~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------------EPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------------ChHHHHHHHHHHHhc
Confidence 334444555555555542 233444444432 344444544443332 346788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 036577 267 GFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 346 (470)
Q Consensus 267 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 346 (470)
|.+.+|.+.|-+. .|+..|..+++...+.|.|++-.+.+....+..-.|.. =+.++-+|++.++..+..+++
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh
Confidence 8888888777433 26677888888888888888888888777776555544 356788888888877655543
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 036577 347 DLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSE 418 (470)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 418 (470)
..||......+.+-|...|.++.|.-+|..+ ..|..|...+...|+++.|...-++
T Consensus 1190 -------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1190 -------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred -------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2456666677777777777777777666533 3466666666666776666654443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-05 Score=77.24 Aligned_cols=182 Identities=6% Similarity=0.009 Sum_probs=124.7
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 036577 208 CEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN 287 (470)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 287 (470)
.+.+...+..|.....+.|..++|+.+++...+.. +.+......++.++.+.+++++|+..++...... +-+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-------Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~ 153 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-------PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSS 153 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCC
Confidence 34567778888888888888888888888888765 5566777788888888888888888888888764 335
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 036577 288 VVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG 367 (470)
Q Consensus 288 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (470)
......+..++.+.|++++|.++|++....+ +-+..++..+..++-..|+.++|...|+...+.. .+....|+.++
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~-- 229 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL-- 229 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH--
Confidence 6666777777888888888888888888743 4456778888888888888888888888887763 22444444433
Q ss_pred HHcCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHH
Q 036577 368 FCLTGRVNRAKELFVSMESNR----CMHDVFSYSILINGYCK 405 (470)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 405 (470)
+++..-...++++.-.+ .+..+.+...++.-|.+
T Consensus 230 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 230 ----VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred ----HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 33344445555543322 22233444445544444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-05 Score=65.61 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=45.5
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCC
Q 036577 298 FCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGR 373 (470)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (470)
+.+..+.+-|...+++|.+.. +..+.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+..+.++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 334444444444444444321 22333333333332 22344455555554442 23444444555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036577 374 VNRAKELFVSMESNRCMHDVFSYSILINGYCKNKE 408 (470)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (470)
+++|..+++....+. ..++.+...++.+-...|.
T Consensus 223 ~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD-AKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence 555555555544442 2234444444443333443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2e-05 Score=78.83 Aligned_cols=154 Identities=11% Similarity=0.063 Sum_probs=92.7
Q ss_pred CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 036577 252 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMD 331 (470)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 331 (470)
+...+..+..+|-+.|+.++|..+++++.+.. +-|..+.|.+...|... +.++|..++.+....
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------
Confidence 33456666666666666666666666666654 34566666666666666 666666666555432
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q 036577 332 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEG 411 (470)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 411 (470)
+...+++..+.++|.++....+. +...+..+.+.....- +..--..++-.+-..|-..+++++
T Consensus 179 -~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~---------------~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 179 -FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR---------------EFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred -HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh---------------ccchhHHHHHHHHHHHhhhhhhhH
Confidence 44455666666666666665332 2323322222222111 112234456666777888999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 036577 412 ALSLYSEMLSKGIKPDVVIYNTLFIGLF 439 (470)
Q Consensus 412 A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (470)
++.+++..++.... |.....-++..|.
T Consensus 242 ~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 242 VIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 99999999976443 5556667777665
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.5e-05 Score=67.84 Aligned_cols=117 Identities=18% Similarity=0.175 Sum_probs=70.1
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHH
Q 036577 298 FCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 377 (470)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 377 (470)
+...|++++|+..+..+.+.. +.|+..+......+.+.++.++|.+.++.+....+. .....-.+.+++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHH
Confidence 445666666666666665552 334444455556666667777777777666665322 144455566666666777766
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 036577 378 KELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYS 417 (470)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 417 (470)
+.+++...... +.|...|..|.++|...|+..++..-..
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 66666665543 4466666666666666666555554433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.5e-06 Score=64.49 Aligned_cols=121 Identities=10% Similarity=-0.016 Sum_probs=90.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036577 274 ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG 353 (470)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 353 (470)
.+++...+. .|+ .+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555554 233 35556777888899999999988888775 5577788888888889999999999999988876
Q ss_pred CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036577 354 VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILIN 401 (470)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (470)
+. +...+..+..++...|+.++|...|+..++.. +.+...|.....
T Consensus 89 p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~ 134 (144)
T PRK15359 89 AS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQN 134 (144)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 54 77888888888888999999999998888764 334555544433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.5e-05 Score=62.07 Aligned_cols=249 Identities=14% Similarity=0.092 Sum_probs=161.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHH
Q 036577 185 KGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC 264 (470)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (470)
+-+.-.|.+..++..-...... +.+...-..+-++|...|.+..... ++.... .|.......+.....
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-------~~~lqAvr~~a~~~~ 83 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-------ATPLQAVRLLAEYLE 83 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-------CChHHHHHHHHHHhh
Confidence 3344467777766655554432 1334444455667777776544332 222111 233344444444444
Q ss_pred hCCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 036577 265 KEGFVDKAK-ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 343 (470)
Q Consensus 265 ~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 343 (470)
.-++.+.-. ++.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+.+-|.
T Consensus 84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~ 157 (299)
T KOG3081|consen 84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAE 157 (299)
T ss_pred CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433 344445444333343444444567889999999999887622 2333333456678888999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 344 RLLDLMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
+.++.|.+.. +..|.+-|..++.+ .+.+.+|.-+|++|.++ .+|+..+.+....++...|++++|..++++.
T Consensus 158 ~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 158 KELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 9999998753 56777777777653 45689999999999875 4889999999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 036577 420 LSKGIKPDVVIYNTLFIGLFEIHQVER-AFKLFDEMRR 456 (470)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 456 (470)
+.+..+ ++.+...++..-...|...+ ..+.+.++..
T Consensus 234 L~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 234 LDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 987555 66677777766666676544 4555666654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.6e-06 Score=65.87 Aligned_cols=117 Identities=14% Similarity=0.067 Sum_probs=93.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036577 93 IFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 172 (470)
Q Consensus 93 ~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 172 (470)
.|+.++...|. +......+...+.+.|++++|.+.|+.+...+ +.+...+..+..++...|++++|..+++...+.+
T Consensus 5 ~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE--QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56667776665 56667788888889999999999999988765 5677888888999999999999999999888764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchH
Q 036577 173 FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITY 215 (470)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 215 (470)
+.+...+..+..+|...|++++|.+.|++..+.. |+...+
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 121 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEIC--GENPEY 121 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccchH
Confidence 5567778888889999999999999998888753 554443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00027 Score=67.41 Aligned_cols=109 Identities=21% Similarity=0.259 Sum_probs=72.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEI 409 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (470)
+.+......+.+|+.+++.+...+. -...|..+.+.|+..|+++.|+++|-+.- .++-.|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3344556677777777777766533 23446677788888888888888875432 345567788888888
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 036577 410 EGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
+.|.++-++.. |.......|..-..-+-++|++.+|.+++
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 88888766654 44444555655555566677776666544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00031 Score=69.35 Aligned_cols=305 Identities=15% Similarity=0.148 Sum_probs=177.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVV 164 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 164 (470)
+-+++|..+|.... .+..+.+.|+.-. +..++|.+.-++.. .+..|..+..+-.+.|.+.+|.+-
T Consensus 1062 ~LyEEAF~ifkkf~------~n~~A~~VLie~i---~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFD------MNVSAIQVLIENI---GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred hHHHHHHHHHHHhc------ccHHHHHHHHHHh---hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHH
Confidence 34566666665542 2444455554432 45555555444332 345677777777777777777665
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 036577 165 LGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGE 244 (470)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 244 (470)
|-+ ..|+..|.-+++...+.|.+++-.+.+....+..-+|. .-..++-+|++.++..+..+++
T Consensus 1127 yik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi--------- 1189 (1666)
T KOG0985|consen 1127 YIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI--------- 1189 (1666)
T ss_pred HHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh---------
Confidence 543 23566677777777777777777777766665543333 3346677777777766554432
Q ss_pred CCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh
Q 036577 245 IGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVV 324 (470)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 324 (470)
..||......+.+-|...|.++.|.-+|.. +.-|..|...+...|++..|.+.-++ ..+..
T Consensus 1190 ----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRK------Ans~k 1250 (1666)
T KOG0985|consen 1190 ----AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARK------ANSTK 1250 (1666)
T ss_pred ----cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhh------ccchh
Confidence 245666666777777777777777766643 33466677777777777777665443 23566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYC 404 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (470)
+|-.+-.+|...+.+..| +|-..++-....-...++..|-..|-+++.+.+++...... ......|+.|.-.|.
T Consensus 1251 tWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHH
Confidence 777777777766555433 22222233344556678888888888888888877654321 124455666666666
Q ss_pred HcCChhHHHHHHHHHHHC-CCC------CCHhHHHHHHHHHHhcCCHHHH
Q 036577 405 KNKEIEGALSLYSEMLSK-GIK------PDVVIYNTLFIGLFEIHQVERA 447 (470)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~-~~~------p~~~~~~~l~~~~~~~g~~~~A 447 (470)
+- ++++..+.++-.-.+ +++ .....|..+.-.|.+-..++.|
T Consensus 1325 ky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1325 KY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred hc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 54 344444433332211 110 1234566666666555555554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.1e-05 Score=71.16 Aligned_cols=109 Identities=20% Similarity=0.322 Sum_probs=60.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 219 INGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGF 298 (470)
Q Consensus 219 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 298 (470)
+.+......+.+|+.+++.+..+. .-...|..+.+-|...|+++.|.++|-+.- .++-.|.+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--------~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my 801 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--------TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMY 801 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--------cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHH
Confidence 344455666677777766665443 223345556666677777777776664321 234456667
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 036577 299 CYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 346 (470)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 346 (470)
.+.|+|++|.++-++.... ......|-+-..-.-.+|++.+|.+++
T Consensus 802 ~k~~kw~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred hccccHHHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 7777777776665554321 223334444444455555555555544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00015 Score=60.19 Aligned_cols=164 Identities=14% Similarity=0.120 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHH
Q 036577 180 FNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTI 259 (470)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (470)
|..++-+....|+.+.|..+++++... ++-+..+-..-.-.+-..|++++|+++++.+.+.+ +.|.+++-.-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-------pt~~v~~KRK 126 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-------PTDTVIRKRK 126 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-------cchhHHHHHH
Confidence 445555566677777777777776654 22222222222223344677777777777777665 5566666666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc---
Q 036577 260 IDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN--- 336 (470)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 336 (470)
+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++-.. |.++..+..+...+.-.
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~ 204 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGA 204 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhH
Confidence 66666666666666666666554 44567777777777777777777777777776553 33444444444443322
Q ss_pred CCHHHHHHHHHHHHHcC
Q 036577 337 GKMDEASRLLDLMIQIG 353 (470)
Q Consensus 337 g~~~~a~~~~~~~~~~~ 353 (470)
.+.+.+.+.|.+.++..
T Consensus 205 eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 205 ENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 24555666666666653
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-05 Score=72.90 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=52.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCcchHHH
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~ 163 (470)
|++++|++.++.++...|. |+..+......+.+.++.++|.+.++++... .|+ ....-.+.+++.+.|++.+|..
T Consensus 320 ~~~d~A~~~l~~L~~~~P~--N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 320 GQYDEALKLLQPLIAAQPD--NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred cccchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 3444555555554444443 4444444445555555555555555555443 222 3333444445555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036577 164 VLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALF 200 (470)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 200 (470)
++++..... +.|...|..|.++|...|+..++....
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 554444332 334445555555555555544444433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00012 Score=70.44 Aligned_cols=240 Identities=15% Similarity=0.099 Sum_probs=158.3
Q ss_pred CHHHHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC-C-------C-C
Q 036577 106 PVSSFNILFG--CLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS-C-------F-T 174 (470)
Q Consensus 106 ~~~~~~~l~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~-------~-~ 174 (470)
|..+-..++. .|...|+.+.|.+-.+-+.. ...|..+...|.+..+++-|.-.+..|... | . .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 5556666654 46678999999877766543 468999999999999888887776666431 1 1 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHh
Q 036577 175 PDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTV 254 (470)
Q Consensus 175 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (470)
++ ..-.-..-.....|.+++|+.+|.+-+.. ..|=..|...|.+++|.++-+.-.... -..
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~ 859 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---------LRN 859 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---------hhh
Confidence 21 22222333445689999999999998863 344556777999999998866433221 234
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCC-------------------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036577 255 TYTTIIDGLCKEGFVDKAKELFLKMKDEN-------------------INPNVVTYNSLIHGFCYANDWNEAKCLLIEMM 315 (470)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (470)
||.....-+...++.+.|++.|++..... -..|...|..-....-..|+.+.|+.+|....
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 66667777777888898888887643210 01133334444444555666777766665543
Q ss_pred HCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 316 DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
-|-+++...|-.|+.++|-++-++-. |....-.|.+.|-..|++.+|..+|.+..
T Consensus 940 ---------D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 940 ---------DYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---------hhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 24556667777788888877665532 44555568888888888888888887654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-05 Score=63.14 Aligned_cols=97 Identities=16% Similarity=0.119 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
.....+...+...|++++|...++.+...+.. +...+..+...+...|++++|..+++.....+ +.+...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 33444555566666666666666666555432 55556666666666666666666666655543 33555555566666
Q ss_pred HHcCChhHHHHHHHHHHHC
Q 036577 404 CKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~ 422 (470)
...|++++|...|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00068 Score=56.41 Aligned_cols=128 Identities=13% Similarity=-0.001 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 111 NILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAE 190 (470)
Q Consensus 111 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (470)
..++-+....|+.+.|...++.+..+- +.+..+-..-.-.+-..|++++|.++++.+++.. +.|..++-.-+...-..
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 333444444455555555555544431 2122221111222333445555555555555443 33344444444444444
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036577 191 SRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (470)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 241 (470)
|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 134 GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred CCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 4444444444444332 2334455555555555555555555555555443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.5e-05 Score=58.75 Aligned_cols=126 Identities=11% Similarity=0.045 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPN--AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHD--VFSYSILIN 401 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~ 401 (470)
|..++..+ ..++...+...++.+.+....-. ....-.+...+...|++++|...|+.+......++ ......+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33444443 35666666666666666533211 12223344566667777777777777766542221 123344566
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 402 GYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 454 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (470)
.+...|++++|+..++..... ......+....+.+.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666777777777777553322 223345555667777777777777777653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.2e-05 Score=68.92 Aligned_cols=126 Identities=18% Similarity=0.174 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDEL 333 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 333 (470)
.....++..+...++++.|.++++++.+.. |+ ....++..+...++..+|.+++++..+.. +-+...+..-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344555666666777888888888877763 44 33446666767777777777777777553 44555566666667
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 334 CKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
.+.++++.|..+.+++.+..+. +..+|..|..+|.+.|+++.|...++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777778888888777776432 45677777888888888888777766554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0058 Score=60.05 Aligned_cols=225 Identities=13% Similarity=0.137 Sum_probs=156.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036577 118 AKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC--FCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIME 195 (470)
Q Consensus 118 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (470)
...+++..|+....++.+. .|+. .|...+.+ +.+.|+.++|..+++.....+.. |..+...+-.+|.+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4568999999999998876 3544 23333333 56899999999999887766533 88899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC-------
Q 036577 196 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF------- 268 (470)
Q Consensus 196 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------- 268 (470)
|..+|++.... .|+......+..+|.+.+++.+-.+.--++-+. .+.+...+=++++.+...-.
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-------~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-------FPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCcccchHHHHHHHHHHhccCCccccc
Confidence 99999999864 477777888888999988887644444344332 24455666666666554321
Q ss_pred ---HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHH-HHHHCCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 036577 269 ---VDKAKELFLKMKDEN-INPNVVTYNSLIHGFCYANDWNEAKCLLI-EMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 343 (470)
Q Consensus 269 ---~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 343 (470)
..-|.+.++.+.+.+ .-.+..-...-.......|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 234666777776653 22222222233344567889999999994 3333333334445556677888899999999
Q ss_pred HHHHHHHHcCCC
Q 036577 344 RLLDLMIQIGVR 355 (470)
Q Consensus 344 ~~~~~~~~~~~~ 355 (470)
++-.++...|..
T Consensus 247 ~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 247 ELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHhCCc
Confidence 999999988644
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.5e-05 Score=58.47 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=77.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--hHHHHHH
Q 036577 291 YNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN---VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA--FVYNTLM 365 (470)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 365 (470)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 34444444 3677777777777776653 222 122333445677777888888888877776533321 2344466
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 366 DGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
..+...|++++|...++..... ......+....+.|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777778888888777654332 234556667777788888888888777654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.2e-06 Score=48.93 Aligned_cols=33 Identities=45% Similarity=0.707 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 036577 430 IYNTLFIGLFEIHQVERAFKLFDEMRRDGVAAD 462 (470)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 462 (470)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.5e-05 Score=68.07 Aligned_cols=123 Identities=16% Similarity=0.150 Sum_probs=67.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 036577 291 YNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL 370 (470)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (470)
...|+..+...++++.|..+++++.+.. |+. ...++..+...++..+|.+++.+.++.... +...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 3344455555566666666666666552 332 233455555555666666666666554322 45555555555566
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 371 TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
.++.+.|..+.+++.... +-+..+|..|..+|...|++++|+..++.+
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 666666666666655542 224446666666666666666666555544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0011 Score=59.10 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=61.5
Q ss_pred HHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 71 RERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 150 (470)
++...-.+....+..++.+|+..+..+....|. ++..|..-+..+...|++++|.--.+.-.+.. +-........-+
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd--~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~ 125 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPD--NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQ 125 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCcc--chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhh
Confidence 344455566677788999999999999999887 78888888888889999999887776655442 112223333444
Q ss_pred HHHhcCCcchHHHHH
Q 036577 151 CFCKMGRVSPGFVVL 165 (470)
Q Consensus 151 ~~~~~g~~~~a~~~~ 165 (470)
++...++..+|.+.+
T Consensus 126 c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKL 140 (486)
T ss_pred hhhhhHHHHHHHHHh
Confidence 444444444444433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.1e-06 Score=46.95 Aligned_cols=32 Identities=34% Similarity=0.579 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 036577 430 IYNTLFIGLFEIHQVERAFKLFDEMRRDGVAA 461 (470)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 461 (470)
+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55666666666666666666666666666555
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.9e-06 Score=47.40 Aligned_cols=33 Identities=52% Similarity=1.016 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 427 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 427 (470)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888876
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.9e-06 Score=46.16 Aligned_cols=33 Identities=33% Similarity=0.669 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 036577 394 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKP 426 (470)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 426 (470)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00012 Score=52.76 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 036577 361 YNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE 440 (470)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (470)
+..++..+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.++...+.... +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 3344555556666666666666665543 223355556666666666666666666666654221 33455566666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 036577 441 IHQVERAFKLFDEMRR 456 (470)
Q Consensus 441 ~g~~~~A~~~~~~m~~ 456 (470)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6777777666666654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00019 Score=58.43 Aligned_cols=117 Identities=11% Similarity=-0.036 Sum_probs=79.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCcchHH
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFP--DLYTYNILINCFCKMGRVSPGF 162 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 162 (470)
.++..+...+..+.+..+.......|..+...+...|++++|+..|++.......+ ...++..+..++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 34555666666665444442346677888888888999999999999887653222 2357888888889999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH-------hcCCHHHHHHHHHH
Q 036577 163 VVLGRILRSCFTPDAVTFNSLIKGLC-------AESRIMEAAALFTK 202 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~a~~~~~~ 202 (470)
+.+++.++.. +.....+..+...+. ..|+++.|+..+++
T Consensus 93 ~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 93 EYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9998888753 334455666666666 66666655444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.5e-06 Score=57.81 Aligned_cols=82 Identities=16% Similarity=0.327 Sum_probs=53.5
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
.|++++|+.+|+.+....|..++...+..+..++.+.|++++|+.+++. .+.+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3677888888888887776412444555678888888888888888877 3222 1223444455677777788888777
Q ss_pred HHHH
Q 036577 164 VLGR 167 (470)
Q Consensus 164 ~~~~ 167 (470)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0002 Score=61.11 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=96.1
Q ss_pred HHHHHHHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 036577 66 LEKFLRERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTY 145 (470)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 145 (470)
....+++.++..|....+.+++++|+..|..+++..|. ++..|..-..+|.+.|.++.|++-.+..+..+ +.-..+|
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay 152 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAY 152 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHH
Confidence 35566778888888888999999999999999999887 88889999999999999999999999888875 4456689
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHH
Q 036577 146 NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLI 184 (470)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (470)
..|..+|...|++++|.+.|.+.+.. .|+-.+|-.=+
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHhhhcc--CCCcHHHHHHH
Confidence 99999999999999999999998875 66666654433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00015 Score=66.73 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=70.8
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH
Q 036577 209 EPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV 288 (470)
Q Consensus 209 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 288 (470)
+.+......+++.+....+.+++..++.+....... ...-..|..++++.|.+.|..+.++.++..=...|+-||.
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~----~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNC----SYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccc----ccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 344455555555555555666666666665544321 1122234456666666666666666666666666666666
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH
Q 036577 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK 335 (470)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 335 (470)
.+++.|++.+.+.|++..|.++...|..++...+..++...+.+|.+
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666666666666665555555555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.4e-05 Score=69.05 Aligned_cols=90 Identities=7% Similarity=-0.051 Sum_probs=75.2
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 036577 80 GDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 80 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
..+..|++++|+..|+.+++..|. +...|..+..++.+.|++++|+..+++++... +.+...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN--NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 345567899999999999988876 78888888888999999999999999888875 556778888888888999999
Q ss_pred hHHHHHHHHHhCC
Q 036577 160 PGFVVLGRILRSC 172 (470)
Q Consensus 160 ~a~~~~~~~~~~~ 172 (470)
+|...|++.++..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 9999998888763
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=9.1e-05 Score=57.55 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=44.9
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGF 162 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 162 (470)
..|++++|.++|+.+...+|. +..-|..|..++-..|++++|+..|......+ +.|+..+-.+..++...|+.+.|.
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~--~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAW--SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence 344555555555555555544 45555555555555555555555555555444 344455555555555555555555
Q ss_pred HHHHHHHh
Q 036577 163 VVLGRILR 170 (470)
Q Consensus 163 ~~~~~~~~ 170 (470)
+.|+..+.
T Consensus 124 ~aF~~Ai~ 131 (157)
T PRK15363 124 KALKAVVR 131 (157)
T ss_pred HHHHHHHH
Confidence 55554443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00088 Score=64.45 Aligned_cols=61 Identities=11% Similarity=-0.060 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 394 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
..|..+.......|++++|...++++++. .|+...|..+...+...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444445555555555555433 23444444444555555555555555544444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00029 Score=53.47 Aligned_cols=94 Identities=14% Similarity=0.012 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--CCHhHHHHHHHHH
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMESNRCM--HDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK--PDVVIYNTLFIGL 438 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~ 438 (470)
.++..+...|++++|.+.|+.+...... .....+..+..++.+.|++++|...|+.+...... .....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444444444444444444432100 01223333444444445555555555444432111 0122334444444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 036577 439 FEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~ 456 (470)
.+.|+.++|.+.++++.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHhCChHHHHHHHHHHHH
Confidence 444555555555554444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00018 Score=51.83 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036577 110 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCA 189 (470)
Q Consensus 110 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (470)
|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4455556666677777777776666543 3334555666666666666677766666666543 3333556666666666
Q ss_pred cCCHHHHHHHHHHHHh
Q 036577 190 ESRIMEAAALFTKLKA 205 (470)
Q Consensus 190 ~g~~~~a~~~~~~~~~ 205 (470)
.|+++.|...+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666666554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0006 Score=55.73 Aligned_cols=89 Identities=8% Similarity=-0.006 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHH
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD--LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNS 182 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (470)
.....+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+++.++.. +.+...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 3556677888888888999999999998876532221 4577888888888999999999888888753 335666777
Q ss_pred HHHHHHhcCCHH
Q 036577 183 LIKGLCAESRIM 194 (470)
Q Consensus 183 l~~~~~~~g~~~ 194 (470)
+..++...|+..
T Consensus 112 lg~~~~~~g~~~ 123 (172)
T PRK02603 112 IAVIYHKRGEKA 123 (172)
T ss_pred HHHHHHHcCChH
Confidence 777777776643
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00022 Score=65.71 Aligned_cols=135 Identities=15% Similarity=0.181 Sum_probs=95.6
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE--NINPNVVTYNSLIHGFCYANDWNEAKCLL 311 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 311 (470)
++..|.+..... .+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..++++.++
T Consensus 50 ~~~~l~~k~~~~---~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L 126 (429)
T PF10037_consen 50 LYSELDKKFERK---KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELL 126 (429)
T ss_pred HHHHHHHHHhcC---CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHH
Confidence 556665544221 3456666777777777777778888877777654 12122344568888888888888888888
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC
Q 036577 312 IEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT 371 (470)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (470)
..=...|+-||..+++.+|..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 127 ~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 127 KNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888877776666666666666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00058 Score=62.82 Aligned_cols=89 Identities=16% Similarity=-0.012 Sum_probs=50.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q 036577 332 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEG 411 (470)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 411 (470)
.+...|++++|+..|+++++.... +...|..+..+|...|++++|...+++++... +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 344555666666666666555433 44555555556666666666666666655543 2345555555666666666666
Q ss_pred HHHHHHHHHHC
Q 036577 412 ALSLYSEMLSK 422 (470)
Q Consensus 412 A~~~~~~~~~~ 422 (470)
|+..|++.++.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666665543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0014 Score=51.12 Aligned_cols=95 Identities=9% Similarity=-0.006 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
...+..-+...|++++|..+|+.+...++. +..-|..|.-++-..|++++|+..|......+ +.|...+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 344445556677777777777776666543 55556666666777777777777777766654 3466666677777777
Q ss_pred cCChhHHHHHHHHHHHC
Q 036577 406 NKEIEGALSLYSEMLSK 422 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~~ 422 (470)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777766543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00073 Score=51.25 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=5.8
Q ss_pred HHHhCCCHHHHHHHHH
Q 036577 262 GLCKEGFVDKAKELFL 277 (470)
Q Consensus 262 ~~~~~g~~~~a~~~~~ 277 (470)
++.+.|+++.|...|+
T Consensus 48 ~~~~~~~~~~A~~~~~ 63 (119)
T TIGR02795 48 AYYAQGKYADAAKAFL 63 (119)
T ss_pred HHHhhccHHHHHHHHH
Confidence 3333333333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.87 E-value=2e-05 Score=43.30 Aligned_cols=29 Identities=45% Similarity=0.793 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036577 430 IYNTLFIGLFEIHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (470)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555666666666666666666655554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00036 Score=61.85 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL-TGRVNRAKELFVSMESNRCMHDVFSYSILINGYC 404 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (470)
|..++....+.+..+.|..+|.++.+.+ ..+..+|...+..-.+ .++.+.|.++|+...+. ++.+...|...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 4444444444444445555555444321 1122233333222222 23333355555444433 2234444444444444
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 405 KNKEIEGALSLYSEMLSKGIKPDV---VIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
..|+.+.|..+|++.+.. +.++. ..|...+.--.+.|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555544432 11111 2444444444445555555555544443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0002 Score=61.15 Aligned_cols=102 Identities=24% Similarity=0.221 Sum_probs=81.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEI 409 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (470)
..-..+.+++.+|+..|.+.++..+. |.+.|..-..+|.+.|.++.|++-.+..+..+ +--..+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 34466788899999999999988655 78888888889999999999998888887764 33567888999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 410 EGALSLYSEMLSKGIKPDVVIYNTLF 435 (470)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~~~~~~l~ 435 (470)
++|++.|++.++ +.|+..+|..=+
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHH
Confidence 999999998884 567766665433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0017 Score=56.00 Aligned_cols=130 Identities=12% Similarity=0.053 Sum_probs=103.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CcchHH
Q 036577 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG---RVSPGF 162 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~ 162 (470)
.++....-++.-+..+|. |...|-.|..+|...|+++.|..-|.+..+.. +++...+..+..++.... ...++.
T Consensus 137 ~~~~l~a~Le~~L~~nP~--d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 137 EMEALIARLETHLQQNPG--DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred cHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 467777788888888887 99999999999999999999999999998875 667777777777665443 356788
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 036577 163 VVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLING 221 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 221 (470)
++|+++++.. +.|+.+...|...+...|++.+|...|+.|.+.. |....+..++..
T Consensus 214 ~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 214 ALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 9999999874 5577777888889999999999999999999863 444555555543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0084 Score=51.81 Aligned_cols=184 Identities=10% Similarity=0.018 Sum_probs=112.4
Q ss_pred CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 036577 252 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT---YNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNV 328 (470)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 328 (470)
+...+-.....+...|++++|.+.|+.+...... +... .-.+..+|.+.+++++|...+++..+........-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3444445566667789999999999998876322 2222 24566778899999999999999887632211222333
Q ss_pred HHHHHHH--cC---------------C---HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 036577 329 IMDELCK--NG---------------K---MDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 329 l~~~~~~--~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
.+.+.+. .+ + ..+|...|+.+++. |-...-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH-
Confidence 3333221 11 1 12333444444433 33333345555444443321
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 389 CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK--GIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
-...--.+...|.+.|.+..|+.-++.+++. +.+........++.+|...|..++|..+...+.
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1112235667789999999999999999975 223334566778899999999999988877664
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00028 Score=50.85 Aligned_cols=80 Identities=20% Similarity=0.348 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCC--------cchHHHHHHHHHhCCCCCCHHHH
Q 036577 110 FNILFGCLAKNKHYDTVLSLFKRLNSTGL-FPDLYTYNILINCFCKMGR--------VSPGFVVLGRILRSCFTPDAVTF 180 (470)
Q Consensus 110 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~--------~~~a~~~~~~~~~~~~~~~~~~~ 180 (470)
....|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..- +-+.+.++++|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666667999999999999999998 8999999999988776542 23445566777776677777777
Q ss_pred HHHHHHHHh
Q 036577 181 NSLIKGLCA 189 (470)
Q Consensus 181 ~~l~~~~~~ 189 (470)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 776666543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0028 Score=54.74 Aligned_cols=175 Identities=11% Similarity=0.094 Sum_probs=104.4
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH--hcC-
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPP-VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTYNILINCFC--KMG- 156 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~--~~g- 156 (470)
...|++++|.+.|+.+....|..+- ..+.-.++.++.+.+++++|...+++..+..-. |+. -+...+.+.+ ..+
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~~~~ 121 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMALDD 121 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhhcch
Confidence 4567899999999999888887221 112345677788889999999999988876311 222 2222222222 111
Q ss_pred --------------C---cchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHH
Q 036577 157 --------------R---VSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLI 219 (470)
Q Consensus 157 --------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 219 (470)
+ ..+|...|+++++. |=...-..+|...+..+... . ...--.+.
T Consensus 122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~---l-a~~e~~ia 182 (243)
T PRK10866 122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR---L-AKYELSVA 182 (243)
T ss_pred hhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH---H-HHHHHHHH
Confidence 1 11233344444433 22222334444444333321 0 01111455
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036577 220 NGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMK 280 (470)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 280 (470)
.-|.+.|.+..|..-++.+.+..+. .+........++.+|...|..++|..+...+.
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~----t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPD----TQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCC----CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 6688889999999999999887754 24455667778888888999888888776554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0024 Score=52.20 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=40.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG 367 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (470)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.... +...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 344444555555555555555555554321111 234444555555555555555555555544222 33344444444
Q ss_pred HHcCCCHHH
Q 036577 368 FCLTGRVNR 376 (470)
Q Consensus 368 ~~~~g~~~~ 376 (470)
+...|+...
T Consensus 116 ~~~~g~~~~ 124 (172)
T PRK02603 116 YHKRGEKAE 124 (172)
T ss_pred HHHcCChHh
Confidence 444444333
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.7e-05 Score=42.77 Aligned_cols=29 Identities=45% Similarity=0.894 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSKG 423 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (470)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00068 Score=55.20 Aligned_cols=93 Identities=11% Similarity=0.044 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRP--NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILIN 401 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (470)
..|..+...+...|++++|...++........+ ...++..+...+...|++++|...++...... +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 344555555556666666666666665543222 12355666666666666666666666665542 223444445554
Q ss_pred HHH-------HcCChhHHHHHHH
Q 036577 402 GYC-------KNKEIEGALSLYS 417 (470)
Q Consensus 402 ~~~-------~~g~~~~A~~~~~ 417 (470)
.+. ..|++++|...++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 444 5556554444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.9e-05 Score=52.54 Aligned_cols=81 Identities=19% Similarity=0.163 Sum_probs=36.4
Q ss_pred cCCHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC
Q 036577 190 ESRIMEAAALFTKLKAFGCE-PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF 268 (470)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (470)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. ...+ +.+......+..++.+.|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-------~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-------PSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-------HCHHHHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-------CCCHHHHHHHHHHHHHhCC
Confidence 34555555555555543211 1223333345555555555555555555 2211 1222333334555555555
Q ss_pred HHHHHHHHHH
Q 036577 269 VDKAKELFLK 278 (470)
Q Consensus 269 ~~~a~~~~~~ 278 (470)
+++|++++++
T Consensus 74 y~eAi~~l~~ 83 (84)
T PF12895_consen 74 YEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 5555555543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0019 Score=55.67 Aligned_cols=127 Identities=11% Similarity=0.100 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC---CHHHHHHH
Q 036577 304 WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG---RVNRAKEL 380 (470)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~ 380 (470)
.+....-++.-...+ +-|...|..|..+|...|+.+.|..-|....+...+ +...+..+..++.... .-.++..+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 444444444444443 667778888888888888888888888888776433 6666666666654332 35677778
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 381 FVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLF 435 (470)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 435 (470)
|++++..+ +-|+.+..-|...+...|++.+|...|+.|++. -|....+..++
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~i 267 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLI 267 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHH
Confidence 88877764 447777777777788888888888888888764 33344444444
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00082 Score=48.52 Aligned_cols=75 Identities=19% Similarity=0.363 Sum_probs=43.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGV-QPNVVTFNVIMDELCKNG--------KMDEASRLLDLMIQIGVRPNAFVYNTLM 365 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 365 (470)
|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+++.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444666666666666666666 566666666666554432 2334555666666666666666666666
Q ss_pred HHHH
Q 036577 366 DGFC 369 (470)
Q Consensus 366 ~~~~ 369 (470)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0035 Score=55.81 Aligned_cols=119 Identities=15% Similarity=0.115 Sum_probs=65.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHH
Q 036577 183 LIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRT-GHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIID 261 (470)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 261 (470)
.+..|...|++..|-+++.++- ..|... |++++|++.|++..+.....+. ...-..++..+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGS-PHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHHHHH
Confidence 4455666666666655555543 345455 7888888888877654311000 0112345566677
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 262 GLCKEGFVDKAKELFLKMKDENIN-----PNVV-TYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 262 ~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
.+.+.|++++|.++|+++...... .+.. .+-..+-++...||+..|...+++....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 788888888888888877654221 1121 1222333556667777887777777654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=9.6e-05 Score=49.64 Aligned_cols=62 Identities=26% Similarity=0.324 Sum_probs=47.9
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 148 (470)
..|++++|++.|+.+....|. +..++..++.+|.+.|++++|.++++++... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 467888999999999888887 7888888889999999999999999888876 4554444333
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0019 Score=57.29 Aligned_cols=131 Identities=11% Similarity=0.060 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCcccCCCHhhH
Q 036577 178 VTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR-TGHTIVALNLFEEMANGNGEIGVVCEPNTVTY 256 (470)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (470)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+...|......-.. .++.+.|.++|+...+.. +.+...|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-------~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-------PSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-------TT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-------CCCHHHH
Confidence 356666666666666777777777666432 1233334333333222 455555777777766553 5566666
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 257 TTIIDGLCKEGFVDKAKELFLKMKDENINPN---VVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
...++.+.+.++.+.|..+|+..... +.++ ...|...+..=.+.|+.+.+..+.+++.+.
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666666777777777777766654 2211 236666666666666766666666666554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.012 Score=52.76 Aligned_cols=327 Identities=13% Similarity=-0.011 Sum_probs=169.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036577 116 CLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIME 195 (470)
Q Consensus 116 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (470)
.+.+..++..|+..+....... +.+..-|..-...+...|++++|.--.+.-++.. +-......-.-+++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHH
Confidence 3455677888888888888775 4456667777777777777777765444433321 1112223333344444444444
Q ss_pred HHHHHHH---------------HHhc-CCCCCcchHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHH
Q 036577 196 AAALFTK---------------LKAF-GCEPNVITYSTL-INGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTT 258 (470)
Q Consensus 196 a~~~~~~---------------~~~~-g~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (470)
|.+.++. +... .-+|....|..+ ..++...|+.++|.+.--.....+ ..+......
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-------~~n~~al~v 208 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-------ATNAEALYV 208 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-------cchhHHHHh
Confidence 4443331 1100 011222333333 245566778888887777766654 333333333
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHH---H----------HHHHccCCHHHHHHHHHHHHHC---CCCCC
Q 036577 259 IIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSL---I----------HGFCYANDWNEAKCLLIEMMDQ---GVQPN 322 (470)
Q Consensus 259 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---i----------~~~~~~~~~~~a~~~~~~~~~~---~~~~~ 322 (470)
-..++.-.++.+.+...|++.+..+ |+...-..+ . .-..+.|.+..|.+.+.+.+.. ...++
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred cccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 3334445677888888888777653 443322221 1 1234667777777777777654 23444
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 036577 323 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMH-DVFSYSILIN 401 (470)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~ 401 (470)
...|.....+..+.|+.++|+.--+...+.+.. -...|..-..++...+++++|.+-++...+....+ ...++.....
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~ 365 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQL 365 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 555666666677777777777777777654211 12233333445556677777777777766543222 2333333333
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH---hcCCHHHHHHHHHHHH
Q 036577 402 GYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF---EIHQVERAFKLFDEMR 455 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~ 455 (470)
++-+..+.+- ..++.-.......|.-..|..+.-.+. ..|...+|+..|++.-
T Consensus 366 aLkkSkRkd~-ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevg 421 (486)
T KOG0550|consen 366 ALKKSKRKDW-YKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVG 421 (486)
T ss_pred HHHHhhhhhH-HHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHH
Confidence 3333222111 111111111122334445544332222 2355566766666553
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0022 Score=61.74 Aligned_cols=135 Identities=10% Similarity=-0.014 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc--------chHHHHHHHHHhC
Q 036577 105 PPVSSFNILFGCLAKNK-----HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV--------SPGFVVLGRILRS 171 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~~~~~ 171 (470)
.+..+|...+++..... +.+.|.++|++..+.. +.....|..+..++.....+ ..+.+..++....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 57889999988865433 3779999999999885 44556666665555433222 2333333333332
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 172 -CFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 172 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
..+.+..+|..+.-.+...|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....+
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 134456778888777778999999999999999865 688899999999999999999999999998865
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.033 Score=49.74 Aligned_cols=282 Identities=16% Similarity=0.098 Sum_probs=175.9
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCCcch--HHHHHHHHHhcCChHH
Q 036577 155 MGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGL--CAESRIMEAAALFTKLKAFGCEPNVIT--YSTLINGLCRTGHTIV 230 (470)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~ 230 (470)
.|+-..|.++-.+..+. +..|....-.|+.+- .-.|+++.|.+-|+.|... |.... ...|.-.-.+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 45556666655544321 233444444444432 3478888888888888753 33222 2333334456788888
Q ss_pred HHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHH---HccCCH
Q 036577 231 ALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN-INPNVVT--YNSLIHGF---CYANDW 304 (470)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~--~~~li~~~---~~~~~~ 304 (470)
|..+-+..-... +.-...+...+...|..|+++.|+++++.-.... +.+++.- -..|+.+- .-..+.
T Consensus 173 Ar~yAe~Aa~~A-------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 173 ARHYAERAAEKA-------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred HHHHHHHHHhhc-------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 888888776654 3445677888888888999999999888765532 2333321 22222221 122356
Q ss_pred HHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHH
Q 036577 305 NEAKCLLIEMMDQGVQPNVVTF-NVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVS 383 (470)
Q Consensus 305 ~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 383 (470)
..|...-.+..+. .||..-- ..-..++.+.|+..++-.+++.+-+..+.|+. + .+..+.+.|+... .-+++
T Consensus 246 ~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdta~--dRlkR 317 (531)
T COG3898 246 ASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDTAL--DRLKR 317 (531)
T ss_pred HHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCcHH--HHHHH
Confidence 6666655555544 5554332 23356788999999999999999988655543 2 2233455665332 22222
Q ss_pred H---HHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHcC
Q 036577 384 M---ESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE-IHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 384 ~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~g 458 (470)
. .+. -+.+..+...+..+-...|++..|..--+.... ..|....|..|.+.-.. .|+..++..++-+..+.-
T Consensus 318 a~~L~sl-k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 318 AKKLESL-KPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHhc-CccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 2 221 133777777888888899999998888777764 47788888877776554 499999999988887643
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00023 Score=47.26 Aligned_cols=56 Identities=9% Similarity=0.188 Sum_probs=33.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 400 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
...+...|++++|.+.|+++++.... +...+..+..++...|++++|..+|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666666666666666654311 444666666666666666666666666655
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00068 Score=60.36 Aligned_cols=129 Identities=15% Similarity=0.101 Sum_probs=56.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH----HCCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHhH
Q 036577 291 YNSLIHGFCYANDWNEAKCLLIEMM----DQGVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQI----GV-RPNAFV 360 (470)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~ 360 (470)
|..|...|.-.|++++|+...+.-. +.|.. .....+..+..++.-.|+++.|.+.|+..... |- ......
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4444444555556666655443322 11211 11234445555555555566555555543221 11 112223
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 361 YNTLMDGFCLTGRVNRAKELFVSMESN----R-CMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
.-+|.+.|.-..++++|+.++.+-... + ..-....+.+|..+|...|..++|+.+.+.-
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 334445554445555555555442210 0 0013334444555555555555555544433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00025 Score=47.72 Aligned_cols=64 Identities=14% Similarity=0.240 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 036577 392 DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH-QVERAFKLFDEMRR 456 (470)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 456 (470)
+...|..+...+...|++++|+..|++.++.+.. +...|..+..++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556667777777777777777777777765322 4456666777777777 57777777777665
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.022 Score=45.35 Aligned_cols=133 Identities=12% Similarity=0.091 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCCHhH
Q 036577 284 INPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV---RPNAFV 360 (470)
Q Consensus 284 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~ 360 (470)
..|++.....|..+....|++.+|...|++...--..-|....-.+..+....+++..|...++++.+... .|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 35777777778888888888888888888887665666777777788888888888888888888777632 233 3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 036577 361 YNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (470)
...+.+.+...|....|+.-|+...+.- |+...-.-....+.+.|+.++|..-+.+..
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 4456777888888888888888887753 444433334455677777777665554443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0007 Score=60.27 Aligned_cols=272 Identities=12% Similarity=0.036 Sum_probs=168.4
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHH--HHhC--CC-CCCHHHHHHH
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPV----SSFNILFGCLAKNKHYDTVLSLFKR--LNST--GL-FPDLYTYNIL 148 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~--m~~~--~~-~~~~~~~~~l 148 (470)
|+..++.|+...-+.+|+.+++.+.. +. .+|..|..+|...++|++|++.... .+.+ |- .-...+...|
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe--Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE--DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch--HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 44456778899999999999998765 32 3466677777778899999887643 1111 10 1123344556
Q ss_pred HHHHHhcCCcchHHHHHHHH----HhCCC-CCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 036577 149 INCFCKMGRVSPGFVVLGRI----LRSCF-TPDAVTFNSLIKGLCAESR--------------------IMEAAALFTKL 203 (470)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~ 203 (470)
.+.+--.|.+++|.-.-.+- .+.|- ......+..+...|...|+ ++.|.+.|.+=
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 66666777888776543221 12221 1123344556777765443 23344444432
Q ss_pred H----hcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHH
Q 036577 204 K----AFGCE-PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLK 278 (470)
Q Consensus 204 ~----~~g~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 278 (470)
. +.|-. .--..|..|...|.-.|+++.|+...+.-.....+++. -......+..+.+++.-.|+++.|.+.|+.
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh-HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 1 11100 12345666777777788999988876654443322211 123345788888999999999999998877
Q ss_pred HHh----CC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----C-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 036577 279 MKD----EN-INPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----G-VQPNVVTFNVIMDELCKNGKMDEASRLLDL 348 (470)
Q Consensus 279 ~~~----~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 348 (470)
-.. .| -.....+..+|...|.-..++++|+.++.+-... + ..-....+.++..+|...|..++|+.+.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 543 22 1234556677888888888899999888764321 1 122456788899999999999999888776
Q ss_pred HHHc
Q 036577 349 MIQI 352 (470)
Q Consensus 349 ~~~~ 352 (470)
-.+.
T Consensus 341 hl~~ 344 (639)
T KOG1130|consen 341 HLRS 344 (639)
T ss_pred HHHH
Confidence 6543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0044 Score=55.22 Aligned_cols=95 Identities=13% Similarity=0.127 Sum_probs=44.4
Q ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-----CH
Q 036577 361 YNTLMDGFCLT-GRVNRAKELFVSMESN----RCMH--DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP-----DV 428 (470)
Q Consensus 361 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~ 428 (470)
+..+...|... |++++|.+.|++..+. + .+ -..++..++..+.+.|++++|+++|++........ +.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 33444455555 5666666666554331 1 11 12334455556666666666666666665432211 11
Q ss_pred h-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 429 V-IYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 429 ~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
. .|...+-.+...|+...|.+.+++...
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 122233344455666666666666553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0091 Score=44.83 Aligned_cols=91 Identities=16% Similarity=0.023 Sum_probs=47.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHH
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVRPN--AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCM--HDVFSYSILINGYCK 405 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 405 (470)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++........ -+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 4445556666666666666666554432 234445555566666666666666655543211 012222223345555
Q ss_pred cCChhHHHHHHHHHH
Q 036577 406 NKEIEGALSLYSEML 420 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~ 420 (470)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 666666666554443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00017 Score=47.96 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=36.4
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST 136 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 136 (470)
...|++++|+..|+.+++..|. +..+|..+..++...|++++|...|+++.+.
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456777777777777776665 6677777777777777777777777776654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.033 Score=44.36 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCcchHHH
Q 036577 139 FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGC-EPNVITYST 217 (470)
Q Consensus 139 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~ 217 (470)
.|+..--..|..++.+.|+..+|...|++....-+..|....-.+.++....+++..|...++.+.+... ..+..+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4455555555555566666666666666555444444555555555555556666666666555554320 012233334
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 036577 218 LINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 218 l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
+...+...|..++|...|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 44555555555556555555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0066 Score=45.60 Aligned_cols=92 Identities=18% Similarity=0.142 Sum_probs=55.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 036577 113 LFGCLAKNKHYDTVLSLFKRLNSTGLFPD--LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP---DAVTFNSLIKGL 187 (470)
Q Consensus 113 l~~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 187 (470)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++...... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 44555566777777777777777664433 2355556667777777777777777766542 11 222333344456
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 036577 188 CAESRIMEAAALFTKLKA 205 (470)
Q Consensus 188 ~~~g~~~~a~~~~~~~~~ 205 (470)
...|+.++|++.+-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 667777777776655443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.11 Score=50.08 Aligned_cols=316 Identities=16% Similarity=0.147 Sum_probs=146.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH----------HHHhcCCcchHHHHHHHHHhCCCC
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILIN----------CFCKMGRVSPGFVVLGRILRSCFT 174 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~----------~~~~~g~~~~a~~~~~~~~~~~~~ 174 (470)
|.+..|..+.....+.-.++.|...|-+.... +.......|-. .-+-.|++++|.+++-++-++.+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhh
Confidence 67889999999888888888888887654332 22211111111 112246777777777665543211
Q ss_pred ----CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH------HHHHhc
Q 036577 175 ----PDAVTFNSLIKGLCAES---RIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLF------EEMANG 241 (470)
Q Consensus 175 ----~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~------~~~~~~ 241 (470)
...--|..+.+.+..-| +-+.-...|+.|-+. ..+...|......|...|+.+.-.+.+ ..+...
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~l 844 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVL 844 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHH
Confidence 01111222222221100 111111222222111 122333444444444444433222211 111111
Q ss_pred CCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 036577 242 NGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQP 321 (470)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 321 (470)
... .+.+....-.+..++.+.|.-++|.+.|-+... | ...+..|...++|.+|.++-+... -|
T Consensus 845 a~~----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~----l~ 907 (1189)
T KOG2041|consen 845 ART----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQ----LP 907 (1189)
T ss_pred HHh----cCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhcc----ch
Confidence 000 244555666777778888887777776633321 1 123455666677777766654432 11
Q ss_pred CHhHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH----hHHHHH-HHHH----------
Q 036577 322 NVVTF--------------NVIMDELCKNGKMDEASRLLDLMIQI----GVRPNA----FVYNTL-MDGF---------- 368 (470)
Q Consensus 322 ~~~~~--------------~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~----~~~~~l-~~~~---------- 368 (470)
...+. .--|..+.+.|+.-.|-+++.+|.+. +.++-. .++.++ +.-+
T Consensus 908 qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~ 987 (1189)
T KOG2041|consen 908 QVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKI 987 (1189)
T ss_pred hHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 11111 11234456667666666666666543 222111 111111 1111
Q ss_pred HcCCCHHHHHHHHHHHHHC-------CC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHhHHHHHHHHH
Q 036577 369 CLTGRVNRAKELFVSMESN-------RC--MHDVFSYSILINGYCKNKEIEGALSLYSEMLSK-GIKPDVVIYNTLFIGL 438 (470)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~-------~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~ 438 (470)
-+.|..++|..+++...-. +. -....+|..|.+--...|.++.|+..--.+.+. .+-|...+|..|.-+-
T Consensus 988 ~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaa 1067 (1189)
T KOG2041|consen 988 DKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAA 1067 (1189)
T ss_pred hhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHH
Confidence 1345556665544432211 00 012344455555566678888888764444432 4566677777665544
Q ss_pred HhcC
Q 036577 439 FEIH 442 (470)
Q Consensus 439 ~~~g 442 (470)
+...
T Consensus 1068 ca~r 1071 (1189)
T KOG2041|consen 1068 CAVR 1071 (1189)
T ss_pred hhhh
Confidence 4433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.022 Score=47.83 Aligned_cols=182 Identities=13% Similarity=0.091 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--hHHHHH
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDENI--NPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV--VTFNVI 329 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 329 (470)
..+-.....+...|++++|.+.|+.+...-. +--....-.++.++.+.|+++.|...++..++. -|+. .-+...
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y 83 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHH
Confidence 3444556667788999999999999987521 122345566788889999999999999998876 2332 112222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC---CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVR---PNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN 406 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (470)
+.+.+......... ....+.. --...+..++.-|-...-..+|...+..+... =...--.+...|.+.
T Consensus 84 ~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 84 MLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHc
Confidence 22221111111000 0000000 00123444555555566666666665555432 112223467789999
Q ss_pred CChhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCCHHHHH
Q 036577 407 KEIEGALSLYSEMLSKGIKPD----VVIYNTLFIGLFEIHQVERAF 448 (470)
Q Consensus 407 g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 448 (470)
|.+..|..-++.+++. -|+ ......++.++.+.|..+.+.
T Consensus 155 ~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999886 233 235567788999999888554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.069 Score=45.13 Aligned_cols=132 Identities=11% Similarity=0.027 Sum_probs=69.3
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHH-----
Q 036577 255 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVI----- 329 (470)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 329 (470)
+.+.++.++.-.|.+.-...++.++.+...+.++.....+.+.-.+.||.+.|...|++..+..-..+..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445555555566666666666666666555556666666666666667766666666655543222232222222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
...|...+++..|...+.++...+.. |+...|.-.-+..-.|+...|.+..+.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22334445555555555555554332 3333333333333345555566555555554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0011 Score=44.45 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=36.4
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 036577 223 CRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 282 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (470)
...|++++|+++|+++.... +.+...+..+..+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677777777777776665 446666677777777777777777777777665
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.1 Score=46.92 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=73.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFC 369 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (470)
+.+.-+.-+...|+...|.++-.+.. .|+-..|...+.+++..+++++-..+-.. +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34445556667777777777765553 56777777788888888888776655332 113466777788888
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 370 LTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.-.+.
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888887776551 1245667778888888887764443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.074 Score=44.96 Aligned_cols=175 Identities=7% Similarity=0.031 Sum_probs=122.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHH-----H
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNT-----L 364 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 364 (470)
+.+.++.++.-.|.+.-...++.+.++...+.++.....+++.-.+.|+.+.|...|++..+..-+.|..+++. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44567777777888999999999999877677888889999999999999999999998876544444444433 3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---
Q 036577 365 MDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEI--- 441 (470)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--- 441 (470)
...|.-.+++..|...+.++...+ +.|+..-|.-.-+....|+..+|++.++.|.+. .|...+-++++..++..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~tmyEL 335 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNLTTMYEL 335 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHHHHHHHH
Confidence 445666788889988888887764 346777777777777889999999999999965 45555445444333221
Q ss_pred --CCHHHHHHHHHHHHHcCCCCChhhhhc
Q 036577 442 --HQVERAFKLFDEMRRDGVAADTWTYRT 468 (470)
Q Consensus 442 --g~~~~A~~~~~~m~~~g~~p~~~~~~~ 468 (470)
-+..+-...+...+. |..||.+.-.|
T Consensus 336 ~Ys~~~~~k~~l~~~ia-~~~~d~f~~~c 363 (366)
T KOG2796|consen 336 EYSRSMQKKQALLEAVA-GKEGDSFNTQC 363 (366)
T ss_pred HhhhhhhHHHHHHHHHh-ccCCCcccchh
Confidence 122233344444443 57888765443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.024 Score=47.66 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=9.0
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 036577 115 GCLAKNKHYDTVLSLFKRLNS 135 (470)
Q Consensus 115 ~~~~~~~~~~~A~~~~~~m~~ 135 (470)
..+...|++.+|+..|+.+..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~ 33 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLID 33 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 333444444444444444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0085 Score=49.19 Aligned_cols=86 Identities=20% Similarity=0.228 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc----------------CCHHHHHHH
Q 036577 287 NVVTYNSLIHGFCY-----ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN----------------GKMDEASRL 345 (470)
Q Consensus 287 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~a~~~ 345 (470)
+-.+|..+++.|.+ .|..+=....+..|.+-|+.-|..+|+.|+..+=+. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44555555555542 345555556666666666666666666666654331 123445566
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHcCC
Q 036577 346 LDLMIQIGVRPNAFVYNTLMDGFCLTG 372 (470)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g 372 (470)
+++|...|+-||..++..+++.+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 666666666666666666666654433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.015 Score=45.92 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCChhh
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMR-----RDGVAADTWT 465 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~ 465 (470)
+...++..+...|++++|..+.+.++.... -+...|..++.++...|+..+|.+.|+++. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555566666777777777766665432 255566666777777777777776666664 3466666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0013 Score=44.14 Aligned_cols=63 Identities=21% Similarity=0.166 Sum_probs=37.0
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHH
Q 036577 358 AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNK-EIEGALSLYSEMLS 421 (470)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 421 (470)
...|..+...+...|++++|+..|++.++.+ +.+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455556666666666666666666665543 335555666666666666 46666666665553
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0076 Score=52.52 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPN--AFVYNTLMDGFCLTGRVNRAKELFVSMESNR--CMHDVFSYSILIN 401 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~ 401 (470)
|...+..+.+.|++++|...|+.+++..+... ...+-.++..|...|++++|...|+.+.+.. .+.....+-.++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444444555667777766766666533211 2345556666666666666666666666542 1113344444555
Q ss_pred HHHHcCChhHHHHHHHHHHHC
Q 036577 402 GYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~ 422 (470)
++...|+.++|.++|+++++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 566666666666666666654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.15 Score=46.76 Aligned_cols=79 Identities=15% Similarity=0.128 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHCCCCC----CHHHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 036577 374 VNRAKELFVSMESNRCMH----DVFSYSILING--YCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERA 447 (470)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 447 (470)
+..-..+-+-+.+.|++| +...-|.+.++ +...|++.++.-.-..+. .+.|++.+|..+.-.+....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHH
Confidence 333344444445566666 44445555544 556899998887665555 4688999999999999999999999
Q ss_pred HHHHHHH
Q 036577 448 FKLFDEM 454 (470)
Q Consensus 448 ~~~~~~m 454 (470)
..++..+
T Consensus 515 ~~~l~~L 521 (549)
T PF07079_consen 515 WEYLQKL 521 (549)
T ss_pred HHHHHhC
Confidence 9998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.11 Score=47.27 Aligned_cols=189 Identities=10% Similarity=0.069 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---cC
Q 036577 229 IVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN---INPNVVTYNSLIHGFCY---AN 302 (470)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~ 302 (470)
++..+.+.++...-.... ..+..+...++-.|....+++...++.+.+.... +.....+-....-++.+ .|
T Consensus 120 ~~l~~~L~~i~~rLd~~~---~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~g 196 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPE---LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPG 196 (374)
T ss_pred HHHHHHHHHHHHhhCCHh---hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCC
Confidence 445555566655442111 1222333455556777788888888888877641 11122222233444555 67
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCC
Q 036577 303 DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK---------NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGR 373 (470)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (470)
+.++|+.++..+......+++.+|..+...|-. ....++|+..|.+.-+.. ||...--.++..+...|.
T Consensus 197 dre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 197 DREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGH 274 (374)
T ss_pred CHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCC
Confidence 888888888776555556777777777766532 112555666666555442 343332222222222332
Q ss_pred H----HHHHHHH---HH-HHHCCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 374 V----NRAKELF---VS-MESNRCM---HDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 374 ~----~~A~~~~---~~-~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
- .+..++- .. +.++|.. .+--.+..++.++.-.|+.++|.+..++|...
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1 1222222 11 1122211 23333455566666666666666666666643
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.013 Score=48.18 Aligned_cols=89 Identities=25% Similarity=0.297 Sum_probs=72.0
Q ss_pred CCCHhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC----------------CHHHHH
Q 036577 320 QPNVVTFNVIMDELCK-----NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG----------------RVNRAK 378 (470)
Q Consensus 320 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~A~ 378 (470)
..+-.+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|++.+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4577788888888765 4677778888999999999999999999999876421 346678
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036577 379 ELFVSMESNRCMHDVFSYSILINGYCKNKE 408 (470)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (470)
+++++|...|+.||..++..++..+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.32 Score=47.48 Aligned_cols=108 Identities=11% Similarity=0.096 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYC 404 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (470)
+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++-+... .+.-|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 33444444555566666655555443 3566666666666666666666555543332 1233555666677
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 036577 405 KNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
+.|+.++|.+++-+.-. .+ -...+|.+.|++.+|.++.
T Consensus 756 ~~~n~~EA~KYiprv~~---l~------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG---LQ------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCC---hH------HHHHHHHHhccHHHHHHHH
Confidence 77777777766655421 11 3456666677777766543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.078 Score=43.50 Aligned_cols=199 Identities=16% Similarity=0.026 Sum_probs=117.9
Q ss_pred HHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 72 ERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151 (470)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 151 (470)
....-.|.-+-+.|-..-|+--|.+.+...|. -+..||.+.-.+...|+++.|.+.|+...+.+ +....+...-.-+
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~--m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~ 142 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC--cHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhcccee
Confidence 33334455566677788888889888888876 67889999999999999999999999999875 3333444333344
Q ss_pred HHhcCCcchHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhcCCCCCcchHHHHHHHHHhcCChH
Q 036577 152 FCKMGRVSPGFVVLGRILRSCF-TPDAVTFNSLIKGLCAESRIMEAAALFT-KLKAFGCEPNVITYSTLINGLCRTGHTI 229 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 229 (470)
+.--|++.-|.+-+-..-+... .|-...|--+. -..-++.+|..-+. +... .|..-|...+-.|. .|++.
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS 214 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKIS 214 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-Hhhcc
Confidence 4556888888887777666531 12222232222 23445666655443 3332 35455554443332 22221
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 036577 230 VALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 282 (470)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (470)
...+++++.........-...-+.||--+..-+...|+.++|..+|+-....
T Consensus 215 -~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 215 -EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred -HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1223444433221000000112356777777777888888888888776654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.15 Score=43.37 Aligned_cols=56 Identities=21% Similarity=0.209 Sum_probs=35.9
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPP-PVSSFNILFGCLAKNKHYDTVLSLFKRLNST 136 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 136 (470)
.+..|++++|.+.|+.+..+.|..| ...+--.++.++.+.+++++|+...++..+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3455677777777777777666522 2344455566666777777777777776655
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.015 Score=50.66 Aligned_cols=99 Identities=15% Similarity=0.075 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCH
Q 036577 178 VTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNV----ITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNT 253 (470)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (470)
..|...+..+.+.|++++|...|+.+.+.- |+. ..+..+...|...|++++|...|+.+....+. .+...
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~----s~~~~ 217 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK----SPKAA 217 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----Ccchh
Confidence 445555555566788888888888888752 443 46677788888888888888888888876532 12334
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDE 282 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (470)
..+..+..++...|+.++|.++|+.+.+.
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555667777788888888888887765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.023 Score=44.87 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES-----NRCMHDVFS 395 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 395 (470)
....++..+...|++++|..+...+....+- +...|..++.+|...|+...|.++|+.+.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666666777777777766666433 566666677777777777777666665532 355665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0041 Score=48.79 Aligned_cols=86 Identities=10% Similarity=-0.023 Sum_probs=48.2
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPG 161 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 161 (470)
...|++++|..+|.-+...++. +..-|..|..++-..+++++|+..|......+ ..|...+.....++...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 3455666666666666555544 45555666666666666666666665544433 23444445555555566666666
Q ss_pred HHHHHHHHh
Q 036577 162 FVVLGRILR 170 (470)
Q Consensus 162 ~~~~~~~~~ 170 (470)
+..|+....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 665555554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0036 Score=42.57 Aligned_cols=56 Identities=13% Similarity=-0.054 Sum_probs=32.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 366 DGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
..|.+.+++++|.++++.++..+ +.+...|.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555666666666666665553 335555555666666666666666666666544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.28 Score=44.81 Aligned_cols=119 Identities=16% Similarity=0.099 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHhCCCCCCHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYTYNILINCFCK---MGRVSPGFVVLGRILRSCFTPDAVT 179 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 179 (470)
++.+...++-+|....+|+..+++.+.+.... +......-....-++-+ .|+.++|++++..++...-.++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34444556667888899999999999887752 12233333345555666 7889999999988666656778888
Q ss_pred HHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 036577 180 FNSLIKGLCA---------ESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTG 226 (470)
Q Consensus 180 ~~~l~~~~~~---------~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 226 (470)
|..+.+.|-. ....++|+..|.+.-+. .|+...--.++..+...|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcC
Confidence 8888887642 12356677777665543 244433333333333344
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0027 Score=43.89 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC-CCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 394 FSYSILINGYCKNKEIEGALSLYSEMLSK----GI-KPD-VVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+|+.+..+|...|++++|++.|++.++. |- .|+ ..++..+...+...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666666666677777777666665532 11 112 34566666777777777777777766653
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.089 Score=41.48 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=61.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEI 409 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (470)
..-+...|++++|..+|.-+...++. +..-+..|..++-..+++++|...|......+ .-|...+-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 33445677888888887777766544 55566777777777777888877776654433 22444455567777777888
Q ss_pred hHHHHHHHHHHH
Q 036577 410 EGALSLYSEMLS 421 (470)
Q Consensus 410 ~~A~~~~~~~~~ 421 (470)
+.|...|+..++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888887777776
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.29 Score=44.10 Aligned_cols=279 Identities=13% Similarity=0.120 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 109 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLC 188 (470)
Q Consensus 109 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (470)
+|..+.......|+.+-|..+++ . .|... .-+..+.+.|+.+.| +.+..+.| .||. +|..|+..--
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~----~--Ep~~~---~qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~L~~ 67 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE----L--EPRAS---KQVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLHLKR 67 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH----c--CCChH---HHHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHHHHH
Confidence 46778888889999999988763 2 45543 234555667776666 56666665 4443 4555555433
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC
Q 036577 189 AESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF 268 (470)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (470)
+.. .. +.+ .+... .|.. ..+...|++..+.+.-..+|.+- + .-.......+-.++.. .+
T Consensus 68 ~l~-~s---~f~-~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~---d-------~~~~~a~~~l~~~~~~-~~ 126 (319)
T PF04840_consen 68 KLS-LS---QFF-KILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQE---D-------RFQELANLHLQEALSQ-KD 126 (319)
T ss_pred hCC-HH---HHH-HHHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhc---c-------hHHHHHHHHHHHHHhC-CC
Confidence 322 22 222 33322 1332 34455666766666655555432 1 1111222222222222 33
Q ss_pred HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH---H-CCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 036577 269 VDKAKELFLKMKDE-NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMM---D-QGVQPNVVTFNVIMDELCKNGKMDEAS 343 (470)
Q Consensus 269 ~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 343 (470)
.+.-...+....+. +-..+......++ ++-.++++.-. + .+......+.+..+.-+...|+...|.
T Consensus 127 ~~~~~~~L~~a~~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~ 197 (319)
T PF04840_consen 127 VEEKISFLKQAQKLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAE 197 (319)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHH
Confidence 33333333333221 0001111111111 12222222111 1 111222345566677778899988888
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 036577 344 RLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKG 423 (470)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (470)
++-.+.. -|+...|...+.+++..+++++-.++... +. .+.-|...+.+|.+.|...+|..+..++
T Consensus 198 kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK---sPIGyepFv~~~~~~~~~~eA~~yI~k~---- 263 (319)
T PF04840_consen 198 KLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KK---SPIGYEPFVEACLKYGNKKEASKYIPKI---- 263 (319)
T ss_pred HHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC---CCCChHHHHHHHHHCCCHHHHHHHHHhC----
Confidence 8866663 46899999999999999999988876432 22 3467889999999999999999998772
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 036577 424 IKPDVVIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
+ +..-+..|.+.|++.+|.+..
T Consensus 264 -~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 264 -P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred -C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 2 134556678888888886653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.3 Score=43.97 Aligned_cols=81 Identities=12% Similarity=0.098 Sum_probs=37.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036577 120 NKHYDTVLSLFKRLNSTGLFPDLY--TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAA 197 (470)
Q Consensus 120 ~~~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 197 (470)
.|+++.|.+-|+.|... |... -...|.-...+.|..+.|.+.-++..... +.-...+...+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 45555555555555541 2111 11222222334555555555555544331 222345555555555555555555
Q ss_pred HHHHHHH
Q 036577 198 ALFTKLK 204 (470)
Q Consensus 198 ~~~~~~~ 204 (470)
++.+.-+
T Consensus 209 kLvd~~~ 215 (531)
T COG3898 209 KLVDAQR 215 (531)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.008 Score=40.81 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=25.8
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 402 GYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.|.+.+++++|+++++.++..+.. +...|......+.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555555555543211 333444444555555555555555555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.013 Score=43.48 Aligned_cols=92 Identities=10% Similarity=-0.028 Sum_probs=75.2
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhc
Q 036577 79 EGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL---YTYNILINCFCKM 155 (470)
Q Consensus 79 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~ 155 (470)
......|+++.|++.|.+.+..-|. .+.+||.-..++.-+|+.++|++-+++..+..-.... ..|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3445678999999999999998887 7889999999999999999999999998876322222 3455556678888
Q ss_pred CCcchHHHHHHHHHhCC
Q 036577 156 GRVSPGFVVLGRILRSC 172 (470)
Q Consensus 156 g~~~~a~~~~~~~~~~~ 172 (470)
|+.+.|..-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 99999999999888877
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.002 Score=44.52 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=48.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 036577 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEP-NTVTYTTIIDGLCKEGFVDKAKELFLKMKD 281 (470)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (470)
.+++.+...|...|++++|+..|++..+.....+. ..| ...++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45777888888888888888888887754221111 123 266788888999999999999999987654
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.28 Score=47.04 Aligned_cols=166 Identities=19% Similarity=0.125 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHH-----HHHHHHHhCCCHHH
Q 036577 197 AALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYT-----TIIDGLCKEGFVDK 271 (470)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~ 271 (470)
+.-++++++.|-.|+... +...++-.|.+.+|-++|.+--..++ -...|+ -+..-+...|..++
T Consensus 620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enR--------AlEmyTDlRMFD~aQE~~~~g~~~e 688 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENR--------ALEMYTDLRMFDYAQEFLGSGDPKE 688 (1081)
T ss_pred HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhh--------HHHHHHHHHHHHHHHHHhhcCChHH
Confidence 344566677776666543 34456667888888888776432221 001111 11222333333333
Q ss_pred HHHHHHHHHh--CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH------HHHCCC---CCCHhHHHHHHHHHHHcCCHH
Q 036577 272 AKELFLKMKD--ENINPNVVTYNSLIHGFCYANDWNEAKCLLIE------MMDQGV---QPNVVTFNVIMDELCKNGKMD 340 (470)
Q Consensus 272 a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 340 (470)
-..+.++-.+ .+++.. .+....+...|+.++|..+..+ +.+.+. ..+..+...+...+.+...+.
T Consensus 689 KKmL~RKRA~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 689 KKMLIRKRADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred HHHHHHHHHHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccc
Confidence 2222221111 011111 1233445566777777655321 111111 122334444444444555566
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 341 EASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
.|.++|..|-.. ..+++.....+++++|..+-++..+
T Consensus 765 LAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 765 LAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 666666665421 2455666667777777766655443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.022 Score=51.21 Aligned_cols=132 Identities=11% Similarity=0.043 Sum_probs=79.8
Q ss_pred HHHhccCCCCccccCChhHHHHHHHHHHhcCCC-------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036577 71 RERFKSSGEGDITTITPNEAFCIFDYMLNMRPS-------------PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG 137 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 137 (470)
+...+..|..+++.|++..|..-|+.++..-.. ..-..+++.+..++.+.+++..|++.-++.+..+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 345566777888899999999888886553221 0122345566666667777777777776666665
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 036577 138 LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEA-AALFTKLK 204 (470)
Q Consensus 138 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 204 (470)
++|.-....-..++...|+++.|+..|+++++.. +.|-.+-+.|+.+-.+..+..+. .++|..|.
T Consensus 288 -~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 288 -PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred -CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666666667777777777777666652 33344444444444444433332 45555554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.028 Score=51.89 Aligned_cols=65 Identities=15% Similarity=0.050 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD-L---YTYNILINCFCKMGRVSPGFVVLGRILRS 171 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~-~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 171 (470)
.+...|+.+..+|.+.|++++|+..|++.++.+ |+ . .+|..+..+|...|+.++|++.+++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 478889999999999999999999999988764 44 3 35888999999999999999999998875
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.32 Score=42.22 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=25.2
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 036577 223 CRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMK 280 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 280 (470)
...|++.+|..+|+...... +.+...-..++.+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555554443 2233444445555555555555555555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.5 Score=43.44 Aligned_cols=130 Identities=19% Similarity=0.185 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHH
Q 036577 179 TFNSLIKGLCAESRIMEAAALFTKLKAFG-CEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYT 257 (470)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (470)
+|..++....+..-++.|..+|-++.+.| +.+++..+++++.-++ .|+...|..+|+.-...- +.++..-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-------~d~~~y~~ 470 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-------PDSTLYKE 470 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-------CCchHHHH
Confidence 44555555555566666666666666655 4455666666665554 455566666666544432 22333334
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 258 TIIDGLCKEGFVDKAKELFLKMKDENINPN--VVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 258 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
..+..+...++-+.|..+|+....+ +..+ ...|..+|..-..-|+...+..+-+.|.+.
T Consensus 471 kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 4455555566666666666644332 1111 345555665555566666555555555443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.22 Score=43.13 Aligned_cols=143 Identities=14% Similarity=0.018 Sum_probs=98.6
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 036577 80 GDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 80 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
.....+++.+|..+|.......+. +..+--.++.+|...|+.+.|..++..+....-.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456778899999999999988887 566777889999999999999999988766532222223233455666666666
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCcchHHHHHHHHHhcC
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGC-EPNVITYSTLINGLCRTG 226 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g 226 (470)
+..++-.+.-.. +.|...-..+...+...|+.++|.+.+-.+.+... .-|...-..++..+.-.|
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 666666665543 44777777888889999999999887777665421 123344455555555444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.047 Score=41.46 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=35.8
Q ss_pred cCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 036577 249 CEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-NINPNVVTYNSLIHGFC 299 (470)
Q Consensus 249 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~ 299 (470)
..|+..+..+++.+|+..|++..|+++.+...+. +++.+...|..|+.-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5677777777777777777777777777776554 56666677777665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.046 Score=41.50 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHhHHHHHHHHHH
Q 036577 388 RCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK-GIKPDVVIYNTLFIGLF 439 (470)
Q Consensus 388 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 439 (470)
...|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|+.=+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34577888888888888888888888888877654 66666778888775433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.083 Score=46.30 Aligned_cols=155 Identities=12% Similarity=-0.023 Sum_probs=114.8
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCcc
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST---GLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
..|+..+|-..++++++..|. +..+++..=.++...|+...-...++++... +++-..+....+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457889999999999999887 8889999999999999999999999988765 22222344445556677899999
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHH
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCE---PNVITYSTLINGLCRTGHTIVALNLFE 236 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~ 236 (470)
+|.+.-++.++.+ +-|...-.++...+-..|++.++.+...+-...--. .-...|=...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999988875 567788888888888999999999877654321000 001112222334566799999999998
Q ss_pred HHHh
Q 036577 237 EMAN 240 (470)
Q Consensus 237 ~~~~ 240 (470)
.-.-
T Consensus 272 ~ei~ 275 (491)
T KOG2610|consen 272 REIW 275 (491)
T ss_pred HHHH
Confidence 7543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.25 Score=45.93 Aligned_cols=147 Identities=13% Similarity=0.110 Sum_probs=103.6
Q ss_pred ChhHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 86 TPNEAFCIFDYML---NMRPSPPPVSSFNILFGCLAK---------NKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (470)
Q Consensus 86 ~~~~A~~~f~~~~---~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 153 (470)
..+.|+.+|+++. ..+|. ...+|..+..++.. .....+|.++-++..+.+ +.|......+..+..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~--~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTL--KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcc--cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4678999999999 55554 56666665555443 234557788888888887 778889888888888
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHH
Q 036577 154 KMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPN---VITYSTLINGLCRTGHTIV 230 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~ 230 (470)
-.++++.|..+|++....+ +....+|....-...-.|+.++|.+.+++..+.. |. .......+..|+. ...++
T Consensus 350 ~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~~~~~~~~~~~~~~-~~~~~ 425 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRKAVVIKECVDMYVP-NPLKN 425 (458)
T ss_pred hhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhHHHHHHHHHHHHcC-Cchhh
Confidence 8899999999999998864 4445666666666667999999999999976643 33 2223333445554 44677
Q ss_pred HHHHHHHHH
Q 036577 231 ALNLFEEMA 239 (470)
Q Consensus 231 a~~~~~~~~ 239 (470)
|+++|-+-.
T Consensus 426 ~~~~~~~~~ 434 (458)
T PRK11906 426 NIKLYYKET 434 (458)
T ss_pred hHHHHhhcc
Confidence 777765543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.56 Score=41.84 Aligned_cols=128 Identities=16% Similarity=0.136 Sum_probs=67.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCCH----
Q 036577 257 TTIIDGLCKEGFVDKAKELFLKMKDE-----NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----GVQPNV---- 323 (470)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~---- 323 (470)
.++..++...+.++++++.|+...+. +......++..|-..|.+..|+++|.-...+..+. ++..=.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34555556666666676666665442 11122345666666667777776666554443321 111001
Q ss_pred -hHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 036577 324 -VTFNVIMDELCKNGKMDEASRLLDLMIQI----GVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSM 384 (470)
Q Consensus 324 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (470)
.....|.-++...|+...|.+.-++..+. |-++ -......+.+.|...|+.+.|+.-|+..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 11223344566667766666666654432 3221 1233455667777777777776666553
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.74 Score=42.45 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCCCC----HhHHHHHHHH--HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 036577 344 RLLDLMIQIGVRPN----AFVYNTLMDG--FCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYS 417 (470)
Q Consensus 344 ~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 417 (470)
.+-+-+.+.|+.|- ...-|.|.++ +...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|.+++.
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333445566543 2333444433 4568999998876666655 47899999999999999999999999998
Q ss_pred HHHHCCCCCCHhHHHHH
Q 036577 418 EMLSKGIKPDVVIYNTL 434 (470)
Q Consensus 418 ~~~~~~~~p~~~~~~~l 434 (470)
.+ +|+..++++-
T Consensus 520 ~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 520 KL-----PPNERMRDSK 531 (549)
T ss_pred hC-----CCchhhHHHH
Confidence 65 6777777653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.96 Score=43.64 Aligned_cols=202 Identities=19% Similarity=0.206 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH--
Q 036577 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALF-- 200 (470)
Q Consensus 123 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-- 200 (470)
+-+.+.-++++.++|-.|+... +...++-.|++.+|-++|.+ .|.. |..+.+|.....++.|.+++
T Consensus 616 ~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhc
Confidence 3344555567778887677643 34455667777777777754 2221 12233344444444444333
Q ss_pred ----------HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH------HHHhcCCCCCcccCCCHhhHHHHHHHHH
Q 036577 201 ----------TKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFE------EMANGNGEIGVVCEPNTVTYTTIIDGLC 264 (470)
Q Consensus 201 ----------~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (470)
++-.+. ..+..-=.+....+...|+..+|..+.- -+.+.++.. ...+..+...+...+-
T Consensus 684 g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl---d~~ere~l~~~a~ylk 758 (1081)
T KOG1538|consen 684 GDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL---DKAEREPLLLCATYLK 758 (1081)
T ss_pred CChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc---chhhhhHHHHHHHHHh
Confidence 221111 1122112234455566777777665532 112222111 1344556666666666
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-----------hHHHHHHHHH
Q 036577 265 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV-----------VTFNVIMDEL 333 (470)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~l~~~~ 333 (470)
+...+.-|-++|..|-+. ..+++.+...++|++|..+-+...+. .||+ .-|...-.+|
T Consensus 759 ~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 759 KLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred hccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHH
Confidence 777888888998887643 35678889999999999988776543 3332 1234445678
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 036577 334 CKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~ 352 (470)
.+.|+-.+|..+++++...
T Consensus 828 hkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 828 HKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHhcchHHHHHHHHHhhhh
Confidence 8888888888888887654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.83 Score=42.08 Aligned_cols=129 Identities=16% Similarity=0.260 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIG-VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSY-SILIN 401 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~ 401 (470)
..|...+.+-.+..-++.|..+|-+..+.+ ..+++..+++++..++ .|+...|..+|+.-... -||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 345566666777788889999999998888 5678888899988776 78888999999765554 2344433 55666
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 402 GYCKNKEIEGALSLYSEMLSKGIKPD--VVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+...++-+.|..+|+..+++ +..+ ..+|..++.--..-|+...+..+-++|.+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 778889999999999976653 2223 45888888888888998888877777765
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.43 Score=45.89 Aligned_cols=163 Identities=17% Similarity=0.157 Sum_probs=105.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH------hHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhH
Q 036577 291 YNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV------VTFNVIMDELCK----NGKMDEASRLLDLMIQIGVRPNAFV 360 (470)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 360 (470)
+..++....-.||-+.+++.+.+..+.+---.+ -.|..++..++. ..+.+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344566666678888888888776654311111 223344433332 45678899999999886 456555
Q ss_pred HHH-HHHHHHcCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 036577 361 YNT-LMDGFCLTGRVNRAKELFVSMESNR---CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 436 (470)
Q Consensus 361 ~~~-l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 436 (470)
|.. -.+.+...|++++|.+.|+...... .......+--++.++...++|++|.+.|..+.+..-. +..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 543 3466778899999999998765421 1113445666778888999999999999999875322 3444444443
Q ss_pred -HHHhcCCH-------HHHHHHHHHHHH
Q 036577 437 -GLFEIHQV-------ERAFKLFDEMRR 456 (470)
Q Consensus 437 -~~~~~g~~-------~~A~~~~~~m~~ 456 (470)
++...|+. ++|.++|+++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33456877 888888888763
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.049 Score=46.57 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC--CCCHHHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFP---DLYTYNILINCFCKMGRVSPGFVVLGRILRSCF--TPDAVTFN 181 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~ 181 (470)
...|+.-+. +.+.|++..|.+.|...++.. +. ....+..|..++...|++++|..+|..+.+.-. +.-...+-
T Consensus 142 ~~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 142 TKLYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred hHHHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 346665555 456788999999999988763 22 234667788999999999999999999887421 12246677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 036577 182 SLIKGLCAESRIMEAAALFTKLKAF 206 (470)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (470)
-|..+..+.|+.++|...|+++.+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7888888999999999999998875
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.25 Score=41.48 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 036577 257 TTIIDGLCKEGFVDKAKELFLKMKDE---NINPNVVTYNSLIHGFCYANDWNEAKCLL 311 (470)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 311 (470)
...|-.+....++..|.+.++.-.+. .-..+..+...|+.+| ..||.+++..++
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 33334444445666666666553322 1122444555555554 345555554443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.11 Score=49.11 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=103.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
.++++++.+..+.- +.-|. .+..-.+.+++.+-+.|..+.|+++-. |.. .-.....+.|+++.|.+
T Consensus 274 ~~d~~~v~~~i~~~-~ll~~-i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 274 RGDFEEVLRMIAAS-NLLPN-IPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALE 339 (443)
T ss_dssp TT-HHH-----HHH-HTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHH
T ss_pred cCChhhhhhhhhhh-hhccc-CChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHH
Confidence 45777766655411 11122 235668899999999999999988743 332 22345568899998877
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 036577 164 VLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (470)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 243 (470)
+.+. ..+...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+.....+
T Consensus 340 ~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~- 403 (443)
T PF04053_consen 340 IAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG- 403 (443)
T ss_dssp HCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 6544 34778999999999999999999999988764 5667777888999988888888777665
Q ss_pred CCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 036577 244 EIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKM 279 (470)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 279 (470)
-++....++...|+.++..+++.+.
T Consensus 404 -----------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 -----------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2455556666678888888777544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.25 Score=46.73 Aligned_cols=160 Identities=14% Similarity=0.080 Sum_probs=99.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 220 NGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 299 (470)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 299 (470)
....-.++++++.++.+.-.-.. .-+..-.+.++..+.+.|..+.|+++..+-.. -.....
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-------~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl 329 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-------NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELAL 329 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-------G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-------cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHH
Confidence 33445778888777665221111 11244577888888888888888887643322 234556
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHH
Q 036577 300 YANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKE 379 (470)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 379 (470)
+.|+.+.|.++..+ ..+...|..|.....+.|+++-|.+.+.+... +..|+-.|.-.|+.+.-.+
T Consensus 330 ~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 78888888776543 34677888888888888888888888877642 4556666777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 380 LFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
+.+.....| -++....++...|+.++..+++.+.
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 877776665 2566666677778888887776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.17 Score=46.83 Aligned_cols=66 Identities=17% Similarity=0.092 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc----hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036577 174 TPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVI----TYSTLINGLCRTGHTIVALNLFEEMANG 241 (470)
Q Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 241 (470)
+.+...++.+..+|...|++++|+..|++..+. .|+.. +|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778888888999999999999999888775 46643 4888888899999999999999888764
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.15 Score=46.15 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=67.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036577 323 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILING 402 (470)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (470)
..++..+..+|.+.+++.+|+..-+..++.+.. |...+-.=..++...|+++.|+..|+.+.+.. +-|...-+.++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345666777888888888888888888877644 66666667778888888888888888887763 3355555556655
Q ss_pred HHHcCChhH-HHHHHHHHHH
Q 036577 403 YCKNKEIEG-ALSLYSEMLS 421 (470)
Q Consensus 403 ~~~~g~~~~-A~~~~~~~~~ 421 (470)
-.+..+..+ ..++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 555554433 3567777764
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.86 Score=42.53 Aligned_cols=81 Identities=19% Similarity=0.099 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 036577 339 MDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSE 418 (470)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 418 (470)
..+|.++-++..+.+.. |+.....+..+....|+++.|...|++....+ +....+|......+.-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44556666666666544 66666666666666666777777777666653 23445555555556666777777777766
Q ss_pred HHH
Q 036577 419 MLS 421 (470)
Q Consensus 419 ~~~ 421 (470)
..+
T Consensus 398 alr 400 (458)
T PRK11906 398 SLQ 400 (458)
T ss_pred Hhc
Confidence 554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.6 Score=41.85 Aligned_cols=115 Identities=9% Similarity=0.052 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCcchHHHHHH
Q 036577 88 NEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC-KMGRVSPGFVVLG 166 (470)
Q Consensus 88 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~ 166 (470)
+.+..+++.++...|. --.-|......-.+.|..+.+..+|++-+. +++.....|...+.-+. ..|+.+.....|+
T Consensus 62 ~~~r~~y~~fL~kyPl--~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPL--CYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHhhCcc--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4555555555555543 344455555555556666666666665554 34444445544443332 2344444455555
Q ss_pred HHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036577 167 RILRS-CFT-PDAVTFNSLIKGLCAESRIMEAAALFTKLKA 205 (470)
Q Consensus 167 ~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 205 (470)
..... |.. -+...|...|..-..++++.....+|+++++
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 55442 111 1234455555555555556666666665554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.36 Score=46.37 Aligned_cols=167 Identities=15% Similarity=0.123 Sum_probs=109.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 036577 217 TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELFLKMKDENINPNVVTYN 292 (470)
Q Consensus 217 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 292 (470)
.++....-.||-+.+++.+.+..+..+..+.....-...|...+..++. ....+.|.++++.+... -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 3444555679999999999988765431110001111234444444443 45678899999999886 46666665
Q ss_pred HH-HHHHHccCCHHHHHHHHHHHHHCCC---CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH-HH
Q 036577 293 SL-IHGFCYANDWNEAKCLLIEMMDQGV---QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLM-DG 367 (470)
Q Consensus 293 ~l-i~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~ 367 (470)
.. .+.+...|+.++|++.|++...... +.....+--++..+.-.+++++|...+..+.+..- .+..+|.-+. .+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHH
Confidence 44 3566788999999999997654210 12334455667778889999999999999998642 2444454443 33
Q ss_pred HHcCCCH-------HHHHHHHHHHHH
Q 036577 368 FCLTGRV-------NRAKELFVSMES 386 (470)
Q Consensus 368 ~~~~g~~-------~~A~~~~~~~~~ 386 (470)
+...|+. ++|.++|.++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4566777 888888877643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.93 Score=38.68 Aligned_cols=176 Identities=12% Similarity=0.067 Sum_probs=88.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH--
Q 036577 260 IDGLCKEGFVDKAKELFLKMKDENI--NPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK-- 335 (470)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 335 (470)
+..-.+.|++++|.+.|+.+..... +-...+.-.++.++.+.+++++|+..+++..+.-.......|...|.+++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 3444567888888888888776521 223445556667777888888888888877765322222234333443332
Q ss_pred -----cCCHH---HHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036577 336 -----NGKMD---EASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNK 407 (470)
Q Consensus 336 -----~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 407 (470)
..+.. +|..-|+++++. -||. .-...|......+... -...=..+.+.|.+.|
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~ 181 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA----LAGHEMAIARYYLKRG 181 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 11222 223333333332 1111 1111111111111100 0011123555677777
Q ss_pred ChhHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 408 EIEGALSLYSEMLSKGIKPDV---VIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
.+..|..-+++|++. .+-+. ..+-.+..+|...|..++|.+.-+-+.
T Consensus 182 ~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 182 AYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred ChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 777777777777765 22222 234445577777777777766544443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.49 Score=36.48 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=22.6
Q ss_pred cCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 370 LTGRVNRAKELFVSMESNRC--MHDVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+.|++++|.+.|+.+...-. +-....--.++.+|.+.|++++|...+++.++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34445555555444444310 01223333444444455555555555554444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.99 Score=38.06 Aligned_cols=107 Identities=7% Similarity=-0.009 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKG 186 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (470)
...|..-..+|...+++++|...+.+..+- ...+...| ... ..++.|.-+..++.+. +.-+..|+--..+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-hAA------KayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-HAA------KAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-HHH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 445666666777778888887777665532 11121111 111 1223444444444432 2223445556667
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 036577 187 LCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (470)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 239 (470)
|..+|..+.|-..+++.-+. ...-+.++|+++|++..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRAL 137 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHH
Confidence 77777777766666654331 13445566666666543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.28 Score=36.74 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=48.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCC
Q 036577 332 ELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVF---SYSILINGYCKNKE 408 (470)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 408 (470)
+.+..|+.+.|++.|.+.+..-++ ....||.-..++.-.|+.++|.+-+++..+.....+.. .|-.-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 445566666666666666655332 55566666666666666666666665555532122221 12222333445566
Q ss_pred hhHHHHHHHHHHHCC
Q 036577 409 IEGALSLYSEMLSKG 423 (470)
Q Consensus 409 ~~~A~~~~~~~~~~~ 423 (470)
-+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666555544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.34 Score=42.67 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=105.9
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHHcCCH
Q 036577 264 CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV----VTFNVIMDELCKNGKM 339 (470)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~ 339 (470)
-..|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++...= .+|. ..-.....++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467888888888888875 56677788888888889999888888888887541 2232 2223344456678999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 036577 340 DEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN---RCMHDVFSYSILINGYCKNKEIEGALSLY 416 (470)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (470)
++|++.-++..+.+.. |...-.++...+--.|+..++.++..+-... +-..-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999988888877643 6677777777888889999998887654331 00001222333444556678899999998
Q ss_pred HHHH
Q 036577 417 SEML 420 (470)
Q Consensus 417 ~~~~ 420 (470)
+.=+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.72 E-value=2.6 Score=42.22 Aligned_cols=54 Identities=9% Similarity=0.154 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 397 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 454 (470)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (470)
.-++..+.+..+++.+..+.+..-+ . ++..|..++..+.+.+..+.-.+..+++
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~---~-~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGK---E-DPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCc---c-ChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 3466677778888888888777632 3 7888888998888888665555444444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.26 Score=42.29 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=69.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC--CCCCHHHH
Q 036577 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN--INPNVVTY 291 (470)
Q Consensus 214 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~ 291 (470)
.|+.-+.. .+.|++.+|...|....+..+.. .-....+..|..++...|+++.|..+|..+.+.- .+--+..+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s----~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNS----TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCC----cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 35555444 45777888888888888877432 2334566778888888888888888888877641 11123556
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
--|..+..+.|+.++|...|++..+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 66677777888888888888888776
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.77 Score=35.82 Aligned_cols=42 Identities=14% Similarity=0.054 Sum_probs=19.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 036577 294 LIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN 336 (470)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (470)
++..+.+.+........++.+...+ ..+....+.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3344444444445555555444443 23444444455544443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.35 Score=43.11 Aligned_cols=207 Identities=11% Similarity=0.019 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHH----HHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCC---cch
Q 036577 144 TYNILINCFCKMGRVSPGFVVL----GRILRSC-FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAF-GCEPN---VIT 214 (470)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~----~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-g~~~~---~~~ 214 (470)
++..+..+.++.|.+++++..- +...+.. ..---..|..+.+++-+.-++.+++.+-+.-... |..+. -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4455555566666655544321 1111110 0001234455556666666666666665554332 22221 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHh----CCCCCCHHH
Q 036577 215 YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKD----ENINPNVVT 290 (470)
Q Consensus 215 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~ 290 (470)
..++..++...+.++++++.|+...+.....+. ......++..|...|.+..++++|.-+..+..+ .++..=..-
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D-~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDD-AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC-ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 345667777778889999998887654422110 122345788899999999999998877666543 222211112
Q ss_pred HHH-----HHHHHHccCCHHHHHHHHHHHHH----CCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036577 291 YNS-----LIHGFCYANDWNEAKCLLIEMMD----QGVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQ 351 (470)
Q Consensus 291 ~~~-----li~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 351 (470)
|.. |.-++...|....|.+.-++..+ .|-.+ -......+.+.|...|+.+.|+.-|+....
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 222 23345667777777777776544 34222 223456677889999999998888877543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.58 E-value=2.6 Score=41.31 Aligned_cols=62 Identities=16% Similarity=0.248 Sum_probs=34.7
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 358 AFVYNTLMDGFCLTGRVNRAKELFVSMESN-RCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
...|..|.+-....|.++.|.+.--.+.+. .+.|....|+.+.-+-+....+...-+.|-++
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 344455555556678888877654433321 34566777777766655554454444444443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.42 Score=36.83 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 110 FNILFGCLAKNKHYDTVLSLFKRLNSTG--LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGL 187 (470)
Q Consensus 110 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (470)
+-.-.....+.|++++|.+.|+.+..+- -+-...+-..++.+|.+.+++++|...+++.++........-|...+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3334444556677777777777766651 01123445556666677777777777777766653222223344444444
Q ss_pred H
Q 036577 188 C 188 (470)
Q Consensus 188 ~ 188 (470)
+
T Consensus 93 ~ 93 (142)
T PF13512_consen 93 S 93 (142)
T ss_pred H
Confidence 3
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.017 Score=32.23 Aligned_cols=32 Identities=13% Similarity=0.399 Sum_probs=26.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 036577 94 FDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVL 127 (470)
Q Consensus 94 f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 127 (470)
|+++++.+|. ++.+|+.+...+...|++++|+
T Consensus 2 y~kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 5667777776 8889999999999999988885
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.039 Score=32.95 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 109 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148 (470)
Q Consensus 109 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 148 (470)
+|..+...|.+.|++++|.++|++.++.. +.|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 45566666666666666666666666653 4444444433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.7 Score=38.67 Aligned_cols=166 Identities=11% Similarity=0.062 Sum_probs=81.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcch-------HHHHHHHHHhcC-ChHHHHHHHHHHHhc----CCCCCcccCCC---
Q 036577 188 CAESRIMEAAALFTKLKAFGCEPNVIT-------YSTLINGLCRTG-HTIVALNLFEEMANG----NGEIGVVCEPN--- 252 (470)
Q Consensus 188 ~~~g~~~~a~~~~~~~~~~g~~~~~~~-------~~~l~~~~~~~g-~~~~a~~~~~~~~~~----~~~~~~~~~~~--- 252 (470)
.+.|+++.|..++.+........++.. +..+.......+ ++++|...+++..+. +.... ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~--~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK--LSPDGSE 81 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc--cCCcHHH
Confidence 356777777777776654321112221 122222333455 777777777666543 11000 1222
Q ss_pred --HhhHHHHHHHHHhCCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 036577 253 --TVTYTTIIDGLCKEGFVD---KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFN 327 (470)
Q Consensus 253 --~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 327 (470)
..++..++.+|...+..+ +|.++++.+.... +-...++..-+..+.+.++.+++.+++.+|+..-.. ....+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~ 159 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHH
Confidence 234556666676666543 4555555554432 222344444556666677777777777777765211 223344
Q ss_pred HHHHHHHH--cCCHHHHHHHHHHHHHcCCCCC
Q 036577 328 VIMDELCK--NGKMDEASRLLDLMIQIGVRPN 357 (470)
Q Consensus 328 ~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~ 357 (470)
.++..+.. ......|...+..++...+.|.
T Consensus 160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 160 SILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 44443311 1223445555555544434433
|
It is also involved in sporulation []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.75 Score=34.66 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=25.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV 354 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 354 (470)
+......|+-++-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|.
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344444555555555555544322 44444455555555555555555555555544443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.99 Score=35.86 Aligned_cols=122 Identities=16% Similarity=0.124 Sum_probs=52.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHhcCCHH
Q 036577 119 KNKHYDTVLSLFKRLNSTGLFPDLY-TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV-TFNSL--IKGLCAESRIM 194 (470)
Q Consensus 119 ~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~ 194 (470)
+.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-.....|-.. -...| .-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3444555555555555544221111 11222233445555555555555554432222211 00111 11233455555
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 195 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 195 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
+.....+.+-..+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555555554433222223333444444555666666666655544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.45 E-value=3 Score=41.22 Aligned_cols=106 Identities=12% Similarity=0.159 Sum_probs=59.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC
Q 036577 293 SLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG 372 (470)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 372 (470)
--+.-+...|+-.+|.++-.+.+ -||-..|-.-+.+++..+++++-+++-.... .+.-|.-...+|.+.|
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 33444455566666665555544 5566666666666666666665444433322 1344555666666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 036577 373 RVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYS 417 (470)
Q Consensus 373 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 417 (470)
+.++|.+++.+... . .-...+|.+.|++.+|.++--
T Consensus 759 n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHH
Confidence 77777666544321 1 145556666676666666543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.29 E-value=2 Score=38.20 Aligned_cols=226 Identities=13% Similarity=0.121 Sum_probs=127.1
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCcccCCCHh-----hHHHHHHHHHhCC-CHHHHHHHHHHHHhC--------CCCCCH
Q 036577 223 CRTGHTIVALNLFEEMANGNGEIGVVCEPNTV-----TYTTIIDGLCKEG-FVDKAKELFLKMKDE--------NINPNV 288 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g-~~~~a~~~~~~~~~~--------~~~~~~ 288 (470)
.+.|+.+.|..++.+....... ..|+.. .+..........+ +++.|..++++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~----~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~ 79 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNS----LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG 79 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhc----CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcH
Confidence 4689999999999998765411 133322 1222223334455 888888887765432 122332
Q ss_pred -----HHHHHHHHHHHccCCHH---HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhH
Q 036577 289 -----VTYNSLIHGFCYANDWN---EAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFV 360 (470)
Q Consensus 289 -----~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 360 (470)
.++..++.+|...+..+ +|..+++.+.... +-.+..+..-+..+.+.++.+++.+.+.+|+..-.- ....
T Consensus 80 ~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~ 157 (278)
T PF08631_consen 80 SELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESN 157 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccch
Confidence 45677888888887654 5566666665442 223455555577777789999999999999987321 2334
Q ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHHHCCCCCCHHHH-H-HHHHH---HHHcCC------hhHHHHHHHHHHHC-CCC
Q 036577 361 YNTLMDGF---CLTGRVNRAKELFVSMESNRCMHDVFSY-S-ILING---YCKNKE------IEGALSLYSEMLSK-GIK 425 (470)
Q Consensus 361 ~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~-~l~~~---~~~~g~------~~~A~~~~~~~~~~-~~~ 425 (470)
+..++..+ .. .....|...+..++...+.|....| . .++.. ....++ .+...++++..... +.+
T Consensus 158 ~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ 236 (278)
T PF08631_consen 158 FDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQ 236 (278)
T ss_pred HHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCC
Confidence 44444444 33 3345666666666655455544311 1 11111 112222 33344444432221 222
Q ss_pred CCHhH---HHHH----HHHHHhcCCHHHHHHHHHHHH
Q 036577 426 PDVVI---YNTL----FIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 426 p~~~~---~~~l----~~~~~~~g~~~~A~~~~~~m~ 455 (470)
.+..+ ..+| ...+.+.+++++|.++|+-..
T Consensus 237 ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 237 LSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 23222 2222 355678899999999998654
|
It is also involved in sporulation []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.15 E-value=1 Score=34.01 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 036577 394 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGV 459 (470)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (470)
...+..+..+...|+-|.-.+++.++.+ .-.+++.....+..||.+.|+..++.++++++-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444555555666666666666666543 2244555555666666666666666666666666554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.9 Score=36.52 Aligned_cols=225 Identities=17% Similarity=0.041 Sum_probs=125.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCcccCCCHhhHHHHHHHHHhCC
Q 036577 190 ESRIMEAAALFTKLKAFGCEP-NVITYSTLINGLCRTGHTIVALNLFEEMANG-NGEIGVVCEPNTVTYTTIIDGLCKEG 267 (470)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (470)
.+....+...+.......... ....+......+...+++..+...+...... . .......+......+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 109 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELEL------LPNLAEALLNLGLLLEALG 109 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh------ccchHHHHHHHHHHHHHHh
Confidence 355555666665555432111 2455566666777777777777777776642 1 2455566666666777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHHcCCHHHHHH
Q 036577 268 FVDKAKELFLKMKDENINPNVVTYNSLIH-GFCYANDWNEAKCLLIEMMDQGV--QPNVVTFNVIMDELCKNGKMDEASR 344 (470)
Q Consensus 268 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~ 344 (470)
++..+.+.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 110 KYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred hHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 7777777777776643222 122222222 56677777777777777654211 0122233333334556667777777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 345 LLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.+..............+..+...+...++.+.|...+......... ....+..+...+...|..+++...+.+....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7776666532212455566666666666667777766666654211 1333344444444555566666666666543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.67 E-value=4 Score=38.53 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCM-HDVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
.+-..+..++.+.|+.++|.+.++++.+.... .+......|+.++...+.+.++..++.+-.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33345666677778888888888887654311 2344566778888888888888888777643
|
The molecular function of this protein is uncertain. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.66 E-value=2.4 Score=35.93 Aligned_cols=223 Identities=19% Similarity=0.056 Sum_probs=127.0
Q ss_pred CCcchHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCChHHHHH
Q 036577 156 GRVSPGFVVLGRILRSCFT-PDAVTFNSLIKGLCAESRIMEAAALFTKLKAF-GCEPNVITYSTLINGLCRTGHTIVALN 233 (470)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~a~~ 233 (470)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555544211 12456666666777777777777777666542 223344555556666666677777777
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHH-HHHhCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHHHHHHH
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIID-GLCKEGFVDKAKELFLKMKDENI--NPNVVTYNSLIHGFCYANDWNEAKCL 310 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~ 310 (470)
.+........ .+......... .+...|+++.|...++....... ......+......+...++.+.+...
T Consensus 117 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 117 LLEKALALDP-------DPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred HHHHHHcCCC-------CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 7777765441 11222222233 56677777777777777644211 11233333344445566777777777
Q ss_pred HHHHHHCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 311 LIEMMDQGVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 311 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
+....... +. ....+..+...+...++++.+...+......... ....+..+...+...+..+.+...+......
T Consensus 190 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 190 LEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77776653 22 3455666666777777777777777777665322 2333344444444556677777777666654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.66 E-value=1.2 Score=35.05 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=33.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST 136 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 136 (470)
.++.+++..+++.+.-..|..+...++... .+...|+|.+|+++|+++...
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence 346777777777777777764444444433 345677777777777777655
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.52 Score=41.17 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHhHHHH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLS-----KGIKPDVVIYNT 433 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 433 (470)
.++..++..+..+|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 445667777777777888877777777764 44777777888888888888888777776654 477777776666
Q ss_pred HHHH
Q 036577 434 LFIG 437 (470)
Q Consensus 434 l~~~ 437 (470)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.15 Score=30.30 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=9.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
.+...|...|++++|+++|+++++
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.1 Score=38.55 Aligned_cols=104 Identities=20% Similarity=0.274 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHH
Q 036577 105 PPVSSFNILFGCLAK-----NKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 179 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 179 (470)
.+..+|...+..+.. .+..+-....++.|.+.|+..|..+|+.|++.+-+-. +.|.. +
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-H
Confidence 455566666655543 3566667777888999999999999999987754322 12221 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 036577 180 FNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGH 227 (470)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 227 (470)
+....-.|- .+-+-+++++++|...|+-||-.+-..++.++.+.+.
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 222222221 2234567788888888888888888888888777665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.5 Score=41.27 Aligned_cols=73 Identities=8% Similarity=0.119 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhh
Q 036577 393 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR-----DGVAADTWTY 466 (470)
Q Consensus 393 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 466 (470)
..++..++..+...|+.+.+.+.++++...... +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 446778899999999999999999999987544 788999999999999999999999998864 6888876654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.12 E-value=4.1 Score=36.43 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--cC----CHHHHHHHHHHHHHCCC---CCCHhHHHHHHHHHHHcCC---
Q 036577 271 KAKELFLKMKDENINPNVVTYNSLIHGFCY--AN----DWNEAKCLLIEMMDQGV---QPNVVTFNVIMDELCKNGK--- 338 (470)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~--- 338 (470)
+...+++.+.+.|+.-+..+|-+....... .. ....+..+++.|++... .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 445555666666666555444432222221 11 23455666666665421 1222333333322 2222
Q ss_pred -HHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036577 339 -MDEASRLLDLMIQIGVRPN--AFVYNTLMDGFCLTGR--VNRAKELFVSMESNRCMHDVFSYSILI 400 (470)
Q Consensus 339 -~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (470)
.+.+..+|+.+.+.|+..+ ......++..+..... ..++.++++.+.+.++++....|..+.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 2334455555555554422 1222222222221111 335555666666666665555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.05 E-value=9.2 Score=40.21 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 036577 174 TPDAVTFNSLIKGLCAES--RIMEAAALFTKLKA 205 (470)
Q Consensus 174 ~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~ 205 (470)
.|+ .....+|..|.+.+ .+++++....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 344 44455667777766 56677666666654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.57 Score=40.32 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=69.0
Q ss_pred CCHhhHHHHHHHHHh-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----------------CHHHHHH
Q 036577 251 PNTVTYTTIIDGLCK-----EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN----------------DWNEAKC 309 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~~ 309 (470)
.|...|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+-. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 455566666655543 3567777777888999999999999999998765432 3356889
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 036577 310 LLIEMMDQGVQPNVVTFNVIMDELCKNGKM 339 (470)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 339 (470)
++++|...|+.||-.+-..++.++.+.+-.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 999999999999999999999999887653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.73 E-value=8.6 Score=38.78 Aligned_cols=47 Identities=6% Similarity=0.099 Sum_probs=20.5
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 036577 264 CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLL 311 (470)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 311 (470)
....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++..+..
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHH
Confidence 3333344444444444444432 3333344455555555544444433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.17 Score=28.48 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=10.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHH
Q 036577 396 YSILINGYCKNKEIEGALSLYSE 418 (470)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~ 418 (470)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.18 Score=27.80 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 430 IYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+|..+...+...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555556666666666655554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.64 E-value=2.7 Score=32.71 Aligned_cols=24 Identities=4% Similarity=0.130 Sum_probs=9.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 036577 113 LFGCLAKNKHYDTVLSLFKRLNST 136 (470)
Q Consensus 113 l~~~~~~~~~~~~A~~~~~~m~~~ 136 (470)
++..+...+.+......++.+...
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~ 36 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKL 36 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHcc
Confidence 333333333444444444444333
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.21 Score=28.15 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 430 IYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+|..|...|.+.|++++|++++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 477899999999999999999999653
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.39 E-value=1.4 Score=36.00 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=10.7
Q ss_pred hcCChHHHHHHHHHHHh
Q 036577 224 RTGHTIVALNLFEEMAN 240 (470)
Q Consensus 224 ~~g~~~~a~~~~~~~~~ 240 (470)
..+++.+|-+.|-....
T Consensus 125 ~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 125 AQRDFKEAAELFLDSLS 141 (177)
T ss_pred HhchHHHHHHHHHccCc
Confidence 45677777766666543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.33 E-value=7.4 Score=36.84 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 036577 328 VIMDELCKNGKMDEASRLLDLMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSM 384 (470)
Q Consensus 328 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (470)
.+..++-+.|+.++|++.++++.+..... +......|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34444455555555555555555432211 2223444555555555555555555554
|
The molecular function of this protein is uncertain. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.23 E-value=3.4 Score=32.66 Aligned_cols=112 Identities=18% Similarity=0.078 Sum_probs=59.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCh
Q 036577 331 DELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK-NKEI 409 (470)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 409 (470)
..-.+.++.+++..++..+.-..+. ....-..-...+...|++.+|+.+|+++.+.. |....-..|+..|.. .|+.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCCh
Confidence 3445677888888888888776443 22222233445667899999999998887653 322222333333333 3332
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 036577 410 EGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFK 449 (470)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 449 (470)
.=...-+++.+.+-.|+.. .|+..+....+...|..
T Consensus 95 -~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 95 -SWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred -HHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 2222334455544333332 44555555544444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.19 E-value=1.5 Score=35.81 Aligned_cols=97 Identities=11% Similarity=0.056 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCCCCHhHHHH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMH--DVFSYSILINGYCKNKEIEGALSLYSEMLSK---GIKPDVVIYNT 433 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~ 433 (470)
..+..++..|.+.|+.+.|.+.|.++.+....+ -...+-.+|......|++..+.....+.... |..++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345566666666677777777766666553333 2334455666666666666666666554432 11111111111
Q ss_pred HH--HHHHhcCCHHHHHHHHHHHH
Q 036577 434 LF--IGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 434 l~--~~~~~~g~~~~A~~~~~~m~ 455 (470)
.. -++...|++.+|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11 23345677777777765543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.19 E-value=3.7 Score=32.91 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=71.5
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 036577 309 CLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
+.+..+.+.+++|+...+..++..+.+.|++.. +..++..++-+|.......+-.+. +....+.++--.|...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 444455566677777777777777777776543 333444444455544443332222 2222333333333221
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 389 CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
-...+..+++.+...|++-+|+++.+..... +......++.+....+|...-..+++-+.+.
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0113556667777778887877777664221 1222244566666666666655555555543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.26 Score=27.06 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 430 IYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.|..+...+...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555566666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.05 E-value=3.8 Score=32.72 Aligned_cols=133 Identities=11% Similarity=0.046 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHh-HHHHH--
Q 036577 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVV-TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAF-VYNTL-- 364 (470)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l-- 364 (470)
..|..-++ ..+.+..++|+.-|.++.+.|...-+. ....+.....+.|+-..|...|+++-.....|-.. -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444333 245566677777777777655322111 11222334556677777777777776654333322 11111
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 365 MDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.-.+...|.++......+-+...+-+.....-..|.-+-.+.|++.+|..+|..+...
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1223456666666666555544443333444455666666777777777777766653
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.99 E-value=14 Score=38.99 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=36.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHHHcC
Q 036577 260 IDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVV--TFNVIMDELCKNG 337 (470)
Q Consensus 260 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 337 (470)
..-+...+.+++|.-.|+..-+. .--+.+|..+|+|.+|+.+..++... .+.. +-..|+.-+...+
T Consensus 946 a~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 946 ADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQR 1013 (1265)
T ss_pred HHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcc
Confidence 33334455566665555444321 12345566666666666665554321 1111 1134444455555
Q ss_pred CHHHHHHHHHHH
Q 036577 338 KMDEASRLLDLM 349 (470)
Q Consensus 338 ~~~~a~~~~~~~ 349 (470)
++-+|-++..+.
T Consensus 1014 kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1014 KHYEAAKILLEY 1025 (1265)
T ss_pred cchhHHHHHHHH
Confidence 555554444443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.93 E-value=11 Score=37.71 Aligned_cols=99 Identities=9% Similarity=0.042 Sum_probs=61.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
.+.+++|+..-+......+.......+..++..+.-.|++++|-...-.|... +..-|...+..+...++....
T Consensus 369 ~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~I-- 442 (846)
T KOG2066|consen 369 KKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDI-- 442 (846)
T ss_pred hhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchh--
Confidence 34577777766655443332123556788888888889999988888888753 566777777777766665432
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036577 164 VLGRILRSCFTPDAVTFNSLIKGLCA 189 (470)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (470)
+.-+.......+..+|..++..+..
T Consensus 443 -a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 -APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred -hccCCCCCcccCchHHHHHHHHHHH
Confidence 2222222112355677777776665
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.73 E-value=2.8 Score=40.38 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=55.9
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHH
Q 036577 299 CYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAK 378 (470)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 378 (470)
.+.|+++.|.++..+. .+..-|..|..+....+++..|.+.|.+... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 4556666666554442 2455666777777777777776666665542 334444555566655544
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 379 ELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
.+-....+.| ..|....+|...|+++++.+++.+-
T Consensus 713 ~la~~~~~~g------~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQG------KNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhc------ccchHHHHHHHcCCHHHHHHHHHhc
Confidence 4444444433 1233344566677777777765543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.55 E-value=7.5 Score=34.81 Aligned_cols=132 Identities=12% Similarity=0.179 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH--cC----CHHHHHHHHHHHHHcCCC---CCHhHHHHHHHHHHcCCC-
Q 036577 304 WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK--NG----KMDEASRLLDLMIQIGVR---PNAFVYNTLMDGFCLTGR- 373 (470)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~- 373 (470)
+++...+++.+.+.|+.-+..+|-+....... .. ....|..+++.|.+..+- ++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556777888888877776665543332222 22 356788899999887442 345556655543 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 036577 374 ---VNRAKELFVSMESNRCMH-DV-FSYSILINGYCKNKE--IEGALSLYSEMLSKGIKPDVVIYNTLFIG 437 (470)
Q Consensus 374 ---~~~A~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 437 (470)
.+.++.+|+.+.+.|... |. ...+.++..+..... ...+.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 356778888888877665 33 333333332222222 44678888899888888877776655433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.32 E-value=4.9 Score=32.19 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=13.3
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 036577 132 RLNSTGLFPDLYTYNILINCFCKMGRV 158 (470)
Q Consensus 132 ~m~~~~~~~~~~~~~~li~~~~~~g~~ 158 (470)
.+.+.+++|+...+..++..+.+.|++
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 333444455555555555555555543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.21 E-value=13 Score=36.84 Aligned_cols=274 Identities=14% Similarity=0.072 Sum_probs=168.6
Q ss_pred cchHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------cCCCCCcchHHHHHHHHHhc
Q 036577 158 VSPGFVVLGRILRSCFTPDAVTFNSLIKG-----LCAESRIMEAAALFTKLKA-------FGCEPNVITYSTLINGLCRT 225 (470)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~g~~~~~~~~~~l~~~~~~~ 225 (470)
...|.++++...+.| +...-..+..+ +....+.+.|+..|+.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 356888888888876 33333333333 3456789999999998876 44 444666777777764
Q ss_pred C-----ChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 226 G-----HTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK-EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 299 (470)
Q Consensus 226 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 299 (470)
. +.+.|..++......+ .|+.......+..... ..+...|.++|...-..|.. ..+-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~ 371 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYE 371 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHH
Confidence 3 6677999999998877 5665554444433333 34678999999999988742 33333333332
Q ss_pred ----ccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH----Hc-
Q 036577 300 ----YANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF----CL- 370 (470)
Q Consensus 300 ----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~- 370 (470)
...+.+.|..++.+..+.| .|...--...+..+.. ++++.+...+..+.+.+.. ...+-...+..- ..
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~ 448 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFS 448 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccc
Confidence 2347889999999999887 3332222222333333 7888888777777776654 222222221111 11
Q ss_pred ---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH----
Q 036577 371 ---TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN----KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF---- 439 (470)
Q Consensus 371 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---- 439 (470)
..+.+.+...+.+....| +......+.+.|... .+++.|...+.....++ ...+|+ +...+.
T Consensus 449 ~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g 521 (552)
T KOG1550|consen 449 RGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEG 521 (552)
T ss_pred cccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcC
Confidence 225677777777777666 666667777766554 35788888888877765 222332 221111
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 036577 440 EIHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~g 458 (470)
..+ +..|.+++++..+.+
T Consensus 522 ~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 522 IKV-LHLAKRYYDQASEED 539 (552)
T ss_pred cch-hHHHHHHHHHHHhcC
Confidence 223 678888888877543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.06 E-value=2.7 Score=40.40 Aligned_cols=134 Identities=14% Similarity=0.094 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKG 186 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (470)
....+.++..+.++|-.++|+++- +|.... .....+.|+++.|.++..+. .+..-|..|.+.
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDA 675 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHH
Confidence 345567777777888777776642 332221 22335678888887776653 366778889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhC
Q 036577 187 LCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKE 266 (470)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 266 (470)
....+++..|.+.|.+... |..|+-.+...|+.+....+-....+.+ ..| .-.-+|...
T Consensus 676 al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-------~~N-----~AF~~~~l~ 734 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-------KNN-----LAFLAYFLS 734 (794)
T ss_pred HhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-------ccc-----hHHHHHHHc
Confidence 9999999999988877654 4456667777788776666666665554 222 233456677
Q ss_pred CCHHHHHHHHHHH
Q 036577 267 GFVDKAKELFLKM 279 (470)
Q Consensus 267 g~~~~a~~~~~~~ 279 (470)
|+++++.+++..-
T Consensus 735 g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 735 GDYEECLELLIST 747 (794)
T ss_pred CCHHHHHHHHHhc
Confidence 8888888877543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.91 E-value=13 Score=36.07 Aligned_cols=305 Identities=13% Similarity=0.051 Sum_probs=159.5
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCc
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLA-KNKHYDTVLSLFKRLNST-GLF-PDLYTYNILINCFCKMGRV 158 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~g~~ 158 (470)
.+.|..+.+.++|++.+..-|. ++..|......+. ..|+.+...++|+..... |.. .....|...|.--..++++
T Consensus 90 ~klg~~~~s~~Vfergv~aip~--SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~ 167 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQAIPL--SVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSW 167 (577)
T ss_pred HHhhhHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccH
Confidence 4578889999999999886664 7888877766554 557888888888887654 211 2344677777777777888
Q ss_pred chHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcC------CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 036577 159 SPGFVVLGRILRSCFTPDAVTFNSLIKGLC---AES------RIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTI 229 (470)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g------~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 229 (470)
.....+++++++. ...-|+....-|. ... ..+++.++-...... ..-...++..
T Consensus 168 k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~ 230 (577)
T KOG1258|consen 168 KRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPL 230 (577)
T ss_pred HHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChh
Confidence 8888888888864 2223333222221 111 111111111111100 0000111111
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCHhhHHHHHH-------HHHhCCCHHHHHHHHHHHHhC---CC----CCCHHHHHHHH
Q 036577 230 VALNLFEEMANGNGEIGVVCEPNTVTYTTIID-------GLCKEGFVDKAKELFLKMKDE---NI----NPNVVTYNSLI 295 (470)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~g~~~~a~~~~~~~~~~---~~----~~~~~~~~~li 295 (470)
+-.+ ..+...... .+.-....+.+-. ++-..-...+....|+.-... .+ .++..+|...+
T Consensus 231 e~~~--~~v~~~~~~----s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yL 304 (577)
T KOG1258|consen 231 EELE--IGVKDSTDP----SKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYL 304 (577)
T ss_pred HHHH--HHHhhccCc----cchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHh
Confidence 1111 111111100 0111111111111 111222233333334333332 11 23456777778
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHH
Q 036577 296 HGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVN 375 (470)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 375 (470)
.--.+.|+.+.+.-+|+...--- ..=...|-..+.-....|+.+-|..++....+.-.+-.+.+--.-....-..|+++
T Consensus 305 df~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~ 383 (577)
T KOG1258|consen 305 DFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFD 383 (577)
T ss_pred hhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHH
Confidence 88888889988888888776321 11123344444444455888888888877766544322222222222233468999
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChhHHHH
Q 036577 376 RAKELFVSMESNRCMHDV-FSYSILINGYCKNKEIEGALS 414 (470)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 414 (470)
.|..+++.+.+.- |+. ..-..-+....+.|..+.+..
T Consensus 384 ~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 384 DAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhH
Confidence 9999999887764 432 222333445566788777773
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.63 E-value=12 Score=35.36 Aligned_cols=99 Identities=10% Similarity=0.160 Sum_probs=74.7
Q ss_pred CCCHhHH-HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHHC-CCCCCHhH
Q 036577 355 RPNAFVY-NTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK--NKEIEGALSLYSEMLSK-GIKPDVVI 430 (470)
Q Consensus 355 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~-~~~p~~~~ 430 (470)
.|+..++ +.+++.+.+.|-..+|..++..+.... +|+...|..+++.-.. .-+...+.++++.|... | .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 3444443 567788888999999999999988763 6688888888765322 23378888899888764 5 58888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 431 YNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 431 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
|...+.--...|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 88888777789999998888877764
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.29 E-value=18 Score=36.46 Aligned_cols=47 Identities=9% Similarity=0.116 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 155 (470)
...| .+|-.|.++|++++|.++..+.... .......+...+..|...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3456 4566778899999999988555433 344455667777777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.3 Score=27.12 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.0
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHH
Q 036577 250 EPNTVTYTTIIDGLCKEGFVDKAK 273 (470)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~ 273 (470)
+-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 667888888888888888888875
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.67 E-value=20 Score=36.09 Aligned_cols=198 Identities=16% Similarity=0.136 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHh-CCCCCC--HHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCcc--
Q 036577 140 PDLYTYNILINCFCKMGRVSPGFVVLGRILR-SCFTPD--AVTFNSLIKGLC-AESRIMEAAALFTKLKAFGCEPNVI-- 213 (470)
Q Consensus 140 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~g~~~~~~-- 213 (470)
.+...|..||.. |++.++.+.+ ..++|. ..++-.+...+. ...+++.|+..+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 344555555533 3444555552 222332 334445555555 4667777777777654432222211
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHH-HHHHHhCCCHHHHHHHHHHHHhCC---CCC
Q 036577 214 ---TYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTI-IDGLCKEGFVDKAKELFLKMKDEN---INP 286 (470)
Q Consensus 214 ---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~ 286 (470)
.-..++..+.+.+... |...+++..+.....+ ..+-...+..+ +..+...+++..|.+.++.+...- ..|
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 1123445555555555 7777777655442110 01122222222 222223367777777777665431 223
Q ss_pred CHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHCC---------CCCCHhHHHHHHHHH--HHcCCHHHHHHHHHHH
Q 036577 287 NVVTYNSLIHGFC--YANDWNEAKCLLIEMMDQG---------VQPNVVTFNVIMDEL--CKNGKMDEASRLLDLM 349 (470)
Q Consensus 287 ~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~ 349 (470)
-..++..++.+.. +.+..+++.+.++.+.... ..|...+|..++..+ ...|+++.+...++++
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444332 4455566666666553221 123445555555533 4566655655555444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.35 E-value=5 Score=35.40 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=53.2
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHh
Q 036577 283 NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQG---VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAF 359 (470)
Q Consensus 283 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 359 (470)
|.+....+...++..-....+++.+...+-++.... ..++. +-...+..+ -.-++++++.++..=+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 333344444445544445556666666665554321 01111 111122222 2234556666666666666666777
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 360 VYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
+++.+++.+.+.+++.+|..+.-.|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777766666666555443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.22 E-value=17 Score=34.58 Aligned_cols=92 Identities=12% Similarity=0.152 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 036577 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 368 (470)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (470)
....+++..+.++..+.-...+..+|...| .+-..|..++.+|... ..++-..+++++.+..+. |...-..|+..|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 334444444444444444444555554442 1333444444555444 333444455544444332 322223333333
Q ss_pred HcCCCHHHHHHHHHHHH
Q 036577 369 CLTGRVNRAKELFVSME 385 (470)
Q Consensus 369 ~~~g~~~~A~~~~~~~~ 385 (470)
-+ ++.+++..+|..+.
T Consensus 143 Ek-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 143 EK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HH-hchhhHHHHHHHHH
Confidence 22 44444444444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.5 Score=38.86 Aligned_cols=98 Identities=11% Similarity=0.000 Sum_probs=72.8
Q ss_pred hccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 74 FKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (470)
Q Consensus 74 ~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 153 (470)
++-.|..++++|++++|+..|.......|. ++.++..-..+|.+.++|..|..-....+..+ ..-...|..-+.+--
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~--NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPH--NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARE 176 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCC--CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHH
Confidence 455678899999999999999998887775 78888888899999999988877777666543 222335555555556
Q ss_pred hcCCcchHHHHHHHHHhCCCCCC
Q 036577 154 KMGRVSPGFVVLGRILRSCFTPD 176 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~ 176 (470)
..|...+|.+-.+..++. .|+
T Consensus 177 ~Lg~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHhhHHHHHHhHHHHHhh--Ccc
Confidence 667777777777777764 454
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=5.4 Score=37.37 Aligned_cols=86 Identities=12% Similarity=0.032 Sum_probs=39.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 036577 334 CKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGAL 413 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 413 (470)
...|.++.+...+...... +.....+..++++...+.|++++|...-..|....+. +........-..-..|-+|++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 4455555555555444332 1123344445555555555555555555555444322 2222222222233344455555
Q ss_pred HHHHHHHH
Q 036577 414 SLYSEMLS 421 (470)
Q Consensus 414 ~~~~~~~~ 421 (470)
-.|+++..
T Consensus 412 ~~wk~~~~ 419 (831)
T PRK15180 412 HYWKRVLL 419 (831)
T ss_pred HHHHHHhc
Confidence 55555543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.86 E-value=5.8 Score=32.59 Aligned_cols=92 Identities=18% Similarity=0.144 Sum_probs=64.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVRPN----AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
..-+...|++++|..-|..++..-+... ...|..-..++.+.+.++.|+.-....++.+ +........-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 4456778889999888888888743222 2344455566778888888888887777765 2233444444567888
Q ss_pred cCChhHHHHHHHHHHHC
Q 036577 406 NKEIEGALSLYSEMLSK 422 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~~ 422 (470)
...+++|++=|+++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 88888888888888876
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.95 Score=26.15 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (470)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44445555555555555555554443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.84 E-value=3.9 Score=33.70 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=8.3
Q ss_pred CHhHHHHHHHHHHHcCCHHH
Q 036577 322 NVVTFNVIMDELCKNGKMDE 341 (470)
Q Consensus 322 ~~~~~~~l~~~~~~~g~~~~ 341 (470)
|+..+.+|+..+.+.|+++.
T Consensus 177 n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHHHhcchhh
Confidence 33444444444444444433
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.63 E-value=6.3 Score=32.51 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCCCCHhHHHHHHHHHHhcCCHHHHH
Q 036577 373 RVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK---GIKPDVVIYNTLFIGLFEIHQVERAF 448 (470)
Q Consensus 373 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~ 448 (470)
.-+.|.+.|-.+...+..-++.....+...|. ..+.++++.++.+.++. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 33677777777777665556666666665555 56788888888877753 33677888888888888888888874
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.58 E-value=1.2 Score=24.42 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 394 FSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.+|..+..+|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46778888888899999999988888764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.54 E-value=23 Score=35.10 Aligned_cols=77 Identities=14% Similarity=0.039 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCh
Q 036577 338 KMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT----GRVNRAKELFVSMESNRCMHDVFSYSILINGYCK----NKEI 409 (470)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 409 (470)
+.+.+...+......| +......+.+.|..- .+.+.|...+......+ ....-.+...+-. .. +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-h
Confidence 3444555555554443 334444444444322 23555655555554443 2222222222211 22 5
Q ss_pred hHHHHHHHHHHHC
Q 036577 410 EGALSLYSEMLSK 422 (470)
Q Consensus 410 ~~A~~~~~~~~~~ 422 (470)
..|.+++++..+.
T Consensus 526 ~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 526 HLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHhc
Confidence 5666666666544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.31 E-value=12 Score=31.33 Aligned_cols=179 Identities=14% Similarity=0.114 Sum_probs=101.8
Q ss_pred cCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 036577 225 TGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDW 304 (470)
Q Consensus 225 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 304 (470)
.|-+.-|.--|.+..... +.-+.+||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-| ++.-.|++
T Consensus 78 lGL~~LAR~DftQaLai~-------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~ 149 (297)
T COG4785 78 LGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRY 149 (297)
T ss_pred hhHHHHHhhhhhhhhhcC-------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCch
Confidence 444455555555555544 4456788888888899999999999999998874332222222222 23356888
Q ss_pred HHHHHHHHHHHHCCCCCCHh--HHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHH
Q 036577 305 NEAKCLLIEMMDQGVQPNVV--TFNVIMDELCKNGKMDEASRL-LDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELF 381 (470)
Q Consensus 305 ~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (470)
.-|.+-+...-+.+ +.|+. .|--+. .+.-++.+|..- .++.... |..-|...+-.|. .|.+.+ ..++
T Consensus 150 ~LAq~d~~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-LgkiS~-e~l~ 219 (297)
T COG4785 150 KLAQDDLLAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKISE-ETLM 219 (297)
T ss_pred HhhHHHHHHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-HhhccH-HHHH
Confidence 88887777766553 33332 222222 233355555543 3344332 4344433333222 233221 2233
Q ss_pred HHHHHCCCCC-------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 382 VSMESNRCMH-------DVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 382 ~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+++.... .. -..||--+..-+...|+.++|..+|+-.+..
T Consensus 220 ~~~~a~a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 220 ERLKADA-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhhc-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3333211 11 2346677788888899999999999988765
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.04 E-value=1.1 Score=25.92 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 108 SSFNILFGCLAKNKHYDTVLSLFKRLNS 135 (470)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 135 (470)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.96 E-value=1.2 Score=24.29 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.|..+..++...|++++|++.|++.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666666777777777777666643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.93 E-value=0.81 Score=25.06 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 430 IYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555556666666666655554
|
... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.85 E-value=0.57 Score=36.71 Aligned_cols=52 Identities=8% Similarity=0.112 Sum_probs=21.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 036577 114 FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVL 165 (470)
Q Consensus 114 ~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 165 (470)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++...++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3344444444444444444444332333444444444444444444443333
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.66 E-value=9.9 Score=29.64 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=34.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 036577 334 CKNGKMDEASRLLDLMIQIGVR-PNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
...++.+++..++..|.-..++ +...++. ...+...|++++|.++|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 4577788888888877765433 1222333 334566788888888888877654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.46 E-value=13 Score=30.59 Aligned_cols=92 Identities=8% Similarity=0.016 Sum_probs=51.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 036577 365 MDGFCLTGRVNRAKELFVSMESNRCMHD--VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH 442 (470)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (470)
...+..+|++++|..-++.........+ ...--.|.......|.+|+|+..++...+.++. ......-.+++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcC
Confidence 4456667777777777766554310101 111223445566677777777777665543322 222233346677777
Q ss_pred CHHHHHHHHHHHHHcC
Q 036577 443 QVERAFKLFDEMRRDG 458 (470)
Q Consensus 443 ~~~~A~~~~~~m~~~g 458 (470)
+-++|+.-|++..+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 7777777777776654
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=88.44 E-value=30 Score=34.97 Aligned_cols=116 Identities=5% Similarity=-0.051 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHcC-CCCC--HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 036577 337 GKMDEASRLLDLMIQIG-VRPN--AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGAL 413 (470)
Q Consensus 337 g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 413 (470)
.+.+.|..++....... ..+. ..+...+.......+...+|...++...... .+......-+..-...++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 34566666666653332 1111 1122333333333322445555544433221 13333444444445667777766
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 414 SLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 414 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
..+..|-... .-...-..-+..++...|+.++|..+|+++.
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6666664321 1123333345566666777777777776653
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.20 E-value=9.1 Score=33.87 Aligned_cols=106 Identities=19% Similarity=0.151 Sum_probs=59.4
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 036577 207 GCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP 286 (470)
Q Consensus 207 g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 286 (470)
|.+....+...++..-....+++.+..++-++....... ..++ .+-...++.+. .-+.++++.++..-.+.|+-|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~---~~~~-~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAW---YLRN-WTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchh---hhcc-ccHHHHHHHHH-ccChHHHHHHHhCcchhcccc
Confidence 444555555555555555666666666666665432110 0111 11122222222 234556666666666677777
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
|-.+++.+++.+.+.+++.+|..+...|+.+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777777777766666544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.16 E-value=17 Score=31.86 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCChhhh
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMR-----RDGVAADTWTY 466 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~ 466 (470)
+++.....|..+|.+.+|.++-++.+..+ +.+...|..|+..+...|+--.|.+-++++. +.|+..|...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34566678889999999999999988653 3366778888899999999888888888775 45777665544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.07 E-value=5.3 Score=32.79 Aligned_cols=96 Identities=15% Similarity=0.101 Sum_probs=46.9
Q ss_pred ccCCCCccccCChhHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 75 KSSGEGDITTITPNEAFCIFDYMLNMRPSPPP---VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151 (470)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 151 (470)
+.-|...+..|++++|..-|..++..-|..+. ...|..-..++.+.+.++.|+.-..+.++.+ +........-..+
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAea 177 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEA 177 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHH
Confidence 33444455556666666666665555443111 2234444455555566666655555555543 2222233333444
Q ss_pred HHhcCCcchHHHHHHHHHhC
Q 036577 152 FCKMGRVSPGFVVLGRILRS 171 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~ 171 (470)
|.+...+++|+.-|..+...
T Consensus 178 yek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHh
Confidence 55555555555555555543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.98 E-value=22 Score=32.77 Aligned_cols=65 Identities=14% Similarity=0.014 Sum_probs=34.6
Q ss_pred CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 036577 252 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP---NVVTYNSLIHGFCYANDWNEAKCLLIEMMD 316 (470)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (470)
...+|..++..+.+.|.++.|...+..+...+... .......-+...-..|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666666666666666666655532111 222333334445555666666666655554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=87.98 E-value=31 Score=34.47 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=25.1
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 322 NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 322 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
+......++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.++|+...+..+.+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555666667777777776666665544322 12334455555666666655555544444
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.97 E-value=11 Score=29.39 Aligned_cols=50 Identities=22% Similarity=0.402 Sum_probs=20.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNS 135 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 135 (470)
.++++++..+++.+.-..|..+...++...+ +...|++.+|+++|+++..
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhc
Confidence 3444444444444444444433333332222 2334444444444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.73 E-value=16 Score=31.04 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=85.7
Q ss_pred HHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 036577 72 ERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL-YTYNILIN 150 (470)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~li~ 150 (470)
+.++-.|..+.....++.|+..+...+..+|. .+.-|..-+.++.+.++++.+..--.+.++. .|+. .....+..
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~--~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPT--VASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQ 86 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCC--cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHH
Confidence 34455666677777899999999888888876 4566777788888889998887777776665 4443 34555667
Q ss_pred HHHhcCCcchHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036577 151 CFCKMGRVSPGFVVLGRILR----SCFTPDAVTFNSLIKGLCAESRIMEAAALFTK 202 (470)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 202 (470)
+......+++|+..+.+... ..+++-......|..+--..=.+.+..++.++
T Consensus 87 ~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 87 WLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 77788888899888887743 33444455666666554444444455554444
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.21 E-value=5.5 Score=28.30 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036577 271 KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMM 315 (470)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (470)
++.+-++.+...++.|++.+..+.+++|.+.+|+..|.++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555555555666666666666666666666666666666555
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.63 E-value=4.5 Score=33.68 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 036577 111 NILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC--FTPDAVTFNSLIKG 186 (470)
Q Consensus 111 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 186 (470)
+..+..+.+.++.++|+.+.++-.+.. +.|...-..+++.+|-.|++++|..-++-.-+.. ..+-...|..+|++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 444556666777777777777666654 4455566667777777777777766655554421 22334555555544
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.61 E-value=6 Score=28.44 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 271 KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
+..+-++.+...++.|++.+..+.+.+|.+.+|+..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555666666667777777777777777777777777777766554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.35 E-value=26 Score=31.94 Aligned_cols=146 Identities=11% Similarity=-0.008 Sum_probs=99.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 036577 93 IFDYMLNMRPSPPPVSSFNILFGCLAKNKH------------YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 93 ~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (470)
-|+..++.+|. |+.+|-.++..--..-. .+.-+.++++.++.+ +.+...+..++..+.+..+.++
T Consensus 7 el~~~v~~~P~--di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 7 ELNRRVRENPH--DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHhCcc--cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHH
Confidence 35556666665 88899888865443322 355688889888874 5677788888899998888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhc------CC----CCCcch-------HHHHHH
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCA---ESRIMEAAALFTKLKAF------GC----EPNVIT-------YSTLIN 220 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~------g~----~~~~~~-------~~~l~~ 220 (470)
..+.+++++... +-+...|...+..... .-.++....+|.+.... |. .+...+ +..+..
T Consensus 84 l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~ 162 (321)
T PF08424_consen 84 LAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCR 162 (321)
T ss_pred HHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 888999998863 4467788888776654 23466666666654321 11 011111 223334
Q ss_pred HHHhcCChHHHHHHHHHHHhcC
Q 036577 221 GLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
.+.+.|..+.|..+++.+.+-+
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHHH
Confidence 4567899999999999998766
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.26 E-value=72 Score=36.95 Aligned_cols=62 Identities=19% Similarity=0.103 Sum_probs=49.0
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 358 AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
..+|....+...+.|.++.|....-...+.+ -...+--.+..+...|+...|+.++++-++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4677888888888999999988876666654 3345666778889999999999999988864
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.95 E-value=0.32 Score=38.14 Aligned_cols=84 Identities=13% Similarity=0.197 Sum_probs=44.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036577 329 IMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKE 408 (470)
Q Consensus 329 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 408 (470)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++. . +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~---~----~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT---S----NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS---S----SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc---c----cccCHHHHHHHHHhcch
Confidence 3444555556666666666666554444556666666666666555555555541 1 11222345555555666
Q ss_pred hhHHHHHHHHH
Q 036577 409 IEGALSLYSEM 419 (470)
Q Consensus 409 ~~~A~~~~~~~ 419 (470)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.90 E-value=8.2 Score=27.45 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 341 EASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
++.+-++.+...+..|++....+.+++|.+.+++..|.++|+.+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555555666666666666666666666666665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=85.79 E-value=24 Score=31.07 Aligned_cols=113 Identities=11% Similarity=0.089 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcc-C-CHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 036577 269 VDKAKELFLKMKD-ENINPNVVTYNSLIHGFCYA-N-DWNEAKCLLIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASR 344 (470)
Q Consensus 269 ~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~-~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 344 (470)
+.+|+++|+.... ..+--|..+...+++..... + ....-.++.+-+... +..++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4556666653221 12334555555555555441 1 222222333333221 235555666666667777777777666
Q ss_pred HHHHHHHc-CCCCCHhHHHHHHHHHHcCCCHHHHHHHH
Q 036577 345 LLDLMIQI-GVRPNAFVYNTLMDGFCLTGRVNRAKELF 381 (470)
Q Consensus 345 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (470)
+++..... +..-|...|..++......|+..-..++.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 66665554 44556666777777777777755554444
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.68 E-value=7.6 Score=31.37 Aligned_cols=95 Identities=9% Similarity=0.016 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHH---HHHHHHhcCChHHHHHHHHH-------HHhCCCCCC-HHHHHHHHHHHHhc
Q 036577 87 PNEAFCIFDYMLNMRPSPPPVSSFNI---LFGCLAKNKHYDTVLSLFKR-------LNSTGLFPD-LYTYNILINCFCKM 155 (470)
Q Consensus 87 ~~~A~~~f~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~-------m~~~~~~~~-~~~~~~li~~~~~~ 155 (470)
++.|++.++.....+|. +...++. .+.-+++..+..++..++++ .+.. .|+ ..++..+..++...
T Consensus 7 FE~ark~aea~y~~nP~--DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL--DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH--hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHH
Confidence 56788888887777776 6665443 44444444444445455444 4443 343 45666666666554
Q ss_pred CC-----------cchHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 156 GR-----------VSPGFVVLGRILRSCFTPDAVTFNSLIKGL 187 (470)
Q Consensus 156 g~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (470)
+. +++|.+.|++.... .|+..+|+.-+.+.
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 42 33333344444333 45555665555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.44 E-value=7.6 Score=34.74 Aligned_cols=90 Identities=11% Similarity=-0.058 Sum_probs=56.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHH
Q 036577 185 KGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC 264 (470)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (470)
.-|.++|.+++|+..|....... +.|.+++..-..+|.+...+..|..-.......+ ..-+..|..-+.+-.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-------~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-------KLYVKAYSRRMQARE 176 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-------HHHHHHHHHHHHHHH
Confidence 34677788888888887766532 2377777777777887777777777666665544 223344444444444
Q ss_pred hCCCHHHHHHHHHHHHhC
Q 036577 265 KEGFVDKAKELFLKMKDE 282 (470)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~ 282 (470)
..|...+|.+-++..+..
T Consensus 177 ~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHhhHHHHHHhHHHHHhh
Confidence 556666666666665553
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.24 E-value=26 Score=30.88 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 036577 88 NEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLF 130 (470)
Q Consensus 88 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 130 (470)
..|+++|..++...+. .+ +-+.++..+....+..+|...+
T Consensus 150 ~KA~ELFayLv~hkgk--~v-~~~~~ie~lwpe~D~kka~s~l 189 (361)
T COG3947 150 RKALELFAYLVEHKGK--EV-TSWEAIEALWPEKDEKKASSLL 189 (361)
T ss_pred hHHHHHHHHHHHhcCC--cc-cHhHHHHHHccccchhhHHHHH
Confidence 4566666666655443 12 2234455555555555554444
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=85.03 E-value=50 Score=34.02 Aligned_cols=320 Identities=13% Similarity=0.057 Sum_probs=165.7
Q ss_pred HHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHhc----CCcchHHHHHHHHH----hCCCCCCHHHHHHHHHHHHh
Q 036577 125 TVLSLFKRLNSTGLF-------PDLYTYNILINCFCKM----GRVSPGFVVLGRIL----RSCFTPDAVTFNSLIKGLCA 189 (470)
Q Consensus 125 ~A~~~~~~m~~~~~~-------~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~ 189 (470)
....+++++...|+. +.-+-|..+..-+.+. +...+..+++.... ..| -|+. -|.-..+
T Consensus 299 ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g-~~~e-----AI~hAla 372 (894)
T COG2909 299 NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHG-LPSE-----AIDHALA 372 (894)
T ss_pred cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCC-ChHH-----HHHHHHh
Confidence 466777887777643 2344555555444332 22334444444332 233 2222 3344556
Q ss_pred cCCHHHHHHHHHHHHhc---------------CCCCCcchH----HHHHHH--HHhcCChHHHHHHHHHHHhcCCCCCcc
Q 036577 190 ESRIMEAAALFTKLKAF---------------GCEPNVITY----STLING--LCRTGHTIVALNLFEEMANGNGEIGVV 248 (470)
Q Consensus 190 ~g~~~~a~~~~~~~~~~---------------g~~~~~~~~----~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~ 248 (470)
.|+++.|-.++++.... ++| +.... -.+..+ .....++.+|..+..++...-+..+
T Consensus 373 A~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP-~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~-- 449 (894)
T COG2909 373 AGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALP-AELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPM-- 449 (894)
T ss_pred CCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCC-HHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCc--
Confidence 78888887777765110 121 11111 112222 3457889999999988876543211
Q ss_pred cCCCHh---hHHHHH-HHHHhCCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 036577 249 CEPNTV---TYTTII-DGLCKEGFVDKAKELFLKMKDE----NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ 320 (470)
Q Consensus 249 ~~~~~~---~~~~l~-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (470)
..+... .++.+- ......|++++|.++-+..... -..+....+..+..+..-.|++++|..+..+..+..-.
T Consensus 450 ~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 450 HSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred ccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 111111 233332 2233478889999888877654 22345667777888888899999999998777654222
Q ss_pred CCHhH---HHHH--HHHHHHcCCH--HHHHHHHHHHHHcC--CC----CCHhHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Q 036577 321 PNVVT---FNVI--MDELCKNGKM--DEASRLLDLMIQIG--VR----PNAFVYNTLMDGFCLT-GRVNRAKELFVSMES 386 (470)
Q Consensus 321 ~~~~~---~~~l--~~~~~~~g~~--~~a~~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 386 (470)
-+... |..+ ...+...|+. .+....+....... -+ +-..+...++.++.+. +...++..-+.--..
T Consensus 530 ~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~ 609 (894)
T COG2909 530 HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSV 609 (894)
T ss_pred cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhh
Confidence 23332 3333 2245566733 33333333333220 01 1223344455555441 112222222222222
Q ss_pred CCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHHHHCCCC----CCHhHHHHHHH--HHHhcCCHHHHHHHHHH
Q 036577 387 NRCMHDVFS--YSILINGYCKNKEIEGALSLYSEMLSKGIK----PDVVIYNTLFI--GLFEIHQVERAFKLFDE 453 (470)
Q Consensus 387 ~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~--~~~~~g~~~~A~~~~~~ 453 (470)
....|-... +..|+.+....|+.++|...++++...... ++...-...+. ....+|+.+++.....+
T Consensus 610 ~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 610 YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 222222222 236788888999999999999988764322 22222222222 23457888888777655
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.84 E-value=3.1 Score=22.62 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777778888888888888877764
|
... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.66 E-value=9.4 Score=31.90 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC--CCCCCHHHHH
Q 036577 215 YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE--NINPNVVTYN 292 (470)
Q Consensus 215 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~ 292 (470)
.+.-++.+.+.+...+++...+.-.+.. +.|..+-..++..+|-.|++++|..-++-.-.. ...+....|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr 76 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYR 76 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-------CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 3444566667777777777777766655 556666777777777788888777766655443 2223445555
Q ss_pred HHHHH
Q 036577 293 SLIHG 297 (470)
Q Consensus 293 ~li~~ 297 (470)
.+|.+
T Consensus 77 ~lir~ 81 (273)
T COG4455 77 HLIRC 81 (273)
T ss_pred HHHHH
Confidence 55543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.63 E-value=33 Score=31.58 Aligned_cols=67 Identities=15% Similarity=0.073 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036577 286 PNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQP---NVVTFNVIMDELCKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 286 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 352 (470)
....+|..++..+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|+..++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345677888888888888888888888887643211 2334444456666778888888888887773
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.57 E-value=1.7 Score=23.35 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=11.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 036577 434 LFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 434 l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+..++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444555555555555443
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=84.24 E-value=14 Score=28.22 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=27.7
Q ss_pred CHhHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 357 NAFVYNTLMDGFCLTGR---VNRAKELFVSMESNRCMH--DVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 357 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+..+--.+..++.+..+ ..+.+.+++.+.+.. .| .....--|.-++.+.|++++++++.+.+++
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33333344444444332 334445555554411 11 222222333445555555555555555554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.09 E-value=1.7 Score=23.36 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=16.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 398 ILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 398 ~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.+..++.+.|++++|.+.|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555666677777777777776654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.28 E-value=10 Score=30.72 Aligned_cols=78 Identities=12% Similarity=0.131 Sum_probs=54.3
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036577 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNK-----------HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 154 (470)
-+++|+.-|+.++..+|. ...++..+..++...+ .|++|.+.|++.... .|+..+|..-+...
T Consensus 50 miedAisK~eeAL~I~P~--~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~-- 123 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPN--KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA-- 123 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH--
Confidence 368899999999999987 5666666666665543 256666677766665 79999999888876
Q ss_pred cCCcchHHHHHHHHHhCCC
Q 036577 155 MGRVSPGFVVLGRILRSCF 173 (470)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~ 173 (470)
.+|-+++.++.+.+.
T Consensus 124 ----~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 ----AKAPELHMEIHKQGL 138 (186)
T ss_dssp ----HTHHHHHHHHHHSSS
T ss_pred ----HhhHHHHHHHHHHHh
Confidence 357788888877653
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.02 E-value=34 Score=30.47 Aligned_cols=217 Identities=15% Similarity=0.101 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc----chHHHHHHHHHhCCCCCCHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV----SPGFVVLGRILRSCFTPDAVTFN 181 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~~ 181 (470)
+.......+..+...|. +++...+..+.. .+|...-...+.++.+.|+. +++...+..+... .++..+-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 55555556666666664 334444444443 34556666666677777653 3455555555332 34555554
Q ss_pred HHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhH
Q 036577 182 SLIKGLCAESR-----IMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTY 256 (470)
Q Consensus 182 ~l~~~~~~~g~-----~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (470)
..+.++...+. ...+...+..... .++..+-...+.++.+.++ +++...+-.+... ++..+-
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---------~~~~VR 176 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---------PNGDVR 176 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---------CCHHHH
Confidence 45555444332 1122333322222 1344444445555555554 3444555554432 233344
Q ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH
Q 036577 257 TTIIDGLCKEG-FVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK 335 (470)
Q Consensus 257 ~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 335 (470)
...+.++.+.+ +...+...+..+.. .++..+....+.++.+.++ ..+...+-+..+.+ + .....+.++..
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ 247 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGE 247 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHh
Confidence 44444444432 13344444444443 2355555556666666665 34444444444432 1 12344555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 036577 336 NGKMDEASRLLDLMIQ 351 (470)
Q Consensus 336 ~g~~~~a~~~~~~~~~ 351 (470)
.|.. +|...+..+.+
T Consensus 248 ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 248 LGDK-TLLPVLDTLLY 262 (280)
T ss_pred cCCH-hHHHHHHHHHh
Confidence 5553 45555555554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.90 E-value=25 Score=28.94 Aligned_cols=116 Identities=9% Similarity=0.049 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHH--HHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHcCCCHHHHHHHH
Q 036577 306 EAKCLLIEMMDQGVQPNVVTFNV--IMDELCKNGKMDEASRLLDLMIQIGVRPN--AFVYNTLMDGFCLTGRVNRAKELF 381 (470)
Q Consensus 306 ~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 381 (470)
+.....+++...........+.. +...+...+++++|..-++.........+ ..+--.|.+.....|.+++|...+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44445555554421222222332 34467788899999988888775421111 112234556677889999999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 036577 382 VSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKG 423 (470)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (470)
+.....+. .......-.+.+...|+-++|..-|++.++.+
T Consensus 150 ~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 87766431 22334455677888999999999999888765
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=82.84 E-value=62 Score=33.39 Aligned_cols=199 Identities=15% Similarity=0.112 Sum_probs=113.5
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHH-HHHccCCHHHHHHHHHHHHHC----CCCCCHhHHHHHH
Q 036577 263 LCKEGFVDKAKELFLKMKDENINPNV-------VTYNSLIH-GFCYANDWNEAKCLLIEMMDQ----GVQPNVVTFNVIM 330 (470)
Q Consensus 263 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 330 (470)
.....++++|..++.++...-..|+. ..++.+-. .....|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34568899999998887654222221 12333322 234578899999988877654 2234456677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHhHH---HHH--HHHHHcCCCH--HHHHHHHHHHHHC---CC---CCCHHHHH
Q 036577 331 DELCKNGKMDEASRLLDLMIQIGVRPNAFVY---NTL--MDGFCLTGRV--NRAKELFVSMESN---RC---MHDVFSYS 397 (470)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~g~~--~~A~~~~~~~~~~---~~---~~~~~~~~ 397 (470)
.+..-.|++++|..+..+..+..-+-+...+ ..+ ...+..+|.. .+.+..|...... .. .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888899999999998877665333333333 222 2335566733 3333334333221 10 12234455
Q ss_pred HHHHHHHH-cCChhHHHHHHHHHHHCCCCCCHhHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 036577 398 ILINGYCK-NKEIEGALSLYSEMLSKGIKPDVVIY--NTLFIGLFEIHQVERAFKLFDEMRRDGVAA 461 (470)
Q Consensus 398 ~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 461 (470)
.+..++.+ .+...++..-++-.......|-..-. ..|+......|+.++|...+.++......+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 56666655 22233333333333333222222222 356788888999999999999998654444
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.80 E-value=31 Score=29.94 Aligned_cols=188 Identities=13% Similarity=0.116 Sum_probs=118.2
Q ss_pred ccCChhHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhc
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPP--PVSSFNILFGCLAKNKHYDTVLSLFKRLNST---GL--FPDLYTYNILINCFCKM 155 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~--~~~~~~~~~li~~~~~~ 155 (470)
....+++|+.-|..+++..+... .-.+...++....+.+++++....|.+|+.. .+ .-+..+.+.++.--+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 44589999999999999887622 2445677899999999999999999887542 11 12344667777666655
Q ss_pred CCcchHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----C-------cchHHHHH
Q 036577 156 GRVSPGFVVLGRILRSC-FTPD----AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEP----N-------VITYSTLI 219 (470)
Q Consensus 156 g~~~~a~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~----~-------~~~~~~l~ 219 (470)
.+.+--.++++.-+..- -..+ -.+-.-|...|...|++....++++++...-... | ...|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 56555555554433210 0001 1123457778888888888888888886431111 1 23466667
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHH-----HHHhCCCHHHHHHHH
Q 036577 220 NGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIID-----GLCKEGFVDKAKELF 276 (470)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~a~~~~ 276 (470)
..|....+-.+...+|++....... -|.+.... .|+ ...+.|++++|..-|
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSA-----IPHPlImG-vIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSA-----IPHPLIMG-VIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhcc-----CCchHHHh-HHHHcCCccccccchHHHHHhHH
Confidence 7777777777788888887765532 34433332 233 334567888775444
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=82.71 E-value=4.9 Score=27.32 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=31.0
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHH
Q 036577 405 KNKEIEGALSLYSEMLSKGIKPDV--VIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
...+.++|+..|+..+++-..+.. .++..|+.+++..|++.+++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888777765333221 25566777788888887776654
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.45 E-value=35 Score=30.33 Aligned_cols=136 Identities=18% Similarity=0.138 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG-KMDEASRLLDLMIQIGVRPNAFVYNTLM 365 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 365 (470)
+..+-...+.++.+.++ +++...+..+.+. ++...-...+.++.+.+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 55555566666666665 3455555555542 33334444444444432 23355555555553 33556666667
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036577 366 DGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGL 438 (470)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (470)
.++.+.|+ ..|...+-...+.+ + .....+.++...|.. +|+..+..+.+. .||..+-...+.+|
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 77777776 34555554444432 2 233566777777774 577777777653 34555554444444
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.25 E-value=3.7 Score=24.39 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=11.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 036577 399 LINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+..+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34444445555555555544443
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=81.98 E-value=3.1 Score=24.70 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036577 433 TLFIGLFEIHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 433 ~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (470)
.|..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47789999999999999999999654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.53 E-value=1.1e+02 Score=35.53 Aligned_cols=314 Identities=11% Similarity=0.021 Sum_probs=161.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 112 ILFGCLAKNKHYDTVLSLFKRL----NSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGL 187 (470)
Q Consensus 112 ~l~~~~~~~~~~~~A~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (470)
.+..+-.+.+.+.+|+..++.- .+. .-....+..+...|...+++|...-+...-.. .|+ .+ .-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHH
Confidence 4455556778888888888873 221 11223444455588888888887776664211 222 22 234455
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHH-HHHHHhC
Q 036577 188 CAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTI-IDGLCKE 266 (470)
Q Consensus 188 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~ 266 (470)
...|++..|...|+++...+ ++....++.++......|.+...+-..+-..... .+....++.+ +.+--+.
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-------se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-------SEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-------CHHHHHHHHHHHHHHhhh
Confidence 66889999999999988764 2336677777777777788877777665554433 2333333332 3444677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHcc--CCHHHHHHHHHHHHHCCCCC---------CHhHHHHHHHHH
Q 036577 267 GFVDKAKELFLKMKDENINPNVVTYNSL--IHGFCYA--NDWNEAKCLLIEMMDQGVQP---------NVVTFNVIMDEL 333 (470)
Q Consensus 267 g~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~--~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~ 333 (470)
++++....... .. +..+|... .....+. .|.-.-.+..+.+.+.-+.| =...|..++...
T Consensus 1532 ~qwD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH 1604 (2382)
T KOG0890|consen 1532 SQWDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLH 1604 (2382)
T ss_pred cchhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHH
Confidence 77777666654 11 22233322 2222221 22111112222222211110 012233333322
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC------HhHHHHHHHHHHcCCCHHHHHHHHHH-HHHC----CC-CCCHHHHHHHHH
Q 036577 334 CKNGKMDEASRLLDLMIQIGVRPN------AFVYNTLMDGFCLTGRVNRAKELFVS-MESN----RC-MHDVFSYSILIN 401 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~----~~-~~~~~~~~~l~~ 401 (470)
.-.. -....+... +..++ ..-|-.-+..-....+..+-+--+++ +... +. ..-..+|-...+
T Consensus 1605 ~l~e----l~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAr 1678 (2382)
T KOG0890|consen 1605 LLLE----LENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSAR 1678 (2382)
T ss_pred HHHH----HHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHH
Confidence 2111 001111111 11111 11121111111111111111111111 1111 11 224667888888
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 402 GYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
..-.+|+++.|...+-...+.+ . +..+.....-+...|+...|+.++++..+.
T Consensus 1679 iaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1679 IARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 8888999999998877766654 2 334556667788999999999999998854
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.71 E-value=2.8 Score=21.38 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=8.8
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 036577 434 LFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 434 l~~~~~~~g~~~~A~~~~ 451 (470)
+..++...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 444444555555555444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 89.9 bits (221), Expect = 4e-19
Identities = 20/204 (9%), Positives = 64/204 (31%), Gaps = 4/204 (1%)
Query: 190 ESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVC 249
+ + A + T +A +L + +
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL-- 162
Query: 250 EPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEA-K 308
Y ++ G ++G + + +KD + P++++Y + + + +
Sbjct: 163 -LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
Query: 309 CLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 368
L +M +G++ + V++ E + + ++ P + L+
Sbjct: 222 RCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281
Query: 369 CLTGRVNRAKELFVSMESNRCMHD 392
+L + +++ +C+ +
Sbjct: 282 YAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 84.9 bits (208), Expect = 1e-17
Identities = 22/203 (10%), Positives = 52/203 (25%), Gaps = 4/203 (1%)
Query: 272 AKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMD 331
A L + +P L+ + + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 332 ELCKNGKMDEASRLLDL---MIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR 388
++ A LL + Q +YN +M G+ G + ++
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 389 CMHDVFSYSILINGYCKNKEIEGALSLY-SEMLSKGIKPDVVIYNTLFIGLFEIHQVERA 447
D+ SY+ + + + G + +M +G+K + L ++
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 448 FKLFDEMRRDGVAADTWTYRTFI 470
K+ +
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLL 278
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 83.7 bits (205), Expect = 3e-17
Identities = 22/170 (12%), Positives = 50/170 (29%), Gaps = 4/170 (2%)
Query: 305 NEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTL 364
A CL P ++ E +D Q +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 365 MDGFCLTGRVNRAKELFV---SMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLS 421
LT ++ A L V R + + Y+ ++ G+ + + + + +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 422 KGIKPDVVIYNTLFIGLFEIHQVERAF-KLFDEMRRDGVAADTWTYRTFI 470
G+ PD++ Y + Q + ++M ++G+ +
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 79.9 bits (195), Expect = 6e-16
Identities = 29/293 (9%), Positives = 76/293 (25%), Gaps = 23/293 (7%)
Query: 30 HTGKPTSSILENEPSYPNTTAKLKESL------------RLTVKDRASLEKFLRERFKSS 77
H + + + P + + L RL K + + +
Sbjct: 4 HHHHHRKVQMGAKDATPVPCGRWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRR 63
Query: 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG 137
+ + ++ A C+ D SP L D + + +
Sbjct: 64 LQVEPRLLSKQMAGCLEDCTRQAPESPWE-EQLARLLQEAPGKLSLDVEQAPSGQHSQAQ 122
Query: 138 LFPDLYTYNILINCFCKMGRVSPGFVVL---GRILRSCFTPDAVTFNSLIKGLCAESRIM 194
L C ++ +L + +N+++ G +
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 195 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTI-VALNLFEEMANGNGEIGVVCEPNT 253
E + +K G P++++Y+ + + R E+M+ +
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG------LKLQA 236
Query: 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNE 306
+ ++ + + ++ P V + L+ +
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 2e-13
Identities = 76/552 (13%), Positives = 151/552 (27%), Gaps = 189/552 (34%)
Query: 58 LTVKDRASLEKFLRERFKSSGEGDITTITPNE---AFCIFDYMLNMRPSPPPVSSFNILF 114
KD ++ + E D ++ + +F +L+ + V F +
Sbjct: 33 FDCKD---VQDMPKSILSKE-EIDHIIMSKDAVSGTLRLFWTLLSKQEEM--VQKF--VE 84
Query: 115 GCLAKNKHYDTVLSLFK-RLNSTGLFPDLYT---------------YNI--------LIN 150
L N Y ++S K + +Y YN+ L
Sbjct: 85 EVLRIN--YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 151 CFCKMGRVSPGFVVLG-----------RILRS----CFTPDAVTFNSLIKGLCAESRIME 195
++ R + ++ G + S C + + +L E+ +
Sbjct: 143 ALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 196 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVAL-----NLFEEMANGNGEIGV--- 247
L ++ +PN +++ + I ++ L + N + V
Sbjct: 202 LQKLLYQI-----DPN---WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLN 252
Query: 248 VCEPNTVTY---------TT----IIDGL------------CKEGFV-DKAKELFLK--- 278
V TT + D L D+ K L LK
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 279 MKDE-------NINPNVVTYNSLI-----HGFCYANDWNEAKCL-LIEMMDQGV---QPN 322
+ + NP + S+I G ++W C L +++ + +P
Sbjct: 313 CRPQDLPREVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 323 VV--TFN--VIMDE--------LC---KNGKMDEASRLLDLMIQIGV---RPNAFVYNTL 364
F+ + L + + +++ + + + +P ++
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SI 428
Query: 365 MDGFCLTGRVNRAKELFVSMESNRCMHDVF--SYSILINGYCKNKEIEGALSLYSEMLSK 422
+ EL V +E+ +H Y+I + + I L Y
Sbjct: 429 PSIYL---------ELKVKLENEYALHRSIVDHYNIP-KTFDSDDLIPPYLDQY------ 472
Query: 423 GIKPDVVIYNTLFIG--LFEIHQVERAFKLFDEM-----------RRDGVA--------- 460
Y+ IG L I ER LF + R D A
Sbjct: 473 -------FYS--HIGHHLKNIEHPER-MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 461 --ADTWTYRTFI 470
Y+ +I
Sbjct: 523 TLQQLKFYKPYI 534
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.74 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.71 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.71 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.7 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.69 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.69 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.69 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.68 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.68 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.68 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.67 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.67 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.67 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.67 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.64 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.64 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.63 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.62 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.61 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.61 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.61 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.6 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.6 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.6 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.56 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.55 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.55 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.55 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.53 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.53 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.51 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.49 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.49 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.47 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.46 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.43 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.42 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.39 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.38 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.34 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.32 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.29 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.26 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.24 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.21 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.21 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.21 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.21 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.2 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.18 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.18 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.18 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.17 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.16 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.14 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.13 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.13 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.13 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.13 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.11 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.1 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.08 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.06 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.05 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.05 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.05 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.05 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.03 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.02 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.01 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.97 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.96 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.94 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.93 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.93 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.91 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.88 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.87 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.87 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.85 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.85 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.8 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.8 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.8 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.79 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.79 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.79 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.78 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.78 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.77 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.77 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.77 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.76 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.75 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.74 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.74 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.73 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.73 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.73 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.72 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.71 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.71 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.71 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.7 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.69 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.66 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.6 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.6 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.59 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.59 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.57 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.56 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.55 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.55 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.53 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.52 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.52 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.51 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.51 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.5 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.47 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.47 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.46 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.46 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.43 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.4 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.39 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.39 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.39 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.39 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.38 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.36 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.29 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.28 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.27 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.27 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.26 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.26 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.24 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.23 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.23 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.18 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.17 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.15 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.14 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.13 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.12 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.11 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.09 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.08 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.07 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.06 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.04 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.03 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.91 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.89 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.87 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.84 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.84 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.78 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.75 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.72 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.57 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.51 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.35 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.29 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.21 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.19 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.16 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.06 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.93 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.92 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.9 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.9 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.81 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.72 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.67 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.62 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.45 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.36 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.22 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.08 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.07 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.94 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.88 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.84 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.63 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.39 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.69 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.66 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.57 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.5 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.34 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.29 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.91 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.69 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.66 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.64 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.7 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.67 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.26 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.57 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 90.67 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.74 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.57 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.2 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.97 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.72 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.02 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 86.35 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.23 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.19 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.92 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.66 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.14 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.76 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.39 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 80.98 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.85 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=285.90 Aligned_cols=369 Identities=11% Similarity=0.004 Sum_probs=197.9
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 036577 79 EGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (470)
Q Consensus 79 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 158 (470)
..+...|++++|+.+|+.+....| +..++..++.+|.+.|++++|+.+|+++... +++..+++.++.+|.+.|++
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLDITG---NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDW 166 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHccCchHHHHHHHHHHhhCC---CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhH
Confidence 344555667777777777765443 3456666666666777777777766666432 45666666666666666666
Q ss_pred chHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------
Q 036577 159 SPGFVVLGRILRS---------------CFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGC--------------- 208 (470)
Q Consensus 159 ~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~--------------- 208 (470)
++|.++|+++... +.+.+..+|+.++.+|.+.|++++|+++|+++.+.+.
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 246 (597)
T 2xpi_A 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLL 246 (597)
T ss_dssp HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcc
Confidence 6666666632211 1123456666666666666666666666666543321
Q ss_pred -------------------------------------------------------CCCcchHHHHHHHHHhcCChHHHHH
Q 036577 209 -------------------------------------------------------EPNVITYSTLINGLCRTGHTIVALN 233 (470)
Q Consensus 209 -------------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~ 233 (470)
+++..+|+.++.+|.+.|++++|++
T Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 326 (597)
T 2xpi_A 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326 (597)
T ss_dssp CHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHH
Confidence 1445556666666667777777777
Q ss_pred HHHHHHhcCCCCCc---------------------------ccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 036577 234 LFEEMANGNGEIGV---------------------------VCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP 286 (470)
Q Consensus 234 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 286 (470)
+|+++...++.... ..+.+..++..++.+|.+.|++++|.++|+++.+.. +.
T Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 405 (597)
T 2xpi_A 327 ITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQ 405 (597)
T ss_dssp HHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC
Confidence 77766654411000 012334445555555555555555555555544421 12
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 366 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (470)
+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.... +..+|+.++.
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 483 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGV 483 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 34455555555555555555555555554443 334445555555555555555555555555544322 4455555555
Q ss_pred HHHcCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 036577 367 GFCLTGRVNRAKELFVSMESN----RCMHD--VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE 440 (470)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 440 (470)
.|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 555555555555555555443 22333 4455555555555555555555555555432 1244455555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 036577 441 IHQVERAFKLFDEMRR 456 (470)
Q Consensus 441 ~g~~~~A~~~~~~m~~ 456 (470)
.|++++|.++|+++.+
T Consensus 563 ~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 563 KKIPGLAITHLHESLA 578 (597)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 5555555555555554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=282.78 Aligned_cols=347 Identities=12% Similarity=0.022 Sum_probs=276.8
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---------------CCCCCH
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST---------------GLFPDL 142 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---------------~~~~~~ 142 (470)
+..+...|++++|+.+|+.+... ++++.+++.++.+|.+.|++++|+++|+++... +.+++.
T Consensus 124 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (597)
T 2xpi_A 124 AQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA 200 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhH
Confidence 34455677888888888877543 146777777777777777777777777743211 123346
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhCCC-------------------------------------------------
Q 036577 143 YTYNILINCFCKMGRVSPGFVVLGRILRSCF------------------------------------------------- 173 (470)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------------------------------------------------- 173 (470)
.+|..++.+|.+.|++++|.++|+++.+.+.
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN 280 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHH
Confidence 6777777777777777777777777654321
Q ss_pred ---------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------------------
Q 036577 174 ---------------------TPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGC------------------------ 208 (470)
Q Consensus 174 ---------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~------------------------ 208 (470)
+++..+|+.++.+|.+.|++++|.++|+++.+.+.
T Consensus 281 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 281 KTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp TTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHH
Confidence 25666777777888888888888888877765431
Q ss_pred ---------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 036577 209 ---------EPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKM 279 (470)
Q Consensus 209 ---------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 279 (470)
+.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 361 ISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-------PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2345677778888888888888888888887765 567889999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC
Q 036577 280 KDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI----GVR 355 (470)
Q Consensus 280 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~ 355 (470)
...+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..
T Consensus 434 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 434 ARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 8864 4578899999999999999999999999999875 567899999999999999999999999999887 667
Q ss_pred CC--HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 036577 356 PN--AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNT 433 (470)
Q Consensus 356 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 433 (470)
|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.+.|+++.+.... +...+..
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~ 589 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDL 589 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHH
Confidence 77 7899999999999999999999999998875 558999999999999999999999999999976322 4556666
Q ss_pred HHHHH
Q 036577 434 LFIGL 438 (470)
Q Consensus 434 l~~~~ 438 (470)
+..+|
T Consensus 590 l~~~~ 594 (597)
T 2xpi_A 590 LKRAL 594 (597)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 65544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=242.96 Aligned_cols=364 Identities=15% Similarity=0.051 Sum_probs=324.4
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (470)
+...|++++|++.|+.+.+..|. +...+..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 34578999999999999998887 78889999999999999999999999988865 6788999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
|.+.|+++++.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++..
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999864 4567789999999999999999999999998864 23455677888899999999999999999998
Q ss_pred cCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 036577 241 GNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ 320 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (470)
.. +.+..+|..+...+.+.|++++|...|+++...+ +.+...+..+...+...|++++|...+++..+.. +
T Consensus 164 ~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 234 (388)
T 1w3b_A 164 TQ-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred hC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 76 5678899999999999999999999999998864 3467889999999999999999999999998874 4
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036577 321 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILI 400 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (470)
.+..++..+..++.+.|++++|...++++.+.++. +..+|..++.++.+.|++++|...|+++.+.. +.+..+|..++
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 56788999999999999999999999999998644 67889999999999999999999999998864 56899999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 036577 401 NGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADT 463 (470)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 463 (470)
..+...|++++|.+.++++.+.. +.+..++..+..++.+.|++++|.+.++++.+ +.|+.
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~ 372 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTF 372 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCC
Confidence 99999999999999999998752 33577899999999999999999999999997 56653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=255.72 Aligned_cols=212 Identities=16% Similarity=0.167 Sum_probs=163.4
Q ss_pred CChHHHHHHHHHHHhcCCCCCcccCC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-
Q 036577 226 GHTIVALNLFEEMANGNGEIGVVCEP-NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAND- 303 (470)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~- 303 (470)
|+...+.+.+.+...... ... ....++.+|++|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+.
T Consensus 3 G~~~s~~e~L~~~~~~k~-----~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~ 77 (501)
T 4g26_A 3 GHMASPSENLSRKAKKKA-----IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAA 77 (501)
T ss_dssp --------------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCC
T ss_pred ccccchHHHHHHHHHHhc-----ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCch
Confidence 444455555555444432 122 2345777888888888888888888888888888888888888888876654
Q ss_pred --------HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHH
Q 036577 304 --------WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVN 375 (470)
Q Consensus 304 --------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 375 (470)
.+.|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 78 ~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~ 157 (501)
T 4g26_A 78 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157 (501)
T ss_dssp SSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHH
Confidence 678888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 036577 376 RAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH 442 (470)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (470)
+|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..+
T Consensus 158 ~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 158 KAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 8888888888888888888888888888888888888888888888888888888888888877643
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=253.07 Aligned_cols=201 Identities=16% Similarity=0.174 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC---------H
Q 036577 270 DKAKELFLKMKDENINPNV-VTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK---------M 339 (470)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 339 (470)
..+..+.+.+.+++..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455566777777665443 46888999999999999999999999999999999999999999987665 6
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 340 DEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhhhccC
Q 036577 420 LSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTYRTFI 470 (470)
Q Consensus 420 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 470 (470)
.+.|+.||..||+.|+.+|++.|+.++|.+++++|.+.|+.|+..||+.++
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~ 217 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIE 217 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-27 Score=223.15 Aligned_cols=345 Identities=14% Similarity=0.077 Sum_probs=305.4
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (470)
+...|++++|...++.+++..|. +..+|..+..++.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHH
Confidence 34567999999999999998876 89999999999999999999999999998864 5567789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
|.+.++++++.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|+..|+++..
T Consensus 120 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 120 AVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999874 4456788889999999999999999999998763 34578899999999999999999999999998
Q ss_pred cCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 036577 241 GNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ 320 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (470)
.+ +.+...+..+...+...|++++|...+++..... +.+..++..+..+|.+.|++++|...|+++.+.. +
T Consensus 198 ~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 268 (388)
T 1w3b_A 198 LD-------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-P 268 (388)
T ss_dssp HC-------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-S
T ss_pred cC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C
Confidence 76 5678899999999999999999999999988763 3368899999999999999999999999999875 5
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036577 321 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILI 400 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (470)
.+..+|..+..++.+.|++++|...++++.+..+ .+..++..++..+...|++++|...++++.+.. +.+..++..++
T Consensus 269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 346 (388)
T 1w3b_A 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLA 346 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 5678899999999999999999999999998854 478899999999999999999999999998764 55788999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCC
Q 036577 401 NGYCKNKEIEGALSLYSEMLSKGIKP-DVVIYNTLFIGLFEIHQ 443 (470)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 443 (470)
.+|.+.|++++|...|+++++. .| +...|..+...+...|+
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999975 44 45677777777766553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-25 Score=211.94 Aligned_cols=353 Identities=13% Similarity=0.068 Sum_probs=284.2
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 036577 89 EAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 168 (470)
Q Consensus 89 ~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 168 (470)
.+...|..+....|. ++..|..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++
T Consensus 10 ~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 10 GVDLGTENLYFQSMA--DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp -------------CH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344555556665554 78899999999999999999999999998764 667889999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-c---chHHHH------------HHHHHhcCChHHHH
Q 036577 169 LRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPN-V---ITYSTL------------INGLCRTGHTIVAL 232 (470)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~---~~~~~l------------~~~~~~~g~~~~a~ 232 (470)
++.+ +.+..++..++.+|.+.|++++|.+.|+++.+.. |+ . ..+..+ ...+...|++++|+
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9875 5568899999999999999999999999998753 43 3 455555 44488999999999
Q ss_pred HHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 036577 233 NLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLI 312 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (470)
..|+++.... +.+..++..++.+|.+.|++++|.+.|+++.... +.+..++..+..+|...|++++|...|+
T Consensus 164 ~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 164 AFLDKILEVC-------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhC-------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999876 6688899999999999999999999999998753 4578999999999999999999999999
Q ss_pred HHHHCCCCCCHhHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHcCCCHHH
Q 036577 313 EMMDQGVQPNVVTFNVI------------MDELCKNGKMDEASRLLDLMIQIGVRPN----AFVYNTLMDGFCLTGRVNR 376 (470)
Q Consensus 313 ~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 376 (470)
++.+.. +.+...+..+ ...+...|++++|...++.+.+..+. + ...+..++.++.+.|++++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHH
Confidence 998764 3445555544 78899999999999999999987433 3 4478889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHH------------HHhcC-
Q 036577 377 AKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD-VVIYNTLFIG------------LFEIH- 442 (470)
Q Consensus 377 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~------------~~~~g- 442 (470)
|...++++.+.. +.+...|..++.+|...|++++|...++++++. .|+ ...+..+..+ |...|
T Consensus 314 A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 314 AIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 999999988764 447899999999999999999999999999975 444 4566665533 33334
Q ss_pred ----CHHHHHHHHHHH-HHcCCCCC
Q 036577 443 ----QVERAFKLFDEM-RRDGVAAD 462 (470)
Q Consensus 443 ----~~~~A~~~~~~m-~~~g~~p~ 462 (470)
+.+++.+.++++ .+ ..||
T Consensus 391 ~~~~~~~~~~~~y~~~~l~--~~pd 413 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQ--WHPD 413 (450)
T ss_dssp STTCCTTHHHHHHHHHHHH--SCGG
T ss_pred CccCCHHHHHHHHHHHHHH--hCCC
Confidence 567778888764 33 4554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=218.90 Aligned_cols=374 Identities=10% Similarity=-0.006 Sum_probs=313.5
Q ss_pred HHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 72 ERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151 (470)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 151 (470)
+.+...|..+...|++++|+..|+.++...| +..+|..++.++.+.|++++|+..++++.+.+ +.+..++..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3344455666778999999999999999874 68899999999999999999999999999875 6678899999999
Q ss_pred HHhcCCcchHHHHHHHHHhCCCC---------------------------------------------------------
Q 036577 152 FCKMGRVSPGFVVLGRILRSCFT--------------------------------------------------------- 174 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~--------------------------------------------------------- 174 (470)
+...|++++|...|+++.+.+..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999999876421
Q ss_pred ---------------------CCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----cCC--------CCCcchHHH
Q 036577 175 ---------------------PDAVTFNSLIKGLCA---ESRIMEAAALFTKLKA-----FGC--------EPNVITYST 217 (470)
Q Consensus 175 ---------------------~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~g~--------~~~~~~~~~ 217 (470)
.+...+......+.. .|++++|...|+++.+ ... +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 013334444444444 8999999999999987 311 223567888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 218 LINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHG 297 (470)
Q Consensus 218 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 297 (470)
+...+...|++++|...++++.... |+...+..+..++...|++++|.+.++.+.... +.+...+..+...
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--------PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHH
Confidence 8999999999999999999998875 238889999999999999999999999998864 3467789999999
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHH
Q 036577 298 FCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 377 (470)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 377 (470)
|...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.... +...+..++..+...|++++|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999875 446678889999999999999999999999987543 678889999999999999999
Q ss_pred HHHHHHHHHCCCC-CC----HHHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 036577 378 KELFVSMESNRCM-HD----VFSYSILINGYCK---NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFK 449 (470)
Q Consensus 378 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 449 (470)
...++++.+.... ++ ...|..+..++.. .|++++|...++++.+.. +.+..++..+...+...|++++|.+
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999998764211 11 4489999999999 999999999999998764 2357788899999999999999999
Q ss_pred HHHHHHHcCCCCCh
Q 036577 450 LFDEMRRDGVAADT 463 (470)
Q Consensus 450 ~~~~m~~~g~~p~~ 463 (470)
.++++.+ +.|+.
T Consensus 471 ~~~~a~~--~~~~~ 482 (514)
T 2gw1_A 471 LFEESAD--LARTM 482 (514)
T ss_dssp HHHHHHH--HCSSH
T ss_pred HHHHHHH--hcccc
Confidence 9999998 45553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-24 Score=207.42 Aligned_cols=351 Identities=11% Similarity=0.064 Sum_probs=286.7
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 157 (470)
+..+...|++++|+.+|+.+++..|. +..+|..++.++...|++++|+..|+++.+.+ +.+..++..+..+|...|+
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence 34455678999999999999998876 89999999999999999999999999999875 6678899999999999999
Q ss_pred cchHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 036577 158 VSPGFVVLGRILRSCFTPDA---VTFNSL------------IKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGL 222 (470)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 222 (470)
+++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|+..|+++.+.. +.+...+..+..+|
T Consensus 110 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 187 (450)
T 2y4t_A 110 LDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECF 187 (450)
T ss_dssp HHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 999999999999864 3334 555555 445889999999999999998764 44678899999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------
Q 036577 223 CRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSL-------- 294 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------- 294 (470)
.+.|++++|++.|+++.... +.+..++..++.++...|++++|...|+++.... +.+...+..+
T Consensus 188 ~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 188 IKEGEPRKAISDLKAASKLK-------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHTTCGGGGHHHHHHHHHHH-------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHH
Confidence 99999999999999998875 6678999999999999999999999999998753 2344555544
Q ss_pred ----HHHHHccCCHHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 036577 295 ----IHGFCYANDWNEAKCLLIEMMDQGVQPN-----VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLM 365 (470)
Q Consensus 295 ----i~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 365 (470)
...+.+.|++++|...|+++.+.. |+ ...+..+..++.+.|++++|...++.+.+..+. +...|..++
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~ 336 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 788999999999999999998863 43 447888899999999999999999999987533 789999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHHcC-----ChhHHHHHHHH-HHHCCCCCC
Q 036577 366 DGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILING------------YCKNK-----EIEGALSLYSE-MLSKGIKPD 427 (470)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~~~p~ 427 (470)
.+|...|++++|...++++.+.. +-+...+..+..+ |...| +.+++.+.+++ .++. .||
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd 413 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW--HPD 413 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGG
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh--CCC
Confidence 99999999999999999998864 3367777777633 33344 56777888886 3432 333
Q ss_pred -----------HhHHHHHHHHHHhcCCHHHH
Q 036577 428 -----------VVIYNTLFIGLFEIHQVERA 447 (470)
Q Consensus 428 -----------~~~~~~l~~~~~~~g~~~~A 447 (470)
...+..+..+|...|+.+++
T Consensus 414 ~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 414 NFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp GCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 12555566666666655443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-24 Score=206.58 Aligned_cols=370 Identities=13% Similarity=0.087 Sum_probs=299.8
Q ss_pred HHHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 036577 70 LRERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li 149 (470)
....+...|..+...|++++|+..|+.+++..|. ++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN--EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 3455566677778889999999999999999886 89999999999999999999999999998876 66788999999
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCC-------------------------------------CCHH--------------
Q 036577 150 NCFCKMGRVSPGFVVLGRILRSCFT-------------------------------------PDAV-------------- 178 (470)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~-------------------------------------~~~~-------------- 178 (470)
.++...|++++|...|+.+ ..... |+..
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 9999999999999998633 21100 1100
Q ss_pred ----------------HHHHHHHHHH--------hcCCHHHHHHHHHHHHhcCCCCC--------cchHHHHHHHHHhcC
Q 036577 179 ----------------TFNSLIKGLC--------AESRIMEAAALFTKLKAFGCEPN--------VITYSTLINGLCRTG 226 (470)
Q Consensus 179 ----------------~~~~l~~~~~--------~~g~~~~a~~~~~~~~~~g~~~~--------~~~~~~l~~~~~~~g 226 (470)
....+...+. ..|++++|..+|+++.+.. |+ ..++..+...+...|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcc
Confidence 1112222211 1247889999999998753 43 234667778888999
Q ss_pred ChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 036577 227 HTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNE 306 (470)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 306 (470)
++++|.+.++++.... |+...+..+...+...|++++|.+.++.+.... +.+..++..+...+...|++++
T Consensus 258 ~~~~A~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 258 NLLDAQVLLQESINLH--------PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp CHHHHHHHHHHHHHHC--------CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 9999999999999865 458889999999999999999999999998764 3468889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 307 AKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
|...++++.+.. +.+...+..+..++...|++++|...++++.+..+. +...+..+...+...|++++|...|+++.+
T Consensus 329 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999998875 445678889999999999999999999999988644 677899999999999999999999999876
Q ss_pred CC-----CCCCHHHHHHHHHHHHHc----------CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 036577 387 NR-----CMHDVFSYSILINGYCKN----------KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 387 ~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
.. .......+.....++... |++++|...|+++.+... .+...+..+...+...|++++|.+.|
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 42 111333455566778888 999999999999997632 36778999999999999999999999
Q ss_pred HHHHHc
Q 036577 452 DEMRRD 457 (470)
Q Consensus 452 ~~m~~~ 457 (470)
+++.+.
T Consensus 486 ~~al~~ 491 (537)
T 3fp2_A 486 EDSAIL 491 (537)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999873
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-23 Score=200.40 Aligned_cols=343 Identities=13% Similarity=0.008 Sum_probs=286.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
....|......+.+.|++++|+..|+++.+.+ |+...+..+..++...|++++|.+.++++++.+ +.+..+|..++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 35678888999999999999999999999875 799999999999999999999999999999875 557789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC------------------------------------------------------
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPN------------------------------------------------------ 211 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~------------------------------------------------------ 211 (470)
+|...|++++|...|+++...+. ++
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 99999999999999999877642 11
Q ss_pred -------------------------cchHHHHHHHHHh---cCChHHHHHHHHHHHh-----c--CCCCCcccCCCHhhH
Q 036577 212 -------------------------VITYSTLINGLCR---TGHTIVALNLFEEMAN-----G--NGEIGVVCEPNTVTY 256 (470)
Q Consensus 212 -------------------------~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~--~~~~~~~~~~~~~~~ 256 (470)
...+......+.. .|++++|+..|+++.. . .+......+.+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1222223333333 8999999999999987 3 110000003346788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 036577 257 TTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN 336 (470)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (470)
..+...+...|++++|...++.+.... |+...+..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence 889999999999999999999998864 338889999999999999999999999998875 55677889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 036577 337 GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLY 416 (470)
Q Consensus 337 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (470)
|++++|...++++.+.... +...+..++..+...|++++|...++.+.+.. +.+...+..+..++...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999988654 67789999999999999999999999998764 446788999999999999999999999
Q ss_pred HHHHHCCCC-CC----HhHHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 036577 417 SEMLSKGIK-PD----VVIYNTLFIGLFE---IHQVERAFKLFDEMRRD 457 (470)
Q Consensus 417 ~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~ 457 (470)
+++.+.... ++ ...|..+...+.. .|++++|.+.++++.+.
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 999864221 11 3388899999999 99999999999999874
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-21 Score=178.64 Aligned_cols=318 Identities=13% Similarity=0.055 Sum_probs=236.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKG 186 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (470)
+..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4556666677777777777777777766653 4456667777777777777777777777776653 3355667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC--CCcchHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCC
Q 036577 187 LCAESRIMEAAALFTKLKAFGCE--PNVITYSTL------------INGLCRTGHTIVALNLFEEMANGNGEIGVVCEPN 252 (470)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (470)
+...|++++|...|+++.+.... .+...+..+ ...+...|++++|++.++++.... +.+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~ 153 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-------VWD 153 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCc
Confidence 77777777777777777654210 123333333 577889999999999999998876 567
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHH-----
Q 036577 253 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFN----- 327 (470)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 327 (470)
...+..+..++...|++++|...++.+.... +.+...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH
Confidence 8889999999999999999999999998864 4578889999999999999999999999998764 33344333
Q ss_pred -------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036577 328 -------VIMDELCKNGKMDEASRLLDLMIQIGVRPNA----FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSY 396 (470)
Q Consensus 328 -------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (470)
.+...+.+.|++++|...++++.+.... +. ..+..+..++...|++++|...+++..+.. +.+...|
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 309 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHH
Confidence 2356688899999999999998887543 33 234557788889999999999999888763 4478888
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHH
Q 036577 397 SILINGYCKNKEIEGALSLYSEMLSKGIKPD-VVIYNTLFIGLF 439 (470)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 439 (470)
..+..++...|++++|...|+++.+. .|+ ...+..+..+..
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 89999999999999999999999865 344 445555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-21 Score=178.31 Aligned_cols=312 Identities=10% Similarity=0.029 Sum_probs=262.0
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 157 (470)
|..+...|++++|+..|+.+++..|. +..+|..+..++...|++++|+..|+++.+.. +.+...+..+..++...|+
T Consensus 10 ~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 10 GKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCC
Confidence 44456778999999999999998886 88999999999999999999999999998874 5578899999999999999
Q ss_pred cchHHHHHHHHHhCCCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 036577 158 VSPGFVVLGRILRSCFT---PDAVTFNSL------------IKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGL 222 (470)
Q Consensus 158 ~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 222 (470)
+++|...++++.+.. + .+...+..+ ...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 87 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECF 164 (359)
T ss_dssp HHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 999999999999874 3 345555555 578899999999999999998764 45678888999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHH----------
Q 036577 223 CRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN---------- 292 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---------- 292 (470)
...|++++|...++++.... +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLK-------SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 99999999999999999876 6688899999999999999999999999998753 22334333
Q ss_pred --HHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 036577 293 --SLIHGFCYANDWNEAKCLLIEMMDQGVQPNV----VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 366 (470)
Q Consensus 293 --~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (470)
.+...+.+.|++++|...++++.+.. +.+. ..+..+..++...|++++|...++.+.+..+. +..++..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 23667899999999999999998864 2233 23556778999999999999999999987543 7889999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 367 GFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
.+...|++++|...|+++.+.. +.+...+..+..+...
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 9999999999999999999874 3366777766665543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-20 Score=184.77 Aligned_cols=335 Identities=9% Similarity=-0.001 Sum_probs=272.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
....|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.++++++.. +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 45678889999999999999999999999875 6788999999999999999999999999999875 557889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcc----------------------------------------------------
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPNVI---------------------------------------------------- 213 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~---------------------------------------------------- 213 (470)
++...|++++|...|+.+... |+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLN---GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 999999999999999644211 1110
Q ss_pred -----------------hHHHHHHHHH--------hcCChHHHHHHHHHHHhcCCCCCcccCCC-------HhhHHHHHH
Q 036577 214 -----------------TYSTLINGLC--------RTGHTIVALNLFEEMANGNGEIGVVCEPN-------TVTYTTIID 261 (470)
Q Consensus 214 -----------------~~~~l~~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~ 261 (470)
....+...+. ..|++++|..+++++.... +.+ ..++..+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-------TVDDPLRENAALALCYTGI 251 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-------CCcchhhHHHHHHHHHHHH
Confidence 1111111111 1247889999999998765 333 335777778
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH
Q 036577 262 GLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 341 (470)
Q Consensus 262 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 341 (470)
.+...|++++|...++.+... .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 889999999999999999886 4568889999999999999999999999998875 5578889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 342 ASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...|+++.+
T Consensus 329 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999988654 66889999999999999999999999998864 44778899999999999999999999999886
Q ss_pred CCC-----CCCHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHc
Q 036577 422 KGI-----KPDVVIYNTLFIGLFEI----------HQVERAFKLFDEMRRD 457 (470)
Q Consensus 422 ~~~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~ 457 (470)
... ......+..+...+... |++++|...++++.+.
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 421 11222344556777777 9999999999999873
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-18 Score=164.77 Aligned_cols=341 Identities=13% Similarity=0.043 Sum_probs=296.0
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK---- 154 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---- 154 (470)
..+++++|+..|+...+.+ ++.++..|...|.. .+++++|+..|++..+.| +...+..|...|..
T Consensus 55 ~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 55 TTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 4679999999999998863 67888999999998 999999999999998865 67788889999988
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cC
Q 036577 155 MGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCA----ESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR----TG 226 (470)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g 226 (470)
.+++++|...|++..+.| +...+..|...|.. .+++++|++.|++..+.| +...+..+...|.. .+
T Consensus 128 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 201 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVER 201 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCc
Confidence 889999999999999876 67788889999987 889999999999998864 67788888888888 89
Q ss_pred ChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--
Q 036577 227 HTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY-- 300 (470)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 300 (470)
+.++|.+.|++..+.+ +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|..
T Consensus 202 ~~~~A~~~~~~a~~~~---------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 202 NDAISAQWYRKSATSG---------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGL 269 (490)
T ss_dssp CHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCC
Confidence 9999999999998754 56778888888886 889999999999998865 56677778888877
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC-
Q 036577 301 --ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN-----GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG- 372 (470)
Q Consensus 301 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 372 (470)
.+++++|...|++..+.+ +...+..+...|... +++++|...+++..+.+ +...+..+...|...|
T Consensus 270 ~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGS 343 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Confidence 899999999999998765 456777788888887 89999999999999875 5567788888888766
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cC
Q 036577 373 --RVNRAKELFVSMESNRCMHDVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE----IH 442 (470)
Q Consensus 373 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 442 (470)
+.++|.+.|++..+.+ +...+..+...|.. .+++++|+.+|++..+.+ +...+..|...|.. .+
T Consensus 344 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred cccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCC
Confidence 8899999999999875 78899999999999 899999999999999875 57788888888988 89
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 036577 443 QVERAFKLFDEMRRDGVA 460 (470)
Q Consensus 443 ~~~~A~~~~~~m~~~g~~ 460 (470)
+.++|.++|++..+.|..
T Consensus 418 d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp CHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCC
Confidence 999999999999986643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-20 Score=170.58 Aligned_cols=284 Identities=10% Similarity=-0.016 Sum_probs=142.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
++..+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+..++..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33444555555555555555555555555443 3333444445555555555555555555555432 233444555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHH
Q 036577 186 GLCAES-RIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC 264 (470)
Q Consensus 186 ~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (470)
.+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|++.++++.... +.+...+..+...+.
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-------KGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-------TTCSHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHH
Confidence 555555 5555555555554432 2234444555555555555555555555554443 223334444444445
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 036577 265 KEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASR 344 (470)
Q Consensus 265 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 344 (470)
..|++++|.+.++++.. .. +.+...+..+...+...|++++|..
T Consensus 171 ~~~~~~~A~~~~~~al~-----------------------------------~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 171 LTNNSKLAERFFSQALS-----------------------------------IA-PEDPFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HTTCHHHHHHHHHHHHT-----------------------------------TC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH-----------------------------------hC-CCChHHHHHHHHHHHHcccHHHHHH
Confidence 55555555555544444 32 2334444444555555555555555
Q ss_pred HHHHHHHcC--------CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 036577 345 LLDLMIQIG--------VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLY 416 (470)
Q Consensus 345 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (470)
.++++.+.. .+.+..++..+..++...|++++|...+++..+.. +.+...|..+..++...|++++|.+.+
T Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 555444421 01223455555666666666666666666555542 224555666666666666666666666
Q ss_pred HHHHHCCCCC-CHhHHHHHHHHH
Q 036577 417 SEMLSKGIKP-DVVIYNTLFIGL 438 (470)
Q Consensus 417 ~~~~~~~~~p-~~~~~~~l~~~~ 438 (470)
+++.+. .| +...+..+..++
T Consensus 294 ~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 294 HTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHcc--CCCchHHHHHHHHHH
Confidence 665543 22 344555555544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-20 Score=168.26 Aligned_cols=277 Identities=12% Similarity=0.053 Sum_probs=216.5
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG- 156 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g- 156 (470)
+..+...|++++|+.+|+.+++..|. +...+..++.++...|++++|..+++++.+.. +.+...+..+...+...|
T Consensus 29 a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 29 AERHYYNCDFKMCYKLTSVVMEKDPF--HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhh
Confidence 34456789999999999999998887 67788888899999999999999999998875 567789999999999999
Q ss_pred CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 036577 157 RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFE 236 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 236 (470)
++++|.+.++++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++
T Consensus 106 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 106 KNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999874 4567889999999999999999999999998864 3356778889999999999999999999
Q ss_pred HHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHccCCHHHHH
Q 036577 237 EMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN--------INPNVVTYNSLIHGFCYANDWNEAK 308 (470)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~ 308 (470)
++.... +.+...+..+...+...|++++|...++++.... .+....++..+..+|...|++++|.
T Consensus 184 ~al~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 184 QALSIA-------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhC-------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999876 5677889999999999999999999998887631 1223455666666666666666666
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 036577 309 CLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 368 (470)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (470)
..+++..+.. +.+...+..+..++...|++++|...++++.+..+. +...+..+..++
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 6666666543 334455555666666666666666666665554322 445555555554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-20 Score=174.14 Aligned_cols=309 Identities=11% Similarity=0.012 Sum_probs=184.7
Q ss_pred CccccCChhHHHH-HHHHHHhcCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 80 GDITTITPNEAFC-IFDYMLNMRPSPP--PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (470)
Q Consensus 80 ~~~~~~~~~~A~~-~f~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 156 (470)
.+...|++++|+. .|+......+..| +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445578888888 8887776655422 34567788888888889999999988888875 567778888888888888
Q ss_pred CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 036577 157 RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFE 236 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 236 (470)
++++|...++++++.. +.+..++..+..+|...|++++|.+.++++.... +.+...+..+... .
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~------- 176 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------A------- 176 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------h-------
Confidence 8888888888888764 4577788888888888888888888888888753 1122222111000 0
Q ss_pred HHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036577 237 EMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP-NVVTYNSLIHGFCYANDWNEAKCLLIEMM 315 (470)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (470)
.. ..+ ...+..+...+ ..|++++|...++++....... +..++..+...|...|++++|...++++.
T Consensus 177 ---~~-------~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 177 ---GG-------AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp --------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---hh-------hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00 000 00111111222 5555566666665555432111 35555556666666666666666666655
Q ss_pred HCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC------
Q 036577 316 DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRC------ 389 (470)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------ 389 (470)
+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+..+|.+.|++++|...|+++.+...
T Consensus 245 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 322 (368)
T 1fch_A 245 SVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322 (368)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred HhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcc
Confidence 543 334556666666666666666666666666655322 455666666666666666666666666554311
Q ss_pred ----CCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 390 ----MHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 390 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
+....+|..+..+|...|++++|..++++.
T Consensus 323 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 323 GEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp --CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred ccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 012567777777777777777777766543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-20 Score=170.08 Aligned_cols=327 Identities=11% Similarity=-0.026 Sum_probs=234.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHH-HHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCcch
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLS-LFKRLNSTGL-FP--DLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~m~~~~~-~~--~~~~~~~li~~~~~~g~~~~ 160 (470)
..++.+...|+.+.+.++. ++...|++++|++ .|++...... .| +...+..+...+...|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE------------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHcCCch------------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 3455566666666543321 2334588999998 8887655421 11 34568889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
|...++++++.. +.+..++..+..+|...|++++|...|+++.+.. +.+..++..+...+...|++++|++.++++..
T Consensus 83 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 83 AVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999875 5678899999999999999999999999998874 44678899999999999999999999999998
Q ss_pred cCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 036577 241 GNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ 320 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (470)
.. +.+...+..+... .. .. . ....+..+... ...|++++|...++++.+.. +
T Consensus 161 ~~-------~~~~~~~~~~~~~-------~~-------~~----~-~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~-p 212 (368)
T 1fch_A 161 YT-------PAYAHLVTPAEEG-------AG-------GA----G-LGPSKRILGSL-LSDSLFLEVKELFLAAVRLD-P 212 (368)
T ss_dssp TS-------TTTGGGCC----------------------------------CTTHHH-HHHHHHHHHHHHHHHHHHHS-T
T ss_pred hC-------cCcHHHHHHHHHH-------hh-------hh----c-ccHHHHHHHHH-hhcccHHHHHHHHHHHHHhC-c
Confidence 76 2232222211111 00 00 0 01112222333 38899999999999998874 3
Q ss_pred C--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036577 321 P--NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSI 398 (470)
Q Consensus 321 ~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 398 (470)
. +..++..+...+...|++++|...++++.+..+. +..++..++..+...|++++|...|+++.+.. +.+...+..
T Consensus 213 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 290 (368)
T 1fch_A 213 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYN 290 (368)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 3 5788999999999999999999999999987543 68899999999999999999999999998864 457889999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCC----------CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 399 LINGYCKNKEIEGALSLYSEMLSKGIKP----------DVVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
+..+|.+.|++++|...|+++.+..... ...+|..+..++...|++++|..++++..
T Consensus 291 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 9999999999999999999988642211 16789999999999999999999887543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-16 Score=153.85 Aligned_cols=333 Identities=12% Similarity=0.042 Sum_probs=285.6
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCcch
Q 036577 89 EAFCIFDYMLNMRPSPPPVSSFNILFGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK----MGRVSP 160 (470)
Q Consensus 89 ~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~ 160 (470)
.++..+....+. .++.++..+...|.. .+++++|+..|++..+.| +...+..|...|.. .++.++
T Consensus 25 ~~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 25 VNLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp CCHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 345556555543 378888889988888 899999999999998865 67788899999998 899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHH
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCA----ESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR----TGHTIVAL 232 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~a~ 232 (470)
|.++|++..+.| +...+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|+
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999875 66788889999988 889999999999998865 56778888888887 78999999
Q ss_pred HHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCH
Q 036577 233 NLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY----ANDW 304 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~ 304 (470)
+.|++..+.+ +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|.. .+++
T Consensus 172 ~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 172 EWYSKAAEQG---------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp HHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHCC---------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 9999998754 57788889999988 899999999999998875 66778888888886 8899
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC-----CCHH
Q 036577 305 NEAKCLLIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT-----GRVN 375 (470)
Q Consensus 305 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~ 375 (470)
++|...|++..+.+ +...+..+...|.. .++.++|...|++..+.+ +...+..+...|... ++.+
T Consensus 240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHH
Confidence 99999999998865 45677778888887 899999999999998764 566777888888877 8999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHH
Q 036577 376 RAKELFVSMESNRCMHDVFSYSILINGYCKNK---EIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE----IHQVERAF 448 (470)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 448 (470)
+|...|++..+.+ +...+..+...|...| ++++|+++|++..+.| +...+..|...|.. .+++++|.
T Consensus 314 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 314 QAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 9999999999876 6678888999998877 8899999999999873 67788889999988 89999999
Q ss_pred HHHHHHHHcC
Q 036577 449 KLFDEMRRDG 458 (470)
Q Consensus 449 ~~~~~m~~~g 458 (470)
++|++..+.|
T Consensus 388 ~~~~~A~~~~ 397 (490)
T 2xm6_A 388 IWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhCC
Confidence 9999998876
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-20 Score=170.39 Aligned_cols=266 Identities=12% Similarity=-0.045 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhH
Q 036577 177 AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTY 256 (470)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (470)
...+..+...+.+.|++++|+..|+++.+.. +.+..+|..+...+...|++++|++.|+++.... +.+..++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~ 136 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------PNNLKAL 136 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHHH
Confidence 3446667777777777777777777776653 3356667777777777777777777777777654 4556777
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHhH
Q 036577 257 TTIIDGLCKEGFVDKAKELFLKMKDENIN---------PNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQP--NVVT 325 (470)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 325 (470)
..+..+|...|++++|.+.++++...... .....+..+...+...|++++|...++++.+.. +. +...
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 215 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDL 215 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHH
Confidence 77777777777777777777777653210 012334455778889999999999999998874 33 6788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
+..+...+...|++++|...++++.+..+. +..+|..++.+|...|++++|...|+++.+.. +.+..+|..+..+|..
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 999999999999999999999999987544 78899999999999999999999999988864 4468899999999999
Q ss_pred cCChhHHHHHHHHHHHCCCC-----------CCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 036577 406 NKEIEGALSLYSEMLSKGIK-----------PDVVIYNTLFIGLFEIHQVERAFKLFDE 453 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (470)
.|++++|...|+++++.... .+..+|..+..++...|+.+.+.++.++
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999998864211 1357899999999999999998887655
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.8e-20 Score=169.70 Aligned_cols=236 Identities=11% Similarity=-0.025 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888889999999999999999988765 5678888999999999999999999999988764 456788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC-cch----------HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHh
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPN-VIT----------YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTV 254 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~----------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (470)
+|...|++++|+..|+++.+.. |+ ... +..+...+...|++++|++.++++....+ ...+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~ 214 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG-----DMIDPD 214 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSC-----SSCCHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc-----CccCHH
Confidence 9999999999999998887653 22 222 22346666777777777777777776552 011566
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 036577 255 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELC 334 (470)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 334 (470)
++..+...+...|++++|.+.|+++.+.. +.+..+|..+..+|...|++++|...|+++.+.. +.+...+..+..+|.
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH
Confidence 67777777777777777777777666542 2345666666666666666666666666666553 334555666666666
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 036577 335 KNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 335 ~~g~~~~a~~~~~~~~~~ 352 (470)
+.|++++|...++++.+.
T Consensus 293 ~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHTCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 666666666666666554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-17 Score=157.17 Aligned_cols=355 Identities=11% Similarity=0.066 Sum_probs=268.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCcchHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC-FCKMGRVSPGF 162 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~ 162 (470)
.|++++|..+|+.+++..|. +...|..++..+.+.|++++|..+|+++++. .|+...|...+.. ....|+.+.|.
T Consensus 25 ~~~~~~a~~~~e~al~~~P~--~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPS--SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred hCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHH
Confidence 57899999999999998887 8999999999999999999999999999987 4688888777753 34568888776
Q ss_pred H----HHHHHHh-CCCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHH--
Q 036577 163 V----VLGRILR-SCFT-PDAVTFNSLIKGLCA---------ESRIMEAAALFTKLKAFGCEPNV---ITYSTLINGL-- 222 (470)
Q Consensus 163 ~----~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~g~~~~~---~~~~~l~~~~-- 222 (470)
+ +|++.+. .|.. ++...|...+....+ .|+++.|..+|++..+. |.. ..|.......
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~ 177 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEG 177 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHh
Confidence 6 6666655 3433 356778887777655 67888999999888763 221 2222111100
Q ss_pred -----------HhcCChH------------------------------------------------------------HH
Q 036577 223 -----------CRTGHTI------------------------------------------------------------VA 231 (470)
Q Consensus 223 -----------~~~g~~~------------------------------------------------------------~a 231 (470)
.+.+++. .+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a 257 (530)
T 2ooe_A 178 INIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV 257 (530)
T ss_dssp HCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred hchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence 0011112 33
Q ss_pred HHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh-------CCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 232 LNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK-------EGFVD-------KAKELFLKMKDENINPNVVTYNSLIHG 297 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~ 297 (470)
..+|+++.... +.+...|..++..+.+ .|+++ +|..+|++....-.+.+...|..++..
T Consensus 258 ~~~y~~al~~~-------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 258 MFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 44555554443 4567778888887775 79987 899999999863234578899999999
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCC-H-hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHcCCCH
Q 036577 298 FCYANDWNEAKCLLIEMMDQGVQPN-V-VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG-FCLTGRV 374 (470)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~ 374 (470)
+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|..+|++..+.... +...|...+.. +...|+.
T Consensus 331 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~ 407 (530)
T 2ooe_A 331 EESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDK 407 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCH
T ss_pred HHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCCh
Confidence 99999999999999999986 443 3 57888888899999999999999999986432 33333333222 3368999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC--HhHHHHHHHHHHhcCCHHHHHHHH
Q 036577 375 NRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGI-KPD--VVIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
++|..+|+..++.. +.+...|..++..+.+.|+.++|..+|++.+..+. .|+ ...|...+......|+.+.+.++.
T Consensus 408 ~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 408 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988763 44789999999999999999999999999998642 332 448888888888999999999999
Q ss_pred HHHHH
Q 036577 452 DEMRR 456 (470)
Q Consensus 452 ~~m~~ 456 (470)
+++.+
T Consensus 487 ~r~~~ 491 (530)
T 2ooe_A 487 KRRFT 491 (530)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-18 Score=157.28 Aligned_cols=263 Identities=10% Similarity=-0.006 Sum_probs=177.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHH
Q 036577 181 NSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTII 260 (470)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (470)
..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+.
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la 96 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------PKDIAVHAALA 96 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------cCCHHHHHHHH
Confidence 334444444555555555555544432 2233444444455555555555555555554443 33444455555
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHH-------------H-HH-HHHccCCHHHHHHHHHHHHHCCCCCCHhH
Q 036577 261 DGLCKEGFVDKAKELFLKMKDENINPNVVTYNS-------------L-IH-GFCYANDWNEAKCLLIEMMDQGVQPNVVT 325 (470)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l-i~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 325 (470)
..+...|++++|.+.++++..... .+...+.. + .. .+...|++++|...++++.+.. +.+...
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 555555555555555555544311 11111111 1 22 3677888999999999988765 456788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
+..+...+...|++++|...++++.+.... +...+..++..+...|++++|...++++.+.. +.+...+..+..+|..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 888899999999999999999999887543 67888899999999999999999999988764 4478889999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCC-----------CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 406 NKEIEGALSLYSEMLSKGIKP-----------DVVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
.|++++|.+.++++.+..... +...|..+..++...|++++|..++++..
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999988653221 36688889999999999999999887654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-17 Score=158.84 Aligned_cols=351 Identities=13% Similarity=-0.022 Sum_probs=221.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC-----
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNST--------GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS----- 171 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----- 171 (470)
.....||.+..++...|++++|++.|++..+. ..+....+|..+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 44667888888888888888888888876442 11334567888888888888888888888877642
Q ss_pred C-C-CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCcchHHHHHHH---HHhcCChHHHHHHHHHHHhcCCC
Q 036577 172 C-F-TPDAVTFNSLIKGLCAE--SRIMEAAALFTKLKAFGCEPNVITYSTLING---LCRTGHTIVALNLFEEMANGNGE 244 (470)
Q Consensus 172 ~-~-~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~ 244 (470)
+ . .....++..+..++... +++++|+..|++..+.. |-+...+..+..+ +...++.++|++.+++.....
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--
Confidence 1 1 12345566555555543 46888888888887753 2234444444443 344577778888888887765
Q ss_pred CCcccCCCHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 036577 245 IGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ 320 (470)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (470)
+.+...+..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+.+..+.. +
T Consensus 206 -----p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 278 (472)
T 4g1t_A 206 -----PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-P 278 (472)
T ss_dssp -----SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred -----CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-C
Confidence 4556666666555544 456778888888877653 3467778888888888888888888888887764 4
Q ss_pred CCHhHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHH
Q 036577 321 PNVVTFNVIMDELCKN-------------------GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELF 381 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (470)
.+..++..+..+|... +..++|...++...+.++. +...+..+...+...|++++|...|
T Consensus 279 ~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 279 NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHH
Confidence 4556666666555332 2356677777777776543 5567778888888888888888888
Q ss_pred HHHHHCCCCCCH--HHHHHHHH-HHHHcCChhHHHHHHHHHHHCCC-----------------------CCCHhHHHHHH
Q 036577 382 VSMESNRCMHDV--FSYSILIN-GYCKNKEIEGALSLYSEMLSKGI-----------------------KPDVVIYNTLF 435 (470)
Q Consensus 382 ~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~-----------------------~p~~~~~~~l~ 435 (470)
++.++....+.. ..+..+.. .+...|+.++|+..|++.++... +.+..+|..|.
T Consensus 358 ~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG 437 (472)
T 4g1t_A 358 QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLA 437 (472)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 888876433321 12222322 23467888888888877765321 23466899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC-CCCChhhh
Q 036577 436 IGLFEIHQVERAFKLFDEMRRDG-VAADTWTY 466 (470)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~ 466 (470)
..+...|++++|++.|++.++.| ..|+..++
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHCC----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999999754 45665544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-18 Score=156.71 Aligned_cols=234 Identities=11% Similarity=-0.079 Sum_probs=144.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
+...|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34557778888899999999999999988764 5677888889999999999999999999988864 557788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHH--------------HH-HHHhcCChHHHHHHHHHHHhcCCCCCcccC
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPNVITYSTL--------------IN-GLCRTGHTIVALNLFEEMANGNGEIGVVCE 250 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (470)
.|...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|.+.++++.... +
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~ 169 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-------P 169 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-------T
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-------C
Confidence 9999999999999999988753 2233333333 11 2444555555555555555543 3
Q ss_pred CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIM 330 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 330 (470)
.+...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 247 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMA 247 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 344555555555555555555555555554432 1234444444444444455555544444444432 22333444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 036577 331 DELCKNGKMDEASRLLDLMIQ 351 (470)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~ 351 (470)
.++...|++++|...++++.+
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 444444444444444444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=163.88 Aligned_cols=282 Identities=12% Similarity=0.116 Sum_probs=136.3
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGF 162 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 162 (470)
..|++++|.++++++ +.+.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 346799999999998 2345999999999999999999999965 357779999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 163 VVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877764 4567889999999999999999998884 267789999999999999999999999966
Q ss_pred CCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 036577 243 GEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN 322 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 322 (470)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...
T Consensus 149 -----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ 206 (449)
T 1b89_A 149 -----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 206 (449)
T ss_dssp -----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTC
T ss_pred -----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhC
Confidence 26899999999999999999999988 27899999999999999999996655442 234
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC--CCHHHHHHHHHHHHHCCCCC------CHH
Q 036577 323 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT--GRVNRAKELFVSMESNRCMH------DVF 394 (470)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~ 394 (470)
+.....++..|.+.|++++|..+++...... +-....|+.+...|++- +++.+..+.|.. +.+++| +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHH
Confidence 4445678899999999999999999998776 44677888888887755 344455554432 122222 566
Q ss_pred HHHHHHHHHHHcCChhHHHHH
Q 036577 395 SYSILINGYCKNKEIEGALSL 415 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~ 415 (470)
.|..+.-.|...++++.|...
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHH
Confidence 789999999999999998774
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-18 Score=149.55 Aligned_cols=249 Identities=15% Similarity=0.140 Sum_probs=137.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
.|+++.|+..++.+....|. ........+.++|...|+++.|+..++. . -+|+..++..+...+...|+.++|++
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~-~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPE-RDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHH-HHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCch-hhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 45666666666655443332 1123444556666667776666665433 1 24455566666666666666666666
Q ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 164 VLGRILRSCF-TPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
.+++++..+. +.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++....
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 6666665543 33445555555666666666666666655 2455566666666666666666666666666543
Q ss_pred CCCCcccCCCHhh--HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 036577 243 GEIGVVCEPNTVT--YTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ 320 (470)
Q Consensus 243 ~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (470)
+.+... ...++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..+.. +
T Consensus 161 -------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 161 -------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp -------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred -------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 111111 111223333345566666666665554 23455555556666666666666666666655543 3
Q ss_pred CCHhHHHHHHHHHHHcCCHHH-HHHHHHHHHHc
Q 036577 321 PNVVTFNVIMDELCKNGKMDE-ASRLLDLMIQI 352 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 352 (470)
.+..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 345555555555555555543 34555555554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-16 Score=153.51 Aligned_cols=349 Identities=12% Similarity=0.054 Sum_probs=254.9
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 036577 94 FDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCF 173 (470)
Q Consensus 94 f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 173 (470)
|+..++..|. +..+|..++.. .+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|+++++..
T Consensus 2 le~al~~~P~--~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~- 76 (530)
T 2ooe_A 2 AEKKLEENPY--DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV- 76 (530)
T ss_dssp HHHHHHHCTT--CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred hhhHhhhCCC--CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence 6677777776 89999999984 78999999999999999874 6678899999999999999999999999999873
Q ss_pred CCCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHhc-CCCC-CcchHHHHHHHHHh---------cCChHHHHHHHHH
Q 036577 174 TPDAVTFNSLIKGL-CAESRIMEAAA----LFTKLKAF-GCEP-NVITYSTLINGLCR---------TGHTIVALNLFEE 237 (470)
Q Consensus 174 ~~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~ 237 (470)
|+...|..++... ...|+.+.|.+ +|++.... |..| +...|...+....+ .|+++.|..+|++
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 6888888777543 35677776655 77776543 5443 45567777766554 6889999999999
Q ss_pred HHhcCCCCCcccCCCHhhHH------------------------------------------------------------
Q 036577 238 MANGNGEIGVVCEPNTVTYT------------------------------------------------------------ 257 (470)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 257 (470)
...... ......|.
T Consensus 156 al~~P~------~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 156 GCVNPM------INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HTTSCC------TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHhchh------hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 876321 11112222
Q ss_pred -----HHHHHHHhC----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHH
Q 036577 258 -----TIIDGLCKE----GFV----DKAKELFLKMKDENINPNVVTYNSLIHGFCY-------ANDWN-------EAKCL 310 (470)
Q Consensus 258 -----~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~ 310 (470)
..+...... ++. ..+..+|+++... .+.+...|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 111111110 111 2344455555543 13356667777776664 68876 89999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 036577 311 LIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN-AFVYNTLMDGFCLTGRVNRAKELFVSMESNRC 389 (470)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 389 (470)
+++..+.-.+.+...|..++..+.+.|++++|..+|+++++..+. + ...|..++..+.+.|++++|..+|++..+..
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~- 386 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 386 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 999886323556788899999999999999999999999986432 3 3578888888889999999999999998763
Q ss_pred CCCHHHHHHHHHH-HHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036577 390 MHDVFSYSILING-YCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 390 ~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (470)
+.+...|...+.. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++....+
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 2233334333322 346899999999999998753 2257889999999999999999999999999853
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-17 Score=148.48 Aligned_cols=274 Identities=10% Similarity=-0.003 Sum_probs=191.3
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 036577 150 NCFCKMGRVSPGFVVLGRILRSCFTPD--AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGH 227 (470)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 227 (470)
.-....|++..|+...+..... .|+ ......+.++|...|+++.|+..++.. -+|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 4455678888888877765443 333 235556778888888888888766441 34566777778888888888
Q ss_pred hHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 036577 228 TIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEA 307 (470)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 307 (470)
.++|++.++++...+. .+.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|
T Consensus 81 ~~~A~~~l~~ll~~~~-----~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 81 RDAIVAELDREMSRSV-----DVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HHHHHHHHHHHHHSCC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 8888888888776531 134566677777888888888888888876 35777888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHhHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 036577 308 KCLLIEMMDQGVQPNVVTF---NVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSM 384 (470)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (470)
.+.++++.+.. |+.... ...+..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...|+++
T Consensus 150 ~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 150 RKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888763 442211 1222333445788888888888888743 47788888888888888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 036577 385 ESNRCMHDVFSYSILINGYCKNKEIEG-ALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFK 449 (470)
Q Consensus 385 ~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 449 (470)
.+.. +.+..++..++..+...|+.++ +.++++++++. .|+.... .+...+.+.++++..
T Consensus 227 l~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~---~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 227 LDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFI---KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHH---HHHHHHHHHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHH---HHHHHHHHHHHHHHH
Confidence 7764 4477788888888888888765 56788888755 4443322 233444444554443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-16 Score=153.49 Aligned_cols=344 Identities=11% Similarity=-0.044 Sum_probs=236.1
Q ss_pred CCCCccccCChhHHHHHHHHHHhc-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCCH
Q 036577 77 SGEGDITTITPNEAFCIFDYMLNM-------RPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST-----G--LFPDL 142 (470)
Q Consensus 77 ~~~~~~~~~~~~~A~~~f~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----~--~~~~~ 142 (470)
.|..+...|++++|++.|+++++. ...+....+|+.+..+|...|++++|...+++..+. + .....
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 344556678999999999988753 112236788999999999999999999999887543 1 12245
Q ss_pred HHHHHHHHHHHhcC--CcchHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 036577 143 YTYNILINCFCKMG--RVSPGFVVLGRILRSCFTPDAVTFNSLIKG---LCAESRIMEAAALFTKLKAFGCEPNVITYST 217 (470)
Q Consensus 143 ~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 217 (470)
.++..+..++...| ++++|.+.|++.++.. +.+...+..+..+ +...++.++|++.+++..+.. +.+...+..
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~ 214 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHH
Confidence 67777766666654 6899999999999864 3455666655555 345678889999999988763 234555655
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 036577 218 LINGLCR----TGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 293 (470)
Q Consensus 218 l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 293 (470)
+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +.+..++..
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKA-------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 5555544 467889999999998876 6678889999999999999999999999998763 335666766
Q ss_pred HHHHHHcc-------------------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 036577 294 LIHGFCYA-------------------NDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV 354 (470)
Q Consensus 294 li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 354 (470)
+..+|... +.++.|...+++..+.. +.+...+..+...+...|++++|...|++..+...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 66655322 23567888888877764 45567788899999999999999999999998755
Q ss_pred CCCHh--HHHHHHH-HHHcCCCHHHHHHHHHHHHHCC-----------------------CCCCHHHHHHHHHHHHHcCC
Q 036577 355 RPNAF--VYNTLMD-GFCLTGRVNRAKELFVSMESNR-----------------------CMHDVFSYSILINGYCKNKE 408 (470)
Q Consensus 355 ~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~ 408 (470)
.+... .+..+.. .....|+.++|+..|++.++.. -+.+..+|..+..+|...|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~ 445 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK 445 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 43321 2333333 2357899999999888776532 13366789999999999999
Q ss_pred hhHHHHHHHHHHHCC-CCCCHhHH
Q 036577 409 IEGALSLYSEMLSKG-IKPDVVIY 431 (470)
Q Consensus 409 ~~~A~~~~~~~~~~~-~~p~~~~~ 431 (470)
+++|++.|++.++.+ ..|+...|
T Consensus 446 ~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 446 MQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp CC----------------------
T ss_pred HHHHHHHHHHHHhcCCCCCcHhhc
Confidence 999999999999764 23444433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=158.00 Aligned_cols=282 Identities=12% Similarity=0.100 Sum_probs=138.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036577 119 KNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAA 198 (470)
Q Consensus 119 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 198 (470)
+.|++++|.+.++++. +..+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5688999999999883 235999999999999999999999965 3577799999999999999999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHH
Q 036577 199 LFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLK 278 (470)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 278 (470)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88877764 4567889999999999999999887773 35667999999999999999999999997
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 036577 279 MKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA 358 (470)
Q Consensus 279 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 358 (470)
+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~a 207 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHA 207 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCH
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCH
Confidence 7 36999999999999999999999988 27899999999999999999996555442 2344
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CChhHHHHHHHHHHHCCCCC------CHhH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN--KEIEGALSLYSEMLSKGIKP------DVVI 430 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~ 430 (470)
.-...++..|.+.|.+++|..+++...... +-....|+.+..+|++- ++..+.++.|..-+ +++| +...
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHH
Confidence 446678999999999999999999988765 55788899998888874 34555555544222 3333 4678
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 036577 431 YNTLFIGLFEIHQVERAFKL 450 (470)
Q Consensus 431 ~~~l~~~~~~~g~~~~A~~~ 450 (470)
|..+...|...++++.|...
T Consensus 285 w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHH
Confidence 99999999999999988763
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=170.83 Aligned_cols=138 Identities=12% Similarity=0.103 Sum_probs=119.0
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036577 320 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ---IGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSY 396 (470)
Q Consensus 320 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (470)
..-..+|+++|.+|++.|++++|..+|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33457899999999999999999999988764 588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 036577 397 SILINGYCKNKEI-EGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAAD 462 (470)
Q Consensus 397 ~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 462 (470)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++.++++ +.++.|+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 9999999999984 78999999999999999999999998766554 444444444 4456554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.4e-16 Score=135.18 Aligned_cols=232 Identities=12% Similarity=0.015 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhH
Q 036577 177 AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTY 256 (470)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (470)
...+..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|++.++++....+......+....++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4677888889999999999999999998876 67888999999999999999999999998875421000000015788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 036577 257 TTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN 336 (470)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (470)
..+...+...|++++|.+.|+++... .|+. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 89999999999999999999998875 3443 34566788889999998888763 34556777888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 036577 337 GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLY 416 (470)
Q Consensus 337 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (470)
|++++|...++++.+.... +...+..+...+...|++++|...++...+.. +.+...|..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8999999888888887544 67788888888888888888888888887764 446778888888888888888888888
Q ss_pred HHHHHC
Q 036577 417 SEMLSK 422 (470)
Q Consensus 417 ~~~~~~ 422 (470)
++..+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887754
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-18 Score=168.79 Aligned_cols=137 Identities=10% Similarity=0.121 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHH---CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 036577 286 PNVVTYNSLIHGFCYANDWNEAKCLLIEMMD---QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYN 362 (470)
Q Consensus 286 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 362 (470)
.-..+|+++|++|++.|++++|.++|.+|.+ .|..||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457899999999999999999999988764 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 036577 363 TLMDGFCLTGRV-NRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 427 (470)
Q Consensus 363 ~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 427 (470)
++|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++ ..++.|+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 999999999984 78999999999999999999999998766553 444444444 3345544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-16 Score=134.66 Aligned_cols=226 Identities=10% Similarity=0.015 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC--CCC----HHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCF--TPD----AVTF 180 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~ 180 (470)
...|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|.+.++++.+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777777888888888888888877765 6667777777778888888888877777766321 111 4667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHH
Q 036577 181 NSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTII 260 (470)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (470)
..+...|...|++++|...|++..... |+ ...+...|++++|.+.++++.... +.+...+..+.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~ 146 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN-------PEKAEEARLEG 146 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC-------cchHHHHHHHH
Confidence 777777777777777777777777642 33 234555667777777777776654 44556666777
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 036577 261 DGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMD 340 (470)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 340 (470)
..+...|++++|...++++.... +.+...+..+..+|...|++++|...+++..+.. +.+...+..+..++...|+++
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHH
Confidence 77777777777777777766543 2355666666666666677777777766666553 334556666666666666666
Q ss_pred HHHHHHHHHHHc
Q 036577 341 EASRLLDLMIQI 352 (470)
Q Consensus 341 ~a~~~~~~~~~~ 352 (470)
+|...++.+.+.
T Consensus 225 ~A~~~~~~a~~~ 236 (258)
T 3uq3_A 225 SALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.1e-16 Score=131.17 Aligned_cols=201 Identities=15% Similarity=0.045 Sum_probs=165.5
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 036577 250 EPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVI 329 (470)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 329 (470)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 5677889999999999999999999999998874 4578899999999999999999999999999875 5577889999
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036577 330 MDELCKN-----------GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSI 398 (470)
Q Consensus 330 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 398 (470)
..++... |++++|...+++.++..+. +...+..+..++...|++++|+..|++.++.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 9999999999999998654 77889999999999999999999999998876 68899999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 399 LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+..+|...|++++|+..|+++++... .+...+..+...+...|++++|.+.+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999997643 2667888999999999999999999987653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-15 Score=130.21 Aligned_cols=198 Identities=15% Similarity=0.034 Sum_probs=111.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH
Q 036577 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVV 289 (470)
Q Consensus 210 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 289 (470)
++...+..+...+.+.|++++|+..|++..... +.+...+..+..++.+.|++++|...+++..+.. +.+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~ 74 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLG 74 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Confidence 344455555555555555555555555555443 3445555555555555555555555555555432 22444
Q ss_pred HHHHHHHHHHcc-----------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 036577 290 TYNSLIHGFCYA-----------NDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA 358 (470)
Q Consensus 290 ~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 358 (470)
.+..+..++... |++++|+..+++..+.. +.+...+..+..++...|++++|+..++++++.. .+.
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~ 151 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cch
Confidence 555555555555 77777777777766653 3455666666777777777777777777777665 466
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
..+..+..++...|++++|...|++..+.. +.+...+..+..++...|++++|+..+++.
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 667777777777777777777777766653 336666677777777777777777776654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-15 Score=132.01 Aligned_cols=238 Identities=9% Similarity=0.018 Sum_probs=134.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHH
Q 036577 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP--NVVTY 291 (470)
Q Consensus 214 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~ 291 (470)
.+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.++++......+ ....|
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 77 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF 77 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHH
Confidence 34444555556666666666666665544 3344455566666666666666666666665532111 12235
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT 371 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (470)
..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+..+. +...+..+...+...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHH
Confidence 556666666666666666666665543 334455666666666666666666666666655322 455555555223334
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCC-CCCC------HhHHHHHHHHHHhc
Q 036577 372 GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKE---IEGALSLYSEMLSKG-IKPD------VVIYNTLFIGLFEI 441 (470)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~ 441 (470)
+++++|...|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ...|..+...+...
T Consensus 156 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 46666666666666543 2345566666666666666 666666666665431 1122 13555566666667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCh
Q 036577 442 HQVERAFKLFDEMRRDGVAADT 463 (470)
Q Consensus 442 g~~~~A~~~~~~m~~~g~~p~~ 463 (470)
|++++|.+.++++.+ +.|+.
T Consensus 235 ~~~~~A~~~~~~al~--~~p~~ 254 (272)
T 3u4t_A 235 RDKVKADAAWKNILA--LDPTN 254 (272)
T ss_dssp TCHHHHHHHHHHHHH--HCTTC
T ss_pred CCHHHHHHHHHHHHh--cCccH
Confidence 777777777776665 34443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=8.2e-16 Score=136.00 Aligned_cols=252 Identities=10% Similarity=-0.062 Sum_probs=182.6
Q ss_pred CCccccCChhHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 79 EGDITTITPNEAFCIFDYMLNMRPS--PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (470)
Q Consensus 79 ~~~~~~~~~~~A~~~f~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 156 (470)
......|++++|+..|+.+++..+. +.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcc
Confidence 3445668899999999999987542 1257788999999999999999999999998875 557888999999999999
Q ss_pred CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 036577 157 RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFE 236 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 236 (470)
++++|...++++++.. +.+..++..+..+|...|++++|...|+++.+.. |+.......+..+...|++++|...++
T Consensus 92 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999998864 4467888889999999999999999999988753 555555555555677788999999998
Q ss_pred HHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 036577 237 EMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENIN---PNVVTYNSLIHGFCYANDWNEAKCLLIE 313 (470)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (470)
+..... +++...+ .++..+...++.++|.+.++........ .+...+..+...|.+.|++++|...|++
T Consensus 169 ~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 169 QHFEKS-------DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHHHHS-------CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcC-------CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 877765 3444444 3666777778888888888877654211 0145666677777777777777777777
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 036577 314 MMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 346 (470)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 346 (470)
..+.. |+. +.....++...|++++|+..+
T Consensus 241 al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 241 AVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 76653 221 222244555666666665554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-14 Score=144.73 Aligned_cols=313 Identities=14% Similarity=0.112 Sum_probs=245.2
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 157 (470)
+..+...|.+++|..+|++... ...+.+.++. ..+++++|.++.++. .+..+|..+..++.+.|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 4455677889999999998731 3334444443 668899999998865 346789999999999999
Q ss_pred cchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 036577 158 VSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEE 237 (470)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 237 (470)
+++|.+.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f--- 1189 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF--- 1189 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH---
Confidence 99999999663 477888889999999999999999999887754 4444455688899999888854333
Q ss_pred HHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 238 MANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
.. .++...|..+...|...|++++|...|..+ ..|..+..+|.+.|++++|.+.+.+.
T Consensus 1190 -I~---------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--- 1247 (1630)
T 1xi4_A 1190 -IN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--- 1247 (1630)
T ss_pred -Hh---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh---
Confidence 21 345667778999999999999999999875 37899999999999999999999876
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036577 318 GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYS 397 (470)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 397 (470)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|+
T Consensus 1248 ---~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmft 1318 (1630)
T 1xi4_A 1248 ---NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 1318 (1630)
T ss_pred ---CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHH
Confidence 36688999999999999999988876643 3366777899999999999999999998887665 44666777
Q ss_pred HHHHHHHHc--CChhHHHHHHHHHHHCCCCC------CHhHHHHHHHHHHhcCCHHHHHH
Q 036577 398 ILINGYCKN--KEIEGALSLYSEMLSKGIKP------DVVIYNTLFIGLFEIHQVERAFK 449 (470)
Q Consensus 398 ~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~ 449 (470)
-+..+|++. ++..+++++|..-. +++| +...|..++..|.+.|+++.|..
T Consensus 1319 ELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1319 ELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 787777764 45556666665443 2332 56789999999999999999884
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-15 Score=143.17 Aligned_cols=345 Identities=10% Similarity=-0.026 Sum_probs=159.7
Q ss_pred CCCCccccCCh---hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 77 SGEGDITTITP---NEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNK-----HYDTVLSLFKRLNSTGLFPDLYTYNIL 148 (470)
Q Consensus 77 ~~~~~~~~~~~---~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~m~~~~~~~~~~~~~~l 148 (470)
.|..+...|+. ++|+..|+...+. ++.++..+...+...+ ++++|+..|++..+.|. + ..+..|
T Consensus 41 Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~L 112 (452)
T 3e4b_A 41 LADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE-G--NTLIPL 112 (452)
T ss_dssp CC---------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-S--SCHHHH
T ss_pred HHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHH
Confidence 33344444555 5666666655542 2334444444333333 55566666666655542 2 244455
Q ss_pred HHHHHhcCCcc---hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 036577 149 INCFCKMGRVS---PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRT 225 (470)
Q Consensus 149 i~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 225 (470)
...|...+..+ ++.+.+......| +...+..|...|...+.++++......+.+.-...+...+..+...|...
T Consensus 113 g~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~ 189 (452)
T 3e4b_A 113 AMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKK 189 (452)
T ss_dssp HHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555444322 2333344333333 23344455555555554333333322222111122333566666666666
Q ss_pred C---ChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhC----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 036577 226 G---HTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKE----GFVDKAKELFLKMKDENINPNVVTYNSLIHG- 297 (470)
Q Consensus 226 g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~- 297 (470)
| +.++|++.|++..+.+ +++...+..+...|... +++++|.++|++.. . -+...+..+...
T Consensus 190 g~~~~~~~A~~~~~~aa~~g-------~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~ 258 (452)
T 3e4b_A 190 QQPEQQAELLKQMEAGVSRG-------TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLL 258 (452)
T ss_dssp TCHHHHHHHHHHHHHHHHTT-------CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHH
Confidence 6 6666666666666655 44555445555555443 46666666666655 2 234444445444
Q ss_pred H--HccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 036577 298 F--CYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG-----KMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL 370 (470)
Q Consensus 298 ~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (470)
+ ...+++++|...|++..+.| +...+..+...|. .| ++++|...|++.. . -+...+..|...|..
T Consensus 259 ~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 259 YDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRR 330 (452)
T ss_dssp HHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHT
T ss_pred HhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHC
Confidence 3 34566666666666666554 4445555555554 33 6666666666655 2 244555555555544
Q ss_pred ----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 036577 371 ----TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH 442 (470)
Q Consensus 371 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (470)
..+.++|...|++..+.| +......|..+|.. ..+.++|..+|+...+.|.. +.......+......+
T Consensus 331 G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~ 406 (452)
T 3e4b_A 331 GYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPA 406 (452)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHH
T ss_pred CCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHH
Confidence 236666666666666554 23344455555543 34566666666666655422 2222222222222334
Q ss_pred CHHHHHHHHHHHH
Q 036577 443 QVERAFKLFDEMR 455 (470)
Q Consensus 443 ~~~~A~~~~~~m~ 455 (470)
+.++|.++.++..
T Consensus 407 ~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 407 QRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.8e-14 Score=124.01 Aligned_cols=223 Identities=11% Similarity=-0.028 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCcccCC
Q 036577 176 DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR----TGHTIVALNLFEEMANGNGEIGVVCEP 251 (470)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (470)
+..++..+...|...|++++|++.|++..+. .+...+..+...|.. .+++++|++.|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 4455666666666666666666666666652 344555666666666 666666666666665533
Q ss_pred CHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCH
Q 036577 252 NTVTYTTIIDGLCK----EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY----ANDWNEAKCLLIEMMDQGVQPNV 323 (470)
Q Consensus 252 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 323 (470)
+...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +.
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 45556666666666 666666666666666543 45556666666665 666666666666666544 34
Q ss_pred hHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHH
Q 036577 324 VTFNVIMDELCK----NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESNRCMHDVFS 395 (470)
Q Consensus 324 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 395 (470)
..+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 220 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 220 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHH
Confidence 445555555555 566666666666665543 34455555555655 566666666666655543 2445
Q ss_pred HHHHHHHHHH----cCChhHHHHHHHHHHHC
Q 036577 396 YSILINGYCK----NKEIEGALSLYSEMLSK 422 (470)
Q Consensus 396 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 422 (470)
+..+..+|.. .+++++|.+.|++..+.
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5555555555 56666666666665554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-15 Score=136.95 Aligned_cols=244 Identities=9% Similarity=-0.039 Sum_probs=193.6
Q ss_pred ccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 75 KSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKH-YDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (470)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 153 (470)
...+..+...|++++|+..|+.++...|. +..+|+.+..++...|+ +++|+..|+++++.. +.+...|..+..++.
T Consensus 101 ~~lg~~~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 101 DYFRAVLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 33344455678899999999999999887 88999999999999996 999999999998875 667889999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh-cCChHHH-
Q 036577 154 KMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR-TGHTIVA- 231 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~a- 231 (470)
..|++++|+..|+++++.. +.+..+|..+..++...|++++|+..|+++.+.. +.+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 9999999999999999874 5578899999999999999999999999998864 3467888889888888 6665777
Q ss_pred ----HHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---
Q 036577 232 ----LNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEG--FVDKAKELFLKMKDENINPNVVTYNSLIHGFCYAN--- 302 (470)
Q Consensus 232 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--- 302 (470)
++.|++..... +.+...|..+..++.+.| ++++|.+.+.++ +. .+.+...+..+..+|.+.|
T Consensus 256 ~~~el~~~~~Al~l~-------P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 256 LEREVQYTLEMIKLV-------PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp HHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 58888888876 567788888888888877 588888888887 33 3446777888888887764
Q ss_pred ------CHHHHHHHHHHH-HHCCCCCCHhHHHHHHHHH
Q 036577 303 ------DWNEAKCLLIEM-MDQGVQPNVVTFNVIMDEL 333 (470)
Q Consensus 303 ------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 333 (470)
..++|+.+++++ .+.. +.....|..+...+
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 257888888887 5542 33344555554444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.9e-15 Score=129.83 Aligned_cols=127 Identities=10% Similarity=0.150 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 215 YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSL 294 (470)
Q Consensus 215 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 294 (470)
|..+...+...|++++|++.|++..... +.+..++..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l 148 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYEL 148 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHH
Confidence 3344444444444444444444444432 2233344444444444444444444444444331 1233333333
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC---HHHHHHHHHHHH
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK---MDEASRLLDLMI 350 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~ 350 (470)
...+...+++++|...|+++.+.. +.+...+..+..++...|+ +++|...++++.
T Consensus 149 ~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 149 GQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 312222224444444444444332 2223333334444444443 344444444433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-13 Score=137.91 Aligned_cols=307 Identities=13% Similarity=0.137 Sum_probs=239.4
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGF 162 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 162 (470)
..+++++|.++.+++ .++.+|..+..++.+.|++++|++.|.+. .|...|..++.++.+.|++++|.
T Consensus 1088 ~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHH
Confidence 345677777777655 36889999999999999999999999663 57888999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 163 VVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
+.+....+.. ++....+.++.+|++.+++++.... .+ .++...|..+...|...|++++|..+|...
T Consensus 1155 eyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---- 1221 (1630)
T 1xi4_A 1155 KYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 1221 (1630)
T ss_pred HHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Confidence 9999887764 3444445699999999998864443 22 256677888999999999999999999985
Q ss_pred CCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 036577 243 GEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN 322 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 322 (470)
..|..+..++.+.|++++|.+.+++.. +..+|..+..+|...|++..|......+ ..+
T Consensus 1222 -----------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~ 1279 (1630)
T 1xi4_A 1222 -----------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 1279 (1630)
T ss_pred -----------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcC
Confidence 268899999999999999999998773 6689999999999999999998876643 446
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC--CCHHHHHHHHHHHHHCCCCC------CHH
Q 036577 323 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT--GRVNRAKELFVSMESNRCMH------DVF 394 (470)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~ 394 (470)
...+..++..|.+.|.+++|+.+++...... +-....|+-+...|++. ++..++.++|..-.. +++ +..
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~ 1356 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAH 1356 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHH
Confidence 6778899999999999999999999888765 33566777777776654 556666666654322 222 677
Q ss_pred HHHHHHHHHHHcCChhHHHHH-------------HHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 036577 395 SYSILINGYCKNKEIEGALSL-------------YSEMLSKGIKPDVVIYNTLFIGLFEIH 442 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (470)
.|..++..|.+.|+++.|... |++.+.+ ..|...|...+.-|...+
T Consensus 1357 lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHHhhC
Confidence 899999999999999999832 2222222 336666766666666555
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-13 Score=121.10 Aligned_cols=222 Identities=13% Similarity=-0.004 Sum_probs=122.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCC
Q 036577 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELFLKMKDENINPN 287 (470)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 287 (470)
..++..+...+...|++++|++.|++..+.+ +...+..+...+.. .+++++|.+.|++..+.+ +
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~ 73 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---Y 73 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---C
Confidence 3444555555555566666666665555422 23445555555555 566666666665555543 4
Q ss_pred HHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHh
Q 036577 288 VVTYNSLIHGFCY----ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASRLLDLMIQIGVRPNAF 359 (470)
Q Consensus 288 ~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 359 (470)
...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +..
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~ 147 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGD 147 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHH
Confidence 4555555555555 556666666665555543 44455555555555 556666666666555543 344
Q ss_pred HHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHH
Q 036577 360 VYNTLMDGFCL----TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPDVVIY 431 (470)
Q Consensus 360 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~ 431 (470)
.+..+...|.. .+++++|...|++..+.+ +...+..+..+|.. .+++++|+..|++..+.+ +...+
T Consensus 148 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 221 (273)
T 1ouv_A 148 GCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGC 221 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHH
Confidence 45555555555 556666666665555543 34555555555555 556666666666555542 24444
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 036577 432 NTLFIGLFE----IHQVERAFKLFDEMRRD 457 (470)
Q Consensus 432 ~~l~~~~~~----~g~~~~A~~~~~~m~~~ 457 (470)
..+...|.. .|++++|.+++++..+.
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 555555555 55566666666555553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-14 Score=133.33 Aligned_cols=252 Identities=11% Similarity=0.044 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 036577 142 LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESR-IMEAAALFTKLKAFGCEPNVITYSTLIN 220 (470)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 220 (470)
...|..+..++...|++++|++.++++++.. +.+..+|+.+..++...|+ +++|+..|+++.... +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3455555555666666666666666665543 3345555556666666664 666666666555542 223445555555
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 036577 221 GLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY 300 (470)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 300 (470)
++...|++++|+..|+++...+ +.+...|..+..++.+.|++++|+..++++.+.. +-+...|+.+..++..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 5555555555555555555544 3445555555555555555555555555555432 1234444444444444
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC--CHHHH
Q 036577 301 -ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG--RVNRA 377 (470)
Q Consensus 301 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A 377 (470)
.|..++|. .+.++..+++.++..+. +...|..+...+...| ++++|
T Consensus 247 l~~~~~eA~------------------------------~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a 295 (382)
T 2h6f_A 247 TTGYNDRAV------------------------------LEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNL 295 (382)
T ss_dssp TTCSCSHHH------------------------------HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHH
T ss_pred hcCcchHHH------------------------------HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHH
Confidence 23323331 01113555555555433 4555666666666555 46666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---------ChhHHHHHHHHH-HHCCCCCC-HhHHHHHHHHH
Q 036577 378 KELFVSMESNRCMHDVFSYSILINGYCKNK---------EIEGALSLYSEM-LSKGIKPD-VVIYNTLFIGL 438 (470)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~~~p~-~~~~~~l~~~~ 438 (470)
.+.+..+ +. .+.+...+..++.+|.+.| ..++|+++++++ .+. .|. ...|..+...+
T Consensus 296 ~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 296 LNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred HHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 6666655 22 2335566666666666653 246677777666 433 333 23444444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-14 Score=123.69 Aligned_cols=201 Identities=13% Similarity=-0.030 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKG 186 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (470)
+..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3445555556666666666666666655543 3345555555555555555555655555555442 2344555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh
Q 036577 187 LCAESRIMEAAALFTKLKAFGCEP-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK 265 (470)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (470)
|...|++++|.+.++++...+..| +...+..+...+...|++++|.+.++++.... +.+...+..+...+..
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-------RNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHH
Confidence 555566666666555555421112 23444555555555555555555555555443 3344555555555555
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 266 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
.|++++|...++.+.... +.+...+..+...+...|++++|...++++.+.
T Consensus 188 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555555555554432 234444555555555555555555555555444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-14 Score=125.08 Aligned_cols=208 Identities=15% Similarity=0.027 Sum_probs=179.8
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 036577 253 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDE 332 (470)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (470)
...+..+...+...|++++|.+.|+++.... +.+...+..+...|...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5778889999999999999999999998763 3478889999999999999999999999998875 4577889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhH
Q 036577 333 LCKNGKMDEASRLLDLMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEG 411 (470)
Q Consensus 333 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 411 (470)
+...|++++|...++++.+.+..| +...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998832333 56788889999999999999999999998864 4478899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhh
Q 036577 412 ALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTY 466 (470)
Q Consensus 412 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 466 (470)
|...++++.+.. +.+...+..+...+...|++++|.++++++.+ ..|+...+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~ 245 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCHHH
Confidence 999999998753 34667888889999999999999999999987 45554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-15 Score=133.82 Aligned_cols=246 Identities=11% Similarity=-0.002 Sum_probs=161.3
Q ss_pred cCCHHHHHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhC
Q 036577 190 ESRIMEAAALFTKLKAFGC---EPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKE 266 (470)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 266 (470)
.|++++|+..|+++.+... +.+..++..+...+...|++++|...|+++.... +.+..++..+..++...
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHc
Confidence 4567777777777765421 1134556666777777777777777777777654 44566777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 036577 267 GFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 346 (470)
Q Consensus 267 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 346 (470)
|++++|.+.|+++.... +.+...+..+..+|...|++++|...++++.+.. |+.......+..+...|++++|...+
T Consensus 91 ~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 77777777777776642 2345667777777777777777777777777653 33333333444456668888888888
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 036577 347 DLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCM---HDVFSYSILINGYCKNKEIEGALSLYSEMLSKG 423 (470)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 423 (470)
........ ++...+ .++..+...++.++|...++........ .+...|..+..+|...|++++|...|+++++.
T Consensus 168 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 244 (275)
T 1xnf_A 168 KQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN- 244 (275)
T ss_dssp HHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 77776533 233333 3666677777788888888776554211 02567888888888999999999999988865
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 036577 424 IKPDVVIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
.|+. +.....++...|++++|++.+
T Consensus 245 -~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 -NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred -Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 3432 233355677778888887765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-14 Score=121.29 Aligned_cols=212 Identities=8% Similarity=-0.066 Sum_probs=181.0
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 036577 250 EPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVI 329 (470)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 329 (470)
+.+...+..+...+...|++++|.+.++.+.... +.+...+..+...|...|++++|...++++.+.. +.+...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 4567788999999999999999999999988763 3468889999999999999999999999998875 5577889999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036577 330 MDELCKN-GKMDEASRLLDLMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNK 407 (470)
Q Consensus 330 ~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 407 (470)
...+... |++++|...++++.+.+..| +...+..++..+...|++++|...++++.+.. +.+...+..++.++...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 9999999 99999999999999832233 36788899999999999999999999998864 446889999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhh
Q 036577 408 EIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWTY 466 (470)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 466 (470)
++++|...++++.+.....+...+..+...+...|+.++|..+++.+.+ ..|+...+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~ 218 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEEL 218 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHH
Confidence 9999999999998764324667788888888999999999999999986 45655443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=9.6e-15 Score=126.48 Aligned_cols=201 Identities=13% Similarity=0.124 Sum_probs=117.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH
Q 036577 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT 290 (470)
Q Consensus 211 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 290 (470)
....|..+...+...|++++|...|+++.... +.+...+..+...+...|++++|.+.++++.... +.+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 93 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-------KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATA 93 (243)
T ss_dssp --------------------CCTTHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHH
Confidence 34445555556666666666666666666543 4455666666666666666666666666665542 235556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 036577 291 YNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL 370 (470)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (470)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..++..+..
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHH
Confidence 6666666666677777777666666553 345556666666677777777777777776665432 55666667777777
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 371 TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.|++++|...++++.+.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 172 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777777777766543 335666777777777777777777777777654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-14 Score=121.13 Aligned_cols=203 Identities=11% Similarity=-0.038 Sum_probs=121.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
++..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45666777777777777777777777776653 4456666666667777777777777776666543 335556666666
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHH
Q 036577 186 GLCAE-SRIMEAAALFTKLKAFGCEP-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGL 263 (470)
Q Consensus 186 ~~~~~-g~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 263 (470)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|+..++++.... +.+...+..+..++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-------PQFPPAFKELARTK 157 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCchHHHHHHHHH
Confidence 66666 66666666666666521112 23455555666666666666666666665543 33455555666666
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 264 CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
.+.|++++|.+.++.+.......+...+..+...+...|+.+++...++.+.+.
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 666666666666665554321134444555555555555555555555555443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-15 Score=127.62 Aligned_cols=198 Identities=12% Similarity=0.008 Sum_probs=135.4
Q ss_pred HhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 73 RFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152 (470)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 152 (470)
.+...|..+...|++++|+..|+.+++..|. +..++..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKE--DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -----------------CCTTHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 3445566667778888888888888887765 67788888888888888888888888887764 45677777788888
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 036577 153 CKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVAL 232 (470)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~ 232 (470)
...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888877754 4466677777777778888888888887776653 235566777777777777777777
Q ss_pred HHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 036577 233 NLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 282 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (470)
+.++++.... +.+..++..+..++...|++++|.+.++++.+.
T Consensus 180 ~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTEQD-------PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777654 445667777777777777777777777777664
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.4e-14 Score=133.37 Aligned_cols=338 Identities=11% Similarity=-0.002 Sum_probs=232.1
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHY---DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG-- 156 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-- 156 (470)
...|++++|++.|+.+.+.+ ++.++..+...+...|++ ++|...|++..+. +...+..+...+...+
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC--C
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCC
Confidence 34678999999999998764 344566677777778888 9999999998864 5667777777666665
Q ss_pred ---CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 036577 157 ---RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIM---EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIV 230 (470)
Q Consensus 157 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 230 (470)
+.++|...|++..+.|.. + .+..|...|...+..+ ++.+.+.+....| +...+..+...|...+.+++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 678999999999997732 3 6667888887766544 3455555555543 56778888888888885554
Q ss_pred HH----HHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc--
Q 036577 231 AL----NLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK---EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYA-- 301 (470)
Q Consensus 231 a~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 301 (470)
+. .+++.... .++..+..+...|.. ..+.++|++.|++..+.| +++...+..+...|...
T Consensus 160 ~~~~a~~~~~~a~~----------~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 160 HLDDVERICKAALN----------TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATL 228 (452)
T ss_dssp GHHHHHHHHHHHTT----------TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGG
T ss_pred CHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCC
Confidence 44 44444432 223366667666653 357999999999999987 34666667777777655
Q ss_pred --CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC----
Q 036577 302 --NDWNEAKCLLIEMMDQGVQPNVVTFNVIMDE-L--CKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG---- 372 (470)
Q Consensus 302 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 372 (470)
+++++|...|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..|...|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp SSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence 79999999999987 43 45566666666 4 56899999999999999876 6777888888887 55
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCC
Q 036577 373 -RVNRAKELFVSMESNRCMHDVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE----IHQ 443 (470)
Q Consensus 373 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 443 (470)
+.++|...|++.. .+ +...+..+...|.. ..++++|..+|++..+.|. ......|...|.. ..+
T Consensus 301 ~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp CCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCC
T ss_pred CCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCC
Confidence 9999999999887 44 77888888888876 3499999999999998763 4455566666664 458
Q ss_pred HHHHHHHHHHHHHcCC
Q 036577 444 VERAFKLFDEMRRDGV 459 (470)
Q Consensus 444 ~~~A~~~~~~m~~~g~ 459 (470)
.++|..+|++..+.|.
T Consensus 374 ~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 9999999999988774
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=135.49 Aligned_cols=304 Identities=11% Similarity=-0.005 Sum_probs=214.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhC----CCCC-
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD----LYTYNILINCFCKMGRVSPGFVVLGRILRS----CFTP- 175 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~- 175 (470)
.....+......+...|++++|+..|+++.+.+ +.+ ...+..+...+...|++++|...+++.+.. +..+
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 456677788888899999999999999988764 334 357788888999999999999998887542 2111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCC--------------------hHH
Q 036577 176 DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCE-PN----VITYSTLINGLCRTGH--------------------TIV 230 (470)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~g~--------------------~~~ 230 (470)
...++..+...|...|++++|...+++..+.... .+ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2557888889999999999999999887653100 11 3477888889999999 999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCHH
Q 036577 231 ALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI-NPN----VVTYNSLIHGFCYANDWN 305 (470)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~ 305 (470)
|.+.+++........+. .+....++..+...+...|++++|.+.+++...... .++ ..++..+...|...|+++
T Consensus 166 A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 99998887653211000 122345788888999999999999999988765310 112 236777888888899999
Q ss_pred HHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHcCCCHH
Q 036577 306 EAKCLLIEMMDQ----GVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PN----AFVYNTLMDGFCLTGRVN 375 (470)
Q Consensus 306 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~ 375 (470)
+|...+++..+. +..+ ...++..+...|...|++++|...+++..+.... .+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999888887643 1111 1456777788888888888888888887654211 11 456777788888888888
Q ss_pred HHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCChh
Q 036577 376 RAKELFVSMESN----RCM-HDVFSYSILINGYCKNKEIE 410 (470)
Q Consensus 376 ~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~ 410 (470)
+|...+++..+. +.. ....++..+...+...|+..
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 888888776542 111 13455666677777666653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-14 Score=136.64 Aligned_cols=272 Identities=15% Similarity=0.045 Sum_probs=151.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----chHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhH
Q 036577 182 SLIKGLCAESRIMEAAALFTKLKAFGCEPNV-----ITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTY 256 (470)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (470)
.+...+...|++++|+..|+++.+.+ |+. ..+..+...|...|++++|+..+++........+. .+....++
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 129 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-RLGEAKSS 129 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-chHHHHHH
Confidence 34444555555555555555555432 221 23444555555555555555555554432100000 12233455
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHccCC-----------------HHHHHHHHHHH
Q 036577 257 TTIIDGLCKEGFVDKAKELFLKMKDE----N-INPNVVTYNSLIHGFCYAND-----------------WNEAKCLLIEM 314 (470)
Q Consensus 257 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~~ 314 (470)
..+...|...|++++|...+++.... + .+....++..+...|...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 55666666666666666666655432 0 11123355556666666666 66666666655
Q ss_pred HHC----CCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 036577 315 MDQ----GVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PN----AFVYNTLMDGFCLTGRVNRAKELFVSM 384 (470)
Q Consensus 315 ~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (470)
.+. +.. .....+..+...+...|++++|...+++..+.... .+ ...+..+...|...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 432 111 12235666666777777777777777776553111 01 225666777777777777777777766
Q ss_pred HHCCC---C--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 385 ESNRC---M--HDVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIK-PDVVIYNTLFIGLFEIHQVERAFKLFDEM 454 (470)
Q Consensus 385 ~~~~~---~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (470)
..... . ....++..+..+|...|++++|...+++.++. +.. ....++..+...+...|++++|.+++++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 54210 0 12456677777777788888888777776643 111 11336666777777788888888877777
Q ss_pred HH
Q 036577 455 RR 456 (470)
Q Consensus 455 ~~ 456 (470)
.+
T Consensus 370 l~ 371 (411)
T 4a1s_A 370 LQ 371 (411)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-14 Score=134.59 Aligned_cols=283 Identities=14% Similarity=0.054 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL----YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNS 182 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (470)
...+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...+++.++..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------- 116 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA---------- 116 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----------
Confidence 3444555666666777777777777666543 2222 244455555555555555555555543310
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHH
Q 036577 183 LIKGLCAESRIMEAAALFTKLKAFG-CEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIID 261 (470)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 261 (470)
...+ .+....++..+...|...|++++|...+++........+. .+....++..+..
T Consensus 117 ---------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~ 174 (411)
T 4a1s_A 117 ---------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-RLSEGRALYNLGN 174 (411)
T ss_dssp ---------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH
T ss_pred ---------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHH
Confidence 0000 0112334445555555566666666655555443100000 1223457778888
Q ss_pred HHHhCCC-----------------HHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 036577 262 GLCKEGF-----------------VDKAKELFLKMKDE----N-INPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGV 319 (470)
Q Consensus 262 ~~~~~g~-----------------~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 319 (470)
.|...|+ +++|.+.+++.... + ......++..+...|...|++++|...+++..+...
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 8888888 88998888876542 1 112345778888999999999999999998876421
Q ss_pred C-CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-
Q 036577 320 Q-PN----VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-----PNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR- 388 (470)
Q Consensus 320 ~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 388 (470)
. .+ ...+..+...|...|++++|...+++..+.... ....++..+...+...|++++|...+++.....
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 0 11 237788889999999999999999988765221 125678889999999999999999999876531
Q ss_pred ----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 389 ----CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 389 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
......++..+..+|...|++++|...+++..+.
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0113457888999999999999999999998864
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-14 Score=133.06 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCc
Q 036577 141 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD----AVTFNSLIKGLCAESRIMEAAALFTKLKAF----GCEPNV 212 (470)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~~~ 212 (470)
....+......+...|++++|...++++++.+ +.+ ..++..+...|...|++++|...+++.... +..+..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34444555555555666666666665555542 112 234555555555555555555555554322 101111
Q ss_pred c-hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036577 213 I-TYSTLINGLCRTGHTIVALNLFEEMANG 241 (470)
Q Consensus 213 ~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 241 (470)
. ++..+...+...|++++|...+++....
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 116 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDI 116 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 2333444555555555555555555544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.2e-13 Score=120.08 Aligned_cols=219 Identities=13% Similarity=0.059 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 88 NEAFCIFDYMLNMRPSPPPVSSFNILFGCLAK-------NKHY-------DTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (470)
Q Consensus 88 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 153 (470)
++|+.+|+.++...|. ++..|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 7899999999998886 89999998888764 4765 778888887776311445667777777777
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH-hcCChHHH
Q 036577 154 KMGRVSPGFVVLGRILRSCFTPDAV-TFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLC-RTGHTIVA 231 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~g~~~~a 231 (470)
..|++++|.++|+++++.. +.+.. +|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|+.++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777777642 11233 67777777777777777777777776643 223333332222211 25777777
Q ss_pred HHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHccCCHHHHH
Q 036577 232 LNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN-INP--NVVTYNSLIHGFCYANDWNEAK 308 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~ 308 (470)
.++|++..+.. +.+...|..++..+.+.|++++|..+|++..... ++| ....|..++....+.|+.+.|.
T Consensus 189 ~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 189 FKIFELGLKKY-------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777766654 3456666666666666777777777777666642 232 3455666666666666666666
Q ss_pred HHHHHHHHC
Q 036577 309 CLLIEMMDQ 317 (470)
Q Consensus 309 ~~~~~~~~~ 317 (470)
.+++++.+.
T Consensus 262 ~~~~~a~~~ 270 (308)
T 2ond_A 262 KVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-13 Score=127.95 Aligned_cols=301 Identities=9% Similarity=-0.062 Sum_probs=167.9
Q ss_pred HHhcCChHHHHHHHHHHHhC--CCCCCH--HHHHHHHHHH--HhcCCcchHH-----------HHHHHHHhCCCCCC---
Q 036577 117 LAKNKHYDTVLSLFKRLNST--GLFPDL--YTYNILINCF--CKMGRVSPGF-----------VVLGRILRSCFTPD--- 176 (470)
Q Consensus 117 ~~~~~~~~~A~~~~~~m~~~--~~~~~~--~~~~~li~~~--~~~g~~~~a~-----------~~~~~~~~~~~~~~--- 176 (470)
+.+.+++++|..+++++.+. .+..|. ..|..++..- .-.++++.+. +.++.+.....+.+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 34578888888888887553 222333 2333333221 1223333333 66666544211111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccC
Q 036577 177 -AVTFNSLIKGLCAESRIMEAAALFTKLKAF----GCEP-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCE 250 (470)
Q Consensus 177 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (470)
...+......+...|++++|...|++..+. +-++ ...++..+...|...|++++|+..+++........+....
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 112223566778899999999999998764 1111 3467888999999999999999999998765422110011
Q ss_pred CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CC-C
Q 036577 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE----NI-NPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----GV-Q 320 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~ 320 (470)
....++..+..+|...|++++|.+.+++..+. +. .....++..+..+|...|++++|...+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 22456778888888888888888888877643 10 011235666666677777777777777666551 21 2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHhHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCC-C
Q 036577 321 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG----VRPNAFVYNTLMDGFCLTGR---VNRAKELFVSMESNRCMH-D 392 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~ 392 (470)
....++..+...+.+.|++++|...+++..+.. -+.....+..+...+...|+ +++|..+++.. +..+ .
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~ 338 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL 338 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence 234455666666666666666666666654431 11111223444455555555 44444444332 1111 2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 036577 393 VFSYSILINGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 393 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (470)
...+..+...|...|++++|...+++..
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2234444445555555555555554443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-13 Score=112.11 Aligned_cols=174 Identities=14% Similarity=0.076 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 366 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (470)
+..+|..+...|...|++++|+..|++..+.. +-+...+..+..+|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 44555566666666666666666666665553 344555666666666666666666666666555433 4555555566
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 036577 367 GFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVER 446 (470)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 446 (470)
.+...++++.|...+.+..... +.+...+..+..+|.+.|++++|++.|++.++... .+...|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 6666666666666666655542 33556666666666666666666666666665422 244566666666666666666
Q ss_pred HHHHHHHHHHcCCCCChhhh
Q 036577 447 AFKLFDEMRRDGVAADTWTY 466 (470)
Q Consensus 447 A~~~~~~m~~~g~~p~~~~~ 466 (470)
|.+.|++..+ +.|+...|
T Consensus 160 A~~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKKAKY 177 (184)
T ss_dssp HHHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHHHHh--CCccCHHH
Confidence 6666666665 45554433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-14 Score=127.84 Aligned_cols=274 Identities=15% Similarity=0.066 Sum_probs=176.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHh
Q 036577 180 FNSLIKGLCAESRIMEAAALFTKLKAFGCEPN-----VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTV 254 (470)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (470)
+......+...|++++|...|+++.+.. |+ ...+..+...+...|++++|.+.+++........+. .+....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~ 84 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-QLGEAK 84 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc-cHHHHH
Confidence 3344555666666666666666666542 22 244555666666666666666666665432100000 112245
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC--------------------HHHHHH
Q 036577 255 TYTTIIDGLCKEGFVDKAKELFLKMKDENI-NPN----VVTYNSLIHGFCYAND--------------------WNEAKC 309 (470)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~--------------------~~~a~~ 309 (470)
++..+...+...|++++|...+++...... .++ ..++..+...|...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 566667777777777777777766544200 011 3356666777777777 777777
Q ss_pred HHHHHHHC----CC-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C----CHhHHHHHHHHHHcCCCHHHHHH
Q 036577 310 LLIEMMDQ----GV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-P----NAFVYNTLMDGFCLTGRVNRAKE 379 (470)
Q Consensus 310 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~ 379 (470)
.+++.... +. +.....+..+...+...|++++|...+++..+.... + ...++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77665432 11 112346777778888888998888888887654111 1 12367788888889999999999
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHhcCCHHHHHH
Q 036577 380 LFVSMESN----RCMH-DVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIK-PDVVIYNTLFIGLFEIHQVERAFK 449 (470)
Q Consensus 380 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~ 449 (470)
.+++..+. +..+ ...++..+...|...|++++|...+++..+. +.. ....++..+...+...|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88877642 1011 2567788888999999999999999887653 111 113477788899999999999999
Q ss_pred HHHHHHH
Q 036577 450 LFDEMRR 456 (470)
Q Consensus 450 ~~~~m~~ 456 (470)
++++..+
T Consensus 325 ~~~~a~~ 331 (338)
T 3ro2_A 325 FAEKHLE 331 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999886
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-12 Score=116.59 Aligned_cols=217 Identities=10% Similarity=0.022 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHH-------hCCCH-------HHHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 229 IVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC-------KEGFV-------DKAKELFLKMKDENINPNVVTYNSL 294 (470)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l 294 (470)
++|..+|+++.... +.+...|..++..+. +.|++ ++|..+|++....-.+.+...|..+
T Consensus 33 ~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~ 105 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 67889999998875 667888888888776 35886 8999999999983123466789999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC-Hh-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-cC
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGVQPN-VV-TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFC-LT 371 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 371 (470)
+..+.+.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.... +...|...+.... ..
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTS
T ss_pred HHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHc
Confidence 99999999999999999999986 443 33 7999999999999999999999999987543 4555654444432 37
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCC--CHhHHHHHHHHHHhcCCHHHHH
Q 036577 372 GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKG-IKP--DVVIYNTLFIGLFEIHQVERAF 448 (470)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~ 448 (470)
|+.++|..+|++.++.. +.+...|..++..+.+.|++++|..+|++.++.. +.| ....|..++....+.|+.++|.
T Consensus 183 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998763 4478999999999999999999999999999863 455 3568999999999999999999
Q ss_pred HHHHHHHH
Q 036577 449 KLFDEMRR 456 (470)
Q Consensus 449 ~~~~~m~~ 456 (470)
.+++++.+
T Consensus 262 ~~~~~a~~ 269 (308)
T 2ond_A 262 KVEKRRFT 269 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.7e-14 Score=127.24 Aligned_cols=281 Identities=14% Similarity=0.051 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhC----CC-CCCHH
Q 036577 108 SSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD----LYTYNILINCFCKMGRVSPGFVVLGRILRS----CF-TPDAV 178 (470)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~ 178 (470)
..+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +. +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 344555666777777777777777776653 223 345667777777777777777777765542 11 11245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCC--------------------hHHHHH
Q 036577 179 TFNSLIKGLCAESRIMEAAALFTKLKAFGCE-PN----VITYSTLINGLCRTGH--------------------TIVALN 233 (470)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~g~--------------------~~~a~~ 233 (470)
++..+...|...|++++|...+++..+.... .+ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 6777888888888888888888876543110 11 3367777788888888 788888
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCCHHHHH
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN-----INPNVVTYNSLIHGFCYANDWNEAK 308 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~ 308 (470)
.+++.......... .......+..+...+...|++++|.+.+++..... ......++..+...+...|++++|.
T Consensus 165 ~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 165 LYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77776543110000 11223456667777777777777777777665420 0001124444445555555555555
Q ss_pred HHHHHHHHCCC-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 309 CLLIEMMDQGV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 309 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
..+++..+... ..+. .....++..+...+...|++++|...+++..+.
T Consensus 244 ~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDR-------------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcch-------------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 55554432100 0000 000234444555555555555555555544331
Q ss_pred ----C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 388 ----R-CMHDVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 388 ----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+ ......++..+..+|...|++++|...+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 0 000133455566666666666666666666654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-13 Score=125.36 Aligned_cols=299 Identities=8% Similarity=-0.010 Sum_probs=212.6
Q ss_pred HHhcCCcchHHHHHHHHHhC--CC--CCCHHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHhcCCCCCcch
Q 036577 152 FCKMGRVSPGFVVLGRILRS--CF--TPDAVTFNSLIKG--LCAESRIMEAA-----------ALFTKLKAFGCEPNVIT 214 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~g~~~~a~-----------~~~~~~~~~g~~~~~~~ 214 (470)
+.+.+++++|..+++++.+. .. .++...|..++.. ....+.++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 45789999999999998663 22 2333444444432 22234444444 6666665431 11111
Q ss_pred ------HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC--CC--
Q 036577 215 ------YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE--NI-- 284 (470)
Q Consensus 215 ------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-- 284 (470)
+......+...|++++|+..+++........+. ......++..+...|...|++++|...+++..+. ..
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKD-RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 223566778899999999999999875221000 0114567899999999999999999999988653 11
Q ss_pred --CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C
Q 036577 285 --NPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----GVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQI----G 353 (470)
Q Consensus 285 --~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~ 353 (470)
.....++..+...|...|++++|...+++..+. +..+ ...++..+..+|...|++++|...+++..+. +
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 112457888899999999999999999988753 1111 1247888999999999999999999998873 2
Q ss_pred C-CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCC
Q 036577 354 V-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN----RCMHDVFSYSILINGYCKNKE---IEGALSLYSEMLSKGIK 425 (470)
Q Consensus 354 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~ 425 (470)
. +....++..+...+.+.|++++|...+++..+. +.+.....+..+...+...|+ +++|+.++++. +..
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~ 335 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLY 335 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCH
Confidence 2 334677889999999999999999999887653 111223346778888888998 77788887766 333
Q ss_pred CC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 426 PD-VVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 426 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
|+ ...+..+...|...|++++|.+++++..+
T Consensus 336 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33 34777888999999999999999999974
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-13 Score=129.96 Aligned_cols=214 Identities=12% Similarity=-0.017 Sum_probs=186.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 036577 227 HTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFV-DKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWN 305 (470)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 305 (470)
.++++++.++...... +.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+..+|...|+++
T Consensus 83 ~~~~al~~l~~~~~~~-------~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-------QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhccC-------chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 4667777888776554 56888999999999999999 99999999998864 346889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC-----
Q 036577 306 EAKCLLIEMMDQGVQPNVVTFNVIMDELCKN---------GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT----- 371 (470)
Q Consensus 306 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 371 (470)
+|...|++..+. .|+...+..+..++... |++++|...++++.+..+. +...|..+..+|...
T Consensus 155 ~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 155 SAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhc
Confidence 999999999987 46678899999999999 9999999999999998654 788999999999988
Q ss_pred ---CCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 036577 372 ---GRVNRAKELFVSMESNRCM---HDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVE 445 (470)
Q Consensus 372 ---g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 445 (470)
|++++|...|++..+.. + .+...|..+..+|...|++++|++.|++..+.... +...+..+..++...|+++
T Consensus 232 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence 99999999999998864 3 48999999999999999999999999999876432 5668888999999999999
Q ss_pred HHHHHHHH
Q 036577 446 RAFKLFDE 453 (470)
Q Consensus 446 ~A~~~~~~ 453 (470)
+|.+.+++
T Consensus 310 eAi~~~~~ 317 (474)
T 4abn_A 310 SLLESKGK 317 (474)
T ss_dssp HHHHHTTT
T ss_pred HHHHHhcc
Confidence 99876544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-13 Score=130.44 Aligned_cols=214 Identities=11% Similarity=0.001 Sum_probs=184.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 036577 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHY-DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVV 164 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 164 (470)
.+++|+..++......+. +...|..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.
T Consensus 83 ~~~~al~~l~~~~~~~~~--~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQV--EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCch--hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 467788888887776654 889999999999999999 99999999998875 56788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc--------CC
Q 036577 165 LGRILRSCFTPDAVTFNSLIKGLCAE---------SRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRT--------GH 227 (470)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--------g~ 227 (470)
|++.++. .|+...+..+...|... |++++|++.|++..+.. +.+...|..+..+|... |+
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 9999987 46678999999999999 99999999999998864 34678899999999988 99
Q ss_pred hHHHHHHHHHHHhcCCCCCcccC---CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 036577 228 TIVALNLFEEMANGNGEIGVVCE---PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDW 304 (470)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 304 (470)
+++|++.|++..... + .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++
T Consensus 237 ~~~A~~~~~~al~~~-------p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-------RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp HHHHHHHHHHHHHHC-------GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-------CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 999999999999865 4 588899999999999999999999999988763 33667788888888888888
Q ss_pred HHHHHHHHH
Q 036577 305 NEAKCLLIE 313 (470)
Q Consensus 305 ~~a~~~~~~ 313 (470)
++|...+.+
T Consensus 309 ~eAi~~~~~ 317 (474)
T 4abn_A 309 TSLLESKGK 317 (474)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHhcc
Confidence 888876543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-11 Score=117.43 Aligned_cols=396 Identities=10% Similarity=0.032 Sum_probs=258.4
Q ss_pred hhHHHHHhhhhccCChhhHHHHHHHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC---hH
Q 036577 48 TTAKLKESLRLTVKDRASLEKFLRERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKH---YD 124 (470)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~ 124 (470)
....+...+.-.+.+......++. ... ..++++.|..+|+.++...|. ....|...+..-.+.++ ++
T Consensus 51 ~i~~lE~~l~~np~d~~~W~~yi~-~~~-------~~~~~~~aR~vyEraL~~fP~--~~~lW~~Yi~~E~~~~~~~~~~ 120 (679)
T 4e6h_A 51 VIGKLNDMIEEQPTDIFLYVKLLK-HHV-------SLKQWKQVYETFDKLHDRFPL--MANIWCMRLSLEFDKMEELDAA 120 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH-HHH-------HTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTC--CCCHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHH-HHH-------hcCcHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhhCCcchHH
Confidence 444556555544444433333322 221 235789999999999998886 88899999999989888 99
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCc--------chHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHh---
Q 036577 125 TVLSLFKRLNSTG-LFPDLYTYNILINCFCKMGRV--------SPGFVVLGRILR-SCF-TP-DAVTFNSLIKGLCA--- 189 (470)
Q Consensus 125 ~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~--- 189 (470)
.+..+|++.+... .+|++..|...+.-..+.++. +...++|+..+. .|. .+ +...|...+.....
T Consensus 121 ~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 121 VIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 9999999998763 138888888888776666654 234477777665 455 44 45788888876543
Q ss_pred ------cCCHHHHHHHHHHHHhcCCCCC--cchHHHHHHHHHh-------------cCChHHHHHHHHHHHhcCCCCCc-
Q 036577 190 ------ESRIMEAAALFTKLKAFGCEPN--VITYSTLINGLCR-------------TGHTIVALNLFEEMANGNGEIGV- 247 (470)
Q Consensus 190 ------~g~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~~~~~~~~- 247 (470)
.++++.+.++|++.+.. |.. ..+|......-.. ..++..|...+.++.........
T Consensus 201 ~~~~eeq~~~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 201 VNKFEEQQRVQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred cCcHHHHhHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 34567788888887752 211 1222111100000 01112222223222111100000
Q ss_pred -----------------------------------------------------------ccCCCHhhHHHHHHHHHhCCC
Q 036577 248 -----------------------------------------------------------VCEPNTVTYTTIIDGLCKEGF 268 (470)
Q Consensus 248 -----------------------------------------------------------~~~~~~~~~~~l~~~~~~~g~ 268 (470)
..+-+...|...+..+...|+
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Confidence 012233444555555566788
Q ss_pred HHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC---------CCC------------CHhHH
Q 036577 269 VDKAK-ELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQG---------VQP------------NVVTF 326 (470)
Q Consensus 269 ~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~------------~~~~~ 326 (470)
.++|. ++|+..... ++.+...|...+....+.|+++.|.++|+.+.+.. ..| ....|
T Consensus 359 ~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 88886 999888764 44566677788888889999999999999887631 013 12367
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 327 NVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT-GRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 327 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|..+|+..++. ++.+...|...+.....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHh
Confidence 777787888899999999999998761122334444444433444 4589999999988876 34577778888888888
Q ss_pred cCChhHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 406 NKEIEGALSLYSEMLSKGIKP--DVVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
.|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+.++.+++.+.
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999998764322 3457888888888899999999999999873
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-12 Score=106.57 Aligned_cols=172 Identities=17% Similarity=0.095 Sum_probs=152.6
Q ss_pred CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIM 330 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 330 (470)
.++.+|..+...|...|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+....... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 367889999999999999999999999998864 3478889999999999999999999999998875 55677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChh
Q 036577 331 DELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIE 410 (470)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 410 (470)
..+...++++.|...+.+..+..+. +...+..+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 8999999999999999999988654 78889999999999999999999999998865 458899999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCH
Q 036577 411 GALSLYSEMLSKGIKPDV 428 (470)
Q Consensus 411 ~A~~~~~~~~~~~~~p~~ 428 (470)
+|++.|++.++. .|+.
T Consensus 159 ~A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHHhC--CccC
Confidence 999999999975 4443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.4e-14 Score=125.28 Aligned_cols=252 Identities=13% Similarity=-0.003 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-Cc
Q 036577 176 DAVTFNSLIKGLCAESRIMEAAALFTKLKAF-------GCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEI-GV 247 (470)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~ 247 (470)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...++++....... +.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566777778888888888888888877653 223345667778888888888888888888877641000 00
Q ss_pred ccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---
Q 036577 248 VCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE------NI-NPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ--- 317 (470)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 317 (470)
..+....++..+...+...|++++|.+.++++.+. +. +.....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 01345677888999999999999999999988753 11 223456777778888888888888888887654
Q ss_pred ---CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 318 ---GVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV-------RPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 318 ---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
+..| ....+..+..++...|++++|...++++.+... .+.......
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------------- 242 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM----------------------- 242 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----------------------
Confidence 1122 234566777777888888888888877765310 000000000
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 387 NRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 387 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
....+..+...+...+.+.+|...++...... ..+..++..+..+|.+.|++++|.+++++..+
T Consensus 243 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 -----HAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----HHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11222333334445556666666666655421 12344666667777777777777777776654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.7e-14 Score=125.95 Aligned_cols=176 Identities=14% Similarity=0.046 Sum_probs=135.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC------C
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNST-------GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS------C 172 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~ 172 (470)
...++..+...+...|++++|+.+|+++.+. ..+....++..+...+...|++++|...++++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4677888888899999999999999888763 22344567888888899999999999988888763 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 036577 173 F-TPDAVTFNSLIKGLCAESRIMEAAALFTKLKAF------GC-EPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGE 244 (470)
Q Consensus 173 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 244 (470)
. +....++..+...|...|++++|...+++..+. +. +.....+..+...+...|++++|+++++++......
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 234567888999999999999999999988764 21 223556788889999999999999999998775100
Q ss_pred C-CcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 036577 245 I-GVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKD 281 (470)
Q Consensus 245 ~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (470)
. +...+....++..+..++...|++++|.+.++++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 000133456788889999999999999999998875
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.8e-12 Score=115.59 Aligned_cols=311 Identities=10% Similarity=-0.039 Sum_probs=181.4
Q ss_pred CHHHHHHHHHHH--HhcCChHHHHHHHHHHHhC--CCCCC--HHHHHHHHHH--HHhcCCcchHH---------HHHHHH
Q 036577 106 PVSSFNILFGCL--AKNKHYDTVLSLFKRLNST--GLFPD--LYTYNILINC--FCKMGRVSPGF---------VVLGRI 168 (470)
Q Consensus 106 ~~~~~~~l~~~~--~~~~~~~~A~~~~~~m~~~--~~~~~--~~~~~~li~~--~~~~g~~~~a~---------~~~~~~ 168 (470)
+..+-+.+-..| ...+++++|..+++++.+. .+..| ...|-.++.. ..-.+....+. +.++.+
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 334444444455 6789999999999987553 22223 3333444332 11223344444 666666
Q ss_pred HhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C----CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 036577 169 LRSCFTPDA----VTFNSLIKGLCAESRIMEAAALFTKLKAFGCE-P----NVITYSTLINGLCRTGHTIVALNLFEEMA 239 (470)
Q Consensus 169 ~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 239 (470)
.....+.+. ..+......+...|++++|+..|++..+.... + ...++..+...|...|++++|+..+++..
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 542211111 12334556677899999999999998754211 1 24567888999999999999999999987
Q ss_pred hcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 036577 240 NGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE----NIN-PNVVTYNSLIHGFCYANDWNEAKCLLIEM 314 (470)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (470)
...............+++.+..+|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|...+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6532110000112456778888899999999999988887652 111 12345666677777777777777777776
Q ss_pred HH-----CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHhHHHHHHHHHHcCCC---HHHHHHHHH
Q 036577 315 MD-----QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR----PNAFVYNTLMDGFCLTGR---VNRAKELFV 382 (470)
Q Consensus 315 ~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 382 (470)
.+ .. +....++..+...+.+.|++++|...+++..+.... .....+..+...+...|+ +.+|...++
T Consensus 249 l~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 249 AKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 65 22 222455666666677777777777777766654211 112234444445555555 455555444
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 036577 383 SMESNRCMH-DVFSYSILINGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 383 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (470)
.. +..+ ....+..+...|...|++++|...|++..
T Consensus 328 ~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 328 KK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 31 1111 22334455555556666666666555554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-10 Score=112.27 Aligned_cols=360 Identities=12% Similarity=0.031 Sum_probs=242.7
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---cchHHH
Q 036577 87 PNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR---VSPGFV 163 (470)
Q Consensus 87 ~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~ 163 (470)
.++-+..|+..+..+|. +...|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.|+ ++.+.+
T Consensus 48 ~~d~i~~lE~~l~~np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 45667788888888886 9999999999999999999999999999987 46778889999998888888 999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-cCC-CCC-cchHHHHHHHHH--------
Q 036577 164 VLGRILRSC-FTPDAVTFNSLIKGLCAESRI--------MEAAALFTKLKA-FGC-EPN-VITYSTLINGLC-------- 223 (470)
Q Consensus 164 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~l~~~~~-------- 223 (470)
+|++.+... .+|++..|...+....+.++. +.+.++|+.... .|. .++ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999999864 148888999888877665553 344577877654 355 444 456777665543
Q ss_pred -hcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh-------------CCCHHHHH----------------
Q 036577 224 -RTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK-------------EGFVDKAK---------------- 273 (470)
Q Consensus 224 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~---------------- 273 (470)
..++.+.+..+|+++.... ...-..+|......-.. ..+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~iP------~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQP------MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSC------CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHhHHHHHHHHHHHHHhCc------cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 2345677888998887532 11111222111100000 01111222
Q ss_pred ---------------------------------------------------HHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 036577 274 ---------------------------------------------------ELFLKMKDENINPNVVTYNSLIHGFCYAN 302 (470)
Q Consensus 274 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 302 (470)
.+|+++... ++-+...|...+..+...|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcC
Confidence 223332222 1223344444455555667
Q ss_pred CHHHHH-HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------CC------------CHhH
Q 036577 303 DWNEAK-CLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV---------RP------------NAFV 360 (470)
Q Consensus 303 ~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~------------~~~~ 360 (470)
+.++|. .+|++..... +.+...|-..+....+.|+++.|..+|+.+..... .| ...+
T Consensus 358 ~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp CCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 777886 8888887653 55666677778888889999999999998876410 13 1346
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 036577 361 YNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN-KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLF 439 (470)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 439 (470)
|...+....+.|+.+.|+.+|.+.++.........|...+..-.+. ++.+.|.++|+..++. .+-+...|...+....
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 7777888788889999999999988751112334444333333444 4589999999998876 3335667778888888
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 036577 440 EIHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~g 458 (470)
..|+.+.|+.+|++.....
T Consensus 516 ~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTS
T ss_pred hCCCHHHHHHHHHHHHHhc
Confidence 8899999999999988743
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-11 Score=114.50 Aligned_cols=313 Identities=9% Similarity=0.002 Sum_probs=217.1
Q ss_pred CCCHHHHHHHHHHH--HhcCCcchHHHHHHHHHhC--CC--CCCHHHHHHHHHH--HHhcCCHHHHH---------HHHH
Q 036577 139 FPDLYTYNILINCF--CKMGRVSPGFVVLGRILRS--CF--TPDAVTFNSLIKG--LCAESRIMEAA---------ALFT 201 (470)
Q Consensus 139 ~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~g~~~~a~---------~~~~ 201 (470)
.|+..+-..+-..| ...+++++|.++++++.+. .. ..+...|-.++.. ....+.+..+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45556666666666 7889999999999988662 22 2334444444443 11122222222 5566
Q ss_pred HHHhcCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHH
Q 036577 202 KLKAFGCEPNV----ITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFL 277 (470)
Q Consensus 202 ~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 277 (470)
.+.....+.+. ..+......+...|++++|+..|++........+. ......++..+...|...|+++.|...++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD-DIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 55432111111 12333455677899999999999999865321100 11235678889999999999999999999
Q ss_pred HHHhC----C-CC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHH
Q 036577 278 KMKDE----N-IN-PNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----GVQP-NVVTFNVIMDELCKNGKMDEASRLL 346 (470)
Q Consensus 278 ~~~~~----~-~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 346 (470)
+..+. + .. ....+++.+..+|...|++++|...+++..+. +..+ ...++..+..+|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 87653 1 11 12457788999999999999999999988753 2111 2346788899999999999999999
Q ss_pred HHHHH-----cCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCC---hhHHHH
Q 036577 347 DLMIQ-----IGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR----CMHDVFSYSILINGYCKNKE---IEGALS 414 (470)
Q Consensus 347 ~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~ 414 (470)
++..+ .... ...++..+...+.+.|++++|...+++..+.. .+.....+..+...+...|+ +++|+.
T Consensus 246 ~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99887 4333 36788899999999999999999999987632 12234456667777777888 778888
Q ss_pred HHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 415 LYSEMLSKGIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 415 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+++. +..|+ ...+..+...|...|++++|.+.|++..+
T Consensus 325 ~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 325 YFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77763 33333 34667788999999999999999999874
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-11 Score=111.00 Aligned_cols=55 Identities=13% Similarity=-0.016 Sum_probs=23.9
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036577 151 CFCKMGRVSPGFVVLGRILRSCFTPDA----VTFNSLIKGLCAESRIMEAAALFTKLKA 205 (470)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 205 (470)
.+...|++++|...+++.+......+. .+++.+...+...|++++|.+.+++...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 81 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 81 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 344455555555555554443211111 1233344444445555555555544443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.4e-12 Score=104.40 Aligned_cols=161 Identities=14% Similarity=0.078 Sum_probs=83.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT 371 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (470)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..++..+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh
Confidence 333444444444444444444443332 223444444455555555555555555555444222 444555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 036577 372 GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555554432 2345555556666666666666666666655542 223455566666666666666666666
Q ss_pred HHHHH
Q 036577 452 DEMRR 456 (470)
Q Consensus 452 ~~m~~ 456 (470)
+++.+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.8e-11 Score=109.84 Aligned_cols=273 Identities=11% Similarity=-0.023 Sum_probs=155.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCcchHHHHHHHHHhCCC-CCC----HHHHHH
Q 036577 112 ILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLY----TYNILINCFCKMGRVSPGFVVLGRILRSCF-TPD----AVTFNS 182 (470)
Q Consensus 112 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ 182 (470)
.....+...|++++|...+++.....-..+.. ++..+...+...|++++|...+++..+... ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445556677777777776665543112221 344555666667777777777666554210 011 233555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc----CCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhh
Q 036577 183 LIKGLCAESRIMEAAALFTKLKAF----GCE--P-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVT 255 (470)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~----g~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (470)
+...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++........+. .....+
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~ 176 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP--QQQLQC 176 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG--GGGHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc--HHHHHH
Confidence 666777778888887777776543 111 1 2234555667777788888888888877665432211 112345
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHHH----HHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHhHH
Q 036577 256 YTTIIDGLCKEGFVDKAKELFLKMKDENINP--NVVTYN----SLIHGFCYANDWNEAKCLLIEMMDQGVQP---NVVTF 326 (470)
Q Consensus 256 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 326 (470)
+..+...+...|++++|...+++.......+ ...... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 6667777777888888888887765421111 111111 22334667777887777777665432111 12234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH-hHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 327 NVIMDELCKNGKMDEASRLLDLMIQI----GVRPNA-FVYNTLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 327 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55666777777777777777766543 111112 2455556666777777777777766554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.6e-12 Score=124.70 Aligned_cols=166 Identities=11% Similarity=0.042 Sum_probs=138.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
++.+|+.+..++.+.|++++|++.|++.++.. +.+..++..+..+|.+.|++++|++.|++.++.. +.+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 57888888999999999999999998888764 5567888888899999999999999998888864 446788888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK 265 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (470)
+|...|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.|++..+.. +-+...+..+..++..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-------PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHhhhhhHHHh
Confidence 9999999999999998888763 3356788888888999999999999999988876 5577888888999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 036577 266 EGFVDKAKELFLKMKD 281 (470)
Q Consensus 266 ~g~~~~a~~~~~~~~~ 281 (470)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9998888888877654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.5e-12 Score=123.56 Aligned_cols=168 Identities=12% Similarity=0.009 Sum_probs=124.8
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 036577 250 EPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVI 329 (470)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 329 (470)
+.+...|+.+..++.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|+..|++.++.. +-+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4456778888888888888888888888877653 2356777777888888888888888888777764 4456677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEI 409 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (470)
..++...|++++|++.|++.++.+.. +...|+.+..+|...|++++|++.|++.++.. +-+...|..+..+|...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 77888888888888888877776544 56777777777778888888888887777653 33677777777777778888
Q ss_pred hHHHHHHHHHHH
Q 036577 410 EGALSLYSEMLS 421 (470)
Q Consensus 410 ~~A~~~~~~~~~ 421 (470)
++|.+.++++++
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777777764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-11 Score=99.91 Aligned_cols=166 Identities=17% Similarity=0.047 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKG 186 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (470)
...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567777888888888888888888877654 4567788888888888888888888888887763 4567778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhC
Q 036577 187 LCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKE 266 (470)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 266 (470)
+...|++++|.+.++++.... +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+...
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-------PNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHc
Confidence 888888888888888887653 3456677778888888888888888888887765 45677788888888888
Q ss_pred CCHHHHHHHHHHHHhC
Q 036577 267 GFVDKAKELFLKMKDE 282 (470)
Q Consensus 267 g~~~~a~~~~~~~~~~ 282 (470)
|++++|.+.++.+.+.
T Consensus 158 ~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 158 GRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 8888888888877653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.6e-11 Score=102.15 Aligned_cols=202 Identities=11% Similarity=-0.030 Sum_probs=157.0
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 036577 250 EPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVI 329 (470)
Q Consensus 250 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 329 (470)
..|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 456788899999999999999999999999887543677888889999999999999999999999874 4466788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVRPNA-------FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMH--DVFSYSILI 400 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 400 (470)
..++...|++++|...+++..+..+. +. ..|..+...+...|++++|...|++.++.. +. +...|..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 99999999999999999999987544 44 457888888999999999999999998864 33 467788888
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 036577 401 NGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTW 464 (470)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 464 (470)
.+|...|+ ..++++...+. .+...|.... ....|.+++|...+++..+ +.|+..
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~ 214 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRT 214 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHH-----HHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCH
Confidence 88865543 44455544322 2344444333 3345778999999999988 566644
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-10 Score=99.88 Aligned_cols=154 Identities=12% Similarity=-0.044 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 366 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (470)
++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++..+..+. +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 445566666666666777777777766666542255555555666666667777777777666665433 4556666666
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HhHHHHHHH
Q 036577 367 GFCLTGRVNRAKELFVSMESNRCMHDV-------FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD---VVIYNTLFI 436 (470)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 436 (470)
++...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|+++++. .|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 6666677777777666666543 2233 44666666666667777777777666643 343 345555666
Q ss_pred HHHhcCCH
Q 036577 437 GLFEIHQV 444 (470)
Q Consensus 437 ~~~~~g~~ 444 (470)
++...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-11 Score=108.15 Aligned_cols=235 Identities=12% Similarity=-0.006 Sum_probs=163.0
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCC-cccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC------C-CCCCHHHHHH
Q 036577 222 LCRTGHTIVALNLFEEMANGNGEIG-VVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE------N-INPNVVTYNS 293 (470)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~ 293 (470)
....|++++|+.++++......... ...+....++..+...+...|++++|...++++... + .+....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 3457899999999999877431100 001234667888999999999999999999998753 1 1234567888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC------C-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHh
Q 036577 294 LIHGFCYANDWNEAKCLLIEMMDQ------G-VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI------GVRP-NAF 359 (470)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~ 359 (470)
+...|...|++++|...+.+..+. . .+.....+..+...+...|++++|...++++.+. +..| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999998764 1 1234567888889999999999999999998875 1122 356
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHC-------CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH--HC-C-CCC-
Q 036577 360 VYNTLMDGFCLTGRVNRAKELFVSMESN-------RC-MHDVFSYSILINGYCKNKEIEGALSLYSEML--SK-G-IKP- 426 (470)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~-~~p- 426 (470)
++..+...+...|++++|...++++.+. .. ......|..+...+...+....+..+..... +. + ..|
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 7888999999999999999999988753 11 1233344444444444444333333221111 11 1 112
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 427 DVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
...++..+...|...|++++|.+++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 244788899999999999999999999875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-11 Score=108.32 Aligned_cols=241 Identities=14% Similarity=0.054 Sum_probs=136.9
Q ss_pred ccCChhHHHHHHHHHHhcC------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 83 TTITPNEAFCIFDYMLNMR------PSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 156 (470)
..|++++|+.+|+++++.. ..+....++..+...+...|++++|+..++++.+..
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------- 73 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIR------------------- 73 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH-------------------
Confidence 4456666666666655421 111245667777777777777777777777665420
Q ss_pred CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------C-CCCCcchHHHHHHHHHhcCChH
Q 036577 157 RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAF------G-CEPNVITYSTLINGLCRTGHTI 229 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g-~~~~~~~~~~l~~~~~~~g~~~ 229 (470)
+.......+....++..+...|...|++++|.+.+++.... . .+....++..+...+...|+++
T Consensus 74 ---------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 144 (283)
T 3edt_B 74 ---------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144 (283)
T ss_dssp ---------HHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred ---------HHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 00000000112344555555566666666666665555432 1 1223455666777777777887
Q ss_pred HHHHHHHHHHhcCCCC-CcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHc
Q 036577 230 VALNLFEEMANGNGEI-GVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-------NINP-NVVTYNSLIHGFCY 300 (470)
Q Consensus 230 ~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~ 300 (470)
+|...++++....... +...+....++..+..++...|++++|.+.++++... ...+ ....+..+...+..
T Consensus 145 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (283)
T 3edt_B 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES 224 (283)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc
Confidence 7777777776541000 0001334678889999999999999999999988753 1111 22333333333333
Q ss_pred cCCHH------HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036577 301 ANDWN------EAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 301 ~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 352 (470)
.+... .+...+..... ..+....++..+..+|...|++++|...+++..+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 225 KDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp TCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33322 22222221111 11223457888999999999999999999998764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.29 E-value=5.9e-09 Score=91.11 Aligned_cols=244 Identities=10% Similarity=0.011 Sum_probs=122.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036577 115 GCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIM 194 (470)
Q Consensus 115 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (470)
+-..-.|++..++.-..++ .-.........+.+++...|+++... .-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc---
Confidence 3344467777776632222 11222333444556677777665421 1123333333333222 211
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHH
Q 036577 195 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKE 274 (470)
Q Consensus 195 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 274 (470)
|+..|+++...+ +++..++..+..++...|++++|++++.+....+. ..-+...+..++..+.+.|+.+.|.+
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-----~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-----AEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-----STTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 555666655443 23444445566666666777777777766654431 01345566666666666777777777
Q ss_pred HHHHHHhCCCCC-----CHHHHHHHHHHH--Hc--cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 036577 275 LFLKMKDENINP-----NVVTYNSLIHGF--CY--ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRL 345 (470)
Q Consensus 275 ~~~~~~~~~~~~-----~~~~~~~li~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 345 (470)
.+++|.+. .| +..+...++.++ .. .+++.+|..+|+++.+. .|+..+...++.++.+.|++++|...
T Consensus 158 ~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 158 IFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp HHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHH
Confidence 77666553 33 234444444442 22 22666666666666544 34422223333356666666666666
Q ss_pred HHHHHHcC---------CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 346 LDLMIQIG---------VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 346 ~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
++.+.+.. -+-|+.++..++......|+ +|.++++++.+.
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 66544320 01244455444444444554 556666666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=5.3e-10 Score=99.44 Aligned_cols=237 Identities=10% Similarity=0.019 Sum_probs=151.2
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 036577 89 EAFCIFDYMLNMRPSPPPVSSFNILFGCLAKN---KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVL 165 (470)
Q Consensus 89 ~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 165 (470)
+|.+++.+..+.-+. +...| .+. +. +++++|...|++. ...|...|++++|...|
T Consensus 3 ~a~~~~~~a~k~~~~--~~~~~-~~~----~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 3 DPVELLKRAEKKGVP--SSGFM-KLF----SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CHHHHHHHHHHHSSC--CCTHH-HHH----SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred cHHHHHHHHHHHhCc--CCCcc-hhc----CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 466666666665443 21222 221 22 2488888887776 34567788888888888
Q ss_pred HHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC-CcchHHHHHHHHHhc-CChHHHHHH
Q 036577 166 GRILRS----CFTPD-AVTFNSLIKGLCAESRIMEAAALFTKLKAFG----CEP-NVITYSTLINGLCRT-GHTIVALNL 234 (470)
Q Consensus 166 ~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g----~~~-~~~~~~~l~~~~~~~-g~~~~a~~~ 234 (470)
++..+. |.++. ..+|+.+..+|...|++++|+..|++..+.. -.. ...++..+...|... |++++|+..
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 877653 21222 4678889999999999999999998876531 110 135788888999996 999999999
Q ss_pred HHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHccCCHHHHH
Q 036577 235 FEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNV------VTYNSLIHGFCYANDWNEAK 308 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~ 308 (470)
|++.....+..+. ......++..+...+.+.|++++|+..|++.......... ..|..+..++...|++++|.
T Consensus 141 ~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 219 (292)
T 1qqe_A 141 YELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219 (292)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9998875410000 0001356788888899999999999999888875332221 14566677778888888888
Q ss_pred HHHHHHHHCCCCCCH------hHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 036577 309 CLLIEMMDQGVQPNV------VTFNVIMDELC--KNGKMDEASRLLDLMI 350 (470)
Q Consensus 309 ~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 350 (470)
..|++..+. .|+. ..+..++.++. ..+++++|+..|+.+.
T Consensus 220 ~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 220 RTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 888877654 2221 12333344443 2344556665555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.24 E-value=3.3e-08 Score=94.21 Aligned_cols=124 Identities=10% Similarity=-0.017 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG-RVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
.|...+....+.++.+.|..+|+++ +. ...+...|...+..-...+ +.+.|..+|+...+.. +.+...|...++..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3444455555677788898999888 32 2234445543333322333 6899999998887753 33455667777777
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 404 CKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
...|+.+.|..+|+++. .....|...+.--...|+.+.+.++++++.+
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999998872 2567788888777788999999998888873
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.4e-10 Score=93.90 Aligned_cols=170 Identities=13% Similarity=0.099 Sum_probs=91.4
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHccCCHHHHHHHHHHHHH
Q 036577 253 TVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS----------------LIHGFCYANDWNEAKCLLIEMMD 316 (470)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~ 316 (470)
...+......+...|++++|...|++..... +.+...|.. +..+|.+.|++++|+..|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344455666777888888888888877652 113344444 55556666666666666666655
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCCHH
Q 036577 317 QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGR--VNRAKELFVSMESNRCMHDVF 394 (470)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~ 394 (470)
.. +.+...+..+..++...|++++|...|+++++..+. +...+..+..+|...|+ .+.+...++.... ..|...
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 53 334555666666666666666666666666665433 45555555555544332 2333334433322 122222
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV 429 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 429 (470)
.+.....++...|++++|+..|++.++. .|+..
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 3333444455556666666666666533 44443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.8e-10 Score=100.39 Aligned_cols=238 Identities=14% Similarity=0.036 Sum_probs=168.2
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhc--C-ChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHH
Q 036577 195 EAAALFTKLKAFGCEPNVITYSTLINGLCRT--G-HTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDK 271 (470)
Q Consensus 195 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 271 (470)
+|.+++++..+. .++....| . +.+. + ++++|...|++. +..|...|++++
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~----~~~~~~~~~~~~A~~~~~~a---------------------~~~~~~~g~~~~ 55 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-K----LFSGSDSYKFEEAADLCVQA---------------------ATIYRLRKELNL 55 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-H----HHSCCSHHHHHHHHHHHHHH---------------------HHHHHHTTCTHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-h----hcCCCCCccHHHHHHHHHHH---------------------HHHHHHcCCHHH
Confidence 466677776654 22222222 2 2233 2 478888887776 235678899999
Q ss_pred HHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHHc-CCHH
Q 036577 272 AKELFLKMKDE----NINP-NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----GVQP-NVVTFNVIMDELCKN-GKMD 340 (470)
Q Consensus 272 a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~-g~~~ 340 (470)
|.+.|++.... |.++ ...+|+.+..+|.+.|++++|+..+++..+. |... ...++..+..+|... |+++
T Consensus 56 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~ 135 (292)
T 1qqe_A 56 AGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA 135 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHH
Confidence 99999887653 2222 2568899999999999999999999988753 2111 135788889999996 9999
Q ss_pred HHHHHHHHHHHcCCCC-C----HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCh
Q 036577 341 EASRLLDLMIQIGVRP-N----AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDV------FSYSILINGYCKNKEI 409 (470)
Q Consensus 341 ~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~ 409 (470)
+|+..+++..+..... + ..++..++..+...|++++|...|++..+....... ..|..+..++...|++
T Consensus 136 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 215 (292)
T 1qqe_A 136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH
Confidence 9999999988752211 1 356888999999999999999999999886432221 2678888899999999
Q ss_pred hHHHHHHHHHHHCCCCCCH------hHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCh
Q 036577 410 EGALSLYSEMLSKGIKPDV------VIYNTLFIGLF--EIHQVERAFKLFDEMRRDGVAADT 463 (470)
Q Consensus 410 ~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~g~~p~~ 463 (470)
++|+..|++.++. .|+. ..+..++.++. ..+++++|++.|+++.. +.|+.
T Consensus 216 ~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~ 273 (292)
T 1qqe_A 216 VAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWK 273 (292)
T ss_dssp HHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHH
T ss_pred HHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHH
Confidence 9999999998853 3332 23445566665 45778999888877654 44443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.21 E-value=4.2e-09 Score=92.03 Aligned_cols=241 Identities=10% Similarity=-0.023 Sum_probs=143.6
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 036577 152 FCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVA 231 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a 231 (470)
..-.|++..++.- ..+.........-..+.++|...|+++.. ..-.|....+..+. .|...+ |
T Consensus 23 ~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----C
T ss_pred HHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----H
Confidence 3456777766652 33222122233334455777777766531 11122222333332 233322 6
Q ss_pred HHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCCHHHHHHH
Q 036577 232 LNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI-NPNVVTYNSLIHGFCYANDWNEAKCL 310 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~ 310 (470)
+..|++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.
T Consensus 86 ~~~l~~l~~~~-------~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 86 IEELENLLKDK-------QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CHHHHHTTTTS-------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66677666543 34455556777778888888888888887766542 13566677777888888888888888
Q ss_pred HHHHHHCCCCC-----CHhHHHHHHHHH--HHcC--CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHH
Q 036577 311 LIEMMDQGVQP-----NVVTFNVIMDEL--CKNG--KMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELF 381 (470)
Q Consensus 311 ~~~~~~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (470)
+++|.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|++.+
T Consensus 159 l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 159 FDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 8888765 45 244555555553 2233 788888888887654 344333344444777788888888888
Q ss_pred HHHHHCC---------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 382 VSMESNR---------CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 382 ~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+.+.+.. -+.+..++..+|.+....|+ +|.++++++.+.
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 7655421 03366666566666666676 777888888765
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-09 Score=84.32 Aligned_cols=128 Identities=16% Similarity=0.229 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
+..+...+...|++++|..+++++.+.+.. +...+..++..+...|++++|...++++.... +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 445555666666666666666666655432 45556666666666666666666666665543 3355566666666777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 406 NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 777777777777666542 22455666666777777777777777777665
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=116.31 Aligned_cols=174 Identities=9% Similarity=-0.076 Sum_probs=148.7
Q ss_pred cccCChhHHHHHHHHHH--------hcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 82 ITTITPNEAFCIFDYML--------NMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 153 (470)
...|++++|++.|+.++ +..|. +...|..+...+.+.|++++|++.|+++.+.+ +.+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE--SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT--CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc--chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 56789999999999999 66665 78889999999999999999999999998875 667889999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 036577 154 KMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALN 233 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~ 233 (470)
..|++++|.+.|++.++.. +.+...|..+..+|.+.|++++ ++.|++..+.. +.+...|..+..++.+.|++++|++
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999874 4567889999999999999999 99999998864 3457789999999999999999999
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF 268 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 268 (470)
.|+++.+.+ +.+...+..+..++...++
T Consensus 556 ~~~~al~l~-------P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTS-------RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTS-------TTHHHHHHHHHHHTC----
T ss_pred HHHhhcccC-------cccHHHHHHHHHHHHccCC
Confidence 999998765 4456778788887766554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-08 Score=89.21 Aligned_cols=231 Identities=12% Similarity=0.003 Sum_probs=179.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---C
Q 036577 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNK--HYDTVLSLFKRLNSTGLFPDLYTYNILINCF----CKM---G 156 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---g 156 (470)
..++|+.+++.++..+|. ...+|+.-..++...| +++++++.++.+...+ +.+..+|+.-...+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINELAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 347899999999999997 8999999999999999 9999999999998875 55666777666555 555 7
Q ss_pred CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC------h
Q 036577 157 RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIM--EAAALFTKLKAFGCEPNVITYSTLINGLCRTGH------T 228 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~------~ 228 (470)
++++++++++.+++.. +-+..+|+.-.-++.+.|.++ ++++.++++.+.. +.|..+|+.....+...|. +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 8899999999999874 568888988888888888888 9999999998864 4577788777777777776 8
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHH
Q 036577 229 IVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDK-AKELFLKMKDEN--INPNVVTYNSLIHGFCYANDWN 305 (470)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~ 305 (470)
+++++.++.+...+ +-|...|+.+...+.+.|+... +..+.+++...+ -+.+...+..+...|.+.|+.+
T Consensus 203 ~eEl~~~~~aI~~~-------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 203 DEELNYVKDKIVKC-------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhC-------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 88999999988876 6788888888888888887444 445666555432 1346777788888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHH
Q 036577 306 EAKCLLIEMMDQGVQPNVVTFNV 328 (470)
Q Consensus 306 ~a~~~~~~~~~~~~~~~~~~~~~ 328 (470)
+|.++++.+.+.--+....-|+.
T Consensus 276 ~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 276 ESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHHHhccChHHHHHHHH
Confidence 88888888775321334444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-09 Score=94.47 Aligned_cols=172 Identities=9% Similarity=-0.049 Sum_probs=127.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC--CCCHHH
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD---LYTYNILINCFCKMGRVSPGFVVLGRILRSCF--TPDAVT 179 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~ 179 (470)
.++..+-.+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|...|+++++... +....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 366777777888888888888888888887763 223 56777888888888888888888888887521 122456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCCcchH-----------------HHHHHHHHhcCChHHHHHH
Q 036577 180 FNSLIKGLCA--------ESRIMEAAALFTKLKAFGCEPNVITY-----------------STLINGLCRTGHTIVALNL 234 (470)
Q Consensus 180 ~~~l~~~~~~--------~g~~~~a~~~~~~~~~~g~~~~~~~~-----------------~~l~~~~~~~g~~~~a~~~ 234 (470)
+..+..++.. .|++++|+..|+++.+.. +.+.... ..+...|.+.|++++|+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 6777777877 888888888888887653 2223333 4567889999999999999
Q ss_pred HHHHHhcCCCCCcccCCCHhhHHHHHHHHHhC----------CCHHHHHHHHHHHHhC
Q 036577 235 FEEMANGNGEIGVVCEPNTVTYTTIIDGLCKE----------GFVDKAKELFLKMKDE 282 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 282 (470)
|+++....+. .......+..+..+|... |++++|...|+.+.+.
T Consensus 171 ~~~~l~~~p~----~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 171 YEAVFDAYPD----TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHCTT----STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC----CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 9999887531 111345777888888866 8888999999888775
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-10 Score=96.07 Aligned_cols=158 Identities=12% Similarity=0.014 Sum_probs=127.1
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 036577 79 EGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNI----------------LFGCLAKNKHYDTVLSLFKRLNSTGLFPDL 142 (470)
Q Consensus 79 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 142 (470)
......|++++|+..|+.+++..|. +...|.. +..++.+.|++++|+..|++..+.. +.+.
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 88 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNID--RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNV 88 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHH--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 3445678999999999999998876 6777887 9999999999999999999999875 6688
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 036577 143 YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESR--IMEAAALFTKLKAFGCEPNVITYSTLIN 220 (470)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 220 (470)
..+..+..++...|++++|...|+++++.. +.+..++..+...|...|+ .+.+...++.... ..|....+.....
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~ 165 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHH
Confidence 999999999999999999999999999874 5578889999988876654 4455666666543 2233334555666
Q ss_pred HHHhcCChHHHHHHHHHHHhcC
Q 036577 221 GLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
++...|++++|+..|++..+..
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 7778899999999999998754
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-09 Score=82.29 Aligned_cols=130 Identities=17% Similarity=0.251 Sum_probs=84.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFC 369 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (470)
.+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+.. +...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 34455566666666666666666665543 334555666666666677777777777776665432 4556666677777
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 370 LTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
..|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777766543 335666677777777777777777777776653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-09 Score=94.20 Aligned_cols=64 Identities=9% Similarity=0.081 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 036577 177 AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPN---VITYSTLINGLCRTGHTIVALNLFEEMANG 241 (470)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 241 (470)
...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|+..|+++...
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 81 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI 81 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3344444444444555555555555444421 112 233444444444444455554444444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=8.1e-09 Score=86.91 Aligned_cols=180 Identities=11% Similarity=0.043 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC----CHHHHHHH
Q 036577 270 DKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG----KMDEASRL 345 (470)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~ 345 (470)
.+|.+.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677787777764 77788888888888899999999999988865 56667777777777 6 88999999
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCChhHHHHHH
Q 036577 346 LDLMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESNRCM-HDVFSYSILINGYCK----NKEIEGALSLY 416 (470)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~ 416 (470)
|++..+.+ +...+..|...|.. .+++++|...|++..+.+.. .+...+..|...|.. .+++++|+.+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99987764 56777788888877 78899999999988876521 126788888888888 78899999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCCCC
Q 036577 417 SEMLSKGIKPDVVIYNTLFIGLFEI-H-----QVERAFKLFDEMRRDGVAA 461 (470)
Q Consensus 417 ~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~~p 461 (470)
++..+. ..+...+..|...|... | +.++|.++|++..+.|...
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 998876 23445666777777653 3 8999999999988877543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-09 Score=106.66 Aligned_cols=154 Identities=12% Similarity=-0.045 Sum_probs=122.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
.|++++|+..|+++++..|. +...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 46889999999999998876 88999999999999999999999999999875 5678899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc---CChHHHHHHHHHHHh
Q 036577 164 VLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRT---GHTIVALNLFEEMAN 240 (470)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 240 (470)
.+++.++.. +.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999999874 5568899999999999999999999999998864 34567888899999999 999999999999988
Q ss_pred cC
Q 036577 241 GN 242 (470)
Q Consensus 241 ~~ 242 (470)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 76
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-09 Score=109.19 Aligned_cols=174 Identities=8% Similarity=-0.085 Sum_probs=133.6
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036577 118 AKNKHYDTVLSLFKRLN--------STGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCA 189 (470)
Q Consensus 118 ~~~~~~~~A~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (470)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|.+.++++++.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67888999999998887 432 4566788888888888899999999888888764 4567788888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCH
Q 036577 190 ESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFV 269 (470)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 269 (470)
.|++++|++.|++..+.. +.+...|..+..++.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------CchHHHHHHHHHHHHHcCCH
Confidence 899999999998888763 3356778888888888888888 88888888776 55777888888888888999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 036577 270 DKAKELFLKMKDENINPNVVTYNSLIHGFCYAND 303 (470)
Q Consensus 270 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 303 (470)
++|.+.|+++.+.+ +.+...+..+..++...++
T Consensus 551 ~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99988888887653 1235566666666655444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3e-10 Score=89.92 Aligned_cols=146 Identities=9% Similarity=-0.075 Sum_probs=118.4
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 77 SGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (470)
Q Consensus 77 ~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 156 (470)
.|..+...|++++|+..|.......|. +...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ--KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH--HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 355667788999999999999876655 66778889999999999999999999998875 668899999999999999
Q ss_pred CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 036577 157 RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAAL-FTKLKAFGCEPNVITYSTLINGLCRTGH 227 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 227 (470)
++++|...|++.++.. +.+..+|..+...|.+.|++++|.+. +++..+.. |-+..+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999874 45788999999999999999876655 57777653 3356667766666666664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-07 Score=83.73 Aligned_cols=217 Identities=9% Similarity=0.041 Sum_probs=132.3
Q ss_pred chHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCcchHHHHHHHH----Hhc---CChH
Q 036577 159 SPGFVVLGRILRSCFTPDAVTFNSLIKGLCAES--RIMEAAALFTKLKAFGCEPNVITYSTLINGL----CRT---GHTI 229 (470)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~----~~~---g~~~ 229 (470)
++|++.++.++..+ +.+..+|+.-...+...| +++++++.++.+.... +-+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 35555565555543 334455665555565555 7777777777776653 23445555444443 334 6788
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----
Q 036577 230 VALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVD--KAKELFLKMKDENINPNVVTYNSLIHGFCYAND---- 303 (470)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---- 303 (470)
+++++++.+.+.+ +.+..+|+.-.-++.+.|.++ ++++.++++.+.+. -|...|+.-.......+.
T Consensus 128 ~EL~~~~~~l~~~-------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 128 REFDILEAMLSSD-------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp HHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchh
Confidence 9999999998876 678888888888888888887 88888888887653 377777766666666555
Q ss_pred --HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH-HHHHHHHHHHcC--CCCCHhHHHHHHHHHHcCCCHHHHH
Q 036577 304 --WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDE-ASRLLDLMIQIG--VRPNAFVYNTLMDGFCLTGRVNRAK 378 (470)
Q Consensus 304 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 378 (470)
++++++.+.+++... +-|...|+.....+.+.|+... +..+...+...+ -..+...+..++.+|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 566666666665554 4455666666555555555322 333444433322 0124444555555555555555555
Q ss_pred HHHHHHHH
Q 036577 379 ELFVSMES 386 (470)
Q Consensus 379 ~~~~~~~~ 386 (470)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.8e-10 Score=87.81 Aligned_cols=145 Identities=10% Similarity=-0.074 Sum_probs=99.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCH
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRV 374 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 374 (470)
...+...|++++|+..+....... +.+...+..+...|.+.|++++|+..|++.++..+. +..+|..+..+|...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 344556677778877777765442 223445566777888888888888888888877554 677788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHH-HHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 036577 375 NRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSL-YSEMLSKGIKPDVVIYNTLFIGLFEIHQ 443 (470)
Q Consensus 375 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 443 (470)
++|...|++.++.. +-+...|..+..+|.+.|++++|.+. +++.++.... +..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 88888888877754 33677788888888888887776654 4777654322 45566655566656554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-09 Score=89.45 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=125.1
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCcc
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC-FCKMGRVS 159 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~ 159 (470)
+...|++++|...|+.+++..|. +...|..+..++.+.|++++|+..|++..+.. |+...+..+... +...+...
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDELQS--RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHHHHT--SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccc
Confidence 34568999999999999998887 89999999999999999999999999987764 355444333322 22334455
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 036577 160 PGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEP-NVITYSTLINGLCRTGHTIVALNLFEEM 238 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 238 (470)
.|...+++.++.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++.
T Consensus 92 ~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 92 PELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 6889999988864 4568899999999999999999999999998864222 2558889999999999999999999987
Q ss_pred Hh
Q 036577 239 AN 240 (470)
Q Consensus 239 ~~ 240 (470)
..
T Consensus 171 l~ 172 (176)
T 2r5s_A 171 LY 172 (176)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-08 Score=83.85 Aligned_cols=60 Identities=18% Similarity=0.019 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 036577 176 DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTG----HTIVALNLFEEMA 239 (470)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~ 239 (470)
+...+..|...|...+++++|++.|++..+.| +...+..+...|.. + ++++|.++|++..
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 33444444444444444444444444444432 23333334333333 3 4444444444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-09 Score=86.60 Aligned_cols=78 Identities=15% Similarity=0.034 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 036577 342 ASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMH-DVFSYSILINGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (470)
|...+++..+..+. +...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|...|++.+
T Consensus 93 a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 45555555554322 45555555555556666666666665555543221 23455555556666666666666555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-08 Score=84.35 Aligned_cols=186 Identities=8% Similarity=-0.062 Sum_probs=117.0
Q ss_pred CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---hHH
Q 036577 252 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENIN-P-NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNV---VTF 326 (470)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 326 (470)
+...+..+...+.+.|++++|...|+.+...... + ....+..+..+|.+.|++++|+..|+++.+.. +.+. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 3455666777888888899999888888765221 1 13567777888888888888888888888763 1121 234
Q ss_pred HHHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 036577 327 NVIMDELCK------------------NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 327 ~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
..+..++.. .|++++|...|+++++..+. +...+...... ..+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH----
Confidence 444445543 34455555555555544221 11111111000 0000000
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036577 389 CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD--VVIYNTLFIGLFEIHQVERAFKLFDEMRRD 457 (470)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (470)
......+...|.+.|++++|+..|+++++...... ...+..+..++.+.|+.++|.+.++.+...
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 01123466778899999999999999997632211 246788899999999999999999998874
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.5e-09 Score=102.30 Aligned_cols=154 Identities=8% Similarity=-0.021 Sum_probs=117.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 036577 266 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRL 345 (470)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 345 (470)
.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887753 3467888999999999999999999999998875 55678888999999999999999999
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHC
Q 036577 346 LDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN---KEIEGALSLYSEMLSK 422 (470)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 422 (470)
+++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++.++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999988644 67888999999999999999999999988764 44788889999999999 9999999999999876
Q ss_pred C
Q 036577 423 G 423 (470)
Q Consensus 423 ~ 423 (470)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.2e-09 Score=92.19 Aligned_cols=166 Identities=14% Similarity=0.009 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHH-HHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFN-SLI 184 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~ 184 (470)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++... .|+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 66777788888888999999999999888765 567788888888899999999999988888765 34443332 233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHH
Q 036577 185 KGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLC 264 (470)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 264 (470)
..+...++.++|...+++..... +.+...+..+...+...|++++|+..|+++....+. ..+...+..++..+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~-----~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT-----AADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----GGGGHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-----cccchHHHHHHHHHH
Confidence 34667777888888888887753 345677888888888899999999999988887621 223677888888888
Q ss_pred hCCCHHHHHHHHHHHH
Q 036577 265 KEGFVDKAKELFLKMK 280 (470)
Q Consensus 265 ~~g~~~~a~~~~~~~~ 280 (470)
..|+.++|...|++..
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 8888888888887654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7e-09 Score=91.83 Aligned_cols=160 Identities=10% Similarity=0.036 Sum_probs=69.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 036577 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNS 293 (470)
Q Consensus 214 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 293 (470)
.+..+...+.+.|++++|...|+++.... +.+...+..+...+.+.|++++|...++.+... .|+......
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLS-------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 33344444445555555555555554443 334444445555555555555555555444432 122221111
Q ss_pred H-HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHcC
Q 036577 294 L-IHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRP-NAFVYNTLMDGFCLT 371 (470)
Q Consensus 294 l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 371 (470)
. ...+...++.++|...+++..+.. +.+...+..+...+...|++++|...+.++.+..+.. +...+..++..+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 1 111333344444444444444432 3334444444444445555555555554444443221 133444444444444
Q ss_pred CCHHHHHHHHHH
Q 036577 372 GRVNRAKELFVS 383 (470)
Q Consensus 372 g~~~~A~~~~~~ 383 (470)
|+.++|...+++
T Consensus 269 g~~~~a~~~~r~ 280 (287)
T 3qou_A 269 GTGDALASXYRR 280 (287)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCcHHHHHHH
Confidence 444444444433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.5e-09 Score=93.58 Aligned_cols=204 Identities=13% Similarity=0.017 Sum_probs=118.5
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFV 163 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (470)
.|++++|.+++++..+..+. . + +...+++++|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~--~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT--S---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--C---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc--c---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 45677888888777654332 1 0 11146666666666554 335566677777777
Q ss_pred HHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CcchHHHHHHHHHhcCChHHHHH
Q 036577 164 VLGRILRS----CFT-PDAVTFNSLIKGLCAESRIMEAAALFTKLKAF----GCEP-NVITYSTLINGLCRTGHTIVALN 233 (470)
Q Consensus 164 ~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~a~~ 233 (470)
.+.+..+. +-. .-..+|+.+..+|...|++++|+..|++..+. |-+. ...++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 66665542 100 01345666777777777777777777765432 1111 13456666777766 88888888
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCCHHHHH
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE----NINPN-VVTYNSLIHGFCYANDWNEAK 308 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~ 308 (470)
.|++........+. ......++..+...+.+.|++++|+..|++.... +..+. ...+..+..++...|++++|.
T Consensus 137 ~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 137 LYQQAAAVFENEER-LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88777654310000 0011356677777777778888887777776552 11111 124455555666667777777
Q ss_pred HHHHHHH
Q 036577 309 CLLIEMM 315 (470)
Q Consensus 309 ~~~~~~~ 315 (470)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777766
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.02 E-value=6.3e-07 Score=85.37 Aligned_cols=317 Identities=10% Similarity=-0.013 Sum_probs=207.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH----hcCC
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKH-YDTVLSLFKRLNST-GL-FPDLYTYNILINCFC----KMGR 157 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~-~~-~~~~~~~~~li~~~~----~~g~ 157 (470)
++++.+..+|+..+... |++..|...+....+.+. .+....+|+..... |. +.+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 68999999999998854 488899999988877763 45677888887653 42 346677877776544 3456
Q ss_pred cchHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 036577 158 VSPGFVVLGRILRSCFTPDAVTFNSLIKGLCA-------------ESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR 224 (470)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 224 (470)
.+.+..+|++.++.....-...|......-.. .+.+..|..+++++...--..+...|...+.--..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 78899999999874322122333333222111 12233445555544431000123355554443222
Q ss_pred cC--C-----hHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH-------
Q 036577 225 TG--H-----TIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVT------- 290 (470)
Q Consensus 225 ~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------- 290 (470)
.+ - .+.+..+|+++.... +.+...|...+..+.+.|+.++|..++++.... +.+...
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~ 255 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV 255 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh
Confidence 11 1 345678899988764 556788988899999999999999999988765 222211
Q ss_pred ---------------------------------HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc-
Q 036577 291 ---------------------------------YNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKN- 336 (470)
Q Consensus 291 ---------------------------------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 336 (470)
|...+....+.++.+.|..+|+.. +.. ..+...|...+..-...
T Consensus 256 ~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 256 MDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp TTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHC
Confidence 222222333466788999999988 321 23444444333322233
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 036577 337 GKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLY 416 (470)
Q Consensus 337 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (470)
++.+.|..+|+...+.-.. +...+...++...+.|+.+.|+.+|+++. .....|...+..-...|+.+.+..++
T Consensus 334 ~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3699999999999886432 45566777888888999999999999873 25788888888888899999999999
Q ss_pred HHHHH
Q 036577 417 SEMLS 421 (470)
Q Consensus 417 ~~~~~ 421 (470)
+++.+
T Consensus 408 ~~~~~ 412 (493)
T 2uy1_A 408 DQKMD 412 (493)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88874
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.01 E-value=6.4e-08 Score=82.26 Aligned_cols=195 Identities=11% Similarity=-0.034 Sum_probs=87.3
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHh
Q 036577 79 EGDITTITPNEAFCIFDYMLNMRPSPPP-VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL---YTYNILINCFCK 154 (470)
Q Consensus 79 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~ 154 (470)
..+...|++++|+..|+.+++..|..+. ..++..+..++.+.|++++|+..|+++.+.. +.+. ..+..+..++..
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHHHHHHh
Confidence 3345556666666666666665554221 3455555666666666666666666655542 1111 133333333333
Q ss_pred cCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCChHHHHH
Q 036577 155 MGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNV-ITYSTLINGLCRTGHTIVALN 233 (470)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~~a~~ 233 (470)
.|.. .+ ..|..+...+...|++++|...|+++.+.. |+. ..+.....
T Consensus 91 ~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~------------- 138 (225)
T 2yhc_A 91 LDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKR------------- 138 (225)
T ss_dssp HHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHH-------------
T ss_pred hhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHH-------------
Confidence 2210 00 011112222334567777888887777642 332 22211110
Q ss_pred HHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHH
Q 036577 234 LFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINP--NVVTYNSLIHGFCYANDWNEAKCLL 311 (470)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~ 311 (470)
...+... .......+...+.+.|++++|...|+.+.+..... ....+..+..+|.+.|++++|.+.+
T Consensus 139 -l~~~~~~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 139 -LVFLKDR----------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp -HHHHHHH----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -HHHHHHH----------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 0000000 00112234455555666666666666655532110 0134555556666666666666666
Q ss_pred HHHHHC
Q 036577 312 IEMMDQ 317 (470)
Q Consensus 312 ~~~~~~ 317 (470)
+.+...
T Consensus 208 ~~l~~~ 213 (225)
T 2yhc_A 208 KIIAAN 213 (225)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 655554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-08 Score=90.62 Aligned_cols=227 Identities=9% Similarity=0.012 Sum_probs=158.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCC
Q 036577 189 AESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR-TGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEG 267 (470)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (470)
..|++++|.+++++..+.. +.. +.+ .+++++|...|.++ ...|...|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------------~~~~~~~g 50 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------------AVAFKNAK 50 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------------HHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------------HHHHHHcC
Confidence 3567788888888776542 111 111 46777777776654 34677889
Q ss_pred CHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHHcC
Q 036577 268 FVDKAKELFLKMKDE----NIN-PNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----GVQP-NVVTFNVIMDELCKNG 337 (470)
Q Consensus 268 ~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g 337 (470)
++++|...|.+.... +-. .-..+|..+..+|.+.|++++|+..|++..+. |-.. ...++..+..+|.. |
T Consensus 51 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g 129 (307)
T 2ifu_A 51 QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L 129 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C
Confidence 999999999887653 111 11457888889999999999999999987653 2111 13567788888888 9
Q ss_pred CHHHHHHHHHHHHHcCCCC-----CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcC
Q 036577 338 KMDEASRLLDLMIQIGVRP-----NAFVYNTLMDGFCLTGRVNRAKELFVSMESN----RCMHD-VFSYSILINGYCKNK 407 (470)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g 407 (470)
++++|+..+++.++..... ...++..+...|...|++++|...|++.... +..+. ...+..++.++...|
T Consensus 130 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g 209 (307)
T 2ifu_A 130 DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA 209 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC
Confidence 9999999999987652111 1467888999999999999999999988763 11111 236777788888899
Q ss_pred ChhHHHHHHHHHHHCCCC-CC---HhHHHHHHHHHHhcCCHHHHHHH
Q 036577 408 EIEGALSLYSEMLSKGIK-PD---VVIYNTLFIGLFEIHQVERAFKL 450 (470)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~-p~---~~~~~~l~~~~~~~g~~~~A~~~ 450 (470)
++++|...|++.+ .... ++ ......++.++ ..|+.+.+.++
T Consensus 210 ~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 210 DYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp CHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred CHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999999998 4211 11 12344555555 57887776663
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-08 Score=82.18 Aligned_cols=126 Identities=10% Similarity=0.121 Sum_probs=106.9
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcC
Q 036577 78 GEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC-FCKMG 156 (470)
Q Consensus 78 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g 156 (470)
+......|++++|+..|+..+...|. +...|..+..++...|++++|+..|++..+.. +.+...+..+..+ +...|
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQAS 93 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCCS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcC
Confidence 34566788999999999999998886 88999999999999999999999999998875 5578888888888 78999
Q ss_pred Cc--chHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036577 157 RV--SPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFG 207 (470)
Q Consensus 157 ~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 207 (470)
++ ++|...++++++.. +.+...+..+...|...|++++|...|+++.+..
T Consensus 94 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 98 99999999999874 4567888999999999999999999999998863
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=6.4e-07 Score=79.88 Aligned_cols=172 Identities=9% Similarity=-0.001 Sum_probs=143.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CcchHH
Q 036577 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM-G-RVSPGF 162 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-~~~~a~ 162 (470)
..++|+++++.++..+|. +..+|+.--.++...| .+++++.+++.+.... +.+..+|+.-..++... + ++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA--HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 457899999999999997 8999999999998888 5999999999999886 67788898888888877 7 899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC-------
Q 036577 163 VVLGRILRSCFTPDAVTFNSLIKGLCAESRIM--------EAAALFTKLKAFGCEPNVITYSTLINGLCRTGH------- 227 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~------- 227 (470)
++++.+++.. +.+..+|+.-.-++.+.|.++ ++++.++++.+.. +.|..+|+.....+.+.++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 9999999875 557888887776666666666 8999999998864 4578889888888877776
Q ss_pred hHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCH
Q 036577 228 TIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFV 269 (470)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 269 (470)
++++++.++++.... +-|...|+.+-..+.+.|+.
T Consensus 224 ~~eELe~~~~aI~~~-------P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-------PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCC
Confidence 689999999998876 67888888877777776654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.8e-09 Score=80.03 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=52.5
Q ss_pred HhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 73 RFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152 (470)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 152 (470)
.++..|..+...|++++|++.|+.+++..|. +..+|..+..++.+.|++++|+..|++.++.+ +.+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE--NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 3334444455555555555555555555554 55555555555555555555555555555543 34455555555555
Q ss_pred HhcCCcchHHHHHHHHHhC
Q 036577 153 CKMGRVSPGFVVLGRILRS 171 (470)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~ 171 (470)
...|++++|.+.|++.++.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 5555555555555555554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.3e-08 Score=86.24 Aligned_cols=187 Identities=8% Similarity=-0.066 Sum_probs=130.4
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCCC--------------
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNIL-------FGCLAKNKHYDTVLSLFKRLNSTGLFPD-------------- 141 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~m~~~~~~~~-------------- 141 (470)
..++.+.|.+.|..+.+..|. ....|..+ ...+.+.++..+++..+..-.+. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcccc
Confidence 468999999999999999987 89999988 57777777777777776665552 221
Q ss_pred --------HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--C
Q 036577 142 --------LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEP--N 211 (470)
Q Consensus 142 --------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~--~ 211 (470)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .| .
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 2234445667778888888888887776643 333355566667778888888888887554421 11 1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCC--CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 036577 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEP--NTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 282 (470)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (470)
...+..+..++.+.|++++|+..|++..... ..| ..........++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSP------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTST------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2356667777888888888888888876432 113 3345666677777788888888888887775
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4e-07 Score=80.77 Aligned_cols=164 Identities=9% Similarity=0.056 Sum_probs=123.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCC-CCCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HhHHH
Q 036577 293 SLIHGFCYANDWNEAKCLLIEMMDQGV-QPNV----VTFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PN----AFVYN 362 (470)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~ 362 (470)
..+..+...|++++|..++++..+... .++. ..+..+...+...+++++|...++++.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887431 2221 12334666677788999999999999885332 22 23688
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC-HhHH
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMES----N-RCMH-DVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIKPD-VVIY 431 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~ 431 (470)
.++.+|...|++++|...|+++.+ . +..+ ...+|..+..+|.+.|++++|+..+++.++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999988874 1 1122 3447889999999999999999999988753 22222 5688
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHH
Q 036577 432 NTLFIGLFEIH-QVERAFKLFDEMRR 456 (470)
Q Consensus 432 ~~l~~~~~~~g-~~~~A~~~~~~m~~ 456 (470)
..+..++.+.| .+++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88999999999 46999999988864
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.8e-06 Score=77.05 Aligned_cols=103 Identities=8% Similarity=0.005 Sum_probs=49.2
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-C-ChHHHH
Q 036577 156 GRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAES-RIMEAAALFTKLKAFGCEPNVITYSTLINGLCRT-G-HTIVAL 232 (470)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-g-~~~~a~ 232 (470)
+..++|+++++.++..+ +.+..+|+.--..+...| .++++++.++.+.... +-+..+|+.-...+.+. + +.++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 33445555555555543 334445555555555555 3555555555555432 22344444444444443 4 455555
Q ss_pred HHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCC
Q 036577 233 NLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEG 267 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 267 (470)
++++.+.+.+ +.|..+|+.-.-++.+.|
T Consensus 146 ~~~~k~L~~d-------pkNy~AW~~R~wvl~~l~ 173 (349)
T 3q7a_A 146 EYIHGSLLPD-------PKNYHTWAYLHWLYSHFS 173 (349)
T ss_dssp HHHHHHTSSC-------TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-------CCCHHHHHHHHHHHHHhc
Confidence 5555555443 344444444444443333
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.9e-07 Score=77.29 Aligned_cols=129 Identities=11% Similarity=-0.019 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDEL 333 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 333 (470)
..+..+...+...|++++|.+.|++.. .|+...+..+..+|...|++++|...+++..+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 344555666666677777776666553 3456666666666666666666666666666553 34455666666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC---------------HhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 334 CKNGKMDEASRLLDLMIQIGVRPN---------------AFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
...|++++|...++.+.+...... ...+..+..++...|++++|...|+...+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666666666532211 144555555555556666665555555554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.87 E-value=5.3e-07 Score=79.99 Aligned_cols=162 Identities=9% Similarity=0.017 Sum_probs=90.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCH----hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CC----H
Q 036577 218 LINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNT----VTYTTIIDGLCKEGFVDKAKELFLKMKDENIN-PN----V 288 (470)
Q Consensus 218 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~ 288 (470)
.+..+...|++++|.+++++...... ..++. ..+..+...+...|++++|...++++...... ++ .
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEE-----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 35567778888888888888876442 12221 12334555666667777777777777663211 12 2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCC-
Q 036577 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQ-----GVQPN-VVTFNVIMDELCKNGKMDEASRLLDLMIQIG----VRPN- 357 (470)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~- 357 (470)
.+++.+...|...|++++|...++++.+. +..+. ..++..+...|.+.|++++|...+++.++.. ..+.
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 35666666777777777777777666531 11111 1245555556666666666666665554321 1111
Q ss_pred HhHHHHHHHHHHcCCC-HHHHHHHHHHH
Q 036577 358 AFVYNTLMDGFCLTGR-VNRAKELFVSM 384 (470)
Q Consensus 358 ~~~~~~l~~~~~~~g~-~~~A~~~~~~~ 384 (470)
..+|..+..++.+.|+ .++|...+++.
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 3445555555555553 35555555444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-07 Score=74.93 Aligned_cols=129 Identities=13% Similarity=0.034 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
..+..+...+...|++++|...+++..+.... +...+..+..++...|++++|...+++..+.. +.+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34566666777778888888888777776433 56777777777888888888888887777653 34677778888888
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 036577 404 CKNKEIEGALSLYSEMLSKGIKPDVVIYNT--LFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
...|++++|...|+++.+.... +...+.. ++..+...|++++|.+.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888887765322 3344433 3344667788888888887765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-07 Score=77.37 Aligned_cols=144 Identities=13% Similarity=-0.056 Sum_probs=117.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFC 369 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (470)
.+..+...+...|++++|...|++.. .|+...+..+..++...|++++|...+++..+.... +...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 45566778889999999999998774 668889999999999999999999999999988644 7888999999999
Q ss_pred cCCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 036577 370 LTGRVNRAKELFVSMESNRCM--------------H-DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 434 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 434 (470)
..|++++|...|++..+.... | ....+..+..+|...|++++|.+.|++..+.........+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 162 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 162 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHH
Confidence 999999999999999885311 1 2378899999999999999999999999976443333334444
Q ss_pred HHHH
Q 036577 435 FIGL 438 (470)
Q Consensus 435 ~~~~ 438 (470)
+..+
T Consensus 163 ~~~~ 166 (213)
T 1hh8_A 163 MECV 166 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.80 E-value=3e-07 Score=73.57 Aligned_cols=128 Identities=13% Similarity=0.057 Sum_probs=76.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFC 369 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (470)
.+..+...+...|++++|...+.+..+.. +.+...+..+..++...|++++|...+++..+.... +...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 34445555566666666666666665543 334556666666666666666666666666665432 4566666666677
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHHcCChhHHHHHHHHHH
Q 036577 370 LTGRVNRAKELFVSMESNRCMHDVFSYSIL--INGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~ 420 (470)
..|++++|...+++..+.. +.+...+..+ +..+...|++++|++.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777776666543 2244444333 333556677777777766543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-07 Score=70.40 Aligned_cols=94 Identities=16% Similarity=0.069 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
+......|.+.|++++|+..|++.++..+. +...|..+..++.+.|++++|+..+++.++.+ +.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 334444444555555555555554444322 44444444555555555555555555444432 2244445555555555
Q ss_pred cCChhHHHHHHHHHHH
Q 036577 406 NKEIEGALSLYSEMLS 421 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~ 421 (470)
.|++++|++.|++.++
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-08 Score=78.66 Aligned_cols=99 Identities=7% Similarity=-0.079 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++.++.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 45566666666666677777777776666654 4456666666666666666666666666666643 334556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 036577 186 GLCAESRIMEAAALFTKLKAF 206 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~ 206 (470)
+|...|++++|+..|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.4e-08 Score=77.70 Aligned_cols=110 Identities=11% Similarity=0.018 Sum_probs=89.6
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036577 93 IFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 172 (470)
Q Consensus 93 ~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 172 (470)
.|+.++...|. +...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++.++..
T Consensus 9 ~~~~al~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEISSD--TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCCHh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45666665554 67778888888999999999999999888765 5678888888888999999999999999888764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036577 173 FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAF 206 (470)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (470)
+.+...+..+..+|...|++++|...|++..+.
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 446678888888899999999999999888764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.79 E-value=8e-08 Score=75.54 Aligned_cols=98 Identities=10% Similarity=0.056 Sum_probs=71.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036577 323 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILING 402 (470)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 402 (470)
...+..+...+.+.|++++|...|+++++..+. +...|..+..+|...|++++|...|++..+.. +.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 445666677777777777777777777776544 66777777777777777777777777777654 3356677777777
Q ss_pred HHHcCChhHHHHHHHHHHHC
Q 036577 403 YCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~ 422 (470)
|...|++++|+..|++.++.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-06 Score=75.35 Aligned_cols=169 Identities=8% Similarity=-0.007 Sum_probs=83.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC---CCC--H
Q 036577 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI---NPN--V 288 (470)
Q Consensus 214 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~ 288 (470)
.+...+..+...|++++|.+.+++..+....... .......+..+...+...|++++|...+++...... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556667777777777777776654421000 000112233344555566677777777666654211 111 3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHH---C-CCCC--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CC-C
Q 036577 289 VTYNSLIHGFCYANDWNEAKCLLIEMMD---Q-GVQP--NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGV----RP-N 357 (470)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~-~ 357 (470)
.+++.+...|...|++++|...+++..+ . +..+ ...++..+..+|...|++++|...+++..+... .. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3555666666666666666666666542 1 1011 113455555555556666666655555543210 00 1
Q ss_pred HhHHHHHHHHHHcCCCHHHH-HHHHHH
Q 036577 358 AFVYNTLMDGFCLTGRVNRA-KELFVS 383 (470)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A-~~~~~~ 383 (470)
..+|..+..+|.+.|+.++| ...+++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33445555555555555555 444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.7e-08 Score=80.44 Aligned_cols=158 Identities=9% Similarity=-0.046 Sum_probs=118.4
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcC
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST----GLF-PDLYTYNILINCFCKMG 156 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g 156 (470)
+..|++++|.+.++.+.. .+. ....++..+...+...|++++|+..+++.... +.. ....++..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPA-TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STT-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC-ChH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 457899999996666544 332 36788999999999999999999999987662 211 23457888899999999
Q ss_pred CcchHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhc
Q 036577 157 RVSPGFVVLGRILRS----CFT--PDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCE-PN----VITYSTLINGLCRT 225 (470)
Q Consensus 157 ~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~ 225 (470)
++++|...+++..+. +-. ....++..+...+...|++++|...+++....... .+ ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999987763 211 12456888899999999999999999987643111 11 23457788889999
Q ss_pred CChHHHHHHHHHHHhc
Q 036577 226 GHTIVALNLFEEMANG 241 (470)
Q Consensus 226 g~~~~a~~~~~~~~~~ 241 (470)
|++++|.+.+++....
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999988754
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.7e-07 Score=78.06 Aligned_cols=189 Identities=8% Similarity=-0.064 Sum_probs=117.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCCcchHHHHHHHHHh------------CCC------
Q 036577 119 KNKHYDTVLSLFKRLNSTGLFPDLYTYNIL-------INCFCKMGRVSPGFVVLGRILR------------SCF------ 173 (470)
Q Consensus 119 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~~~~------------~~~------ 173 (470)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..+.+.+. .|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5788899999999988875 5567778777 4666666666666666555544 110
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCC
Q 036577 174 --TPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEP 251 (470)
Q Consensus 174 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (470)
..-...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-------d~ 167 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-------DK 167 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-------CH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-------Cc
Confidence 0002334456666777778888887777776543 333255555566777777777777776443211 11
Q ss_pred --CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 252 --NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN--VVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 252 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
....+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 123566667777777777777777777664322132 234455556666777777777777777665
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.77 E-value=9.5e-08 Score=79.50 Aligned_cols=157 Identities=10% Similarity=-0.025 Sum_probs=81.5
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHHcCC
Q 036577 264 CKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----GVQ-PNVVTFNVIMDELCKNGK 338 (470)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~ 338 (470)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +.. .....+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3456777777744444331 1224556666666666777777777776666541 111 123445555666666666
Q ss_pred HHHHHHHHHHHHHc----CCCC--CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcC
Q 036577 339 MDEASRLLDLMIQI----GVRP--NAFVYNTLMDGFCLTGRVNRAKELFVSMESN----RCMH-DVFSYSILINGYCKNK 407 (470)
Q Consensus 339 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g 407 (470)
+++|...+++..+. +..+ ....+..+...+...|++++|...+++.... +... ...++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 66666666665543 1011 1234555566666666666666666555421 1000 1223455555666666
Q ss_pred ChhHHHHHHHHHHH
Q 036577 408 EIEGALSLYSEMLS 421 (470)
Q Consensus 408 ~~~~A~~~~~~~~~ 421 (470)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.77 E-value=8.4e-08 Score=84.55 Aligned_cols=194 Identities=9% Similarity=-0.010 Sum_probs=115.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHH
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLI 184 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (470)
.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++.++.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356777888888888888888888888887764 4467788888888888888888888888887763 44677778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHH
Q 036577 185 KGLCAESRIMEAAALFTKLKAFGCEPN-VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGL 263 (470)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 263 (470)
.+|...|++++|+..|++..+.. |+ ...+...+....+. .++..... ..... .+.+......+...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~------~~~~~~i~~~l~~l- 146 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKRWNS-IEERR------IHQESELHSYLTRL- 146 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHHHHH-HHHTC------CCCCCHHHHHHHHH-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHHHHH-HHHHH------HhhhHHHHHHHHHH-
Confidence 88888888888888888776542 21 11111122111111 11111111 11111 23333333333222
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 036577 264 CKEGFVDKAKELFLKMKDENINPNV-VTYNSLIHGFCYA-NDWNEAKCLLIEMMD 316 (470)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~-~~~~~a~~~~~~~~~ 316 (470)
..|++++|++.++...+. .|+. .....+...+.+. +.+++|.++|.++.+
T Consensus 147 -~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 -IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp -HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 256777777777666654 2333 2223333333333 456666666665543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.77 E-value=9.2e-07 Score=78.41 Aligned_cols=123 Identities=11% Similarity=0.041 Sum_probs=54.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC---CC--HhHHHHHHHHHHcCCCHHHHHHHHHHHHH---CC-CCC--CHHHHHHHH
Q 036577 332 ELCKNGKMDEASRLLDLMIQIGVR---PN--AFVYNTLMDGFCLTGRVNRAKELFVSMES---NR-CMH--DVFSYSILI 400 (470)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-~~~--~~~~~~~l~ 400 (470)
.+...|++++|...+++..+.... +. ..+++.++..|...|++++|...+++..+ .. ..+ ...++..+.
T Consensus 124 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg 203 (293)
T 2qfc_A 124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA 203 (293)
T ss_dssp HHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHH
Confidence 344444555555555544432111 11 22444555555555555555555554431 10 000 113445555
Q ss_pred HHHHHcCChhHHHHHHHHHHHCC----CCC-CHhHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 036577 401 NGYCKNKEIEGALSLYSEMLSKG----IKP-DVVIYNTLFIGLFEIHQVERA-FKLFDEM 454 (470)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~m 454 (470)
.+|...|++++|+..+++.++.. ... -..+|..+...+...|++++| ...+++.
T Consensus 204 ~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 55555555555555555544321 000 133445555555555555555 4444444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.7e-08 Score=78.26 Aligned_cols=111 Identities=7% Similarity=-0.050 Sum_probs=85.2
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 036577 309 CLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
..++++.... +.+...+..+...+.+.|++++|...|+.++...+. +...|..+..++...|++++|...|++.+...
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3445554432 334556677778888889999999999888887544 77788888888888899999998888887764
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 389 CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+.+...|..+..+|...|++++|...|++.++.
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 346777888888888899999999888888764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.75 E-value=6e-07 Score=67.67 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
..+..+...+...|++++|...++++.+... .+...+..++..+...|++++|...++++.+.. +.+...+..+..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 4455555556666666666666666655432 245555566666666666666666666655542 33555666666666
Q ss_pred HHcCChhHHHHHHHHHHHC
Q 036577 404 CKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~ 422 (470)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 6666666666666666554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-08 Score=92.15 Aligned_cols=153 Identities=14% Similarity=0.036 Sum_probs=125.7
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------------HHHHHH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD---------------LYTYNI 147 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~---------------~~~~~~ 147 (470)
..+++++|+..|+......|. ....|..+...+.+.|++++|+..|++..+.. +.+ ...|..
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~--~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLE--QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHH
Confidence 345667777777766655443 67889999999999999999999999998874 233 588999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 036577 148 LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGH 227 (470)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 227 (470)
+..++.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.+.|+
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999874 5578899999999999999999999999998863 3456778888889999999
Q ss_pred hHHH-HHHHHHHHh
Q 036577 228 TIVA-LNLFEEMAN 240 (470)
Q Consensus 228 ~~~a-~~~~~~~~~ 240 (470)
.++| ...|+.|..
T Consensus 280 ~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 280 QLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 9888 446666543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.74 E-value=4.8e-08 Score=86.09 Aligned_cols=96 Identities=15% Similarity=-0.052 Sum_probs=54.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 036577 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYN 292 (470)
Q Consensus 213 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 292 (470)
..+..+...+...|++++|+..|++..... +.+...|..+..++.+.|++++|...+++..+.. +.+...+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 76 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHF 76 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 344455555555666666666666655543 3355555556666666666666666666555542 22445555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH
Q 036577 293 SLIHGFCYANDWNEAKCLLIEMMD 316 (470)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~ 316 (470)
.+..+|...|++++|...|++..+
T Consensus 77 ~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 77 FLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666666666666655544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-07 Score=70.03 Aligned_cols=118 Identities=10% Similarity=-0.007 Sum_probs=77.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036577 322 NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILIN 401 (470)
Q Consensus 322 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (470)
+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 4455666666777777777777777777665433 56667777777777777777777777776643 335667777777
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 036577 402 GYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH 442 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (470)
++...|++++|.+.|++..+.... +...+..+...+...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 777777777777777777654211 3345555555555544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-07 Score=77.18 Aligned_cols=121 Identities=8% Similarity=0.100 Sum_probs=80.7
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHcCCCH--H
Q 036577 299 CYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG-FCLTGRV--N 375 (470)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 375 (470)
...|++++|...+++..+.. +.+...+..+...|...|++++|...++++.+.... +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 34566677777777666553 445666777777777777777777777777766433 56666666666 6677777 7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 376 RAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+|...++.+.+.. +.+...+..+..+|...|++++|...|+++.+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777776653 335667777777777778888888877777765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.73 E-value=8.3e-07 Score=66.89 Aligned_cols=97 Identities=18% Similarity=0.257 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDEL 333 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 333 (470)
..+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444455555555555555555544331 1233444444444444444444444444444332 22333444444444
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 036577 334 CKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~ 352 (470)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 4444444444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.3e-07 Score=70.15 Aligned_cols=119 Identities=8% Similarity=-0.026 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHH
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLI 184 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (470)
.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+..++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 467788889999999999999999999988764 5578888889999999999999999999988864 45678888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 036577 185 KGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTG 226 (470)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 226 (470)
.++...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 99999999999999999988753 234555666666665544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=6.6e-07 Score=68.09 Aligned_cols=94 Identities=13% Similarity=0.071 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...++...+.. +.+...+..+..++..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 333334444444444444444444433211 33344444444444444444444444444332 2233444444444444
Q ss_pred cCChhHHHHHHHHHHH
Q 036577 406 NKEIEGALSLYSEMLS 421 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~ 421 (470)
.|++++|...|++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.71 E-value=4.2e-07 Score=82.28 Aligned_cols=124 Identities=6% Similarity=-0.090 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN--------------VVTFNVIMDELCKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 352 (470)
+...+..+...|.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..++++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555666666666666666666666665431111 244444555555555555555555555544
Q ss_pred CCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q 036577 353 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGA 412 (470)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 412 (470)
.+. +...|..+..+|...|++++|...|++.++.. +.+...+..+..++.+.|+.++|
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 322 44444455555555555555555555544432 22444444455555555554444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=4.9e-07 Score=68.82 Aligned_cols=120 Identities=13% Similarity=-0.002 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMD 366 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 366 (470)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.... +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 55677888888999999999999999988764 456778888889999999999999999999887543 6778888999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 036577 367 GFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEI 409 (470)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (470)
.+...|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999888764 34777888888888877765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=8.8e-06 Score=72.26 Aligned_cols=167 Identities=10% Similarity=-0.020 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 036577 88 NEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKH----------YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (470)
Q Consensus 88 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 157 (470)
++|+.+++.++..+|. +..+|+.--.++...++ +++++.+++.+.... +.+..+|+.-..++...|+
T Consensus 47 ~eaL~~t~~~L~~nP~--~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 47 ESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp HHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHCch--hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCc
Confidence 5899999999999987 88889887766665554 688999999998875 6788899998888888884
Q ss_pred --cchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc---------
Q 036577 158 --VSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESR-IMEAAALFTKLKAFGCEPNVITYSTLINGLCRT--------- 225 (470)
Q Consensus 158 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--------- 225 (470)
+++++++++.+++.. +-|..+|+.-.-++...|. ++++++.++++.+.. +.|..+|+.....+...
T Consensus 124 ~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 124 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-----
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccc
Confidence 789999999999875 5688899888888888888 699999999999874 45777888776666554
Q ss_pred -----CChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhC
Q 036577 226 -----GHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKE 266 (470)
Q Consensus 226 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 266 (470)
+.++++++.+....... +-|...|+-+-..+.+.
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~-------P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTD-------PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHSS
T ss_pred cccchHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhc
Confidence 45788999999998876 66778887665555554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-05 Score=71.58 Aligned_cols=224 Identities=12% Similarity=0.037 Sum_probs=165.7
Q ss_pred HhcCChH-HHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCC----------HHHHHHHHHHHHhCCCCCCHHHH
Q 036577 223 CRTGHTI-VALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGF----------VDKAKELFLKMKDENINPNVVTY 291 (470)
Q Consensus 223 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~ 291 (470)
.+.|.+. +|+++++.+...+ +.+..+|+.--.++...+. +++++.+++.+.... +-+..+|
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW 111 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 111 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3455554 7888888888776 4556666665555544433 678899999888764 3478888
Q ss_pred HHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 036577 292 NSLIHGFCYAN--DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK-MDEASRLLDLMIQIGVRPNAFVYNTLMDGF 368 (470)
Q Consensus 292 ~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (470)
+.-..++.+.+ ++++++..++.+.+.. +-+...|+.-..++...|. ++++++.+..+++.++. |...|+.....+
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll 189 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 88777777777 4899999999999876 6678888888888888888 58999999999998766 788887776666
Q ss_pred HcC--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHHCC
Q 036577 369 CLT--------------GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN-----------KEIEGALSLYSEMLSKG 423 (470)
Q Consensus 369 ~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~ 423 (470)
.+. +.++++.+.+...+... +-|...|+-+-..+.+. +.++++++.++++.+.
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~- 267 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL- 267 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh-
Confidence 554 45788999998888764 45888887666555554 4578999999999965
Q ss_pred CCCCHhHHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCC
Q 036577 424 IKPDVVIYNTLFIG-----LFEIHQVERAFKLFDEMRRDGVAAD 462 (470)
Q Consensus 424 ~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~~~g~~p~ 462 (470)
.||. .|..+..+ ....|..+++..++.++++ +.|.
T Consensus 268 -~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~ 307 (331)
T 3dss_A 268 -EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPM 307 (331)
T ss_dssp -CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGG
T ss_pred -Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcc
Confidence 5554 34433222 2246888899999999987 5554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.9e-07 Score=72.84 Aligned_cols=110 Identities=10% Similarity=-0.013 Sum_probs=84.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036577 93 IFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 172 (470)
Q Consensus 93 ~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 172 (470)
.|+.++...|. +...+..+...+.+.|++++|+..|++....+ +.+...|..+..++...|++++|...|++.++..
T Consensus 6 ~l~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 6 TLAMLRGLSED--TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ---CCTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHcCCHH--HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44444454443 56677778888888899999999998888765 5677888888888888888988988888888764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036577 173 FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAF 206 (470)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (470)
+.+...+..+..+|...|++++|.+.|++..+.
T Consensus 83 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 83 -INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456677788888888888998888888887764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=9.5e-08 Score=79.34 Aligned_cols=130 Identities=12% Similarity=-0.005 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---------------HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN---------------AFVYNTLMDGFCLTGRVNRAKELFVSMESNRC 389 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 389 (470)
.+..+...+...|++++|...|++.++...... ...+..+..+|...|++++|...++..++..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 344444555555555555555555554322111 2566667777777777777777777776653
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 036577 390 MHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAF-KLFDEMRR 456 (470)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~ 456 (470)
+.+...+..+..+|...|++++|+..|++.++.... +...+..+..++...|+.+++. ..+..|..
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346677777777777777777777777777754322 4556666666666666666665 44555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.60 E-value=5e-07 Score=68.80 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR--CMHD----VFSYSI 398 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~ 398 (470)
.+..+...+.+.|++++|+..|++.++..+. +...|..+..+|...|++++|+..+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4455555566666666666666666555433 45555556666666666666666665554421 0111 124445
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 036577 399 LINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+..++...|++++|++.|++.++
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.9e-07 Score=70.43 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=80.9
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036577 322 NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILIN 401 (470)
Q Consensus 322 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (470)
+...+..+...+.+.|++++|...|+.+.+.++. +...|..+..++...|++++|...|++..... +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 3455666777888899999999999988887654 77888888888889999999999998888764 446777888888
Q ss_pred HHHHcCChhHHHHHHHHHHHC
Q 036577 402 GYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+|...|++++|...|++.++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999999888764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-06 Score=65.42 Aligned_cols=97 Identities=14% Similarity=-0.002 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
..+......+.+.|++++|...|++.++..+. +...|..+..++.+.|++++|...+++.++.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34555556666666666666666666665433 55666666666666677777776666666543 33566666666667
Q ss_pred HHcCChhHHHHHHHHHHHC
Q 036577 404 CKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~ 422 (470)
...|++++|+..|++.++.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777776666643
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.5e-07 Score=67.65 Aligned_cols=97 Identities=14% Similarity=0.072 Sum_probs=86.4
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 036577 358 AFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIG 437 (470)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 437 (470)
...+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..+++.++.... +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 4567788889999999999999999998864 458899999999999999999999999999976432 57789999999
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 036577 438 LFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 438 ~~~~g~~~~A~~~~~~m~~ 456 (470)
+...|++++|.+.|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 9999999999999999987
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-07 Score=88.01 Aligned_cols=126 Identities=10% Similarity=0.048 Sum_probs=104.0
Q ss_pred HHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 72 ERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151 (470)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 151 (470)
..+...|..+...|++++|++.|+++++..|. +..+|..+..++.+.|++++|++.+++..+.. +.+...+..+..+
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 83 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 83 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44567788889999999999999999999886 89999999999999999999999999999875 5678899999999
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 036577 152 FCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKG--LCAESRIMEAAALFT 201 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 201 (470)
|...|++++|.+.+++.++.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999998863 3344455556555 888899999999988
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-07 Score=77.34 Aligned_cols=95 Identities=16% Similarity=-0.018 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
..+..+..+|...|++++|...++..++.... +...+..+..++...|++++|...|++..+.. +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 34555555555566666666666655555322 45555555666666666666666666555442 22455555555555
Q ss_pred HHcCChhHHH-HHHHHHH
Q 036577 404 CKNKEIEGAL-SLYSEML 420 (470)
Q Consensus 404 ~~~g~~~~A~-~~~~~~~ 420 (470)
...++.+++. ..+..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 5555555554 3344443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=4.8e-06 Score=61.86 Aligned_cols=96 Identities=17% Similarity=0.106 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYC 404 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 404 (470)
.+..+...+...|++++|...++...+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444555555555666666655555554322 44555555555555666666666665555442 224555555666666
Q ss_pred HcCChhHHHHHHHHHHHC
Q 036577 405 KNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~ 422 (470)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666666666665543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.2e-06 Score=65.20 Aligned_cols=96 Identities=9% Similarity=0.068 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HhHHHH
Q 036577 360 VYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGI--KPD----VVIYNT 433 (470)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~ 433 (470)
.+..++..+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++.++... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44555666666666666666666665543 33556666666666666666666666666554211 111 124555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 036577 434 LFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 434 l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
+..++...|++++|++.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666666666666666666655
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-06 Score=64.59 Aligned_cols=99 Identities=8% Similarity=0.023 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC--CHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP--DAVTFNSL 183 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 183 (470)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++.++.. +. +..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 55667777777778888888888888777654 4466677777777777788888887777777653 33 56677777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhc
Q 036577 184 IKGLCAE-SRIMEAAALFTKLKAF 206 (470)
Q Consensus 184 ~~~~~~~-g~~~~a~~~~~~~~~~ 206 (470)
..++... |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777777 7788888777777765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=6.1e-06 Score=61.27 Aligned_cols=97 Identities=11% Similarity=0.012 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 036577 289 VTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 368 (470)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (470)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+..+. +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 344555555566666666666666665543 334555566666666666666666666666655332 455566666666
Q ss_pred HcCCCHHHHHHHHHHHHHC
Q 036577 369 CLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~ 387 (470)
...|++++|...++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666666554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-06 Score=69.84 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=88.9
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036577 321 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILI 400 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (470)
.+...+..+...+.+.|++++|+..|++.++.... +...|..+..+|...|++++|+..|++.++.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34567888889999999999999999999988654 78889999999999999999999999998875 44788999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHC
Q 036577 401 NGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.+|...|++++|+..|++.++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999875
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.4e-06 Score=67.43 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 036577 286 PNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLM 365 (470)
Q Consensus 286 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 365 (470)
.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++.++.... +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 356678888899999999999999999998875 557888999999999999999999999999988654 688899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCC
Q 036577 366 DGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
.++...|++++|...|++.++..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999987753
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=6.2e-06 Score=63.41 Aligned_cols=100 Identities=13% Similarity=-0.025 Sum_probs=67.6
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036577 321 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILI 400 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (470)
.+...+..+...+...|++++|...+...++..+. +...+..+..++...|++++|...++...+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 34556666666777777777777777776666433 56666777777777777777777777766653 33566777777
Q ss_pred HHHHHcCChhHHHHHHHHHHHC
Q 036577 401 NGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.+|...|++++|+..|++.++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777777777776643
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-06 Score=65.36 Aligned_cols=92 Identities=11% Similarity=-0.023 Sum_probs=51.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIH 442 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 442 (470)
.+...+.+.|++++|...|++.++.. +.+...|..+..++...|++++|+..|++.++.... +...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34445555566666666665555543 235555555666666666666666666665544221 3445555555666666
Q ss_pred CHHHHHHHHHHHHH
Q 036577 443 QVERAFKLFDEMRR 456 (470)
Q Consensus 443 ~~~~A~~~~~~m~~ 456 (470)
++++|+..+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-06 Score=80.70 Aligned_cols=198 Identities=10% Similarity=-0.060 Sum_probs=141.5
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCH---------------HHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHH--
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPV---------------SSFNILFGCLAKNKHYDTVLSLFKRLNST-GLFPDLY-- 143 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~-- 143 (470)
...|++++|++.|..+++..+...+. .++..++..|...|++++|.+.+..+.+. +..++..
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV 94 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH
Confidence 34679999999999999877652221 24778999999999999999999987653 1112221
Q ss_pred --HHHHHHHHHHhcCCcchHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----C
Q 036577 144 --TYNILINCFCKMGRVSPGFVVLGRILR----SCFTP-DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEP-----N 211 (470)
Q Consensus 144 --~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-----~ 211 (470)
+.+.+...+...|+.+.|.+++..... .+..+ -..++..+...|...|++++|..+++++...-... .
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 174 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL 174 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence 233344444567889999998887764 22222 25678889999999999999999999876431111 2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCC--CHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 036577 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEP--NTVTYTTIIDGLCKEGFVDKAKELFLKMKD 281 (470)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (470)
..++..++..|...|++++|..++++......... .++ -...+..+...+...|++++|...|.+...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY--CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC--CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45678889999999999999999998865432110 111 134566677778889999999988877654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.5e-06 Score=62.74 Aligned_cols=96 Identities=10% Similarity=-0.063 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHhHHHHHHH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP--DVVIYNTLFI 436 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~ 436 (470)
..+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|+..+++.++.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344445555555555555555555554432 2244555555555555555555555555555432 11 2445555555
Q ss_pred HHHhc-CCHHHHHHHHHHHHH
Q 036577 437 GLFEI-HQVERAFKLFDEMRR 456 (470)
Q Consensus 437 ~~~~~-g~~~~A~~~~~~m~~ 456 (470)
.+... |++++|.+.+++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 55555 566666665555554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.8e-06 Score=64.61 Aligned_cols=100 Identities=14% Similarity=0.052 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHH
Q 036577 105 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLI 184 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (470)
.++..|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+++.++.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467777777888888888888888888777664 4556777777777777777777777777777653 44566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 036577 185 KGLCAESRIMEAAALFTKLKAF 206 (470)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~ 206 (470)
.+|...|++++|+..|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777777777776653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.5e-06 Score=64.78 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRC--MHD----VFSYSI 398 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~ 398 (470)
.+..+...+...|++++|...++...+.... +...+..+...+...|++++|...+++...... .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4455555566666666666666666555322 455555666666666666666666666554320 111 555666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 036577 399 LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTL 434 (470)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 434 (470)
+..++...|++++|.+.|+++.+. .|+...+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 666667777777777777766654 3344444333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-05 Score=74.08 Aligned_cols=170 Identities=10% Similarity=-0.083 Sum_probs=87.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCC-CHH
Q 036577 215 YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE----NINP-NVV 289 (470)
Q Consensus 215 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~ 289 (470)
+..++..|...|++++|.+.+..+.......+. ......+.+.+...+...|+++.|.++++..... +..+ -..
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK-SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH-HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 445566666666666666666665443211000 0000112222333333456666666666655431 1111 234
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC--C--C-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-CC-C--H
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQ--G--V-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG--V-RP-N--A 358 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--~--~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~-~--~ 358 (470)
++..+...|...|++++|..++++.... + . +.....+..++..|...|++++|..+++...... . .| . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 5566666677777777777776665432 1 0 1113456666667777777777777766654321 1 11 1 2
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
..+..++..+...|++++|...|.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345555566666677777766665543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.39 E-value=3.5e-07 Score=86.56 Aligned_cols=151 Identities=9% Similarity=-0.006 Sum_probs=119.2
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------------HHHHHHH
Q 036577 84 TITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD---------------LYTYNIL 148 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~---------------~~~~~~l 148 (470)
.+++++|+..|+......+. ....|..+...+.+.|++++|+..|++..+.. +.+ ...|..+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~--~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nl 323 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLE--QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNL 323 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHH
Confidence 34566777777666554443 67789999999999999999999999998753 223 5789999
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 036577 149 INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHT 228 (470)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 228 (470)
..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++.
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874 5578899999999999999999999999998763 33567788888888888888
Q ss_pred HHHHH-HHHHHH
Q 036577 229 IVALN-LFEEMA 239 (470)
Q Consensus 229 ~~a~~-~~~~~~ 239 (470)
+++.+ .+..|.
T Consensus 402 ~~a~~~~~~~~f 413 (457)
T 1kt0_A 402 NERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 77653 444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=2e-05 Score=61.29 Aligned_cols=100 Identities=14% Similarity=0.091 Sum_probs=67.0
Q ss_pred CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHH
Q 036577 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPN----VVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTF 326 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 326 (470)
.+...+..+...+...|++++|.+.|++..+. .|+ ...+..+..+|...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35566677777777777777777777777664 244 4566666667777777777777777766653 3345566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036577 327 NVIMDELCKNGKMDEASRLLDLMIQIG 353 (470)
Q Consensus 327 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 353 (470)
..+..++...|++++|...+++..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 666666777777777777777766653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=4.6e-06 Score=62.75 Aligned_cols=95 Identities=12% Similarity=-0.051 Sum_probs=65.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
+..+...+.+.|++++|...++++++..+. +...|..+..++...|++++|+..|++.++.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 444556667777777777777777776543 66667777777777777777777777776653 3366677777777777
Q ss_pred cCChhHHHHHHHHHHHC
Q 036577 406 NKEIEGALSLYSEMLSK 422 (470)
Q Consensus 406 ~g~~~~A~~~~~~~~~~ 422 (470)
.|++++|+..+++.++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777643
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.7e-05 Score=61.73 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN----VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYN 362 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 362 (470)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...+++..+.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 3444555555555555555555555555544 222 334444444555555555555555554444222 344444
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMES 386 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~ 386 (470)
.+..++...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444445555555555444444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.38 E-value=4.9e-06 Score=63.13 Aligned_cols=108 Identities=10% Similarity=0.092 Sum_probs=57.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CC----HhHHHH
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR--PN----AFVYNT 363 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 363 (470)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+.... ++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34445555555555555555555555443 334455555555556666666666666655544221 11 445556
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036577 364 LMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILI 400 (470)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (470)
+..++...|++++|...|+...+.. |+...+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~ 119 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 6666666666666666666665542 3444444333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.36 E-value=3e-06 Score=67.09 Aligned_cols=132 Identities=14% Similarity=0.105 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVR-PN----AFVYNTLMDGFCLTGRVNRAKELFVSMESN----RCMH-DVF 394 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~ 394 (470)
++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555556666666666666555443111 01 135566666677777777777777665432 1001 144
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSK----GIKP-DVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.+..+..++...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667777777888888888887776642 1111 134566777888888888888888888764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.5e-05 Score=75.30 Aligned_cols=123 Identities=11% Similarity=-0.058 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036577 288 VVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPN---------------VVTFNVIMDELCKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 288 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 352 (470)
...+..+...|.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..++++++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4456666666777777777777777766542 111 345555555555666666666666655555
Q ss_pred CCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 036577 353 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGAL 413 (470)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 413 (470)
... +...|..+..+|...|++++|...|++.++.. +.+...+..+..++.+.|+.+++.
T Consensus 347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 433 45555555555555566666665555555542 224445555555555555555444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.6e-06 Score=64.93 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=65.9
Q ss_pred cCChhHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 036577 84 TITPNEAFCIFDYMLNMRPS-PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGF 162 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 162 (470)
.|++++|+..|+.+++.++. |.+..+|..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 46788888888888887411 1256778888888888889999988888888765 556778888888888888888888
Q ss_pred HHHHHHHhC
Q 036577 163 VVLGRILRS 171 (470)
Q Consensus 163 ~~~~~~~~~ 171 (470)
..+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.27 E-value=8.5e-06 Score=64.43 Aligned_cols=137 Identities=13% Similarity=0.017 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCC
Q 036577 178 VTFNSLIKGLCAESRIMEAAALFTKLKAFGCE-PN----VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPN 252 (470)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (470)
.++..+...+...|++++|+..+++..+.... .+ ..++..+...+...|++++|.+.+++........+. ....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-RAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-cHHH
Confidence 45666777777778888887777776543110 01 135666777777888888888888776653210000 0111
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036577 253 TVTYTTIIDGLCKEGFVDKAKELFLKMKDE----NIN-PNVVTYNSLIHGFCYANDWNEAKCLLIEMM 315 (470)
Q Consensus 253 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (470)
...+..+...+...|++++|.+.+++.... +.. .....+..+...+...|++++|...+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345666666777777777777777665432 100 012234444444555555555555554443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-05 Score=76.76 Aligned_cols=173 Identities=10% Similarity=-0.017 Sum_probs=146.3
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 87 PNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKH----------YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (470)
Q Consensus 87 ~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 156 (470)
-++|++.++.++..+|. +..+|+.--.++.+.|+ ++++++.++.+.+.. +-+..+|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~--~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCch--hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 47899999999999987 89999998888888877 999999999999876 678889999999999999
Q ss_pred --CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc--------
Q 036577 157 --RVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAES-RIMEAAALFTKLKAFGCEPNVITYSTLINGLCRT-------- 225 (470)
Q Consensus 157 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-------- 225 (470)
+++++++.++++++.. +-+..+|+.-.-.+.+.| .++++++.++++.+.. +.|..+|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 6699999999999975 558889999888888889 8999999999998764 44778888877776653
Q ss_pred ------CChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHH
Q 036577 226 ------GHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDK 271 (470)
Q Consensus 226 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 271 (470)
+.++++++.++++...+ +-+...|..+-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-------P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-------PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-------SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-------CCCccHHHHHHHHHhcCCCccc
Confidence 55789999999998876 6678888888888877776444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.26 E-value=3e-06 Score=80.57 Aligned_cols=117 Identities=13% Similarity=0.055 Sum_probs=53.1
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHH
Q 036577 298 FCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 377 (470)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 377 (470)
+.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|...+++..+.... +...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 444555555555555555442 233445555555555555555555555555554322 344455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCChhHHHHHHH
Q 036577 378 KELFVSMESNRCMHDVFSYSILING--YCKNKEIEGALSLYS 417 (470)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 417 (470)
.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555544432 1122233333333 444455555555444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.2e-05 Score=58.57 Aligned_cols=93 Identities=16% Similarity=0.084 Sum_probs=57.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 036577 328 VIMDELCKNGKMDEASRLLDLMIQIGVRPNA---FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHD---VFSYSILIN 401 (470)
Q Consensus 328 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 401 (470)
.+...+...|++++|...++.+.+..+. +. ..+..+..++...|++++|...|+.+.+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3445566666677777666666665332 22 355566666666777777777776666543 122 455666666
Q ss_pred HHHHcCChhHHHHHHHHHHHC
Q 036577 402 GYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~ 422 (470)
++...|++++|...|+++++.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.24 E-value=6.5e-06 Score=65.56 Aligned_cols=103 Identities=14% Similarity=0.072 Sum_probs=80.6
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CC---------CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 323 VVTFNVIMDELCKNGKMDEASRLLDLMIQI--------GV---------RPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
...+......+.+.|++++|+..|...++. .. +.+...|..+..+|.+.|++++|...++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777888899999999999999988775 11 1134577788888888899999998888888
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 036577 386 SNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV 428 (470)
Q Consensus 386 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 428 (470)
+.. +.+...|..+..+|...|++++|+..|++.++. .|+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 764 447888888888888899999999888888865 4443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-05 Score=72.67 Aligned_cols=91 Identities=12% Similarity=-0.062 Sum_probs=65.6
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 036577 357 NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 436 (470)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 436 (470)
+...|..+..+|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|++.|+++++.... +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45667777788888888888888888887754 346777888888888888888888888888765322 4556666666
Q ss_pred HHHhcCCHHHHHH
Q 036577 437 GLFEIHQVERAFK 449 (470)
Q Consensus 437 ~~~~~g~~~~A~~ 449 (470)
.+...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766676666644
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.23 E-value=6.6e-05 Score=56.76 Aligned_cols=92 Identities=9% Similarity=0.038 Sum_probs=50.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHH
Q 036577 294 LIHGFCYANDWNEAKCLLIEMMDQGVQPNV---VTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN---AFVYNTLMDG 367 (470)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 367 (470)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...++.+.+..+. + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3444555566666666665555542 1122 34455555566666666666666666555332 2 3445555666
Q ss_pred HHcCCCHHHHHHHHHHHHHC
Q 036577 368 FCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~ 387 (470)
+...|++++|...|+.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.1e-05 Score=61.54 Aligned_cols=101 Identities=12% Similarity=0.071 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--------C---------CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036577 287 NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ--------G---------VQPNVVTFNVIMDELCKNGKMDEASRLLDLM 349 (470)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 349 (470)
....+......+.+.|++++|+..|.+.++. . .+.+...|..+..+|.+.|++++|+..++.+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3556778888899999999999999998765 1 0223467888889999999999999999999
Q ss_pred HHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 036577 350 IQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
++.++. +...|..+..+|...|++++|...|+......
T Consensus 90 l~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 90 LKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 988644 78889999999999999999999999988863
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.17 E-value=2.4e-05 Score=71.54 Aligned_cols=91 Identities=12% Similarity=-0.087 Sum_probs=65.9
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036577 322 NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILIN 401 (470)
Q Consensus 322 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (470)
+...|..+..+|.+.|++++|+..++++++.... +...+..+..+|...|++++|...|++..+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456777777788888888888888888876543 56777778888888888888888888877653 336667777777
Q ss_pred HHHHcCChhHHHH
Q 036577 402 GYCKNKEIEGALS 414 (470)
Q Consensus 402 ~~~~~g~~~~A~~ 414 (470)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7776666666554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.15 E-value=6e-06 Score=61.65 Aligned_cols=87 Identities=10% Similarity=-0.041 Sum_probs=47.9
Q ss_pred cCCcchHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 036577 155 MGRVSPGFVVLGRILRSC--FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVAL 232 (470)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~ 232 (470)
.|++++|+..|++.++.+ -+.+..++..+..+|...|++++|+..|++..+.. +-+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455566666666665542 12234555666666666666666666666665542 223455556666666666666666
Q ss_pred HHHHHHHhcC
Q 036577 233 NLFEEMANGN 242 (470)
Q Consensus 233 ~~~~~~~~~~ 242 (470)
..+++.....
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 6666665543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00013 Score=56.07 Aligned_cols=110 Identities=14% Similarity=0.025 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHH
Q 036577 338 KMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK----NKEIEGAL 413 (470)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 413 (470)
++++|...|++..+.|. ++.. +...|...+.+++|.+.|++..+.+ +...+..+...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34455555555555441 1221 4444444445555555555555543 44455555555554 45555555
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 036577 414 SLYSEMLSKGIKPDVVIYNTLFIGLFE----IHQVERAFKLFDEMRRDG 458 (470)
Q Consensus 414 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 458 (470)
++|++..+.| +...+..|...|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555442 34444445555554 455555555555555544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.13 E-value=4e-05 Score=59.61 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC-----CCCCC-HhHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSK-----GIKPD-VVIY----NTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777777777777777777653 11444 3466 7777888888888888888888764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00017 Score=69.88 Aligned_cols=154 Identities=6% Similarity=0.007 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC
Q 036577 303 DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGK----------MDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG 372 (470)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 372 (470)
..++|++.++++.+.. +-+...|+.--.++...|+ +++++..++.+.+..++ +..+|+.-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 3456777777777664 4455566666556666665 78888888888887766 7778887777777888
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc--------
Q 036577 373 --RVNRAKELFVSMESNRCMHDVFSYSILINGYCKNK-EIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEI-------- 441 (470)
Q Consensus 373 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 441 (470)
+++++.+.++++.+.+ +-|..+|+.-..++.+.| .++++++.++++++..+. |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6688888888888765 447888888888888888 788888888888876544 677888777766653
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCC
Q 036577 442 ------HQVERAFKLFDEMRRDGVAAD 462 (470)
Q Consensus 442 ------g~~~~A~~~~~~m~~~g~~p~ 462 (470)
+.++++.+++++++. +.|+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~--~~P~ 224 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF--TDPN 224 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH--HCSS
T ss_pred cccccHHHHHHHHHHHHHHHh--hCCC
Confidence 557888888888876 4454
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.1e-06 Score=75.76 Aligned_cols=149 Identities=11% Similarity=0.070 Sum_probs=74.1
Q ss_pred HHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 72 ERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151 (470)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 151 (470)
..+...|..+...|++++|+..|+.++...|. +. .+...++++++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~--~~--------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD--DF--------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH--HH--------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc--ch--------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 34555566677778888888888887776543 21 1112233333322211 1267777778
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH-HHhcCChHH
Q 036577 152 FCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLING-LCRTGHTIV 230 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~g~~~~ 230 (470)
+.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877753 4466777788888888888888888888876542 2234444444444 234456677
Q ss_pred HHHHHHHHHhcC
Q 036577 231 ALNLFEEMANGN 242 (470)
Q Consensus 231 a~~~~~~~~~~~ 242 (470)
+.+.|..+....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 777777776654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.2e-05 Score=74.22 Aligned_cols=124 Identities=10% Similarity=0.006 Sum_probs=74.8
Q ss_pred HHHcCCHHHHHHHHHHHHHc-----CCC-C-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----C--CCCCHHHHHH
Q 036577 333 LCKNGKMDEASRLLDLMIQI-----GVR-P-NAFVYNTLMDGFCLTGRVNRAKELFVSMESN-----R--CMHDVFSYSI 398 (470)
Q Consensus 333 ~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~ 398 (470)
+...|++++|..++++.++. |.. | ...+++.|+.+|...|++++|+.++++.++. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777666543 111 1 2345667777777777777777777665431 1 1124555677
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH-----CCC-CCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 399 LINGYCKNKEIEGALSLYSEMLS-----KGI-KPDV-VIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
|...|...|++++|..++++.++ .|. .|+. .+...+..++...|.+++|..++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776653 122 1222 2444555666677777777777777764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.4e-05 Score=72.22 Aligned_cols=60 Identities=17% Similarity=0.099 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 325 TFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 325 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
.|..+..+|.+.|++++|+..+++.++.... +...|..+..+|...|++++|...|++..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444555555555555544444322 34444444444444444444444444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.07 E-value=7.5e-05 Score=58.05 Aligned_cols=95 Identities=11% Similarity=-0.033 Sum_probs=69.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------C-----HhHHHHHHHHHHcCCCHHHHHHHHHHHHHC-------
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRP------N-----AFVYNTLMDGFCLTGRVNRAKELFVSMESN------- 387 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 387 (470)
+......+.+.|++++|+..|++.++..+.. + ...|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4445555666677777777777766653321 2 237888888888888888888888888774
Q ss_pred CCCCCHHHH----HHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 388 RCMHDVFSY----SILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 388 ~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+ +.+...| .....++...|++++|+..|++.++
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3 2366677 8889999999999999999998875
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00019 Score=55.11 Aligned_cols=110 Identities=11% Similarity=-0.008 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----CCCHHHHH
Q 036577 303 DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAK 378 (470)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 378 (470)
++++|...|++..+.| .++.. +...|...+..++|...|++..+.| +...+..|...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666665 33322 5555555566666777777766653 45566666666665 66777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCC
Q 036577 379 ELFVSMESNRCMHDVFSYSILINGYCK----NKEIEGALSLYSEMLSKG 423 (470)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 423 (470)
..|++..+.+ +...+..|...|.. .+++++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777777665 56666777777776 677777777777777664
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.6e-05 Score=73.69 Aligned_cols=126 Identities=9% Similarity=-0.021 Sum_probs=95.3
Q ss_pred HHHccCCHHHHHHHHHHHHHC-----C-CCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC-C-CHhHHH
Q 036577 297 GFCYANDWNEAKCLLIEMMDQ-----G-VQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQI-----GVR-P-NAFVYN 362 (470)
Q Consensus 297 ~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~ 362 (470)
.+...|++++|+.++++.++. | -.| ...+++.+..+|...|++++|..++++.++. |.. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999887653 1 112 2457888999999999999999999887653 322 2 246788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH-----CC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMES-----NR--CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.|...|...|++++|+.++++..+ .| .+....+.+.+..++...|.+++|..++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988754 23 1224455677778888899999999999998763
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.3e-05 Score=57.26 Aligned_cols=80 Identities=11% Similarity=-0.019 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 036577 88 NEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGR 167 (470)
Q Consensus 88 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (470)
++|+..|+.+++..|. +...|..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQGTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3577788888877765 77788888888888888888888888877764 45566777777777777777777777777
Q ss_pred HHh
Q 036577 168 ILR 170 (470)
Q Consensus 168 ~~~ 170 (470)
.++
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=9.6e-06 Score=59.62 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=53.5
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-------Hh
Q 036577 357 NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD-------VV 429 (470)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~ 429 (470)
+...+..+...+...|++++|...|++.++.. +.+...|..+..++...|++++|++.+++.++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34456666666777777777777777666543 335666777777777777777777777777644 333 33
Q ss_pred HHHHHHHHHHhcCCHHHHH
Q 036577 430 IYNTLFIGLFEIHQVERAF 448 (470)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~ 448 (470)
.+..+..++...|+.++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHhHhhhH
Confidence 4444444454444444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=4.5e-05 Score=59.18 Aligned_cols=84 Identities=6% Similarity=0.001 Sum_probs=65.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChH----------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYD----------TVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 154 (470)
+.+++|++.|+..++.+|. ++..|..+..++...++++ +|+..|++.++.+ +.+..+|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 4689999999999999987 8999999999998887764 7888888877765 5566777778777776
Q ss_pred cC-----------CcchHHHHHHHHHhC
Q 036577 155 MG-----------RVSPGFVVLGRILRS 171 (470)
Q Consensus 155 ~g-----------~~~~a~~~~~~~~~~ 171 (470)
.| ++++|.+.|++.++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 64 566666666666654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=2.3e-05 Score=60.82 Aligned_cols=87 Identities=7% Similarity=-0.080 Sum_probs=59.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 334 CKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRV----------NRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
.+.+.+++|...++..++..+. +...|..+..++...+++ ++|+..|++.++.+ +.+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 4556677888888888777654 777777777777776654 47777777776654 33666777777777
Q ss_pred HHcC-----------ChhHHHHHHHHHHHC
Q 036577 404 CKNK-----------EIEGALSLYSEMLSK 422 (470)
Q Consensus 404 ~~~g-----------~~~~A~~~~~~~~~~ 422 (470)
...| ++++|++.|++.++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 6653 677777777777654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.84 E-value=2.9e-05 Score=56.90 Aligned_cols=93 Identities=13% Similarity=-0.017 Sum_probs=58.6
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC------HHHH
Q 036577 323 VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHD------VFSY 396 (470)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~ 396 (470)
...+..+...+...|++++|...+++.++..+. +...+..+..++...|++++|...+++.++.. +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 445566666667777777777777777666433 56666677777777777777777777776653 122 4455
Q ss_pred HHHHHHHHHcCChhHHHHHHH
Q 036577 397 SILINGYCKNKEIEGALSLYS 417 (470)
Q Consensus 397 ~~l~~~~~~~g~~~~A~~~~~ 417 (470)
..+..++...|+.+.|+..++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 556666666666665554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.84 E-value=7.8e-05 Score=55.17 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 036577 341 EASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEML 420 (470)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 420 (470)
+|...+++..+..+. +...+..+...+...|++++|...|++.++.. +.+...|..+..+|...|++++|...|++.+
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555665555432 55666666666666667777766666666543 3355666666666777777777777766665
Q ss_pred H
Q 036577 421 S 421 (470)
Q Consensus 421 ~ 421 (470)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00019 Score=50.14 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036577 107 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKG 186 (470)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (470)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4556666666777777777777777766553 3455566666666666666666666666666542 3344555555544
Q ss_pred HHh
Q 036577 187 LCA 189 (470)
Q Consensus 187 ~~~ 189 (470)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00034 Score=48.79 Aligned_cols=79 Identities=15% Similarity=0.139 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGL 438 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (470)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 344455555555555555555555555432 22455555555556666666666666665554321 1333444444444
Q ss_pred H
Q 036577 439 F 439 (470)
Q Consensus 439 ~ 439 (470)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0006 Score=60.81 Aligned_cols=70 Identities=9% Similarity=-0.122 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 036577 392 DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADTWT 465 (470)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 465 (470)
+..+|..+...+...|++++|...+++++..+ |+...|..+...+...|++++|.+.+++... +.|...|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t 345 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcCh
Confidence 45555555444444555555555555555442 4444444444555555555555555555554 3444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00046 Score=49.44 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=53.3
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 357 NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+...+..+..+|...|++++|...|++.++.. +.+...|..+..+|...|++++|++.|++.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56778888888888999999999998888764 336778888888899999999999888887653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00039 Score=49.84 Aligned_cols=64 Identities=17% Similarity=0.104 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 170 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 170 (470)
++.+|..+..++.+.|++++|+..|++..+.+ +.+...|..+..+|...|++++|.+.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677777777777777777777777776654 44555666777777777777777777766654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0062 Score=54.35 Aligned_cols=135 Identities=7% Similarity=-0.048 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHh--c---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCcc-h-H---HHHHHHHHh-
Q 036577 105 PPVSSFNILFGCLAK--N---KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK---MGRVS-P-G---FVVLGRILR- 170 (470)
Q Consensus 105 ~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~-~-a---~~~~~~~~~- 170 (470)
.+..+|...+++... . .+..+|+.+|++..+.. +.....|..+..+|.. .+... . . ...++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 477888888876543 2 34578999999999874 4445666655554432 11111 1 1 111222111
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 171 SCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
...+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++....+
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1225678888888888888899999999999999875 777777788889999999999999999998864
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00097 Score=61.89 Aligned_cols=85 Identities=9% Similarity=-0.015 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----C-CCCCH-hHHHHHHH
Q 036577 371 TGRVNRAKELFVSMESN---RCMH----DVFSYSILINGYCKNKEIEGALSLYSEMLSK-----G-IKPDV-VIYNTLFI 436 (470)
Q Consensus 371 ~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~l~~ 436 (470)
.|++++|+.++++.++. -..| ...+++.+..+|...|++++|+.++++.++- | -.|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666655431 1111 3455666677777777777777776665531 2 12332 36666777
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 036577 437 GLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 437 ~~~~~g~~~~A~~~~~~m~ 455 (470)
.|..+|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7777777777777777665
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0017 Score=49.83 Aligned_cols=81 Identities=12% Similarity=0.001 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChhHHHH
Q 036577 340 DEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTG---RVNRAKELFVSMESNRCMH--DVFSYSILINGYCKNKEIEGALS 414 (470)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 414 (470)
..+.+-|.+..+.+. ++..+...+..++++.+ +.+++..+++.+.+.. .| +...+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344445555544443 35555555666666655 4446666666665543 12 34444455555666666666666
Q ss_pred HHHHHHHC
Q 036577 415 LYSEMLSK 422 (470)
Q Consensus 415 ~~~~~~~~ 422 (470)
.++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66666643
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0011 Score=61.47 Aligned_cols=87 Identities=7% Similarity=-0.093 Sum_probs=65.2
Q ss_pred HcCCHHHHHHHHHHHHHc-----CCC-C-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHH
Q 036577 335 KNGKMDEASRLLDLMIQI-----GVR-P-NAFVYNTLMDGFCLTGRVNRAKELFVSMESN-----R--CMHDVFSYSILI 400 (470)
Q Consensus 335 ~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~ 400 (470)
..|++++|..++++..+. |.. | ...+++.|+.+|...|++++|+.++++.++. | .+....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888888887653 211 1 2467888899999999999999988887542 2 122566788899
Q ss_pred HHHHHcCChhHHHHHHHHHHH
Q 036577 401 NGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~ 421 (470)
..|...|++++|+.++++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0038 Score=58.03 Aligned_cols=87 Identities=9% Similarity=-0.073 Sum_probs=40.7
Q ss_pred HcCCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----C-CCCC-HhHHHHH
Q 036577 369 CLTGRVNRAKELFVSMESNR---CMH----DVFSYSILINGYCKNKEIEGALSLYSEMLSK-----G-IKPD-VVIYNTL 434 (470)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l 434 (470)
...|++++|+.++++..+.. ..| ...+++.++.+|...|++++|+.+++++++- | ..|+ ..+++.|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 34455555555555544321 011 2334455555555555555555555544421 1 1122 2245555
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 036577 435 FIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 435 ~~~~~~~g~~~~A~~~~~~m~ 455 (470)
...|..+|++++|..++++..
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHH
Confidence 555555555555555555554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0032 Score=58.48 Aligned_cols=98 Identities=12% Similarity=-0.043 Sum_probs=68.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC-CcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-----C--CCCCHHH
Q 036577 219 INGLCRTGHTIVALNLFEEMANGNGEI-GVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE-----N--INPNVVT 290 (470)
Q Consensus 219 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~ 290 (470)
+..+.+.|++++|+.++++........ +...+....+++.+..+|...|++++|+.+++++... | .+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667899999999999998764332 2222234567888888999999999999888877541 1 1122355
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 036577 291 YNSLIHGFCYANDWNEAKCLLIEMMD 316 (470)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (470)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67777777778888877777776653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0023 Score=45.41 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 365 MDGFCLTGRVNRAKELFVSMESNRCMHDVF-SYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+..+...|++++|...+++..+.. +.+.. .|..+..+|...|++++|++.|++.++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444555666666666666665543 22455 6666666666666666666666666654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.027 Score=57.26 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=22.4
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 153 CKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKL 203 (470)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 203 (470)
...|++++|.++.+. ..+...|..+...+.+.++++.|++.|.++
T Consensus 663 l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555544322 124445555555555555555555555544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0063 Score=42.64 Aligned_cols=66 Identities=9% Similarity=0.033 Sum_probs=47.3
Q ss_pred CCHhHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 356 PNAFVYNTLMDGFCLTGR---VNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.+...+..+..++...++ .++|..++++.++.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456667777777654444 678888887777764 446777777777788888888888888888765
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0036 Score=44.36 Aligned_cols=54 Identities=11% Similarity=0.163 Sum_probs=44.2
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVS-SFNILFGCLAKNKHYDTVLSLFKRLNSTG 137 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 137 (470)
...|++++|+..|+.+++..|. +.. .|..+..++...|++++|+..|++..+..
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPV--GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4567888888888888888776 677 88888888888888888888888887764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.2 Score=42.97 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHcC-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CChhH
Q 036577 339 MDEASRLLDLMIQIGVR-PNAFVYNTLMDGFCLT-----GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKN-KEIEG 411 (470)
Q Consensus 339 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 411 (470)
...|...+++.++.+.. .+...|..++..|.+. |+.++|.+.|++.++.+..-+..++....+.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 46778888888887432 1256888899999884 99999999999999875222478888888888884 99999
Q ss_pred HHHHHHHHHHCCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 412 ALSLYSEMLSKGIK--PDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 412 A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
|.+.+++.+..... |+....+. +.-++|..+++++.+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhHH
Confidence 99999999987665 55444433 234566666665543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.011 Score=42.55 Aligned_cols=67 Identities=12% Similarity=-0.009 Sum_probs=49.1
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 356 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESNR------CMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.+..-+..++..+...|++..|...|+...+.. ..+....+..+..++.+.|++++|+..++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345556677888888888888888887765531 1235667788888888888888888888888754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.027 Score=57.27 Aligned_cols=27 Identities=7% Similarity=-0.010 Sum_probs=13.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036577 323 VVTFNVIMDELCKNGKMDEASRLLDLM 349 (470)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 349 (470)
...|..+...+.+.++++.|.+.|..+
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344444444555555555555444444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.019 Score=40.16 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=40.3
Q ss_pred CCCHhHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 320 QPNVVTFNVIMDELCKNGK---MDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 320 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
+.+...+..+..++...++ .++|..++++.++.++. +......+...+.+.|++++|...|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455555555555544433 46666666666666544 5566666666666666666666666666654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.23 Score=39.01 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=20.5
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 154 KMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKL 203 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 203 (470)
+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444332 13444555555555555555555554444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.13 Score=40.49 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=96.8
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHH
Q 036577 296 HGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVN 375 (470)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 375 (470)
......|+++.|.++.+++ .+...|..+.......|+++-|.+.|.... | +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D---~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH------S---FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C---HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------C---HHHHHHHHHHhCCHH
Confidence 4456889999999987765 478899999999999999999999998875 2 344555566789988
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 376 RAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
+-.++-+.....| -++....++...|++++++++|.+. |-.|.... .....|-.+.|.++.+.+-
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~------~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYA------VAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHH------HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHH------HHHHcCcHHHHHHHHHHhC
Confidence 8887776666554 2566677788899999999998665 43332221 1223678888988887763
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.019 Score=42.28 Aligned_cols=64 Identities=16% Similarity=-0.010 Sum_probs=26.9
Q ss_pred CHhHHHHHHHHHHcCCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 357 NAFVYNTLMDGFCLTGRVNR---AKELFVSMESNRCMH--DVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+..+--.+..++.+..+... ++.+++.+...+ .| .....-.+.-++.+.|++++|.+.++.+++
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444444444444444333 444444444432 11 222223334444445555555555554443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.28 Score=36.28 Aligned_cols=66 Identities=12% Similarity=0.022 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 036577 393 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGV 459 (470)
Q Consensus 393 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (470)
....+..+..+...|+-|.-.+++..+.. +.+|++.....+..||.+.|+..+|.++++++-+.|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34445555555566666666666555432 2344555555566666666666666666666665554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.06 Score=41.19 Aligned_cols=82 Identities=11% Similarity=-0.033 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHcCCCHHHHH
Q 036577 304 WNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNG---KMDEASRLLDLMIQIGVRP--NAFVYNTLMDGFCLTGRVNRAK 378 (470)
Q Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 378 (470)
...+.+.|.+..+.+ +++..+...+..++++.+ +.++++.+++...+.+ .| ....+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344444555444444 345555555555555555 3445666666655543 12 2233334444555666666666
Q ss_pred HHHHHHHHC
Q 036577 379 ELFVSMESN 387 (470)
Q Consensus 379 ~~~~~~~~~ 387 (470)
++++.+++.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666665554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.33 Score=35.93 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 036577 215 YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENI 284 (470)
Q Consensus 215 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 284 (470)
....+..+...|.-++-.+++..+.... +|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n~-------~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKNN-------EVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhccC-------CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344444445555555555555543322 44455555555555555555555555555555443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.032 Score=47.76 Aligned_cols=90 Identities=16% Similarity=0.066 Sum_probs=56.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCc
Q 036577 85 ITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKN-----KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM-GRV 158 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~ 158 (470)
+....|..+++++++.+|.-.+-.+|..+...|.+. |+.++|.+.|++.++.+-.-+..++......++.. |+.
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 345667777777777665433355677777777663 77777777777776653111355666666666663 667
Q ss_pred chHHHHHHHHHhCCCC
Q 036577 159 SPGFVVLGRILRSCFT 174 (470)
Q Consensus 159 ~~a~~~~~~~~~~~~~ 174 (470)
+++.+.+++.++....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777665433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.13 Score=36.69 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=9.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 036577 327 NVIMDELCKNGKMDEASRLLDLMI 350 (470)
Q Consensus 327 ~~l~~~~~~~g~~~~a~~~~~~~~ 350 (470)
..+..++.+.|+++.|...++++.
T Consensus 50 ~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 50 DYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 333333333333333333333333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.081 Score=39.97 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=63.2
Q ss_pred CCCHhHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCCCH-hHHHHHHHH---H---HcCCCHHHHHHHHHHHHH
Q 036577 320 QPNVVTFNVIMDELCKNGKM------DEASRLLDLMIQIGVRPNA-FVYNTLMDG---F---CLTGRVNRAKELFVSMES 386 (470)
Q Consensus 320 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~-~~~~~l~~~---~---~~~g~~~~A~~~~~~~~~ 386 (470)
+-|..+|-..+....+.|+. ++..++|++.... ++|+. ..|...+.. | ...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44667777777777777777 7777777777765 33332 122222221 1 234677777777777755
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 036577 387 NRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK 425 (470)
Q Consensus 387 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 425 (470)
.+-.. ...|-...+.-.++|+++.|.+++.+.+..+.+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 42222 666666666666777777777777777765544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.37 Score=36.43 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036577 336 NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILIN 401 (470)
Q Consensus 336 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (470)
.++.++|.++|+.++..+-+ -...|......-.++|++..|.+++...+..+.. +.......+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~ 136 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR 136 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 47888888888888766333 3777777777778888888888888888887633 3444444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.69 E-value=4.3 Score=41.23 Aligned_cols=259 Identities=11% Similarity=0.070 Sum_probs=127.3
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCCcchHHHHH
Q 036577 149 INCFCKMGRVSPGFVVLGRILRSC--FTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGC-------EPNVITYSTLI 219 (470)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-------~~~~~~~~~l~ 219 (470)
.-+....|+.++++.+++..+..+ -.+....-..+.-+....|..+++..++.......- .+....-.++.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 344566777777777776655421 122233334444455555655566666665544210 01111223333
Q ss_pred HHHHhcCC-hHHHHHHHHHHHhcCCCCCcccCCCH--hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHH--
Q 036577 220 NGLCRTGH-TIVALNLFEEMANGNGEIGVVCEPNT--VTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSL-- 294 (470)
Q Consensus 220 ~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 294 (470)
-+++..|. -+++.+.+..+.... .+.. ..-..+...+.-.|+.+....++..+.+.. +..+...+
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd-------~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aal 530 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYND-------SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAV 530 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcC-------CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHH
Confidence 33333332 235555555555433 1111 112233344455667666677776665532 22222223
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcC
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFN---VIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLT 371 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (470)
.-++...|+.+.+..+++.+.... .|. .-|. ++..+|+..|+.....+++..+.... ..+..-...+.-++...
T Consensus 531 gLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 531 GLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLL 607 (963)
T ss_dssp HHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTS
T ss_pred HHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhcc
Confidence 333446677777777777766532 222 2222 23445667777766666777776542 22333333333344445
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHH
Q 036577 372 GRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEI-EGALSLYSEMLS 421 (470)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 421 (470)
|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+++..+..+..
T Consensus 608 g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 608 RDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 66666666665555443 34444334444444445543 466677777653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.43 Score=35.25 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 390 MHDVFSYSILINGYCKNKEI---EGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 390 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
.|+..+--.+.+++.+..+. .+++.++++..+.+..-....+..|.-++.+.|++++|+++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444455555554432 23455555554432111223444445555555555555555555554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.57 E-value=1 Score=33.68 Aligned_cols=67 Identities=9% Similarity=-0.044 Sum_probs=30.0
Q ss_pred CCHhHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 356 PNAFVYNTLMDGFCLTGR---VNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
|+..+--.+..++.+..+ ..+++.+++.+...+..-.....--+.-++.+.|++++|.+..+.+++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344444444444444443 2344455555444321112333333444555555555555555555543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=3.8 Score=39.78 Aligned_cols=115 Identities=6% Similarity=-0.093 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHH----HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 036577 338 KMDEASRLLDLMIQIGVRPNAFVY----NTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGAL 413 (470)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 413 (470)
+.+.|...+....+... .+.... ..++......+...++...+....... .+.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 67888888887765432 233222 222223334443455555555544432 33333444444455678888888
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 414 SLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 414 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
..|+.|..... ....-..-+..++...|+.++|..+|+.+.+
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888754211 1233344566777788888888888888764
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.34 E-value=2.1e-06 Score=77.80 Aligned_cols=210 Identities=12% Similarity=0.041 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
.+..|..|..+....++..+|++-|- + ..|+..|..++.+..+.|.+++-...+.-..+.. .+..+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 45578888888888888888877662 2 2355567888888888888888888777665542 23344457888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--------------cccCC
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIG--------------VVCEP 251 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~ 251 (470)
+|++.++..+.++.+ . .||..-...+.+-|...|.++.|.-+|..+.+-.+-.. -.-..
T Consensus 125 ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888766543322 2 26776777777777777777777666655533221000 00123
Q ss_pred CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 036577 252 NTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMD 331 (470)
Q Consensus 252 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 331 (470)
++.||--+..+|...+++.-|.-.--.+.-.. .-...++..|-..|.+++.+.+++...... .....+|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 45556666666666665555443332222210 011224445566666666666665554322 334555555555
Q ss_pred HHHHc
Q 036577 332 ELCKN 336 (470)
Q Consensus 332 ~~~~~ 336 (470)
.|++-
T Consensus 272 LYsKY 276 (624)
T 3lvg_A 272 LYSKF 276 (624)
T ss_dssp HHHSS
T ss_pred HHHhc
Confidence 55543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.29 E-value=5.2 Score=40.60 Aligned_cols=305 Identities=12% Similarity=0.033 Sum_probs=153.6
Q ss_pred HHHHHHHHHHhcCCcchH-HHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCcchHHHHH
Q 036577 144 TYNILINCFCKMGRVSPG-FVVL-GRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFG--CEPNVITYSTLI 219 (470)
Q Consensus 144 ~~~~li~~~~~~g~~~~a-~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~l~ 219 (470)
+-..+.+++...|--.+. +... +.+-+. .+....-....-+....|+.++++.+++.....+ -.+....-..+.
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAlla 418 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYG 418 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHH
Confidence 344566777777755443 2222 233332 2222233333445667788888888777765421 111222333444
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC-CCcccCCCHhhHHHHHHHHHhCCC-HHHHHHHHHHHHhCCCCCCHHHHH--HHH
Q 036577 220 NGLCRTGHTIVALNLFEEMANGNGE-IGVVCEPNTVTYTTIIDGLCKEGF-VDKAKELFLKMKDENINPNVVTYN--SLI 295 (470)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~--~li 295 (470)
-+....|...++..++......... .+....+....-..+.-+..-.|. -+++.+.+..+....- +...... +|.
T Consensus 419 LGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALG 497 (963)
T 4ady_A 419 LGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMG 497 (963)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHh
Confidence 5566667666777777665543220 000001222223333333333332 2355555555554321 1111122 233
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHH--HHHHHHHHcCCC
Q 036577 296 HGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVY--NTLMDGFCLTGR 373 (470)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~ 373 (470)
..+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+.... .|....- .++.-+|+..|+
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 34556677777777777766542 1122223333344557788888888888877641 2222221 234556778888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH-HHHHHHHH
Q 036577 374 VNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQV-ERAFKLFD 452 (470)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 452 (470)
.....+++..+.+.. ..++.....+.-++...|+.+.+.++++.+.+.+ .|...--..+.-+....|+. .++...+.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 877777888877642 2234434444445555777777777777665532 33333222233333333332 45666666
Q ss_pred HHH
Q 036577 453 EMR 455 (470)
Q Consensus 453 ~m~ 455 (470)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 665
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.91 E-value=1.9e-05 Score=71.75 Aligned_cols=264 Identities=11% Similarity=0.085 Sum_probs=167.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 036577 141 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLIN 220 (470)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 220 (470)
.+.+|..|..+..+.+++.+|++-|-+ ..|...|..++....+.|.+++-.+.+....+. ..+...-+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 345788899999898988888765532 235667888999999999999999988777654 345666678999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 036577 221 GLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCY 300 (470)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 300 (470)
+|++.++..+-.+++ ..||..-...+.+-|...|.++.|.-+|..+.. |.-|..++.+
T Consensus 125 ayAk~~rL~elEefl-------------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~ 182 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVH 182 (624)
T ss_dssp HHHTSCSSSTTTSTT-------------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSS
T ss_pred HHHhhCcHHHHHHHH-------------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHH
Confidence 999999866543321 256777778888899999999988888765543 3334455666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHH
Q 036577 301 ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKEL 380 (470)
Q Consensus 301 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 380 (470)
.|++..|.+.-++ ..++.||-.+-.+|...+.+..|...--.++-. +| -...++..|-..|.+++.+.+
T Consensus 183 L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsL 251 (624)
T 3lvg_A 183 LGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITM 251 (624)
T ss_dssp CSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTT
T ss_pred HHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHH
Confidence 6776666543222 335667777777777777776665544444322 11 122455566777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCC------CCHhHHHHHHHHHHhcCCHHHH
Q 036577 381 FVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK-GIK------PDVVIYNTLFIGLFEIHQVERA 447 (470)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~------p~~~~~~~l~~~~~~~g~~~~A 447 (470)
++.-.... ......|+-|.-.|++- ++++..+.++..-.+ +++ -....|.-++-.|.+-.+++.|
T Consensus 252 lEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 252 LEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 76655332 33666777777777664 345554444432211 111 0233455555555555555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.33 Score=44.31 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=28.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
.++..+...|+.+++...+..+.... +-+...|..+|.++.+.|+..+|++.|++.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444445555555555555544432 235555555555555555555555555544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.66 E-value=4.4 Score=37.55 Aligned_cols=94 Identities=14% Similarity=0.042 Sum_probs=49.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC--CCCCC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC--HhH
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQ--GVQPN---VVTFNVIMDELCKNGKMDEASRLLDLMIQ----IGVRPN--AFV 360 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~ 360 (470)
..|...|...|++.+|..++..+... +.... ...+...+..|...+++..|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555666666666666666665432 11111 23344455566666666666666666532 111111 223
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 036577 361 YNTLMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
+...+..+...+++.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555556666666666666665553
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.64 E-value=0.52 Score=34.62 Aligned_cols=67 Identities=10% Similarity=0.022 Sum_probs=29.4
Q ss_pred CCHhhHHHHHHHHHhCCCHHH---HHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 251 PNTVTYTTIIDGLCKEGFVDK---AKELFLKMKDENIN-PNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
++..+-..+..++.+..+... ++.+++.+...+.+ -.....-.+.-++.+.|+++.|.+.++.+++.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 444444455555555544333 55555554443210 01122223333444555555555555554444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.68 Score=45.83 Aligned_cols=53 Identities=19% Similarity=0.056 Sum_probs=30.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 036577 366 DGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEM 419 (470)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 419 (470)
+.+...|+++.|.++-++....- +-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33445566666666666655532 225566666666666666666666555543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.68 Score=45.85 Aligned_cols=54 Identities=17% Similarity=0.074 Sum_probs=46.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 400 INGYCKNKEIEGALSLYSEMLSKGIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
.+.|...|+++-|+++-++.... .|+ -.+|..|..+|...|+++.|+-.++.+-
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44566789999999999999865 454 6699999999999999999999998873
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.26 E-value=7.1 Score=36.18 Aligned_cols=195 Identities=11% Similarity=-0.016 Sum_probs=118.9
Q ss_pred cCChhHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hc
Q 036577 84 TITPNEAFCIFDYMLNM----RPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC----KM 155 (470)
Q Consensus 84 ~~~~~~A~~~f~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----~~ 155 (470)
.++++.|++-+-.+.+. ...+........++..|...|+++...+.+..+.+..-. .......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 35677787776555432 112245777888999999999999998888766544212 2233344444332 23
Q ss_pred CCcchHH--HHHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----cchHHHHHHHH
Q 036577 156 GRVSPGF--VVLGRILR--SC-FTP---DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPN-----VITYSTLINGL 222 (470)
Q Consensus 156 g~~~~a~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~ 222 (470)
...+... .+.+.+.. .| +-. .......|...|...|++.+|.+++..+...-...+ ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3322211 11111110 11 111 223456788999999999999999999864311122 23456677889
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCcccCCC--HhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 036577 223 CRTGHTIVALNLFEEMANGNGEIGVVCEPN--TVTYTTIIDGLCKEGFVDKAKELFLKMKD 281 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 281 (470)
...+++..|..++.++........ .+|+ ...+...+..+...+++.+|.+.|.++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~--~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNP--KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccC--CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999998743110000 1222 24566777788889999999888877754
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=1 Score=41.07 Aligned_cols=69 Identities=6% Similarity=0.012 Sum_probs=46.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHhHH
Q 036577 292 NSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ-----IGVRPNAFVY 361 (470)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 361 (470)
..++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+...+ .|+.|...+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345566667777777777777766553 55666777777777777777777777776543 3666666543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=90.67 E-value=7.1 Score=35.32 Aligned_cols=166 Identities=11% Similarity=-0.015 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHhHH--
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDE-NINP---NVVTYNSLIHGFCYA-NDWNEAKCLLIEMMDQGVQPNVVTF-- 326 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~-- 326 (470)
.....|...|.+.|+.++..+++...... +..+ .......++..+... +..+.-.++..+..+..- ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 35667888889999999888888776542 1111 233455677777654 334444444444443210 011122
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HhHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHH
Q 036577 327 ----NVIMDELCKNGKMDEASRLLDLMIQIGVRPN-----AFVYNTLMDGFCLTGRVNRAKELFVSMESN--RCMHDVFS 395 (470)
Q Consensus 327 ----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 395 (470)
..++..|...|++.+|..++..+.+.-...| ..++..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2577888899999999888888876422222 334556677788889999998888776432 11122222
Q ss_pred H----HHHHHHHH-HcCChhHHHHHHHHHH
Q 036577 396 Y----SILINGYC-KNKEIEGALSLYSEML 420 (470)
Q Consensus 396 ~----~~l~~~~~-~~g~~~~A~~~~~~~~ 420 (470)
- ..-+..+. ..+++.+|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 12223345 6788888887776654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.74 E-value=2.8 Score=32.33 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=27.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC-CCCCc-------chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 184 IKGLCAESRIMEAAALFTKLKAFG-CEPNV-------ITYSTLINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
++.+...|.++.|+-+.+.+.... ..++. .++..+.+++...|++..|...|++..+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 444455555555555555433221 11221 1334455556666666666666666433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.57 E-value=10 Score=40.09 Aligned_cols=146 Identities=10% Similarity=0.059 Sum_probs=93.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C----------------
Q 036577 294 LIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI----G---------------- 353 (470)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~---------------- 353 (470)
++..+...+.++.+.++..-. +.+...--.+..+|...|++++|...|.+.... +
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455556665555443221 334444455667888899999999998764211 0
Q ss_pred --CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 036577 354 --VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHD----VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 427 (470)
Q Consensus 354 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 427 (470)
...-..-|..++..+.+.|.++.+.++-+..++.....+ ...|..+..++...|++++|...+-.+-+...+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 001123467778888888999988888777665422222 225788899999999999999988877665433
Q ss_pred HhHHHHHHHHHHhcCCHHH
Q 036577 428 VVIYNTLFIGLFEIHQVER 446 (470)
Q Consensus 428 ~~~~~~l~~~~~~~g~~~~ 446 (470)
......|+..++..|..+.
T Consensus 971 ~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHhCCChhh
Confidence 4566677777776665544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.20 E-value=3.5 Score=31.82 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHH
Q 036577 394 FSYSILINGYCKNKEIEGALSLYSE 418 (470)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~ 418 (470)
..---+..||.+.|++++|+.+++.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 3334466677777777777777654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.97 E-value=9.8 Score=40.24 Aligned_cols=148 Identities=8% Similarity=0.010 Sum_probs=100.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----C---------------
Q 036577 258 TIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----G--------------- 318 (470)
Q Consensus 258 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~--------------- 318 (470)
.++..+.+.+.++.+.++..... .+...--.+..+|...|++++|...|.+.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 34555666677776666554332 24455556778899999999999999764210 0
Q ss_pred ---CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 036577 319 ---VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNA----FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMH 391 (470)
Q Consensus 319 ---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 391 (470)
...-..-|..++..+.+.+.++.+.++-...++....-+. ..|..+.+.+...|++++|...+-.+.... -
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~ 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--L 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--H
Confidence 0011234677888899999999999998888765332222 257888999999999999999988776653 2
Q ss_pred CHHHHHHHHHHHHHcCChhHH
Q 036577 392 DVFSYSILINGYCKNKEIEGA 412 (470)
Q Consensus 392 ~~~~~~~l~~~~~~~g~~~~A 412 (470)
-......++..++..|..+.-
T Consensus 970 r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhh
Confidence 456677777777766655443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.72 E-value=12 Score=31.64 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=40.2
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST 136 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 136 (470)
++.|++++|+.....-++..|. |...-..++..++-.|++++|..-++-..+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~--da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4567788888888777777776 7777777888888888888887777776654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.02 E-value=15 Score=32.01 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=47.1
Q ss_pred CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHCCCCCCHhHHH
Q 036577 251 PNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYA---NDWNEAKCLLIEMMDQGVQPNVVTFN 327 (470)
Q Consensus 251 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~ 327 (470)
-++.....+...|.+.|++.+|...|- .|-..+...+..++.-+... |...++ +... .
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~-~ 192 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFF-S 192 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHH-H
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHH-H
Confidence 467888889999999999999888773 11111344444444333332 322221 1111 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 036577 328 VIMDELCKNGKMDEASRLLDLMI 350 (470)
Q Consensus 328 ~l~~~~~~~g~~~~a~~~~~~~~ 350 (470)
..+--|.-.|+...|..+++...
T Consensus 193 RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 193 RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 22334556788888888887664
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.35 E-value=8.6 Score=35.43 Aligned_cols=99 Identities=7% Similarity=-0.066 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCcchHHH---
Q 036577 144 TYNILINCFCKMGRVSPGFVVLGRILRS--CFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGC-EPNVITYST--- 217 (470)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~--- 217 (470)
+...+...|.+.|+++.|.+.+.++... +...-...+-.+++.+...+++..+...++++...-. .++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 6677888899999999999999988763 3334466788888999999999999999888754311 122221111
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHhcC
Q 036577 218 -LINGLCRTGHTIVALNLFEEMANGN 242 (470)
Q Consensus 218 -l~~~~~~~g~~~~a~~~~~~~~~~~ 242 (470)
-+..+...+++.+|-+.|-+.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 1222345788999888888876554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.23 E-value=6.6 Score=27.30 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 036577 271 KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMM 315 (470)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (470)
+..+-++.+...++.|++.+..+.+++|.+.+|+..|.++|+-.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.19 E-value=6.7 Score=27.29 Aligned_cols=65 Identities=12% Similarity=0.210 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 036577 303 DWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGF 368 (470)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (470)
|.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-+..+- .....+|..+++-.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHHH
Confidence 455677777777778888899999999999999999999999998887653 22345676666543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.92 E-value=9.8 Score=28.08 Aligned_cols=68 Identities=9% Similarity=-0.044 Sum_probs=36.1
Q ss_pred CCCHhHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 355 RPNAFVYNTLMDGFCLTGR---VNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 355 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+..-....+--+.-++.+.|++++|.+..+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3444444445555555543 3345566665555431113444455555666666666666666666643
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.66 E-value=19 Score=31.26 Aligned_cols=167 Identities=15% Similarity=0.107 Sum_probs=89.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH----HHHHHHCCCCCCHhHHHHHH
Q 036577 255 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCL----LIEMMDQGVQPNVVTFNVIM 330 (470)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~ 330 (470)
.|.++..=|.+.+++++|++++..-.. .+.+.|++..|.++ ++-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344444556667777777777644322 23445555554443 34444556677776666666
Q ss_pred HHHHHcCCHH-HHHHHHHHHH----HcC--CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 331 DELCKNGKMD-EASRLLDLMI----QIG--VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 331 ~~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
..+......+ .=.++++.++ +.| ..-++.....+...|.+.|++.+|+..|- .+...+...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHH
Confidence 6655432211 1123333333 222 22366778888888888899888887763 11111344555554444
Q ss_pred HHc---CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 404 CKN---KEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 404 ~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
... |...++--++-+ .+--|.-.|+...|..+++...
T Consensus 176 ~~~~~~~~~~e~dlf~~R---------------aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTVAEFFSR---------------LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHHHHHHHH---------------HHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHHH---------------HHHHHHHhcCHHHHHHHHHHHH
Confidence 443 433332211111 1223445678888888877765
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.14 E-value=23 Score=31.03 Aligned_cols=168 Identities=11% Similarity=0.059 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH----HHHHHCCCCCCHhHHHHHH
Q 036577 255 TYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLL----IEMMDQGVQPNVVTFNVIM 330 (470)
Q Consensus 255 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~ 330 (470)
.|.++..=|.+.+++++|++++..-. ..+.+.|+...|.++- +-..+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34444555677888888888764432 1234445554444443 3344556677776666666
Q ss_pred HHHHHcCCHH-HHHHHHHHHH----HcC--CCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036577 331 DELCKNGKMD-EASRLLDLMI----QIG--VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGY 403 (470)
Q Consensus 331 ~~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 403 (470)
..+.....-+ .=..+.++++ +.| ..-|+.....+...|.+.+++.+|+..|- . +..+....+..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 6665544311 1122333332 222 23466777888899999999999988772 2 2223335665555554
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 404 CKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
...+...++--+ . ...+--|.-.|+...|..+++.+.+
T Consensus 178 ~~~~~~~e~dlf--------------i-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESHTAPLY--------------C-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGGGHHHH--------------H-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHH--------------H-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444432222111 1 1123345566788888887766653
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.76 E-value=12 Score=27.58 Aligned_cols=59 Identities=12% Similarity=0.200 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036577 271 KAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIM 330 (470)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 330 (470)
+..+-++.+...++.|++.+..+.+.+|-+.+|+..|.++|+-.+.+- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 455666666666777777777777777777777777777777766543 22233455444
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.39 E-value=14 Score=27.29 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036577 306 EAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 306 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 352 (470)
+..+-++.+...++.|++....+.+.+|.+.+++..|.++++-++.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44444555555555666666666666666666666666666665544
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.98 E-value=12 Score=34.49 Aligned_cols=99 Identities=13% Similarity=-0.016 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHhH--H
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDE--NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ---GVQPNVVT--F 326 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 326 (470)
.+...+...|.+.|++++|.+.|.++... +...-...+-.+++.+...+++..+...+.++... +..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 46778999999999999999999999874 33345667888899999999999999999887542 22232211 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036577 327 NVIMDELCKNGKMDEASRLLDLMIQI 352 (470)
Q Consensus 327 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 352 (470)
..-+..+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122344578899998888776654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.85 E-value=29 Score=30.49 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=85.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH----HHHHHHHcCCCCCHhHHHHHH
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASR----LLDLMIQIGVRPNAFVYNTLM 365 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~----~~~~~~~~~~~~~~~~~~~l~ 365 (470)
+|.++..-|.+.+++++|++++..-. ..+.+.|+...|.+ +++-..+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455566888999999999875432 22334455444333 345555567778887777777
Q ss_pred HHHHcCCCHH-HHHHHHHHHHH----CCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036577 366 DGFCLTGRVN-RAKELFVSMES----NRC--MHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGL 438 (470)
Q Consensus 366 ~~~~~~g~~~-~A~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (470)
..+.....-+ .=..+.+++++ .+. .-+......+...|.+.+++.+|...|- . |-.+....+..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 7776655321 11233333332 221 1277888889999999999999998872 2 4454556776666666
Q ss_pred HhcCCHHHH
Q 036577 439 FEIHQVERA 447 (470)
Q Consensus 439 ~~~g~~~~A 447 (470)
...+...++
T Consensus 178 ~~~~~~~e~ 186 (336)
T 3lpz_A 178 YKQDESHTA 186 (336)
T ss_dssp HHTSCGGGH
T ss_pred HHhcCCccH
Confidence 665544443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.7 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.69 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.42 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.39 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.37 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.36 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.36 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.33 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.29 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.22 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.19 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.18 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.85 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.8 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.78 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.78 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.78 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.77 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.72 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.7 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.68 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.64 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.59 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.54 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.5 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.49 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.46 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.34 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.33 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.28 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.28 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.21 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.19 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.16 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.16 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.13 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.08 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.07 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.03 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.01 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.0 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.99 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.97 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.96 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.87 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.86 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.82 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.45 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.41 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.19 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.0 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.95 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.83 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.87 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.81 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.49 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.66 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.87 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.16 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.9 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.1 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=9.6e-24 Score=194.58 Aligned_cols=363 Identities=15% Similarity=0.061 Sum_probs=295.6
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (470)
+...|++++|++.|+.+++..|. ++.++..+..++.+.|++++|+..|++..+.. +.+..++..+..++.+.|++++
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 34678999999999999999887 88999999999999999999999999998875 5678899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 240 (470)
|...+....+.. +.+..............+....+........... .................+....+...+.....
T Consensus 86 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhc
Confidence 999999998864 4455555566666666666666666666555442 23445555666667778888888888888877
Q ss_pred cCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 036577 241 GNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQ 320 (470)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (470)
.. +.+...+..+...+...|++++|...++...... +-+...+..+...+...|++++|...+.+..... +
T Consensus 164 ~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 234 (388)
T d1w3ba_ 164 TQ-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred cC-------cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-h
Confidence 65 5567788888888899999999999998887753 3366788888889999999999999998888765 5
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036577 321 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILI 400 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (470)
.+...+..+...+.+.|++++|...++++.+..+. +..++..+...+...|++++|...++...... +.+...+..+.
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 312 (388)
T d1w3ba_ 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHH
Confidence 56677888888899999999999999998887544 67788888899999999999999998887754 55788888889
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 036577 401 NGYCKNKEIEGALSLYSEMLSKGIKP-DVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAADT 463 (470)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 463 (470)
.++...|++++|++.|++.++. .| +..++..+..++...|++++|.+.|++..+ +.|+.
T Consensus 313 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~ 372 (388)
T d1w3ba_ 313 NIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTF 372 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence 9999999999999999998865 34 456788888999999999999999999887 66764
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.5e-21 Score=179.73 Aligned_cols=375 Identities=13% Similarity=0.069 Sum_probs=306.7
Q ss_pred CCCCchhHHHHHhhhhccCChhhHHHHHHHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 036577 43 PSYPNTTAKLKESLRLTVKDRASLEKFLRERFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKH 122 (470)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 122 (470)
+.+..+...+.+++...+.+.. . +...|..+...|++++|+..|+.+++..|. +..+|..+..++.+.|+
T Consensus 13 G~~~~A~~~~~~~l~~~p~~~~-~-------~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQEPDNTG-V-------LLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHH-H-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-H-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHhhhhcc
Confidence 3444555555556554333321 1 222334456678999999999999999887 88999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036577 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTK 202 (470)
Q Consensus 123 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 202 (470)
+++|+..+....+.. +.+..............+....+........... .................+....+...+.+
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence 999999999998875 5566667777777777788777777776666543 34555666677777888899999998888
Q ss_pred HHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 036577 203 LKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDE 282 (470)
Q Consensus 203 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 282 (470)
..... +.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++.....
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-------cccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence 87653 3456778888899999999999999999998876 567788999999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 036577 283 NINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYN 362 (470)
Q Consensus 283 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 362 (470)
+ +.+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...++....... .+...+.
T Consensus 233 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 309 (388)
T d1w3ba_ 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLN 309 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred h-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-ccchhhh
Confidence 4 3467788889999999999999999999998875 55678899999999999999999999999988754 4788899
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhc
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP-DVVIYNTLFIGLFEI 441 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 441 (470)
.+...+...|++++|...|++.++.. +.+..++..+..+|.+.|++++|++.|++.++. .| +...|..+..++.+.
T Consensus 310 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 310 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999998764 447888999999999999999999999999965 45 466899999999888
Q ss_pred CC
Q 036577 442 HQ 443 (470)
Q Consensus 442 g~ 443 (470)
||
T Consensus 387 ~D 388 (388)
T d1w3ba_ 387 QD 388 (388)
T ss_dssp CC
T ss_pred CC
Confidence 75
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.2e-15 Score=132.74 Aligned_cols=240 Identities=13% Similarity=0.051 Sum_probs=137.7
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 036577 80 GDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (470)
Q Consensus 80 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (470)
.+...|++++|+..|+.+++..|. ++.+|..+..++...|++++|+..|.+..+.. +.+...+..+..++...|+++
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccc
Confidence 345678999999999999998887 88899999999999999999999999988764 556788888899999999999
Q ss_pred hHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 036577 160 PGFVVLGRILRSCFTPDAVT-FNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (470)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 238 (470)
+|.+.++.+.... |+... +........ ..+.......+..+...+.+.+|.+.+.+.
T Consensus 105 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 105 QACEILRDWLRYT--PAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHhc--cchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 9999999887753 22110 000000000 000000001111222233344444455444
Q ss_pred HhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 036577 239 ANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQG 318 (470)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (470)
....+ ...+..++..+...+...|++++|...+++..... +-+...|..+..+|...|++++|...|++..+..
T Consensus 163 l~~~p-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 236 (323)
T d1fcha_ 163 VRLDP-----TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 236 (323)
T ss_dssp HHHST-----TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhh-----cccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh
Confidence 44332 12234444455555555555555555555544432 1234445555555555555555555555554432
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036577 319 VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ 351 (470)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 351 (470)
+-+...+..+..+|.+.|++++|+..|++.++
T Consensus 237 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 237 -PGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22344455555555555555555555555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.3e-14 Score=127.82 Aligned_cols=274 Identities=12% Similarity=0.025 Sum_probs=208.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036577 112 ILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAES 191 (470)
Q Consensus 112 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (470)
.....+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|...+++.++.. +.+...+..++..|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45667889999999999999999875 5678899999999999999999999999998864 456788899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHH
Q 036577 192 RIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDK 271 (470)
Q Consensus 192 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 271 (470)
++++|.+.+++..... |+............. ..+.......+..+...+.+.+
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------------GAGLGPSKRILGSLLSDSLFLE 154 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------------CTTHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------------hcccccchhhHHHHHHhhHHHH
Confidence 9999999999988753 332211100000000 0011111112223344556778
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036577 272 AKELFLKMKDEN-INPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMI 350 (470)
Q Consensus 272 a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 350 (470)
|.+.+....... -..+...+..+...+...|++++|+..+++..... +-+...|..+..++...|++++|.+.+++++
T Consensus 155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 233 (323)
T d1fcha_ 155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRAL 233 (323)
T ss_dssp HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHH
Confidence 888888776542 23467788889999999999999999999998774 4567889999999999999999999999999
Q ss_pred HcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 036577 351 QIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN----------RCMHDVFSYSILINGYCKNKEIEGALSLY 416 (470)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 416 (470)
+..+. +..++..++.+|.+.|++++|+..|++.++. ........|..+-.++...|+.+.+....
T Consensus 234 ~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~ 308 (323)
T d1fcha_ 234 ELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 308 (323)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHhhc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 87544 6788999999999999999999999987651 22335667888888888888887765543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=3.3e-11 Score=108.18 Aligned_cols=272 Identities=12% Similarity=0.046 Sum_probs=193.4
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHH
Q 036577 80 GDITTITPNEAFCIFDYMLNMRPSPPP---VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGL-FPD----LYTYNILINC 151 (470)
Q Consensus 80 ~~~~~~~~~~A~~~f~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~ 151 (470)
.....|++++|+++|+..+...|..+. ..++..+..++...|++++|+..|++..+... .++ ...+..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 345678999999999999998776222 34677888999999999999999998765310 112 3456677788
Q ss_pred HHhcCCcchHHHHHHHHHh----CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCcchHHHHHH
Q 036577 152 FCKMGRVSPGFVVLGRILR----SCFTP---DAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCE----PNVITYSTLIN 220 (470)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~----~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~----~~~~~~~~l~~ 220 (470)
+...|++..+...+..... .+... ....+..+...+...|+++.+...+......... .....+.....
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 8999999999998887764 21111 2345667788899999999999999988764321 12334555667
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHH
Q 036577 221 GLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENIN---PNVVTYNSLIHG 297 (470)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~ 297 (470)
.+...++...+...+.+..................+..+...+...|++++|...++........ .....+..+..+
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 260 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 260 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 78889999999988887765443221111122345666777888899999999999887654222 224456667788
Q ss_pred HHccCCHHHHHHHHHHHHH----CCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036577 298 FCYANDWNEAKCLLIEMMD----QGVQPN-VVTFNVIMDELCKNGKMDEASRLLDLMIQ 351 (470)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 351 (470)
+...|++++|...+++... .+..|+ ...+..+..+|.+.|++++|.+.+++..+
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 261 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999998887753 233333 34567777888888888888888887654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.3e-10 Score=102.23 Aligned_cols=146 Identities=10% Similarity=0.017 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 036577 144 TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAES-RIMEAAALFTKLKAFGCEPNVITYSTLINGL 222 (470)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 222 (470)
.++.+...+.+.+..++|+++++++++.. +-+..+|+....++...| ++++|+..+++..+.. +-+..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 44444455555555555555555555543 334445555555555443 3555555555554432 22344555555555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 223 CRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC 299 (470)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 299 (470)
.+.|++++|++.++++.+.+ +.+...|..+...+.+.|++++|++.++.+.+.+ +.+...|+.+...+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-------p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~ 191 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVIS 191 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHhhhhhhh-------hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHH
Confidence 55555555555555555544 3445555555555555555555555555555442 123444444444333
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.4e-10 Score=101.96 Aligned_cols=205 Identities=8% Similarity=-0.039 Sum_probs=164.9
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (470)
.+.+.+++|+++++.+++.+|. +..+|+....++...| ++++|+..+++..+.. +-+..+|..+...+.+.|++++
T Consensus 54 ~~~e~~~~Al~~~~~ai~lnP~--~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~e 130 (315)
T d2h6fa1 54 QRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQ 130 (315)
T ss_dssp HHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTT
T ss_pred HhCCchHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhccHHH
Confidence 3456789999999999999987 9999999999988876 5899999999998875 6678899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC------hHHHHHH
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGH------TIVALNL 234 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~------~~~a~~~ 234 (470)
|++.++++++.. +.+..+|..+...+...|++++|+..++++.+.. +.+...|+.+...+.+.+. +++|++.
T Consensus 131 Al~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~ 208 (315)
T d2h6fa1 131 ELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 208 (315)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHH
Confidence 999999999874 5578999999999999999999999999999864 3467778887777766665 5789999
Q ss_pred HHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 036577 235 FEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENIN-PNVVTYNSLIHGFC 299 (470)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~ 299 (470)
+..+.... +.+...|..+...+.. ...+++.+.++...+.... .+...+..++..|.
T Consensus 209 ~~~al~~~-------P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 209 TLEMIKLV-------PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHS-------TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHhC-------CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 99988876 5677778777666544 4457777777777653222 24455555555553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.36 E-value=2e-10 Score=100.84 Aligned_cols=218 Identities=12% Similarity=0.050 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--------------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 87 PNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNK--------------HYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152 (470)
Q Consensus 87 ~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 152 (470)
.+.+..+|++++...|. ++..|...+..+...+ ..++|..+|++..+...+.+...|...+...
T Consensus 32 ~~Rv~~vyerAl~~~~~--~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~ 109 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45677888888887765 7777877666543322 2344555555554433233444444445555
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH-HHhcCChHHH
Q 036577 153 CKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLING-LCRTGHTIVA 231 (470)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~g~~~~a 231 (470)
...|+++.|..+++++++........+|...+..+.+.|+++.|.++|+++.+.+ +.+...|...... +...|+.+.|
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHH
Confidence 5555555555555555543222223344555555555555555555555544432 1122222222211 1223444445
Q ss_pred HHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHccCCHHHHH
Q 036577 232 LNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDEN-INP--NVVTYNSLIHGFCYANDWNEAK 308 (470)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~ 308 (470)
..+|+.+.... +.+...|...+....+.|+++.|..+|++..... ..| ....|...+..-...|+.+.+.
T Consensus 189 ~~i~e~~l~~~-------p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~ 261 (308)
T d2onda1 189 FKIFELGLKKY-------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhh-------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55555444432 3334444444444444455555555554444331 111 1223444444334444444444
Q ss_pred HHHHHH
Q 036577 309 CLLIEM 314 (470)
Q Consensus 309 ~~~~~~ 314 (470)
.+++++
T Consensus 262 ~~~~r~ 267 (308)
T d2onda1 262 KVEKRR 267 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=2.8e-10 Score=101.90 Aligned_cols=278 Identities=13% Similarity=0.003 Sum_probs=157.9
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----cch
Q 036577 144 TYNILINCFCKMGRVSPGFVVLGRILRSCFTPD----AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCE-PN----VIT 214 (470)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~ 214 (470)
........+...|++++|.+++++.++.....+ ..++..+..+|...|++++|+..|++..+.... ++ ...
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 334445566677777777777777766431111 235566667777777777777777776543111 11 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCCHH
Q 036577 215 YSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEP-NTVTYTTIIDGLCKEGFVDKAKELFLKMKDE----NINPNVV 289 (470)
Q Consensus 215 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~ 289 (470)
+..+...+...|++..+...+...............+ ....+..+...+...|+++.+...+...... +......
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 3445566667777777777777776654221110111 1124445566666777777777777666542 2222334
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HhH
Q 036577 290 TYNSLIHGFCYANDWNEAKCLLIEMMDQ----GVQP--NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPN---AFV 360 (470)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~ 360 (470)
.+..+...+...+++..+...+.+.... +..+ ....+......+...|++++|...+....+.....+ ...
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 4555556666677777777766655432 1111 112344455566667777777777766654432211 233
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 361 YNTLMDGFCLTGRVNRAKELFVSMES----NRCMH-DVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+..+..++...|++++|...++.... .+..| ....+..+..+|...|++++|.+.+++.++
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44566667777777777777766542 12222 344566666777777777777777776664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.33 E-value=6.4e-10 Score=97.56 Aligned_cols=219 Identities=10% Similarity=0.034 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh--------------CCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 229 IVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK--------------EGFVDKAKELFLKMKDENINPNVVTYNSL 294 (470)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 294 (470)
+.+..+|+++.... +.+...|...+..+.. .+..++|..+|++..+...+.+...|...
T Consensus 33 ~Rv~~vyerAl~~~-------~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~y 105 (308)
T d2onda1 33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34555677766553 4455556555543322 23457889999998876555677788888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHcCCC
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDG-FCLTGR 373 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~ 373 (470)
+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|+++.+.++. +...|...+.. +...|+
T Consensus 106 a~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~ 184 (308)
T d2onda1 106 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCC
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccC
Confidence 9999999999999999999988643333557889999999999999999999999987654 44455444443 345689
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCC--HhHHHHHHHHHHhcCCHHHHHHH
Q 036577 374 VNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKG-IKPD--VVIYNTLFIGLFEIHQVERAFKL 450 (470)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 450 (470)
.+.|..+|+.+.... +.+...|...+..+...|+++.|..+|++.++.. ..|+ ...|...+..-...|+.+.+.++
T Consensus 185 ~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~ 263 (308)
T d2onda1 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998863 5578899999999999999999999999998864 3443 35788888888889999999999
Q ss_pred HHHHHH
Q 036577 451 FDEMRR 456 (470)
Q Consensus 451 ~~~m~~ 456 (470)
++++.+
T Consensus 264 ~~r~~~ 269 (308)
T d2onda1 264 EKRRFT 269 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=1.5e-11 Score=109.77 Aligned_cols=251 Identities=9% Similarity=-0.035 Sum_probs=113.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----------hcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036577 120 NKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC----------KMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCA 189 (470)
Q Consensus 120 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (470)
.+..++|++++++..+.. |.+...|+..-..+. ..|++++|+.+++.+++.. +.+...|..+..++..
T Consensus 42 ~~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (334)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence 334466666666666543 223333433222222 2223445555555555542 3344555555555544
Q ss_pred cC--CHHHHHHHHHHHHhcCCCCCcchHH-HHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhC
Q 036577 190 ES--RIMEAAALFTKLKAFGCEPNVITYS-TLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKE 266 (470)
Q Consensus 190 ~g--~~~~a~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 266 (470)
.+ ++++|...++++.+.. +++...+. .....+...+..++|+..++.+...+ +.+...|+.+..++.+.
T Consensus 120 ~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-------p~~~~a~~~l~~~~~~~ 191 (334)
T d1dcea1 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-------FSNYSSWHYRSCLLPQL 191 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-------CCCHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHh
Confidence 43 3556666666655432 12233332 23344445566666666666665554 44555566666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 036577 267 GFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 346 (470)
Q Consensus 267 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 346 (470)
|++++|...++..... .|+ ...+...+...+..+++...+....... +++...+..+...+...++.++|...+
T Consensus 192 ~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 265 (334)
T d1dcea1 192 HPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKEL 265 (334)
T ss_dssp SCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 6555554433322221 000 0111122233344444444444444332 223333333444444444555555555
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 347 DLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
.+..+.++. +...+..++.++...|+.++|.+.++.+.+.
T Consensus 266 ~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 266 QELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 444443221 3344444444555555555555555554443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.22 E-value=1.9e-11 Score=109.02 Aligned_cols=265 Identities=10% Similarity=-0.032 Sum_probs=198.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 86 TPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAK----------NKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (470)
Q Consensus 86 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 155 (470)
..++|+.+++.+++..|. +..+|+..-..+.. .|++++|+.+++...+.+ +.+...|..+..++...
T Consensus 44 ~~~~al~~~~~~l~~~P~--~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 44 LDESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHh
Confidence 348999999999999987 77888665544333 344789999999998875 66788888888888877
Q ss_pred CC--cchHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 036577 156 GR--VSPGFVVLGRILRSCFTPDAVTFN-SLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVAL 232 (470)
Q Consensus 156 g~--~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~ 232 (470)
++ +++|...++++++.. +.+...+. .....+...+.+++|+..++++.... +-+...|+.+...+.+.|++++|.
T Consensus 121 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence 75 679999999998864 44566654 45577778999999999999998764 346788999999999999998886
Q ss_pred HHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 036577 233 NLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLI 312 (470)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (470)
..++...... |+ .......+...+..+++...+....... +++...+..+...+...+++++|...+.
T Consensus 199 ~~~~~~~~~~--------~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 266 (334)
T d1dcea1 199 PQGRLPENVL--------LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQ 266 (334)
T ss_dssp SCCSSCHHHH--------HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHhH--------HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6665544332 11 1223344556677788888888877653 3455566667777888899999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 036577 313 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFC 369 (470)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (470)
+..+.. +.+...+..+..++...|++++|...++.+++.++. +...|..+...+.
T Consensus 267 ~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~~L~~~~~ 321 (334)
T d1dcea1 267 ELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKFL 321 (334)
T ss_dssp HHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHH
T ss_pred HHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHh
Confidence 887664 345667888889999999999999999999987432 4556666655554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=5.1e-10 Score=95.51 Aligned_cols=127 Identities=15% Similarity=-0.033 Sum_probs=68.9
Q ss_pred hccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036577 74 FKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (470)
Q Consensus 74 ~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 153 (470)
+...|..+...|++++|+..|+.+++..|. ++.+|+.+..++.+.|++++|+..|+++.+.. +.+..++..+..++.
T Consensus 40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 40 LYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccCCC--CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 334445555556666666666666666555 56666666666666666666666666665543 334455556666666
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 154 KMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLK 204 (470)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 204 (470)
..|++++|.+.++..++.. +.+......+...+.+.+..+.+..+.....
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 166 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 6666666666666665542 2233333333333444444444443333333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=9.2e-10 Score=93.90 Aligned_cols=120 Identities=8% Similarity=-0.081 Sum_probs=66.4
Q ss_pred CChhHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 036577 85 ITPNEAFCIFDYMLNMRPSP--PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGF 162 (470)
Q Consensus 85 ~~~~~A~~~f~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 162 (470)
.+.+.|+.-+++++...... -...+|..+..+|.+.|++++|+..|++.++.. +.+..+|..+..++.+.|++++|+
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhh
Confidence 34455555666665543321 123355555666666666666666666666543 445555666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036577 163 VVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAF 206 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (470)
..|+++++.. +.+..++..+..+|...|++++|...|++..+.
T Consensus 92 ~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 92 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666665542 223445555555555566666666666555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=1.3e-08 Score=74.54 Aligned_cols=104 Identities=10% Similarity=0.015 Sum_probs=82.3
Q ss_pred cCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036577 76 SSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (470)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 155 (470)
..|..++..|++++|+..|+.+++..|. +...|..+..++.+.|++++|+..+++..+.+ +.+...|..+..++...
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCc--chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHc
Confidence 3455667778889999999998888876 88888888888888899999999998888775 67788888888888888
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHHHHHH
Q 036577 156 GRVSPGFVVLGRILRSCFTPDAVTFNSL 183 (470)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (470)
|++++|+..+++.++.. +.+...+..+
T Consensus 85 ~~~~~A~~~~~~a~~~~-p~~~~~~~~l 111 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHE-ANNPQLKEGL 111 (117)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 88888888888888763 3344444433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.80 E-value=1.4e-05 Score=67.49 Aligned_cols=223 Identities=11% Similarity=-0.024 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCcccCCC
Q 036577 177 AVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCR----TGHTIVALNLFEEMANGNGEIGVVCEPN 252 (470)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (470)
+..+..|...+...+++++|++.|++..+.| +...+..|...|.. ..+...|...+......+ +
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---------~ 69 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------Y 69 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------C
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------c
Confidence 3444555555666666666666666665543 55555555555554 345556666666555433 2
Q ss_pred HhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHHCCCCCCHh
Q 036577 253 TVTYTTIIDGLCK----EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFC----YANDWNEAKCLLIEMMDQGVQPNVV 324 (470)
Q Consensus 253 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~ 324 (470)
......+...+.. ..+.+.|...++.....|. ......+...+. .......+...+...... .+..
T Consensus 70 ~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~ 143 (265)
T d1ouva_ 70 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGD 143 (265)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHH
T ss_pred cchhhccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccc
Confidence 2333333333332 3345555555555555432 122222222222 123344444444444432 2334
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036577 325 TFNVIMDELCK----NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESNRCMHDVFSY 396 (470)
Q Consensus 325 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 396 (470)
.+..+...+.. ..+...+...++...+.| +......+...|.. ..+.++|...|+...+.| +...+
T Consensus 144 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~ 217 (265)
T d1ouva_ 144 GCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGC 217 (265)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred hhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHH
Confidence 44444444443 233444444444444432 33333334433332 334555555555555444 34444
Q ss_pred HHHHHHHHH----cCChhHHHHHHHHHHHCC
Q 036577 397 SILINGYCK----NKEIEGALSLYSEMLSKG 423 (470)
Q Consensus 397 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 423 (470)
..|..+|.+ ..+.++|.++|++..+.|
T Consensus 218 ~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 218 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 444444443 224455555555554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.78 E-value=1.8e-05 Score=66.77 Aligned_cols=223 Identities=13% Similarity=0.010 Sum_probs=106.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHH
Q 036577 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELFLKMKDENINPNVV 289 (470)
Q Consensus 214 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 289 (470)
.+..+...+.+.+++++|++.|++..+.+ +...+..|...|.. ..+...|...+......+ +..
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~ 71 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 71 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccc
Confidence 44445555555666666666666665443 33444445555554 445556666665555543 222
Q ss_pred HHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhHH
Q 036577 290 TYNSLIHGFCY----ANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASRLLDLMIQIGVRPNAFVY 361 (470)
Q Consensus 290 ~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 361 (470)
....+...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+...... .+...+
T Consensus 72 a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 145 (265)
T d1ouva_ 72 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGC 145 (265)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hhhccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchh
Confidence 33333332221 3445556666655555442 1112222222221 23344455555544443 234444
Q ss_pred HHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 036577 362 NTLMDGFCL----TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPDVVIYNT 433 (470)
Q Consensus 362 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 433 (470)
..+...+.. ..+...+...++...+.+ +......+...|.. ..++++|+.+|++..+.| ++..+..
T Consensus 146 ~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~ 219 (265)
T d1ouva_ 146 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 219 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHH
Confidence 455555543 344555555555555543 44455555544444 345666666666665543 3334444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 036577 434 LFIGLFE----IHQVERAFKLFDEMRRDGVA 460 (470)
Q Consensus 434 l~~~~~~----~g~~~~A~~~~~~m~~~g~~ 460 (470)
|...|.. ..+.++|.++|++..+.|-.
T Consensus 220 LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 220 LGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 4444443 22555666666666555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=4e-08 Score=76.42 Aligned_cols=109 Identities=9% Similarity=0.057 Sum_probs=87.2
Q ss_pred HhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 73 RFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152 (470)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 152 (470)
.++..|..+...|++++|+..|+.+++.+|. +...|..+..++...|++++|++.|++.++.. +.+..+|..+..++
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccchh--hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHH
Confidence 3444566677888999999999999998886 88899999999999999999999999988875 66778888899999
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 153 CKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
...|++++|...+++..+.. +.+...+..+..
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~ 120 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQE 120 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 99999999999998888864 334555544433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=3.8e-07 Score=73.06 Aligned_cols=123 Identities=15% Similarity=-0.024 Sum_probs=73.6
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHH
Q 036577 298 FCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 377 (470)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 377 (470)
+...|++++|++.|.++. +|+..+|..+..+|...|++++|+..|++.++.++. +...|..+..++.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHH
Confidence 445566666666555431 445555555666666666666666666666665433 455566666666666666666
Q ss_pred HHHHHHHHHCCC--------------CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 036577 378 KELFVSMESNRC--------------MH-DVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK 425 (470)
Q Consensus 378 ~~~~~~~~~~~~--------------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 425 (470)
...|++.+.... .. ...++..+..++.+.|++++|.+.++...+....
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 666665543210 00 1345566777888888888888888888755333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.77 E-value=2.6e-07 Score=79.72 Aligned_cols=206 Identities=12% Similarity=-0.038 Sum_probs=136.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHhC----CC-CCCHHH
Q 036577 110 FNILFGCLAKNKHYDTVLSLFKRLNST----GLFP-DLYTYNILINCFCKMGRVSPGFVVLGRILRS----CF-TPDAVT 179 (470)
Q Consensus 110 ~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~ 179 (470)
|......|...|++++|.+.|.+.... +-.+ -..+|..+..+|.+.|++++|.+.+++..+. |. .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 444456788899999999999887653 2111 2357888999999999999999999887652 11 112455
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHhc----CCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCH
Q 036577 180 FNSLIKGLCA-ESRIMEAAALFTKLKAF----GCEP-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNT 253 (470)
Q Consensus 180 ~~~l~~~~~~-~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (470)
+..+...|.. .|++++|++.|++..+. +.++ ...++..+...+...|++++|++.|+++.............-.
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 6667777754 69999999999987542 1111 1345778899999999999999999998876532211001111
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHc--cCCHHHHHHHHHHHH
Q 036577 254 VTYTTIIDGLCKEGFVDKAKELFLKMKDENIN-PN---VVTYNSLIHGFCY--ANDWNEAKCLLIEMM 315 (470)
Q Consensus 254 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~---~~~~~~li~~~~~--~~~~~~a~~~~~~~~ 315 (470)
..+...+..+...|+++.|.+.++...+.... ++ ......++.++.. .+.+++|+..|+.+.
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 23445556677889999999999998775321 11 2234555666544 244677777765443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=3.7e-07 Score=73.11 Aligned_cols=123 Identities=11% Similarity=-0.024 Sum_probs=68.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHH
Q 036577 184 IKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGL 263 (470)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 263 (470)
...+...|+++.|++.|+++. +++..+|..+..+|...|++++|++.|++..+.+ +.+...|..+..++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-------p~~~~a~~~~g~~~ 80 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KHLAVAYFQRGMLY 80 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-------hhhhhhHHHHHHHH
Confidence 344455666666666665432 3455566666666666666666666666666655 44556666666666
Q ss_pred HhCCCHHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 264 CKEGFVDKAKELFLKMKDENIN--------------P-NVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 264 ~~~g~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
.+.|++++|.+.|++....... . ...++..+..++.+.|++++|.+.+....+.
T Consensus 81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6666666666666665432100 0 0123334444555555555555555555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=5e-07 Score=65.75 Aligned_cols=91 Identities=18% Similarity=0.116 Sum_probs=57.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEI 409 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 409 (470)
...+.+.|++++|+..|.+.++..+. +...|..+..++...|++++|+..+...++.+ +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 44556666666666666666665443 55666666666666666666666666666553 34666666666666666666
Q ss_pred hHHHHHHHHHHHC
Q 036577 410 EGALSLYSEMLSK 422 (470)
Q Consensus 410 ~~A~~~~~~~~~~ 422 (470)
++|+..|++.++.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666644
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=4.1e-07 Score=78.41 Aligned_cols=199 Identities=15% Similarity=0.016 Sum_probs=138.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CC-CCCHhHHH
Q 036577 258 TIIDGLCKEGFVDKAKELFLKMKDE----NIN-PNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ----GV-QPNVVTFN 327 (470)
Q Consensus 258 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 327 (470)
.....|...|++++|.+.|.++.+. +-+ .-..+|..+..+|.+.|++++|...+++..+. +. .....++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 3445788899999999999887652 111 12457888999999999999999999987643 21 11134566
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC------HHH
Q 036577 328 VIMDELCK-NGKMDEASRLLDLMIQI----GVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHD------VFS 395 (470)
Q Consensus 328 ~l~~~~~~-~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~ 395 (470)
.+...|.. .|++++|+..+.+..+. +..+ -..++..++..+...|++++|...|+++........ ...
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 66666754 69999999999987653 1111 134578889999999999999999999887532211 123
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC---HhHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 036577 396 YSILINGYCKNKEIEGALSLYSEMLSKGIK-PD---VVIYNTLFIGLFE--IHQVERAFKLFDEMRR 456 (470)
Q Consensus 396 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~---~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~ 456 (470)
+...+.++...|+++.|...+++..+.... ++ ......++.++.. .+.+++|+..|+++.+
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 455666778899999999999998865321 11 2345667777665 3468888888765543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=8.9e-07 Score=68.52 Aligned_cols=120 Identities=13% Similarity=0.030 Sum_probs=83.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036577 328 VIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNK 407 (470)
Q Consensus 328 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 407 (470)
.....|.+.|++++|+..|.++++.++. +...|..+..+|...|++++|...|+..++.+ +.+..+|..++.++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 3455677888888888888888887654 77788888888888888888888888887764 447778888888888888
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHH--HHhcCCHHHHHHH
Q 036577 408 EIEGALSLYSEMLSKGIKPDVVIYNTLFIG--LFEIHQVERAFKL 450 (470)
Q Consensus 408 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~ 450 (470)
++++|...+++....... +...+..+..+ ....+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888888888888765322 33344333322 2333445555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.59 E-value=4.3e-07 Score=73.46 Aligned_cols=100 Identities=13% Similarity=-0.025 Sum_probs=87.7
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036577 321 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILI 400 (470)
Q Consensus 321 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 400 (470)
|+...+......+.+.|++++|+..|.++++..+. +...|..++.+|.+.|++++|...|+..++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 66777788888999999999999999999988654 78889999999999999999999999998764 33788899999
Q ss_pred HHHHHcCChhHHHHHHHHHHHC
Q 036577 401 NGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
.+|...|++++|+..|+++++.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988753
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.54 E-value=8.7e-07 Score=71.57 Aligned_cols=100 Identities=9% Similarity=-0.078 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 036577 286 PNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLM 365 (470)
Q Consensus 286 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 365 (470)
|+...+......|.+.|++++|+..|.+.++.. +.+...|..+..+|.+.|++++|+..++.+++..+. +...|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 677888888999999999999999999998875 668889999999999999999999999999987544 678899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC
Q 036577 366 DGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
.+|...|++++|...|+...+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988753
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.50 E-value=1.2e-07 Score=68.49 Aligned_cols=84 Identities=12% Similarity=0.052 Sum_probs=50.3
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 036577 82 ITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPG 161 (470)
Q Consensus 82 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 161 (470)
...|++++|+..|+.++...|. ++.+|..+..++.+.|++++|+..|++..+.. +.+..++..+..+|...|++++|
T Consensus 27 ~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~A 103 (112)
T d1hxia_ 27 LKLANLAEAALAFEAVCQKEPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAA 103 (112)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHhhhcccccc--cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHHH
Confidence 3445666666666666666554 56666666666666666666666666665543 44455556666666666666666
Q ss_pred HHHHHHH
Q 036577 162 FVVLGRI 168 (470)
Q Consensus 162 ~~~~~~~ 168 (470)
.+.+++.
T Consensus 104 ~~~l~~~ 110 (112)
T d1hxia_ 104 LASLRAW 110 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655553
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.3e-07 Score=67.85 Aligned_cols=94 Identities=14% Similarity=0.063 Sum_probs=53.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 036577 328 VIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGR---VNRAKELFVSMESNRCMHD-VFSYSILINGY 403 (470)
Q Consensus 328 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 403 (470)
.++..+...+++++|.+.|+.....++. +..++..+..++.+.++ .++|+.+++++...+..|+ ..+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4555556666666666666666665433 55566666666655433 3346666666555432222 23455566666
Q ss_pred HHcCChhHHHHHHHHHHHC
Q 036577 404 CKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~ 422 (470)
.+.|++++|++.|+++++.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 6666666666666666643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.46 E-value=1.2e-06 Score=63.11 Aligned_cols=86 Identities=12% Similarity=0.020 Sum_probs=38.7
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 036577 366 DGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVE 445 (470)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 445 (470)
..+.+.|++++|...|++.+... +-+...|..+..++.+.|++++|+..|++.++.... +...|..+...|...|+++
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCHH
Confidence 33444444444444444444432 224444444444444444444444444444433211 2334444444444445555
Q ss_pred HHHHHHHH
Q 036577 446 RAFKLFDE 453 (470)
Q Consensus 446 ~A~~~~~~ 453 (470)
+|.+.+++
T Consensus 102 ~A~~~l~~ 109 (112)
T d1hxia_ 102 AALASLRA 109 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=2.7e-06 Score=66.46 Aligned_cols=96 Identities=8% Similarity=0.022 Sum_probs=50.9
Q ss_pred hccCCCCccccCChhHHHHHHHHHHhcCCCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 036577 74 FKSSGEGDITTITPNEAFCIFDYMLNMRPSPPP-------------VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFP 140 (470)
Q Consensus 74 ~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~ 140 (470)
++..|..+...|++++|+..|+.++...+..+. ..+|+.+..+|.+.|++++|+..++..+..+ +.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~ 94 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SN 94 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-cc
Confidence 344455666778888888888888776544211 1233334444444455555555554444433 33
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036577 141 DLYTYNILINCFCKMGRVSPGFVVLGRILR 170 (470)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 170 (470)
+..++..+..++...|++++|...|+..++
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444444444444444444444444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.33 E-value=0.00067 Score=58.24 Aligned_cols=266 Identities=10% Similarity=0.101 Sum_probs=118.5
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 036577 79 EGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (470)
Q Consensus 79 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 158 (470)
..+.+.|.++.|..+|..+. -|..++..+.+.++++.|.+.+.+. .+..+|..+...+.+....
T Consensus 22 ~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~ 85 (336)
T d1b89a_ 22 DRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF 85 (336)
T ss_dssp -------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHH
Confidence 34445566666666665441 1455556666666666665555432 1344555555555554433
Q ss_pred chHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 036577 159 SPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (470)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 238 (470)
..+ .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+ .++..+.+...
T Consensus 86 ~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~ 158 (336)
T d1b89a_ 86 RLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREHLELF 158 (336)
T ss_dssp HHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHHHHHhc
Confidence 221 1112222233334445555555566666666555554422 1233444555555555433 22222222221
Q ss_pred HhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 036577 239 ANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQG 318 (470)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (470)
.. ..-...++..|.+.+-+++ ++-.|.+.|+++.|..+. .+.
T Consensus 159 s~------------~y~~~k~~~~c~~~~l~~e----------------------lv~Ly~~~~~~~~A~~~~---i~~- 200 (336)
T d1b89a_ 159 WS------------RVNIPKVLRAAEQAHLWAE----------------------LVFLYDKYEEYDNAIITM---MNH- 200 (336)
T ss_dssp ST------------TSCHHHHHHHHHTTTCHHH----------------------HHHHHHHTTCHHHHHHHH---HHS-
T ss_pred cc------------cCCHHHHHHHHHHcCChHH----------------------HHHHHHhcCCHHHHHHHH---HHc-
Confidence 10 1111223333333333333 333444444444444332 121
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHH-------------HHHHHHcCCCHHHHHHHHHHHH
Q 036577 319 VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNT-------------LMDGFCLTGRVNRAKELFVSME 385 (470)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~g~~~~A~~~~~~~~ 385 (470)
+++......++..+.+.++.+...++.....+. .| ...+. ++..+.+.+++......++...
T Consensus 201 -~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~ 275 (336)
T d1b89a_ 201 -PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQ 275 (336)
T ss_dssp -TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred -chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 233333344445555555555555544444432 12 22233 3344444555555555555544
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 036577 386 SNRCMHDVFSYSILINGYCKNKEIEGAL 413 (470)
Q Consensus 386 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 413 (470)
+.+ +....+++...|...++++.-.
T Consensus 276 ~~n---~~~vn~al~~lyie~~d~~~l~ 300 (336)
T d1b89a_ 276 NHN---NKSVNESLNNLFITEEDYQALR 300 (336)
T ss_dssp TTC---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcC---hHHHHHHHHHHHhCcchhHHHH
Confidence 443 4567777777777777765433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=4.3e-06 Score=60.86 Aligned_cols=98 Identities=14% Similarity=0.181 Sum_probs=56.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCCCH-hHHHHHHHHH
Q 036577 363 TLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKE---IEGALSLYSEMLSKGIKPDV-VIYNTLFIGL 438 (470)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~ 438 (470)
.+++.+...+++++|++.|+.....+ +.+..++..+..++.+.++ +++|+.++++++..+..|+. .+|..|..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45555556666666666666666654 3456666666666655433 33466666666654333322 2555566666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCh
Q 036577 439 FEIHQVERAFKLFDEMRRDGVAADT 463 (470)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~g~~p~~ 463 (470)
.+.|++++|+++|+++.+ +.|+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~--~~P~~ 105 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--TEPQN 105 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHhhhHHHHHHHHHHHH--hCcCC
Confidence 666666666666666666 45553
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2.3e-05 Score=60.91 Aligned_cols=80 Identities=10% Similarity=-0.145 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGL 438 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (470)
.+|+.+..+|.+.|++++|+..++..+..+ +.+...|..++.+|...|++++|+..|++.++.... +......+....
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 356677888888999999999998888764 448888888899999999999999999988875322 444444444443
Q ss_pred Hh
Q 036577 439 FE 440 (470)
Q Consensus 439 ~~ 440 (470)
.+
T Consensus 141 ~~ 142 (170)
T d1p5qa1 141 QR 142 (170)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.21 E-value=0.0013 Score=56.41 Aligned_cols=291 Identities=11% Similarity=0.089 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036577 106 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIK 185 (470)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (470)
+..--..++..|.+.|.++.|..+|..+. -|..++..+.+.++++.|.++..+. .+..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 44444567788888999999999997554 2667778888888888887777653 26678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHh
Q 036577 186 GLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCK 265 (470)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (470)
.+.+..+...+. +...+...+......++..|-..|.+++...+++...... ..+...++.++..|++
T Consensus 78 ~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-------~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 78 ACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSK 145 (336)
T ss_dssp HHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-------TCCHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-------ccchHHHHHHHHHHHH
Confidence 888877665542 2222233455556678888899999999999999876544 5677788888888888
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 036577 266 EGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRL 345 (470)
Q Consensus 266 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 345 (470)
.+. ++..+.+.... +......++..|.+.+-|+++.-++.++.. .+ +++........+..+...+
T Consensus 146 ~~~-~kl~e~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~----~~----~A~~~~i~~~~~~~~~~~f 210 (336)
T d1b89a_ 146 FKP-QKMREHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDKYEE----YD----NAIITMMNHPTDAWKEGQF 210 (336)
T ss_dssp TCH-HHHHHHHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHHHHTTC----HH----HHHHHHHHSTTTTCCHHHH
T ss_pred hCh-HHHHHHHHhcc------ccCCHHHHHHHHHHcCChHHHHHHHHhcCC----HH----HHHHHHHHcchhhhhHHHH
Confidence 643 33333333221 112234567888889999998888877642 12 1222223333333334444
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 036577 346 LDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK 425 (470)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 425 (470)
.+-..+. .|+..|-.++..|..+ +.+-...++..+... + |. ..++..+-+.+++.-...+++...+.+
T Consensus 211 ~e~~~k~---~N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~-~--d~---~r~V~~~~k~~~l~li~p~Le~v~~~n-- 278 (336)
T d1b89a_ 211 KDIITKV---ANVELYYRAIQFYLEF-KPLLLNDLLMVLSPR-L--DH---TRAVNYFSKVKQLPLVKPYLRSVQNHN-- 278 (336)
T ss_dssp HHHHHHC---SSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGG-C--CH---HHHHHHHHHTTCTTTTHHHHHHHHTTC--
T ss_pred HHHHHcc---CChHHHHHHHHHHHHc-CHHHHHHHHHHhccC-C--CH---HHHHHHHHhcCCcHHHHHHHHHHHHcC--
Confidence 4444443 2555666677777654 344445555444432 1 22 456777788899999999998877654
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHH
Q 036577 426 PDVVIYNTLFIGLFEIHQVERAFKLF 451 (470)
Q Consensus 426 p~~~~~~~l~~~~~~~g~~~~A~~~~ 451 (470)
+..+.++|...|...++++.-++..
T Consensus 279 -~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 279 -NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 4467888889999999876644443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=1.9e-06 Score=63.69 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=57.8
Q ss_pred cCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC----HHHHHHHH
Q 036577 76 SSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG--LFPD----LYTYNILI 149 (470)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~~~~----~~~~~~li 149 (470)
..|..+...|++++|+..|+.+++.+|. +..+|..+..+|.+.|++++|++.++++++.. .... ..+|..+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPT--NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 3444555667777777777777777665 66777777777777777777777777765531 0000 12445555
Q ss_pred HHHHhcCCcchHHHHHHHHHh
Q 036577 150 NCFCKMGRVSPGFVVLGRILR 170 (470)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~ 170 (470)
..+...+++++|++.|+..+.
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 555666666666666665554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=9.3e-06 Score=59.82 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=63.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 036577 326 FNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRC--MHD----VFSYSIL 399 (470)
Q Consensus 326 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~l 399 (470)
+..+...+.+.|++++|+..|.+.++.++. +...+..+..+|.+.|++++|...++++++... ... ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 445566777777777777777777776543 666777777777777777777777777655310 000 2355666
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC
Q 036577 400 INGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 400 ~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
...+...+++++|++.|++.+..
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 66677777777777777766643
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=1.4e-06 Score=81.15 Aligned_cols=210 Identities=10% Similarity=-0.056 Sum_probs=111.3
Q ss_pred HhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH--H
Q 036577 73 RFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILI--N 150 (470)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li--~ 150 (470)
.+...|..+...+++++| |++++..+|. ....++... .+. ...+..+++.++...+....++..-..... .
T Consensus 22 a~~~la~~~~~~~~l~ea---ye~~i~~dp~--~a~~~~~e~-~Lw-~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~ 94 (497)
T d1ya0a1 22 SKLGPAEVWTSRQALQDL---YQKMLVTDLE--YALDKKVEQ-DLW-NHAFKNQITTLQGQAKNRANPNRSEVQANLSLF 94 (497)
T ss_dssp SSSCSSSSHHHHHHHHHH---HHHHHHHCHH--HHHHHTHHH-HHH-HHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHH
T ss_pred HHhhHHHHHHHHchHHHH---HHHHHHcChh--hHHHHhHHH-HHH-HHHHHHHHHHHHHhcccccCccHHHHHHHHHHH
Confidence 344455556666666665 6666665432 222222211 111 223556777777766554333332222211 1
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 036577 151 CFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIV 230 (470)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 230 (470)
.....+.++.++..+....+.. +++...+..+...+.+.|+.++|...+++..... ...++..+...+...|++++
T Consensus 95 l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~ 170 (497)
T d1ya0a1 95 LEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQ 170 (497)
T ss_dssp HHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHH
Confidence 2223344555555444443332 3455667778888888888888888877765431 23567778888888999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 036577 231 ALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYA 301 (470)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 301 (470)
|...|++..... +.+...|+.+...+...|+..+|...|.+..... +|-..++..|...+.+.
T Consensus 171 A~~~y~~A~~l~-------P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 171 AESYYRHAAQLV-------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHC-------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence 999999998876 6677889999999999999999999998888764 46777888887776543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.13 E-value=3.5e-05 Score=58.63 Aligned_cols=97 Identities=11% Similarity=-0.034 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCH-----------hHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 036577 324 VTFNVIMDELCKNGKMDEASRLLDLMIQIGVR----PNA-----------FVYNTLMDGFCLTGRVNRAKELFVSMESNR 388 (470)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 388 (470)
..+..-...+.+.|++.+|+..|.++++.-.. ++. .+|+.+..+|.+.|++++|+..++..++.+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~ 97 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 97 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence 34555666778888888888888887764211 111 123334444444444444444444444432
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 389 CMHDVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
+.+..+|..++.++...|++++|+..|++.++
T Consensus 98 -p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 98 -KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 22444444444444444444444444444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=6.7e-07 Score=83.30 Aligned_cols=226 Identities=9% Similarity=-0.036 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHH
Q 036577 89 EAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL-YTYNILINCFCKMGRVSPGFVVLGR 167 (470)
Q Consensus 89 ~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~ 167 (470)
+|.+.|+++.+..|. .+.++..+..++...|++++| |+++...+ |+. ..++.. ..+.+ ..+..+.+.++.
T Consensus 4 eA~q~~~qA~~l~p~--~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e-~~Lw~-~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD--MTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVE-QDLWN-HAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHHGG--GTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHH-HHHHH-HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHH-HHHHH-HHHHHHHHHHHH
Confidence 688999999887776 566778888888888888876 66766542 221 111111 11111 123445555665
Q ss_pred HHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 036577 168 ILRSCFTPDAVTFNS--LIKGLCAESRIMEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGEI 245 (470)
Q Consensus 168 ~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 245 (470)
..+....++..-... +...+...+.++.++..+.+..... +++...+..+...+.+.|+.++|...++......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 554332222221111 1112222344444544444333221 2345556666666777777777776666654422
Q ss_pred CcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhH
Q 036577 246 GVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQGVQPNVVT 325 (470)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 325 (470)
...++..+...+...|++++|...|++..+.. +.+...|+.+...+...|+..+|...|.+..... +|-..+
T Consensus 151 ------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a 222 (497)
T d1ya0a1 151 ------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAA 222 (497)
T ss_dssp ------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHH
T ss_pred ------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHH
Confidence 12456666777777777777777777766653 2345667777777777777777777777776654 455666
Q ss_pred HHHHHHHHHH
Q 036577 326 FNVIMDELCK 335 (470)
Q Consensus 326 ~~~l~~~~~~ 335 (470)
+..|...+.+
T Consensus 223 ~~nL~~~~~~ 232 (497)
T d1ya0a1 223 STNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.08 E-value=1.7e-05 Score=61.65 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036577 145 YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKA 205 (470)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 205 (470)
|..+..+|.+.|++++|+..++..++.. +.+..+|..+..+|...|++++|...|+++..
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555555555432 33445555555555555555555555555554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.07 E-value=6.8e-05 Score=56.98 Aligned_cols=96 Identities=19% Similarity=0.054 Sum_probs=53.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCC----CCC-----------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 036577 291 YNSLIHGFCYANDWNEAKCLLIEMMDQGV----QPN-----------VVTFNVIMDELCKNGKMDEASRLLDLMIQIGVR 355 (470)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 355 (470)
+..-...+.+.|++.+|+..|.+.++.-. .++ ..+|..+..+|.+.|++++|+..+..+++.++.
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~ 99 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 99 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence 34444555566666666666666554311 011 123444555566666666666666666665433
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 036577 356 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESN 387 (470)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (470)
+..+|..++.++...|++++|...|+...+.
T Consensus 100 -~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 100 -NVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5566666666666666666666666666554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.03 E-value=3.4e-06 Score=70.74 Aligned_cols=123 Identities=6% Similarity=-0.121 Sum_probs=81.9
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 036577 81 DITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSP 160 (470)
Q Consensus 81 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (470)
.+..|++++|+..|+..++..|. +...+..++..++..|++++|+..|+...+.. +.+...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~--d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHH
Confidence 35678999999999999999887 89999999999999999999999999998864 3344455444444433322222
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036577 161 GFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLKAF 206 (470)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (470)
+..-.......+-+++...+......+...|+.++|.++++++.+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2111111011111223334444556677888899998888887765
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.01 E-value=7.1e-05 Score=58.38 Aligned_cols=59 Identities=3% Similarity=0.028 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 454 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (470)
.+..++.++...|++++|+..++++++.... +...|..++.+|...|+.++|++.|+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3444444555555555555555555443211 3444555555555555555555555544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.00 E-value=0.00022 Score=54.97 Aligned_cols=95 Identities=12% Similarity=0.001 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGL 438 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 438 (470)
.+|+.+..+|.+.|++++|+..++..+..+ +.+..+|..+..++...|++++|+..|+++++... .+......+....
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 346667788888999999999998888764 55888888888999999999999999999886532 2444544444444
Q ss_pred HhcCCH-HHHHHHHHHHH
Q 036577 439 FEIHQV-ERAFKLFDEMR 455 (470)
Q Consensus 439 ~~~g~~-~~A~~~~~~m~ 455 (470)
...+.. +...+.+.+|.
T Consensus 143 ~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 443333 23445555553
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=8e-05 Score=57.69 Aligned_cols=80 Identities=11% Similarity=-0.077 Sum_probs=58.0
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 036577 357 NAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFI 436 (470)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 436 (470)
....|..+..++.+.|++++|+..+..+++.. +.+...|..+..+|...|++++|+..|++.++.... +......+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34456677788888888888888888888765 447888888888888888888888888888875322 4444444444
Q ss_pred HH
Q 036577 437 GL 438 (470)
Q Consensus 437 ~~ 438 (470)
+.
T Consensus 154 ~~ 155 (169)
T d1ihga1 154 VK 155 (169)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=7.7e-05 Score=57.78 Aligned_cols=82 Identities=12% Similarity=-0.083 Sum_probs=63.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036577 322 NVVTFNVIMDELCKNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILIN 401 (470)
Q Consensus 322 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 401 (470)
....|..+..++.+.|++++|+..+..+++..+. +...|..++.++...|++++|...|+..++.. +.+......+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456677788888999999999999999887654 77888889999999999999999999888864 336666666555
Q ss_pred HHHH
Q 036577 402 GYCK 405 (470)
Q Consensus 402 ~~~~ 405 (470)
+..+
T Consensus 154 ~~~~ 157 (169)
T d1ihga1 154 VKQK 157 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.96 E-value=1.4e-05 Score=60.28 Aligned_cols=71 Identities=7% Similarity=-0.034 Sum_probs=54.0
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC----------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 83 TTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNK----------HYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152 (470)
Q Consensus 83 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 152 (470)
+.+.+++|+..|+.+++..|. ++.++..+..++...+ .+++|+..|++.++.+ +.+..+|..+..+|
T Consensus 9 r~~~fe~A~~~~e~al~~~P~--~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCc--chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence 445689999999999999987 8899999888887543 4567777777777665 55667777777777
Q ss_pred HhcC
Q 036577 153 CKMG 156 (470)
Q Consensus 153 ~~~g 156 (470)
...|
T Consensus 86 ~~~g 89 (145)
T d1zu2a1 86 TSFA 89 (145)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 6554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.87 E-value=6.9e-05 Score=58.47 Aligned_cols=127 Identities=14% Similarity=0.101 Sum_probs=84.7
Q ss_pred HhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036577 73 RFKSSGEGDITTITPNEAFCIFDYMLNMRPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152 (470)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 152 (470)
.....|......|++++|...|...+...+.+.-.. ....+-+...-..+.. .....+..+...+
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~-----------~~~~~w~~~~r~~l~~----~~~~a~~~la~~~ 77 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD-----------LRDFQFVEPFATALVE----DKVLAHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG-----------GTTSTTHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc-----------CcchHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 333444555677899999999999888765421110 0111111111111211 1235677788888
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hcCCCCCcchH
Q 036577 153 CKMGRVSPGFVVLGRILRSCFTPDAVTFNSLIKGLCAESRIMEAAALFTKLK-----AFGCEPNVITY 215 (470)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~g~~~~~~~~ 215 (470)
.+.|++++|+..++++++.. +-+...|..++.+|.+.|+.++|++.|+++. +.|+.|...+-
T Consensus 78 ~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 78 IACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 88999999999998888864 5678888999999999999999999888864 35888876543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.86 E-value=4.8e-05 Score=57.16 Aligned_cols=114 Identities=11% Similarity=0.016 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036577 336 NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL----------TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK 405 (470)
Q Consensus 336 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (470)
.+.+++|...++..++..+. +...+..+..++.. .+.+++|+..|++.++.+ +.+..+|..+..+|..
T Consensus 10 ~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHH
Confidence 33444555555555444332 44444444444432 233455666666665543 3355666666666654
Q ss_pred cC-----------ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 036577 406 NK-----------EIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGV 459 (470)
Q Consensus 406 ~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (470)
.| .+++|.+.|++.++. .|+...+..-+..+ ..|.+++.+..+.|+
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred cccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 43 357788888888854 56665554443333 466677777776664
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.82 E-value=1.3e-05 Score=66.99 Aligned_cols=120 Identities=14% Similarity=0.084 Sum_probs=55.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 036577 335 KNGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGALS 414 (470)
Q Consensus 335 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 414 (470)
+.|++++|+..+++.++..+. |...+..++..++..|++++|...++...+.. +-+...+..+...+...+..+++..
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHHH
Confidence 445566666666666555433 55555566666666666666666665555542 1133333333333322222222211
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036577 415 LYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRR 456 (470)
Q Consensus 415 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (470)
-.......+-.++...+......+...|+.++|.+.++++.+
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 111000001111122333334455566666666666666654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.45 E-value=0.0013 Score=49.80 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 394 FSYSILINGYCKNKEIEGALSLYSEMLSK-----GIKPD-----VVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 394 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
..|+.+..+|...|++++|+..+++.+.. ...++ ...+..+..+|...|++++|++.|++..
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666665555431 11111 1234555666666677777666666655
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.41 E-value=0.0018 Score=48.83 Aligned_cols=92 Identities=12% Similarity=0.021 Sum_probs=63.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-C----------CHhHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CCCC--
Q 036577 330 MDELCKNGKMDEASRLLDLMIQIGVR-P----------NAFVYNTLMDGFCLTGRVNRAKELFVSMESN-----RCMH-- 391 (470)
Q Consensus 330 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-- 391 (470)
...+.+.|++++|+..|++.++.... | ....|+.+..+|.+.|++++|...+++.+.. ...+
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 34455667777777777777654211 1 1356777888888888888888888776542 1111
Q ss_pred ---CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036577 392 ---DVFSYSILINGYCKNKEIEGALSLYSEMLS 421 (470)
Q Consensus 392 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 421 (470)
....+..+..+|...|++++|+..|++.++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 123567788999999999999999998775
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.001 Score=45.32 Aligned_cols=64 Identities=11% Similarity=-0.046 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-----CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 359 FVYNTLMDGFCLTGRVNRAKELFVSMESNR-----CMH-DVFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
..+-.++..+.+.|++++|...|++.++.. ..+ ...++..+..++.+.|++++|+..++++++.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 334456666667777777777776654421 111 2455666777777777777777777776654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.0022 Score=43.56 Aligned_cols=82 Identities=12% Similarity=-0.027 Sum_probs=56.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCcccCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 036577 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGEIGVVCEPNTVTYTTIIDGLCKEGFVDKAKELFLKMKDENINPNVVTY 291 (470)
Q Consensus 212 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 291 (470)
...+..+...+.+.|++++|...|++..+..+...........++..+..++.+.|++++|+..++++.+.. |-+..++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~ 83 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRAN 83 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHH
Confidence 344556778888999999999999888765422111112235678889999999999999999999988763 2234444
Q ss_pred HHH
Q 036577 292 NSL 294 (470)
Q Consensus 292 ~~l 294 (470)
+.+
T Consensus 84 ~Nl 86 (95)
T d1tjca_ 84 GNL 86 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.95 E-value=0.024 Score=40.97 Aligned_cols=81 Identities=16% Similarity=0.091 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCC
Q 036577 372 GRVNRAKELFVSMESNRCMHDVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFE----IHQ 443 (470)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 443 (470)
.+.++|...+++..+.| +......|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 44555555555555544 34444444444443 234555555555555543 22333334333333 235
Q ss_pred HHHHHHHHHHHHHcC
Q 036577 444 VERAFKLFDEMRRDG 458 (470)
Q Consensus 444 ~~~A~~~~~~m~~~g 458 (470)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 556666666655544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.83 E-value=0.026 Score=40.79 Aligned_cols=82 Identities=12% Similarity=0.018 Sum_probs=49.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cC
Q 036577 336 NGKMDEASRLLDLMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESNRCMHDVFSYSILINGYCK----NK 407 (470)
Q Consensus 336 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 407 (470)
..+.++|..++++..+.| ++.....|...|.. ..+.++|.++|++..+.+ +......|...|.. ..
T Consensus 36 ~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence 345566666666666654 33444445555443 345677777777777765 45555566666655 34
Q ss_pred ChhHHHHHHHHHHHCC
Q 036577 408 EIEGALSLYSEMLSKG 423 (470)
Q Consensus 408 ~~~~A~~~~~~~~~~~ 423 (470)
+.++|.++|++..+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 6777777777776665
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.87 E-value=0.044 Score=38.35 Aligned_cols=69 Identities=12% Similarity=0.129 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 036577 391 HDVFSYSILINGYCKNK---EIEGALSLYSEMLSKGIKPD-VVIYNTLFIGLFEIHQVERAFKLFDEMRRDGVAAD 462 (470)
Q Consensus 391 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 462 (470)
+...+--....++.+.. +.++++.++++....+ +.+ ...+..|..+|.+.|++++|+++++++.+ +.|+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~ 105 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 105 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTT
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCC
Confidence 34444445555555443 2345555665555432 112 23445555566666666666666666655 4444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.81 E-value=0.16 Score=35.15 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 036577 395 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMRRDGV 459 (470)
Q Consensus 395 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (470)
.++..++.+.++|+-|.-.++++.+.+ .-+|++...-.+..||.+.|...++-+++.+.-+.|+
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 344444455555555555555555443 2244444445555555555555555555555555544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.76 Score=40.65 Aligned_cols=115 Identities=8% Similarity=-0.085 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHH----HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHH
Q 036577 337 GKMDEASRLLDLMIQIGVRPNAFVYNTL----MDGFCLTGRVNRAKELFVSMESNRCMHDVFSYSILINGYCKNKEIEGA 412 (470)
Q Consensus 337 g~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 412 (470)
.+.+.+..++......... +..-+..+ .......+..+.+...+....... .+.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 3555666666655543222 22212111 122223445566666555554432 2333333344444555666666
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036577 413 LSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEMR 455 (470)
Q Consensus 413 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (470)
...++.|... ..-...-..-+..++...|+.++|..+|..+.
T Consensus 305 ~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 305 NTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 6666665321 11122233445566666777777777666654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.66 E-value=0.41 Score=33.12 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=25.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036577 295 IHGFCYANDWNEAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQIG 353 (470)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 353 (470)
++...+.|+-++-.+++..+.+.+ .+++...-.+..+|.+.|...++-+++.++-+.|
T Consensus 93 Ld~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 93 LDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 334444444444444444443332 4444444444444444444444444444444444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.87 E-value=1.3 Score=30.62 Aligned_cols=66 Identities=9% Similarity=-0.036 Sum_probs=35.8
Q ss_pred CCHhHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 036577 356 PNAFVYNTLMDGFCLTG---RVNRAKELFVSMESNRCMHD-VFSYSILINGYCKNKEIEGALSLYSEMLSK 422 (470)
Q Consensus 356 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 422 (470)
+...+--....++.+.. +.++++.+++.+.+.+ +.+ ...+-.|.-+|.+.|++++|.+.++.+++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 33334334444444443 3456666666665542 222 244555666666777777777777766654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.16 E-value=4.4 Score=35.38 Aligned_cols=53 Identities=8% Similarity=-0.127 Sum_probs=41.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036577 399 LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIYNTLFIGLFEIHQVERAFKLFDEM 454 (470)
Q Consensus 399 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (470)
-+..+...|+...|...|..+... .+......+.....+.|.++.|+....+.
T Consensus 387 ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 387 RVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 355677899999999999988754 24556667788888999999999876655
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.90 E-value=3.1 Score=27.03 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 036577 269 VDKAKELFLKMKDENINPNVVTYNSLIHGFCYANDWNEAKCLLIEMMDQ 317 (470)
Q Consensus 269 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (470)
.=++.+-++.+...++.|++.+..+.+++|.+.+|+..|.++|+..+.+
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3355555666666666677777777777777777777777777666544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.10 E-value=3.9 Score=26.58 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036577 306 EAKCLLIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ 351 (470)
Q Consensus 306 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 351 (470)
++.+-++.+......|++....+.+.+|.+.+++..|.++++-+..
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444444444445555555555555555555555555555555543
|